Your job contains 1 sequence.
>028758
MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD
KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG
QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHNKTEIYDPFYAL
LVHKISKNALICHLLVNDYRLQRL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028758
(204 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2100681 - symbol:PPL1 "PsbP-like protein 1" sp... 461 1.0e-43 1
TAIR|locus:2039727 - symbol:PnsL1 "Photosynthetic NDH su... 155 2.8e-11 1
TAIR|locus:2130295 - symbol:PPD1 "PsbP-Domain Protein1" s... 115 9.1e-05 1
>TAIR|locus:2100681 [details] [associations]
symbol:PPL1 "PsbP-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid
lumen" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0009657 "plastid organization"
evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0043085 "positive regulation of catalytic activity"
evidence=RCA] InterPro:IPR002683 Pfam:PF01789 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0019898 GO:GO:0005509
EMBL:AL132954 GO:GO:0031977 GO:GO:0015979 GO:GO:0009543
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
GO:GO:0009654 EMBL:AF419553 EMBL:AY097338 EMBL:AY087663
IPI:IPI00528004 PIR:PA0046 PIR:T47672 RefSeq:NP_191093.1
UniGene:At.27396 ProteinModelPortal:P82538 SMR:P82538 STRING:P82538
PaxDb:P82538 PRIDE:P82538 EnsemblPlants:AT3G55330.1 GeneID:824699
KEGG:ath:AT3G55330 TAIR:At3g55330 eggNOG:NOG08775
HOGENOM:HOG000232965 InParanoid:P82538 KO:K02717 OMA:GYEFLYP
PhylomeDB:P82538 ProtClustDB:CLSN2685283 Genevestigator:P82538
GermOnline:AT3G55330 Uniprot:P82538
Length = 230
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 94/176 (53%), Positives = 128/176 (72%)
Query: 1 MASLQHSPSSSIHQTSFLNSLPQLGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLD 60
MASL+ SPSS I S+ ++GV +P+ ++G+S +VKAEH S +SS++ D
Sbjct: 1 MASLKLSPSSPI-------SISKVGV------IPS-SKKGLSFLVKAEHHSSSSSSHLQD 46
Query: 61 KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
KC RR ++ GV+APW+SL+++ P SFAAES KGFL+V+D KD Y+F+YPFGWQEV+IEG
Sbjct: 47 KCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEG 106
Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSSAIFFIHN-KTEIYD 175
QDKV+KDVIEPLESVSVNL+PT KQ I++FGPP+++ + N KT + D
Sbjct: 107 QDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLID 162
>TAIR|locus:2039727 [details] [associations]
symbol:PnsL1 "Photosynthetic NDH subcomplex L 1"
species:3702 "Arabidopsis thaliana" [GO:0005509 "calcium ion
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0016556 "mRNA modification" evidence=RCA] [GO:0019344 "cysteine
biosynthetic process" evidence=RCA] InterPro:IPR002683 Pfam:PF01789
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0019898 GO:GO:0005509
EMBL:AC004218 UniGene:At.37167 UniGene:At.63501 GO:GO:0009535
GO:GO:0015979 GO:GO:0009543 Gene3D:3.40.1000.10 InterPro:IPR016123
SUPFAM:SSF55724 GO:GO:0009654 HOGENOM:HOG000232965 EMBL:AY039968
EMBL:AY133798 EMBL:AY085632 IPI:IPI00518089 IPI:IPI00656679
IPI:IPI00846788 PIR:T00557 RefSeq:NP_001031514.2
RefSeq:NP_001078022.1 RefSeq:NP_565906.1 ProteinModelPortal:O80634
SMR:O80634 STRING:O80634 PaxDb:O80634 PRIDE:O80634
EnsemblPlants:AT2G39470.1 GeneID:818532 KEGG:ath:AT2G39470
TAIR:At2g39470 eggNOG:NOG283132 InParanoid:Q94BP9 OMA:YAAPNQI
PhylomeDB:O80634 ProtClustDB:CLSN2688805 Genevestigator:O80634
Uniprot:O80634
Length = 238
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 46/134 (34%), Positives = 63/134 (47%)
Query: 46 KAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDKK 102
KA+ + S + RRQ + VGV +LV + P+ A E K + D++
Sbjct: 41 KADSSESTYQKGSGNNWKRRQAL-VGV----GTLVATSIPATLLLAEEIPKSYSPFVDRE 95
Query: 103 DGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSIFSS 162
DGYS+ YP W+E D FKD L++V V IPT K DI + GP +EV
Sbjct: 96 DGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVK 155
Query: 163 AIFFIHNKTE-IYD 175
F N+ IYD
Sbjct: 156 HKFAAPNQVATIYD 169
>TAIR|locus:2130295 [details] [associations]
symbol:PPD1 "PsbP-Domain Protein1" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009654 "oxygen evolving complex" evidence=ISS] [GO:0030095
"chloroplast photosystem II" evidence=ISS] [GO:0009543 "chloroplast
thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid lumen"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048564 "photosystem I assembly" evidence=IMP]
InterPro:IPR002683 Pfam:PF01789 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161541 GO:GO:0019898 GO:GO:0005509
GO:GO:0009535 GO:GO:0031977 GO:GO:0015979 EMBL:Z97339 GO:GO:0009543
Gene3D:3.40.1000.10 InterPro:IPR016123 SUPFAM:SSF55724
EMBL:AY085014 EMBL:AK175561 IPI:IPI00526562 IPI:IPI00547165
IPI:IPI00657053 PIR:G71419 RefSeq:NP_001031646.1 RefSeq:NP_567468.1
RefSeq:NP_974555.1 UniGene:At.33171 ProteinModelPortal:O23403
SMR:O23403 DIP:DIP-58590N STRING:O23403 PaxDb:O23403 PRIDE:O23403
EnsemblPlants:AT4G15510.1 GeneID:827223 KEGG:ath:AT4G15510
TAIR:At4g15510 eggNOG:NOG329161 HOGENOM:HOG000242253
InParanoid:O23403 OMA:YPQNWIQ PhylomeDB:O23403 ProtClustDB:PLN00059
BioCyc:MetaCyc:AT4G15510-MONOMER Genevestigator:O23403
GO:GO:0009654 Uniprot:O23403
Length = 287
Score = 115 (45.5 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 35/108 (32%), Positives = 54/108 (50%)
Query: 54 SSANSLDKCGRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPF 111
+ A + GRR+ + +G++ + +V+Q P +FA S F D DGYSF YP
Sbjct: 69 TDAKQVCAVGRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQ 125
Query: 112 GWQEVIIEGQDKVFKDVIEPLESVSVNLI-PTGKQ--DIRDFGPPQEV 156
W +V G D F+D + E++SV P+ + D G P+EV
Sbjct: 126 NWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEV 173
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 204 204 0.00094 111 3 11 22 0.47 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 587 (62 KB)
Total size of DFA: 167 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.64u 0.17s 18.81t Elapsed: 00:00:01
Total cpu time: 18.64u 0.17s 18.81t Elapsed: 00:00:01
Start: Sat May 11 09:47:36 2013 End: Sat May 11 09:47:37 2013