Query 028758
Match_columns 204
No_of_seqs 147 out of 202
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 16:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 6.8E-31 1.5E-35 232.2 10.6 118 59-179 74-204 (286)
2 PLN00042 photosystem II oxygen 100.0 3.6E-30 7.7E-35 226.8 9.9 119 59-179 47-193 (260)
3 PF01789 PsbP: PsbP; InterPro 99.9 4.2E-24 9E-29 176.1 8.0 97 83-179 11-111 (175)
4 PLN00066 PsbP domain-containin 99.9 2.1E-21 4.6E-26 171.8 11.6 120 59-178 42-202 (262)
5 PLN00067 PsbP domain-containin 99.8 9.9E-21 2.1E-25 167.2 10.9 121 56-179 37-201 (263)
6 PLN03152 hypothetical protein; 98.9 3.2E-09 6.9E-14 93.0 5.8 99 60-161 29-166 (241)
7 PF12712 DUF3805: Domain of un 89.4 0.52 1.1E-05 39.3 4.0 45 96-141 2-47 (153)
8 PF10518 TAT_signal: TAT (twin 56.3 14 0.00031 22.0 2.6 12 62-73 2-13 (26)
9 TIGR02811 formate_TAT formate 54.0 18 0.00039 26.1 3.3 11 59-69 6-16 (66)
10 PF07174 FAP: Fibronectin-atta 53.4 31 0.00067 31.9 5.3 66 96-163 110-191 (297)
11 PF08006 DUF1700: Protein of u 52.0 8.4 0.00018 31.8 1.5 20 145-164 45-64 (181)
12 PLN00058 photosystem II reacti 33.7 32 0.0007 27.2 2.0 21 59-79 46-66 (103)
13 PF12559 Inhibitor_I10: Serine 32.9 16 0.00035 26.0 0.2 12 104-115 44-55 (56)
14 PRK11615 hypothetical protein; 30.0 2.4E+02 0.0052 24.6 6.9 72 85-164 31-107 (185)
15 PF10399 UCR_Fe-S_N: Ubiquitin 29.7 45 0.00098 22.1 2.0 15 57-71 4-18 (41)
16 PRK10882 hydrogenase 2 protein 29.3 79 0.0017 29.3 4.1 13 62-74 1-13 (328)
17 cd04458 CSP_CDS Cold-Shock Pro 28.7 81 0.0017 21.4 3.2 27 94-126 3-29 (65)
18 PRK10943 cold shock-like prote 28.6 67 0.0014 22.9 2.9 20 93-112 5-24 (69)
19 TIGR03741 PRTRC_E PRTRC system 26.6 1.1E+02 0.0023 24.2 3.9 34 133-166 24-66 (104)
20 COG4784 Putative Zn-dependent 24.8 53 0.0012 31.7 2.2 37 83-119 272-311 (479)
21 PLN00054 photosystem I reactio 24.6 80 0.0017 26.2 2.9 15 59-73 25-39 (139)
22 TIGR02381 cspD cold shock doma 22.3 1.2E+02 0.0025 21.5 3.1 20 93-112 3-22 (68)
23 PRK09937 stationary phase/star 21.7 1.2E+02 0.0026 22.1 3.2 20 93-112 3-22 (74)
24 PLN02729 PSII-Q subunit 21.6 49 0.0011 29.5 1.2 27 61-90 49-76 (220)
25 PF05757 PsbQ: Oxygen evolving 20.9 34 0.00074 29.9 0.1 16 58-73 25-40 (202)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=99.97 E-value=6.8e-31 Score=232.21 Aligned_cols=118 Identities=29% Similarity=0.419 Sum_probs=101.4
Q ss_pred cCccchHHHHHHHH--HHhhhhhcCCCCcccccccccCceeeeeCCCCeEEeecCCceeeeecCcceeecCCCCCCcceE
Q 028758 59 LDKCGRRQMIAVGV--IAPWVSLVNQTPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVS 136 (204)
Q Consensus 59 ~~~~~RR~aL~~~a--~Aa~~s~~~~a~~A~Ae~~~~Gf~~Y~D~~dGYsFlyP~gW~ev~~~G~dv~F~D~~~~~eNVS 136 (204)
...++||++|+.++ +..+.+.++ .+.|+|+ +.||++|+|+.|||+|+||.||++|.+.|+|++|||+++++||||
T Consensus 74 ~~~~~rr~~~~~~l~~~~~~~s~~~-~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVS 150 (286)
T PLN00059 74 VCAVGRRKSMMMGLLMSGLIVSEAN-LPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLS 150 (286)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhc-CchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceE
Confidence 35778999976544 334455443 4478887 448999999999999999999999999999999999999999999
Q ss_pred EEEecCC---CCCcccCCCHHHHHHHHHhhhhcCC-----C---ceeeecchhh
