BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028759
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1SJC8|RUVX_NOCSJ Putative Holliday junction resolvase OS=Nocardioides sp. (strain
BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1
Length = 156
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 60 WRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETD---E 113
R G +G+D G +R G+A S GF P+ TV + +G+ + + A+ +E E
Sbjct: 1 MRAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLE 60
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS 173
++GLP+S G E P + KVR AGRLA R A V L+DE T+ A + + G +
Sbjct: 61 VVVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLRDQGRT 118
Query: 174 KSARQTKTDAYAAVV 188
R+ D AAV+
Sbjct: 119 GGKRRAVVDQAAAVL 133
>sp|Q2IQC1|RUVX_ANADE Putative Holliday junction resolvase OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=Adeh_1232 PE=3 SV=1
Length = 137
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 65 SLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKS 121
+LGVDLG R GLA++ R +T + RGE +L + E+A+ E ++GLP +
Sbjct: 3 TLGVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+E P + R A RL A G V L DE +S EA R+ G+S ++ +
Sbjct: 63 MDGTEGPSARLARGFAPRL---EAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQV 119
Query: 182 DAYAAVV 188
DA AA V
Sbjct: 120 DAEAAAV 126
>sp|B4UH04|RUVX_ANASK Putative Holliday junction resolvase OS=Anaeromyxobacter sp.
(strain K) GN=AnaeK_2633 PE=3 SV=1
Length = 137
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 65 SLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKS 121
+LGVDLG R GLA++ R +T + R E +L + E+A+ E ++GLP +
Sbjct: 3 TLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+E P + R A RL A G V L DE +S EA R+ GLS ++ +
Sbjct: 63 MDGTEGPSARLARGFAPRL---EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQV 119
Query: 182 DAYAAVV 188
DA AA V
Sbjct: 120 DAEAAAV 126
>sp|B8JDZ9|RUVX_ANAD2 Putative Holliday junction resolvase OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_2727
PE=3 SV=1
Length = 137
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 65 SLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKS 121
+LGVDLG R GLA++ R +T + R E +L + E+A+ E ++GLP +
Sbjct: 3 TLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+E P + R A RL A G V L DE +S EA R+ GLS ++ +
Sbjct: 63 MDGTEGPSARLARGFAPRL---EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQV 119
Query: 182 DAYAAVV 188
DA AA V
Sbjct: 120 DAEAAAV 126
>sp|A7HDE0|RUVX_ANADF Putative Holliday junction resolvase OS=Anaeromyxobacter sp.
(strain Fw109-5) GN=Anae109_2535 PE=3 SV=1
Length = 137
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG+DLG +R GLAL+ RPL+V++ R + +L + RE E ++GLP +
Sbjct: 4 LGLDLGRARIGLALADDVLRTARPLSVVRHRTREADLASIAATLREWEVGTAVVGLPLNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + R+ A LA RA G V L DE ++ EA R+ G S + + D
Sbjct: 64 DGSEGASARYARAFAEELA-RAT--GVPVELFDERLSTFEAESRLREQGFSARELRGRVD 120
Query: 183 AYAAVV 188
A AA V
Sbjct: 121 AEAAAV 126
>sp|Q2RHZ7|RUVX_MOOTA Putative Holliday junction resolvase OS=Moorella thermoacetica
(strain ATCC 39073) GN=Moth_1640 PE=3 SV=1
Length = 140
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
+G+D+G G+ALS G+ + LT ++ R +L L E+ +R +E ++GLP++
Sbjct: 4 MGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPRNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+GS PQ+ VR+ A L AE G V+ DE T+ A ++ LS+ R+ D
Sbjct: 64 NGSLGPQAEAVRAFARHL---QAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVID 120
Query: 183 AYAA 186
AA
Sbjct: 121 QVAA 124
>sp|A7MJR8|RUVX_CROS8 Putative Holliday junction resolvase OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=ESA_00393 PE=3 SV=1
