Query 028758
Match_columns 204
No_of_seqs 152 out of 202
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 18:29:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028758.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2248-2252//hhsearch_pdb/028758hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnj_A SLL1418 protein, putati 1.0 1 1 158.6 0.0 91 89-179 8-106 (170)
2 1v2b_A 23-kDa polypeptide of p 1.0 1 1 147.0 4.3 88 90-179 4-110 (177)
3 2xb3_A PSBP protein; photosynt 1.0 1 1 146.3 9.2 89 91-179 4-97 (165)
4 3hlz_A Uncharacterized protein 1.0 1 1 27.3 4.5 44 96-139 5-48 (269)
5 1tu1_A Hypothetical protein PA 1.0 1 1 15.3 4.8 41 95-140 3-43 (148)
6 3rq0_A Glycosyl hydrolases fam 1.0 1 1 13.6 0.8 57 61-118 6-65 (269)
7 2lpd_A Uncharacterized protein 1.0 1 1 13.4 3.2 29 92-120 24-57 (95)
8 3bgh_A Protein HPAA, putative 1.0 1 1 13.3 0.0 23 94-116 86-108 (236)
9 2pst_X Hypothetical protein PA 1.0 1 1 13.1 3.3 29 92-120 11-44 (74)
10 3sbq_A Nitrous-oxide reductase 1.0 1 1 13.0 0.5 51 58-108 14-71 (638)
No 1
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=1.00 E-value=1 Score=158.63 Aligned_cols=91 Identities=29% Similarity=0.469 Sum_probs=84.5
Q ss_pred CCCCCCCEEEEECCCCEEEEECCCCEEEEEC----CCCEEECCCCCCCCCEEEEEECCCC-CCCCCCCCHHHHHHHHHHH
Q ss_conf 2235683145628998589401896244123----8620111787887424999721998-7844579979999998764
Q 028758 89 AESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVCSIFSSA 163 (204)
Q Consensus 89 e~~~~Gf~~Y~D~~dGYsFlyP~gW~ev~~~----G~dv~F~D~~~~~eNVSVvVsp~~~-~sI~dlGsPeeVae~L~~q 163 (204)
++.++||++|.|+.|||+|+||.+|++++++ |+|++|+|+++.++||+|+|+|+++ ++|+|||+|++|+++|+++
T Consensus 8 ~~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~ 87 (170)
T 2lnj_A 8 GVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKT 87 (170)
Q ss_pred HHCCCC---CEEEECCHHH
Q ss_conf 533798---3246520111
Q 028758 164 IFFIHN---KTEIYDPFYA 179 (204)
Q Consensus 164 ~~~~p~---~a~Lida~~~ 179 (204)
++++++ +++||++..+
T Consensus 88 ~~~~~~~~~~a~li~a~~~ 106 (170)
T 2lnj_A 88 VNDASQGDRQAELINAEAR 106 (170)
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=1.00 E-value=1 Score=147.01 Aligned_cols=88 Identities=24% Similarity=0.447 Sum_probs=77.5
Q ss_pred CCCCCCEEEEECCCCEEEEECCCCEEEE---ECCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHH----HHHHHHH
Q ss_conf 2356831456289985894018962441---23862011178788742499972199878445799799----9999876
Q 028758 90 ESNKGFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE----VCSIFSS 162 (204)
Q Consensus 90 ~~~~Gf~~Y~D~~dGYsFlyP~gW~ev~---~~G~dv~F~D~~~~~eNVSVvVsp~~~~sI~dlGsPee----Vae~L~~ 162 (204)
.+++||++|. +|||+|+||.+|+++. ++|+|++|+|+++.++||+|+|+|+++++|+|||+|++ |+++|++
T Consensus 4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~ 81 (177)
T 1v2b_A 4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR 81 (177)
T ss_dssp ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--
T ss_pred CCCCCCEEEE--CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 8899965785--69889985899825110047982599967767776479999579988866778989998888999888
Q ss_pred HHHCCC---------C---CEEEECCHHH
Q ss_conf 453379---------8---3246520111
Q 028758 163 AIFFIH---------N---KTEIYDPFYA 179 (204)
Q Consensus 163 q~~~~p---------~---~a~Lida~~~ 179 (204)
++++++ + +++|+++..+
T Consensus 82 ~~~~~~~~~~~gf~~~~~~~a~ll~a~~r 110 (177)