Q 028758 137 VNLIPTG---KQDIRDFGPPQEVCSIFSSAIFFIH-----N---KTEIYDPFYA 179 (204)
Q Consensus 137 VvVsp~~---~~sI~dlGsPeeVae~L~kq~~a~p-----~---~a~Lida~~~ 179 (204)
|+|+|++ +++|+|||+|+||||+|++++++++ | +++||++..+
T Consensus 151 V~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~R 204 (286)
T PLN00059 151 VEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSR 204 (286)
T ss_pred EEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeE
Confidence 9999875 8999999999999999999999974 3 9999999855
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=99.96 E-value=3.6e-30 Score=226.82 Aligned_cols=119 Identities=24% Similarity=0.413 Sum_probs=105.5
Q ss_pred cCccchHHHHHHHHHH-hhhhhcCCCCcccccc--------cccCceeeeeCCCCeEEeecCCcee---eeecCcceeec
Q 028758 59 LDKCGRRQMIAVGVIA-PWVSLVNQTPPSFAAE--------SNKGFLSVTDKKDGYSFVYPFGWQE---VIIEGQDKVFK 126 (204)
Q Consensus 59 ~~~~~RR~aL~~~a~A-a~~s~~~~a~~A~Ae~--------~~~Gf~~Y~D~~dGYsFlyP~gW~e---v~~~G~dv~F~ 126 (204)
...++||.+|+++++| +.++.++|+++||+|+ ..+||.+| ++|||+|+||++|++ ++++|+|++|+
T Consensus 47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y--~~dgY~FlyP~~W~~~ke~~~~G~dv~f~ 124 (260)
T PLN00042 47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPY--NGDGFKLLVPSKWNPSKEREFPGQVLRFE 124 (260)
T ss_pred cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEe--eCCCeEEecCCCCccccccccCCceEEee
Confidence 4568899999888875 6789999999999986 36999999 469999999999994 45679999999
Q ss_pred CCCCCCcceEEEEecCCCCCcccCCCHHH----HHHHHHhhhhcCC---------C---ceeeecchhh
Q 028758 127 DVIEPLESVSVNLIPTGKQDIRDFGPPQE----VCSIFSSAIFFIH---------N---KTEIYDPFYA 179 (204)
Q Consensus 127 D~~~~~eNVSVvVsp~~~~sI~dlGsPee----Vae~L~kq~~a~p---------~---~a~Lida~~~ 179 (204)
|+++++|||||+|+|+++++|+|||+||| |+++|++|+++++ + +++||++..+
T Consensus 125 D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~r 193 (260)
T PLN00042 125 DNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQ 193 (260)
T ss_pred ccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeE
Confidence 99999999999999999999999999999 9999999999876 2 5789998655
No 3
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=99.90 E-value=4.2e-24 Score=176.10 Aligned_cols=97 Identities=37% Similarity=0.617 Sum_probs=82.0
Q ss_pred CCcccccccccCceeeeeCCCCeEEeecCCceeeeecCcceeecCCCCCCcceEEEEecCCCC-CcccCCCHHHHHHHHH
Q 028758 83 TPPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ-DIRDFGPPQEVCSIFS 161 (204)
Q Consensus 83 a~~A~Ae~~~~Gf~~Y~D~~dGYsFlyP~gW~ev~~~G~dv~F~D~~~~~eNVSVvVsp~~~~-sI~dlGsPeeVae~L~ 161 (204)
+..+.++...+||++|.|+++||+|.||.+|+++++.|+|++|+|+++.++||+|+|+|+.+. +|+|||+|+|||++|+
T Consensus 11 ~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~ 90 (175)
T PF01789_consen 11 ANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLL 90 (175)
T ss_dssp -----STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHH
T ss_pred chhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHHHHh
Confidence 334445667899999999999999999999999999999999999999999999999999855 9999999999999999
Q ss_pred hhhhcCCC---ceeeecchhh
Q 028758 162 SAIFFIHN---KTEIYDPFYA 179 (204)
Q Consensus 162 kq~~a~p~---~a~Lida~~~ 179 (204)
++.+++++ +++||++..+
T Consensus 91 ~~~~~~~~~~~~a~li~a~~~ 111 (175)