Length = 138
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT +K + + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A RL R G +V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARTFANRLHGRF---GIKVTLHDERLSTVEARAGLFERGGFRALNKG 119
Query: 180 KTDAYAAVVRQES 192
D+ +AVV ES
Sbjct: 120 SVDSASAVVILES 132
>sp|Q3SFS3|RUVX_THIDA Putative Holliday junction resolvase OS=Thiobacillus denitrificans
(strain ATCC 25259) GN=Tbd_2580 PE=3 SV=1
Length = 145
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 63 GFSLGVDLGLSRTGLA---LSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGL 118
G L DLGL RTG+A L+ G PLTV++ + +E +A + F++GL
Sbjct: 8 GTVLAFDLGLKRTGVASGELAIGIA-HPLTVIQAESTDARMAAIEKLAAEWQPALFVLGL 66
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P DGSE + R+ A RL R ER V+L+DE TSA A + G+ +
Sbjct: 67 PTRADGSENEMTRVARNFARRLESR-FERP--VFLIDERLTSATAESELHARGIHGKKNK 123
Query: 179 TKTDAYAA 186
TDA AA
Sbjct: 124 ALTDAVAA 131
>sp|C6C125|RUVX_DESAD Putative Holliday junction resolvase OS=Desulfovibrio salexigens
(strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763)
GN=Desal_1125 PE=3 SV=1
Length = 135
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L +D G R GLA+S P V+ + + + +LLEI + E+ + +IGLP S
Sbjct: 4 LSIDFGTKRVGLAISDPDQIFAFPYKVMERTTRDAMFSELLEIIENEKVGDIVIGLPLSL 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG +T + +VR+ A L R ++L+DE +S A D + GL R+ D
Sbjct: 64 DGEDTLTTRQVRNFAASLERRV---DLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNLD 120
Query: 183 AYAAVVRQES 192
+ AA + E+
Sbjct: 121 SQAAKIILET 130
>sp|B7NI12|RUVX_ECO7I Putative Holliday junction resolvase OS=Escherichia coli O7:K1
(strain IAI39 / ExPEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GIEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|Q3YXS2|RUVX_SHISS Putative Holliday junction resolvase OS=Shigella sonnei (strain
Ss046) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|Q83JS4|RUVX_SHIFL Putative Holliday junction resolvase OS=Shigella flexneri GN=yqgF
PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|Q0T0U3|RUVX_SHIF8 Putative Holliday junction resolvase OS=Shigella flexneri serotype
5b (strain 8401) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|Q31WL1|RUVX_SHIBS Putative Holliday junction resolvase OS=Shigella boydii serotype 4
(strain Sb227) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B2U0W9|RUVX_SHIB3 Putative Holliday junction resolvase OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B7LPR6|RUVX_ESCF3 Putative Holliday junction resolvase OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=yqgF
PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B1LDF8|RUVX_ECOSM Putative Holliday junction resolvase OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B7N7K2|RUVX_ECOLU Putative Holliday junction resolvase OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B7LYX9|RUVX_ECO8A Putative Holliday junction resolvase OS=Escherichia coli O8 (strain
IAI1) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B7UHZ6|RUVX_ECO27 Putative Holliday junction resolvase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|A7ZR72|RUVX_ECO24 Putative Holliday junction resolvase OS=Escherichia coli O139:H28
(strain E24377A / ETEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|A5CCV6|RUVX_ORITB Putative Holliday junction resolvase OS=Orientia tsutsugamushi
(strain Boryong) GN=OTBS_0498 PE=3 SV=1
Length = 157
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 17/155 (10%)
Query: 41 LSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEK 97
++S+ EFL A +K+ LG+D G + G+A+S + PL T+L ++