T 1v2b_A 82 QAYSGKTDSEGGFESDAVAIANVLETSTA 110 (177)
T ss_dssp ----------------CCCEEEEEEEEEE
T ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 76334334557756675421389886778
No 3
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=1.00 E-value=1 Score=146.31 Aligned_cols=89 Identities=30% Similarity=0.547 Sum_probs=83.2
Q ss_pred CCCCCEEEEECCCCEEEEECCCCEEEEEC-CCCEEECCCCCCCCCEEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 35683145628998589401896244123-8620111787887424999721998-784457997999999876453379
Q 028758 91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVCSIFSSAIFFIH 168 (204)
Q Consensus 91 ~~~Gf~~Y~D~~dGYsFlyP~gW~ev~~~-G~dv~F~D~~~~~eNVSVvVsp~~~-~sI~dlGsPeeVae~L~~q~~~~p 168 (204)
.++||++|.|+++||+|.||.+|+++.++ |++++|+|+++..+||+|+|+|+++ ++|+|||+|++|+++|++++++++
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~ 83 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS 83 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred CCCCCEEEECCCCCEEEECCCCCEEECCCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 77786489828998799868998685378970599978645774699999469988895785899999999988740578
Q ss_pred C---CEEEECCHHH
Q ss_conf 8---3246520111
Q 028758 169 N---KTEIYDPFYA 179 (204)
Q Consensus 169 ~---~a~Lida~~~ 179 (204)
+ .++|+++..+
T Consensus 84 ~~~~~~~l~~a~~r 97 (165)
T 2xb3_A 84 ESGRSSALIAATSQ 97 (165)
T ss_dssp TSSCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEE
T ss_conf 87864389981226
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=1.00 E-value=1 Score=27.25 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=28.8
Q ss_pred EEEEECCCCEEEEECCCCEEEEECCCCEEECCCCCCCCCEEEEE
Q ss_conf 14562899858940189624412386201117878874249997
Q 028758 96 LSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNL 139 (204)
Q Consensus 96 ~~Y~D~~dGYsFlyP~gW~ev~~~G~dv~F~D~~~~~eNVSVvV 139 (204)
+.|+.|+.=|+..||.+|.|++-.--.-.|.+|-.=+.|..+.-
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISa 48 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISA 48 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEE
T ss_pred CEEECCCCEEEEECCCCCCCCCCCCCCEEEECHHHCCCCEEEEE
T ss_conf 50016884067766888221037887246657324056368775
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=1.00 E-value=1 Score=15.29 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=23.3
Q ss_pred CEEEEECCCCEEEEECCCCEEEEECCCCEEECCCCCCCCCEEEEEE
Q ss_conf 3145628998589401896244123862011178788742499972
Q 028758 95 FLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLI 140 (204)
Q Consensus 95 f~~Y~D~~dGYsFlyP~gW~ev~~~G~dv~F~D~~~~~eNVSVvVs 140 (204)
+..| ....++|..|.+|.... .-+++-....+..-.+++|+
T Consensus 3 m~~y--~~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIs 43 (148)
T 1tu1_A 3 MTLY--RLHEADLEIPDAWQDQS---INIFKLPASGPAREASFVIS 43 (148)
T ss_dssp EEEE--ECSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEE
T ss_pred CCEE--EECCEEEECCCCCEEEE---EEEEECCCCCCCCCEEEEEE
T ss_conf 7668--98979992799808336---99998688877774489999
No 6
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis}
Probab=1.00 E-value=1 Score=13.58 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-EEEEECCCCE--EEEECCCCEEEEE
Q ss_conf 43047999999778664302899964322235683-1456289985--8940189624412
Q 028758 61 KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGF-LSVTDKKDGY--SFVYPFGWQEVII 118 (204)