T PF01789_consen 91 NGELASPGSGREAELISASER 111 (175)
T ss_dssp HHCCCHCTSSEEEEEEEEEEE
T ss_pred hhhcccccCCcceEEEEeeee
Confidence 99998877 8899887654
No 4
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=99.86 E-value=2.1e-21 Score=171.78 Aligned_cols=120 Identities=20% Similarity=0.340 Sum_probs=98.2
Q ss_pred cCccchHHHHHHHHHHhhhhhcCCCCccc--------------ccccccCceeeeeCCC-------------CeEEeecC
Q 028758 59 LDKCGRRQMIAVGVIAPWVSLVNQTPPSF--------------AAESNKGFLSVTDKKD-------------GYSFVYPF 111 (204)
Q Consensus 59 ~~~~~RR~aL~~~a~Aa~~s~~~~a~~A~--------------Ae~~~~Gf~~Y~D~~d-------------GYsFlyP~ 111 (204)
...++||.+|+.+++++..+.++.+..++ .|++..||++|..+.. .|+|+||.
T Consensus 42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~ 121 (262)
T PLN00066 42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQ 121 (262)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCC
Confidence 45678999998776654443343333333 2556789999998876 49999999
Q ss_pred Cceeeeec-----CcceeecCCCCCCcceEEEEecC--------CCCCcccCCCHHHHHHHHHhhhhcCCC-ceeeecch
Q 028758 112 GWQEVIIE-----GQDKVFKDVIEPLESVSVNLIPT--------GKQDIRDFGPPQEVCSIFSSAIFFIHN-KTEIYDPF 177 (204)
Q Consensus 112 gW~ev~~~-----G~dv~F~D~~~~~eNVSVvVsp~--------~~~sI~dlGsPeeVae~L~kq~~a~p~-~a~Lida~ 177 (204)
||.|+.++ |+++.||+.++.++||+|+|+|+ ++++|+|||+||+|++.|++++++++. +++|+++.
T Consensus 122 GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eLl~a~ 201 (262)
T PLN00066 122 GWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSME 201 (262)
T ss_pred CCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccceeEee
Confidence 99999887 66777777778999999999997 589999999999999999999999988 99999986
Q ss_pred h
Q 028758 178 Y 178 (204)
Q Consensus 178 ~ 178 (204)
.
T Consensus 202 ~ 202 (262)
T PLN00066 202 V 202 (262)
T ss_pred e
Confidence 5
No 5
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=99.84 E-value=9.9e-21 Score=167.16 Aligned_cols=121 Identities=18% Similarity=0.311 Sum_probs=92.5
Q ss_pred cCccCccchHHHHHHHHHHhhhhhcCCCCcccc-c----------ccccCceeeeeC-----------CCCeEEeecCCc
Q 028758 56 ANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFA-A----------ESNKGFLSVTDK-----------KDGYSFVYPFGW 113 (204)
Q Consensus 56 s~~~~~~~RR~aL~~~a~Aa~~s~~~~a~~A~A-e----------~~~~Gf~~Y~D~-----------~dGYsFlyP~gW 113 (204)
++....+.||+.|..++.+.+.+.+... ++.| | +...||.-|.-. -.||+|+||.||
T Consensus 37 ~~~~~~~~rr~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW 115 (263)
T PLN00067 37 PRAAVVIHRRELLLGLALAPLILIAPEP-PAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTW 115 (263)
T ss_pred ccccchhHHHHHHhhhhhhhhhhccCCc-hhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCC
Confidence 3455567899998766655544443222 3333 2 224577777532 238999999999
Q ss_pred eeeeec----C-----------cceeecCCCCCCcceEEEEecC------CCCCcccCCCHHHHHHHHHhhhhcCCC-ce
Q 028758 114 QEVIIE----G-----------QDKVFKDVIEPLESVSVNLIPT------GKQDIRDFGPPQEVCSIFSSAIFFIHN-KT 171 (204)
Q Consensus 114 ~ev~~~----G-----------~dv~F~D~~~~~eNVSVvVsp~------~~~sI~dlGsPeeVae~L~kq~~a~p~-~a 171 (204)
++++++ | +|++|+|++ ++||+|+|+|+ ++++|+|||+||||+++|++.++++++ ++
T Consensus 116 ~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~ 193 (263)
T PLN00067 116 KQTRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPD 193 (263)