Sbjct: 3 INSISEFLQAADIKKQ--------ILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQDR 54
Query: 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157
+ ++ EIA +IGLP DG+ET Q+++V+ A +LA + ++L DE
Sbjct: 55 VN-KIQEIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL---LPIFLCDE- 109
Query: 158 RTSAEAVDRMINMG-LSKSARQTKTDAYAAVVRQE 191
R +++A + ++ +G + + R D AA + E
Sbjct: 110 RLTSKAANNLLKIGNIKRKVRNAIDDRVAASIILE 144
>sp|B5YQE7|RUVX_ECO5E Putative Holliday junction resolvase OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KIDSASAVIILES 132
>sp|Q8XCV0|RUVX_ECO57 Putative Holliday junction resolvase OS=Escherichia coli O157:H7
GN=yqgF PE=3 SV=1
Length = 138
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KIDSASAVIILES 132
>sp|B3CU37|RUVX_ORITI Putative Holliday junction resolvase OS=Orientia tsutsugamushi
(strain Ikeda) GN=OTT_1426 PE=3 SV=1
Length = 157
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 41 LSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEK 97
++S+ EFL A +K+ LG+D G + G+A+S + PL T+ ++
Sbjct: 3 INSIIEFLQAADIKKQ--------ILGIDFGEKKVGVAISNIEHTVAMPLQTIFATNQDR 54
Query: 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157
+ ++ EIA +IGLP DG+ET Q+++V+ A +LA + ++L DE
Sbjct: 55 IN-KIQEIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL---LPIFLCDE- 109
Query: 158 RTSAEAVDRMINMG-LSKSARQTKTDAYAAVVRQE 191
R +++A + ++ MG + + R D AA + E
Sbjct: 110 RLTSKAANNLLKMGNIKRKVRNAIDDRVAASIILE 144
>sp|Q2G9X2|RUVX_NOVAD Putative Holliday junction resolvase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=Saro_0906 PE=3
SV=1
Length = 155
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETD 112
+D+L GG +G+D G G+AL F T+ + + + Q+ I
Sbjct: 10 RDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERGVK 69
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
+IGLP + DGSE+P+S R++A L + G + L DE T+ A MI
Sbjct: 70 GIVIGLPLNMDGSESPRSQGARAMARNL----EDLGLPILLWDERWTTQAAERAMIEQDF 125
Query: 173 SKSARQTKTDAYAAVV 188
S++ R + D++AA +
Sbjct: 126 SRAKRAERIDSHAAAL 141
>sp|B3EPT4|RUVX_CHLPB Putative Holliday junction resolvase OS=Chlorobium phaeobacteroides
(strain BS1) GN=Cphamn1_2429 PE=3 SV=1
Length = 144
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTGLA + FC V EK+ + Q ++ I+G P + DG+
Sbjct: 10 LAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKIITIIKSFLQENSVEKIIVGYPLNSDGT 69
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ P + + L+ AA V +DEH +S +A +I GLS+ RQ K D+
Sbjct: 70 KNPMTGIIDGFIEELS--AAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQRKGRLDS 127
Query: 184 YAAVV 188
AA +
Sbjct: 128 AAACL 132
>sp|A9MQS7|RUVX_SALAR Putative Holliday junction resolvase OS=Salmonella arizonae (strain
ATCC BAA-731 / CDC346-86 / RSK2980) GN=yqgF PE=3 SV=1
Length = 138
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B1KXB5|RUVX_CLOBM Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Loch Maree / Type A3) GN=CLK_1947 PE=3 SV=1
Length = 137
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAA 186
AA
Sbjct: 121 KVAA 124
>sp|A7GGE9|RUVX_CLOBL Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Langeland / NCTC 10281 / Type F) GN=CLI_2625
PE=3 SV=1
Length = 137
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAA 186
AA
Sbjct: 121 KVAA 124
>sp|B1IJG5|RUVX_CLOBK Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Okra / Type B1) GN=CLD_2003 PE=3 SV=1
Length = 137
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAA 186
AA
Sbjct: 121 KVAA 124
>sp|C1FTB8|RUVX_CLOBJ Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Kyoto / Type A2) GN=CLM_2869 PE=3 SV=1
Length = 137
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAA 186
AA
Sbjct: 121 KVAA 124
>sp|A5I4Z3|RUVX_CLOBH Putative Holliday junction resolvase OS=Clostridium botulinum