Q Consensus 61 ~~~RR~aL~~~a~Aa~~s~~~~a~~A~Ae~~~~Gf-~~Y~D~~dGY--sFlyP~gW~ev~~ 118 (204)
.+.||.+|.....+.++.++ +...|.|++...|+ ..+.|..||= +..=++.|.-...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~a~~~p~~~g~~lvw~DeF~g~~g~~~d~~~W~~~~g 65 (269)
T 3rq0_A 6 NVDRRQMLLLSGLGATAAVL-PVPRAAAVPNQTAASYVFADEFDGPAGSAPSAAKWTIAKA 65 (269)
T ss_dssp -----------------------------------CCSEEECCCSCTTCCCCTTTEEECSS
T ss_pred HCCCHHHHHHHHHHHHHHHC-CCHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECC
T ss_conf 03605689999999998754-3101125988788718997317999999977441888159
No 7
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=1.00 E-value=1 Score=13.41 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCEEE-----EECCCCEEEEECC
Q ss_conf 5683145628998589-----4018962441238
Q 028758 92 NKGFLSVTDKKDGYSF-----VYPFGWQEVIIEG 120 (204)
Q Consensus 92 ~~Gf~~Y~D~~dGYsF-----lyP~gW~ev~~~G 120 (204)
..-|...++.++-||+ -+|.||..+-++|
T Consensus 24 ~~~f~VLvN~E~QYSLWP~~~~VPaGW~~v~~~~ 57 (95)
T 2lpd_A 24 DELYFVVRNNEGQYSVWMDGRSLPAGWETVGEPA 57 (95)
T ss_dssp CCCEEEEECSSCSCEEEETTSCCCTTCEEEEEEE
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9868999738986412758788898814378878
No 8
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin; structural genomics, unknown function, PSI-2, protein struct initiative; 2.45A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=13.30 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=18.4
Q ss_pred CCEEEEECCCCEEEEECCCCEEE
Q ss_conf 83145628998589401896244
Q 028758 94 GFLSVTDKKDGYSFVYPFGWQEV 116 (204)
Q Consensus 94 Gf~~Y~D~~dGYsFlyP~gW~ev 116 (204)
.=.+|.|...+|..+-+.||+.+
T Consensus 86 d~Lt~~~Kkk~ylvl~~~G~I~i 108 (236)
T 3bgh_A 86 SEIPQDIKEKALLVLRMDGNVAI 108 (236)
T ss_dssp GGCCHHHHHHCSEEEEEEEEEEE
T ss_pred HHCCHHHHHCEEEEEECCCCEEE
T ss_conf 44898875236899942661788
No 9
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=1.00 E-value=1 Score=13.15 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=24.4
Q ss_pred CCCCEEEEECCCCEEE-----EECCCCEEEEECC
Q ss_conf 5683145628998589-----4018962441238
Q 028758 92 NKGFLSVTDKKDGYSF-----VYPFGWQEVIIEG 120 (204)
Q Consensus 92 ~~Gf~~Y~D~~dGYsF-----lyP~gW~ev~~~G 120 (204)
..-|...++.++-|++ -+|.||..+-++|
T Consensus 11 ~~~f~VlvN~E~QySLWP~~~~vP~GW~~v~~~~ 44 (74)
T 2pst_X 11 DIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSG 44 (74)
T ss_dssp CSCEEEEEETTCCEEEEETTSCCCTTEEEEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9728999748986411748788898823078878
No 10
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=1.00 E-value=1 Score=13.03 Aligned_cols=51 Identities=10% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCC------CEEEEECCCCEEEE
Q ss_conf 567430479999997786-6430289996432223568------31456289985894
Q 028758 58 SLDKCGRRQMIAVGVIAP-WVSLVNQTPPSFAAESNKG------FLSVTDKKDGYSFV 108 (204)
Q Consensus 58 ~~~~~~RR~aL~~~a~Aa-~~s~~~~a~~A~Ae~~~~G------f~~Y~D~~dGYsFl 108 (204)
+...++||..|...+.++ .+...+.+...++.....+ -+.|+-+++-=+|.
T Consensus 14 ~~~~~~rr~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~k~~v~pG~~Deyy 71 (638)
T 3sbq_A 14 EKLGLSRRGFLGASAVTGAAVAATALGGAVMTRESWAQAVKESKQKIHVGPGELDDYY 71 (638)
T ss_dssp --------------------------------------------CCCCCCTTCCCSEE
T ss_pred CCCCCCHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 2458536664112456555543204453333332123444211224126998765579
Done!