T ss_pred cCccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCc
Confidence 998886 4 899999955 78999999997 468999999999999999999999888 89
Q ss_pred eeecchhh
Q 028758 172 EIYDPFYA 179 (204)
Q Consensus 172 ~Lida~~~ 179 (204)
+||++..+
T Consensus 194 eLLeAs~r 201 (263)
T PLN00067 194 ELLETSVE 201 (263)
T ss_pred ceEEeeeE
Confidence 99998755
No 6
>PLN03152 hypothetical protein; Provisional
Probab=98.87 E-value=3.2e-09 Score=92.96 Aligned_cols=99 Identities=28% Similarity=0.415 Sum_probs=68.7
Q ss_pred CccchHHHHHHHHHHhhhh--hcCCCCccccccc------------ccCceeeeeCCCCeEEeecCCceeee----ec-C
Q 028758 60 DKCGRRQMIAVGVIAPWVS--LVNQTPPSFAAES------------NKGFLSVTDKKDGYSFVYPFGWQEVI----IE-G 120 (204)
Q Consensus 60 ~~~~RR~aL~~~a~Aa~~s--~~~~a~~A~Ae~~------------~~Gf~~Y~D~~dGYsFlyP~gW~ev~----~~-G 120 (204)
+...||+.+.-.++++..+ .-.+...++|+.. .+.|-.| .++||+.-||-+++.+- +. |
T Consensus 29 ~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~--~g~gf~~~~pp~f~di~e~~~~~~g 106 (241)
T PLN03152 29 CGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQF--YGDGFSIRVPPSFEDIMEPEDYNAG 106 (241)
T ss_pred ccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhh--hCCceEEeCCCChhhhcChhhcccc
Confidence 3556888875444444333 3333445666532 3456667 59999999999998532 11 2
Q ss_pred ------------cceeecCCCCCCcceEEEEecC--------CCCCcccCCCHHHHHHHHH
Q 028758 121 ------------QDKVFKDVIEPLESVSVNLIPT--------GKQDIRDFGPPQEVCSIFS 161 (204)
Q Consensus 121 ------------~dv~F~D~~~~~eNVSVvVsp~--------~~~sI~dlGsPeeVae~L~ 161 (204)
-.++|..+ |.+|||||+|+|+ +.++|+|||+|+|||+.|+
T Consensus 107 ~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v 166 (241)
T PLN03152 107 LSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV 166 (241)
T ss_pred cceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC
Confidence 13566665 7799999999997 5899999999999997776
No 7
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=89.43 E-value=0.52 Score=39.34 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=26.6
Q ss_pred eeeeeCCCCeEEeecCCceeeeecCc-ceeecCCCCCCcceEEEEec
Q 028758 96 LSVTDKKDGYSFVYPFGWQEVIIEGQ-DKVFKDVIEPLESVSVNLIP 141 (204)
Q Consensus 96 ~~Y~D~~dGYsFlyP~gW~ev~~~G~-dv~F~D~~~~~eNVSVvVsp 141 (204)
+.|..|+.=|+..||.+|.|.+ +|- ...|-|+..=+.|..+..-.
T Consensus 2 kKfiSpg~WFS~~YP~~W~EfE-D~E~sflFYnp~~WTGNfRISayk 47 (153)
T PF12712_consen 2 KKFISPGAWFSMEYPADWNEFE-DGEGSFLFYNPDQWTGNFRISAYK 47 (153)
T ss_dssp EEEE-GGG-EEEEE-TT-EEE----TTEEEEE-SSS---EEEEEEEE
T ss_pred CcccCCCceEEEecCCCcchhc-cCCcceEEEChHHhcCceEEEEEe
Confidence 5688888899999999999998 544 34578888889998866544
No 8
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=56.27 E-value=14 Score=21.96 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=9.0
Q ss_pred cchHHHHHHHHH
Q 028758 62 CGRRQMIAVGVI 73 (204)
Q Consensus 62 ~~RR~aL~~~a~ 73 (204)
++||+.|-.+++
T Consensus 2 ~sRR~fLk~~~a 13 (26)
T PF10518_consen 2 LSRRQFLKGGAA 13 (26)
T ss_pred CcHHHHHHHHHH
Confidence 579999965544
No 9
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=54.02 E-value=18 Score=26.14 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=8.2
Q ss_pred cCccchHHHHH
Q 028758 59 LDKCGRRQMIA 69 (204)
Q Consensus 59 ~~~~~RR~aL~ 69 (204)
+...+||..|.