(strain Hall / ATCC 3502 / NCTC 13319 / Type A)
GN=CBO2562 PE=3 SV=1
Length = 137
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAA 186
AA
Sbjct: 121 KVAA 124
>sp|C3L148|RUVX_CLOB6 Putative Holliday junction resolvase OS=Clostridium botulinum
(strain 657 / Type Ba4) GN=CLJ_B2792 PE=3 SV=1
Length = 137
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAA 186
AA
Sbjct: 121 KVAA 124
>sp|A7FWJ3|RUVX_CLOB1 Putative Holliday junction resolvase OS=Clostridium botulinum
(strain ATCC 19397 / Type A) GN=CLB_2503 PE=3 SV=1
Length = 137
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAA 186
AA
Sbjct: 121 KVAA 124
>sp|Q1R778|RUVX_ECOUT Putative Holliday junction resolvase OS=Escherichia coli (strain
UTI89 / UPEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|P0A8I1|RUVX_ECOLI Putative Holliday junction resolvase OS=Escherichia coli (strain
K12) GN=yqgF PE=1 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B1IT58|RUVX_ECOLC Putative Holliday junction resolvase OS=Escherichia coli (strain
ATCC 8739 / DSM 1576 / Crooks) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|P0A8I2|RUVX_ECOL6 Putative Holliday junction resolvase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|Q0TDQ2|RUVX_ECOL5 Putative Holliday junction resolvase OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|A1AFD5|RUVX_ECOK1 Putative Holliday junction resolvase OS=Escherichia coli O1:K1 /
APEC GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|A8A489|RUVX_ECOHS Putative Holliday junction resolvase OS=Escherichia coli O9:H4
(strain HS) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B1XFA9|RUVX_ECODH Putative Holliday junction resolvase OS=Escherichia coli (strain
K12 / DH10B) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|C5A0L8|RUVX_ECOBW Putative Holliday junction resolvase OS=Escherichia coli (strain
K12 / MC4100 / BW2952) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B7MZP8|RUVX_ECO81 Putative Holliday junction resolvase OS=Escherichia coli O81
(strain ED1a) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B7LFL2|RUVX_ECO55 Putative Holliday junction resolvase OS=Escherichia coli (strain
55989 / EAEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B7MMD7|RUVX_ECO45 Putative Holliday junction resolvase OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B8DIJ5|RUVX_DESVM Putative Holliday junction resolvase OS=Desulfovibrio vulgaris
(strain Miyazaki F / DSM 19637) GN=DvMF_2352 PE=3 SV=1
Length = 142
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D G RTG+A S G P T++ ++ +LL +A+ E + +++GLP
Sbjct: 4 LGIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLH 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG++T + +VR+ RL R VYL++E +S EA D + + GLS A + D
Sbjct: 64 DGTDTLTTRQVRNFVERLKRRTT---LPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVD 120
Query: 183 AYAAV 187
AAV
Sbjct: 121 QQAAV 125
>sp|Q8ZM50|RUVX_SALTY Putative Holliday junction resolvase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
>sp|B4T5K4|RUVX_SALNS Putative Holliday junction resolvase OS=Salmonella newport (strain
SL254) GN=yqgF PE=3 SV=1
Length = 138
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 119
Query: 180 KTDAYAAVVRQES 192
K D+ +AV+ ES
Sbjct: 120 KVDSASAVIILES 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,917,959
Number of Sequences: 539616
Number of extensions: 2687478
Number of successful extensions: 6694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 359
Number of HSP's that attempted gapping in prelim test: 6319
Number of HSP's gapped (non-prelim): 490
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)