T Consensus 6 ~~~~sRR~Flk 16 (66)
T TIGR02811 6 KADPSRRDLLK 16 (66)
T ss_pred cCCccHHHHHH
Confidence 44668999994
No 10
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=53.36 E-value=31 Score=31.90 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=37.6
Q ss_pred eeeeeCCCCeEEeecCCceeeeec----CcceeecCCC--------CCCcc-eEEEEecCC---CCCcccCCCHHHHHHH
Q 028758 96 LSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVI--------EPLES-VSVNLIPTG---KQDIRDFGPPQEVCSI 159 (204)
Q Consensus 96 ~~Y~D~~dGYsFlyP~gW~ev~~~----G~dv~F~D~~--------~~~eN-VSVvVsp~~---~~sI~dlGsPeeVae~ 159 (204)
-++.|...||+|++|.||.+-+-. |+.+.-+-.. .+..| -+|++-..| +.+.| -+-.+.+.+
T Consensus 110 grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae--~dn~kaa~r 187 (297)
T PF07174_consen 110 GRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAE--PDNTKAAVR 187 (297)
T ss_pred ccccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEecccccccccccc--CChHHHHHH
Confidence 356677889999999999965432 5554443222 22233 344444454 11211 234558888
Q ss_pred HHhh
Q 028758 160 FSSA 163 (204)
Q Consensus 160 L~kq 163 (204)
|...
T Consensus 188 l~sd 191 (297)
T PF07174_consen 188 LASD 191 (297)
T ss_pred Hhcc
Confidence 8775
No 11
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=52.04 E-value=8.4 Score=31.76 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.1
Q ss_pred CCcccCCCHHHHHHHHHhhh
Q 028758 145 QDIRDFGPPQEVCSIFSSAI 164 (204)
Q Consensus 145 ~sI~dlGsPeeVae~L~kq~ 164 (204)
.=+++||+|+|+|..+..++
T Consensus 45 eii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 45 EIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHcCCHHHHHHHHHHhh
Confidence 45789999999999998764
No 12
>PLN00058 photosystem II reaction center subunit T; Provisional
Probab=33.66 E-value=32 Score=27.17 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=14.8
Q ss_pred cCccchHHHHHHHHHHhhhhh
Q 028758 59 LDKCGRRQMIAVGVIAPWVSL 79 (204)
Q Consensus 59 ~~~~~RR~aL~~~a~Aa~~s~ 79 (204)
++..+||.+|-..++++..+.
T Consensus 46 e~~~gRR~~mfaaaAaav~s~ 66 (103)
T PLN00058 46 QSTTMRRDLMFTAAAAAVCSL 66 (103)
T ss_pred cchhhHHHHHHHHHHHHHHhh
Confidence 467789999976666555554
No 13
>PF12559 Inhibitor_I10: Serine endopeptidase inhibitors; InterPro: IPR022217 This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularise the molecule giving it its inhibitory conformation. ; PDB: 1IXU_A.
Probab=32.87 E-value=16 Score=25.98 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=4.0
Q ss_pred CeEEeecCCcee
Q 028758 104 GYSFVYPFGWQE 115 (204)
Q Consensus 104 GYsFlyP~gW~e 115 (204)
..+..||++|.+
T Consensus 44 ~~TlKyPSD~ee 55 (56)
T PF12559_consen 44 IQTLKYPSDWEE 55 (56)
T ss_dssp -----SS-SS--
T ss_pred CcceeCCCcccc
Confidence 379999999975
No 14
>PRK11615 hypothetical protein; Provisional
Probab=29.97 E-value=2.4e+02 Score=24.57 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=40.7
Q ss_pred cccccccccCceeeeeCCCCeEEeecCCceeeeec-Cc----ceeecCCCCCCcceEEEEecCCCCCcccCCCHHHHHHH
Q 028758 85 PSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQ----DKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVCSI 159 (204)
Q Consensus 85 ~A~Ae~~~~Gf~~Y~D~~dGYsFlyP~gW~ev~~~-G~----dv~F~D~~~~~eNVSVvVsp~~~~sI~dlGsPeeVae~ 159 (204)
.+.|++...| +...=-+.+.+|..|.|+.....+ |. --+|-|. .+.=.|+|++-| .+=++ -+..+.+
T Consensus 31 ~~~a~~~~~~-q~VSLLdGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~---tg~kavIVi~gD-~~~~~---Ld~la~r 102 (185)
T PRK11615 31 GAVAESNASG-QPVSLLDGKLSFTLPADMSDQSGKLGTQANNMHVYADA---TGQKAVIVILGD-DTNED---LAVLAKR 102 (185)
T ss_pred cccccccccC-ceeEEeccEEEEEcCCccccccccccccccceEEEEcC---CCCEEEEEEeCC-CChhh---HHHHHHH
Confidence 3444444444 334335677999999999976554 42 3457663 344455555433 11112 3557778
Q ss_pred HHhhh
Q 028758 160 FSSAI 164 (204)
Q Consensus 160 L~kq~ 164 (204)
|..|-
T Consensus 103 l~~qQ 107 (185)
T PRK11615 103 LEDQQ 107 (185)
T ss_pred HHHHH
Confidence 87763
No 15
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=29.74 E-value=45 Score=22.08 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=6.6
Q ss_pred CccCccchHHHHHHH
Q 028758 57 NSLDKCGRRQMIAVG 71 (204)
Q Consensus 57 ~~~~~~~RR~aL~~~ 71 (204)
.+....+||..|...
T Consensus 4 ~~~~~~~RRdFL~~a 18 (41)
T PF10399_consen 4 NEPVDPTRRDFLTIA 18 (41)
T ss_dssp ------HHHHHHHHH
T ss_pred CCCCCchHHHHHHHH
Confidence 345567899998433
No 16
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=29.30 E-value=79 Score=29.34 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=8.7
Q ss_pred cchHHHHHHHHHH
Q 028758 62 CGRRQMIAVGVIA 74 (204)
Q Consensus 62 ~~RR~aL~~~a~A 74 (204)
+.||..|..+++|
T Consensus 1 ~~RR~fl~~~~~~ 13 (328)
T PRK10882 1 MNRRNFLKAASAG 13 (328)
T ss_pred CCHHHHHHHHHHH
Confidence 4699999654433
No 17
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=28.71 E-value=81 Score=21.44 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=19.3
Q ss_pred CceeeeeCCCCeEEeecCCceeeeecCcceeec
Q 028758 94 GFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFK 126 (204)
Q Consensus 94 Gf~~Y~D~~dGYsFlyP~gW~ev~~~G~dv~F~ 126 (204)
|-....|+..||-|+-|.+ .|.|++|+
T Consensus 3 G~Vk~~~~~kGfGFI~~~~------~g~diffh 29 (65)
T cd04458 3 GTVKWFDDEKGFGFITPDD------GGEDVFVH 29 (65)
T ss_pred EEEEEEECCCCeEEEecCC------CCcCEEEE
Confidence 4445667889999998887 35666654
No 18
>PRK10943 cold shock-like protein CspC; Provisional
Probab=28.61 E-value=67 Score=22.92 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=16.7
Q ss_pred cCceeeeeCCCCeEEeecCC
Q 028758 93 KGFLSVTDKKDGYSFVYPFG 112 (204)
Q Consensus 93 ~Gf~~Y~D~~dGYsFlyP~g 112 (204)
.|.-..-|...||-|+-|.+
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPAD 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 56777788999999999975
No 19
>TIGR03741 PRTRC_E PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.
Probab=26.63 E-value=1.1e+02 Score=24.20 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=23.9
Q ss_pred cceEEEEecCCCCCc--cc-------CCCHHHHHHHHHhhhhc
Q 028758 133 ESVSVNLIPTGKQDI--RD-------FGPPQEVCSIFSSAIFF 166 (204)
Q Consensus 133 eNVSVvVsp~~~~sI--~d-------lGsPeeVae~L~kq~~a 166 (204)
+++.|.|.|..+... .. -|+|+|..+.|...+-.
T Consensus 24 d~l~V~v~P~~~~~~~d~~l~~Pl~L~gTp~ELD~gF~~ai~~ 66 (104)
T TIGR03741 24 DKLTVTVTPTPKSGAKDGALTKPLVLTGTPAELDAGFAGALGQ 66 (104)
T ss_pred CEEEEEEeeccccccccccccCCeeeccCHHHHHHHHHHHHHh
Confidence 389999999742222 33 49999999888866543
No 20
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=24.84 E-value=53 Score=31.73 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=27.9
Q ss_pred CCcccccccccCce---eeeeCCCCeEEeecCCceeeeec
Q 028758 83 TPPSFAAESNKGFL---SVTDKKDGYSFVYPFGWQEVIIE 119 (204)
Q Consensus 83 a~~A~Ae~~~~Gf~---~Y~D~~dGYsFlyP~gW~ev~~~ 119 (204)
-..-|+..+.+||. .|.-++=|++|.||.||.-....
T Consensus 272 dg~lyGDSp~eGyvRgq~FlH~~Lg~tf~~P~Gf~IdN~~ 311 (479)
T COG4784 272 DGLLYGDSPQEGYVRGQTFLHPELGVTFDVPDGFKIDNSA 311 (479)
T ss_pred cCcccCCCcccceecccceeccccceEEecCCceEecCch
Confidence 33456677778885 57778889999999999865543
No 21
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=24.62 E-value=80 Score=26.20 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=9.9
Q ss_pred cCccchHHHHHHHHH
Q 028758 59 LDKCGRRQMIAVGVI 73 (204)
Q Consensus 59 ~~~~~RR~aL~~~a~ 73 (204)
...-+||.+|..+++
T Consensus 25 ~~~~grraa~~~Laa 39 (139)
T PLN00054 25 DASDGRRAALVGLAA 39 (139)
T ss_pred ccccchHHHHHHHHH
Confidence 344569999876554
No 22
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=22.32 E-value=1.2e+02 Score=21.49 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=16.3
Q ss_pred cCceeeeeCCCCeEEeecCC
Q 028758 93 KGFLSVTDKKDGYSFVYPFG 112 (204)
Q Consensus 93 ~Gf~~Y~D~~dGYsFlyP~g 112 (204)
.|-..+.|...||-|+-|.+
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~ 22 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEG 22 (68)
T ss_pred CeEEEEEeCCCCeEEEecCC
Confidence 36667778999999999985
No 23
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=21.67 E-value=1.2e+02 Score=22.08 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=15.9
Q ss_pred cCceeeeeCCCCeEEeecCC
Q 028758 93 KGFLSVTDKKDGYSFVYPFG 112 (204)
Q Consensus 93 ~Gf~~Y~D~~dGYsFlyP~g 112 (204)
.|-..+-|...||-|+-|.+
T Consensus 3 ~G~Vkwfn~~KGfGFI~~~~ 22 (74)
T PRK09937 3 KGTVKWFNNAKGFGFICPEG 22 (74)
T ss_pred CeEEEEEeCCCCeEEEeeCC
Confidence 35566778899999999975
No 24
>PLN02729 PSII-Q subunit
Probab=21.57 E-value=49 Score=29.46 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=16.0
Q ss_pred ccchHHHHHHHHHHhh-hhhcCCCCcccccc
Q 028758 61 KCGRRQMIAVGVIAPW-VSLVNQTPPSFAAE 90 (204)
Q Consensus 61 ~~~RR~aL~~~a~Aa~-~s~~~~a~~A~Ae~ 90 (204)
..+||.+|+..+++.. .+. +.+++||.
T Consensus 49 ~~~rr~~lgl~a~~l~~~s~---~~~~~A~~ 76 (220)
T PLN02729 49 QTTRRLALGLASIALIGNSG---NGVSLAED 76 (220)
T ss_pred hhhHHHHHHHHHHHHhcchh---hhHHHhcc
Confidence 4579999976654332 223 44567763
No 25
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=20.90 E-value=34 Score=29.87 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=0.0
Q ss_pred ccCccchHHHHHHHHH
Q 028758 58 SLDKCGRRQMIAVGVI 73 (204)
Q Consensus 58 ~~~~~~RR~aL~~~a~ 73 (204)
.+...+||.+|+.+++
T Consensus 25 ~~~~~~RRa~l~~l~a 40 (202)
T PF05757_consen 25 AQQQTSRRAVLGSLLA 40 (202)
T ss_dssp ----------------
T ss_pred ccccccHHHHHHHHHH
Confidence 4556779999884544
Done!