Query 028759
Match_columns 204
No_of_seqs 126 out of 1139
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 18:12:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028759.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2253-2256//hhsearch_pdb/028759hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nu0_A Hypothetical protein YQ 1.0 1 1 252.5 9.0 130 63-195 3-136 (138)
2 1vhx_A Putative holliday junct 1.0 1 1 226.7 10.7 129 63-194 3-137 (150)
3 1iv0_A Hypothetical protein; r 1.0 1 1 185.1 9.9 94 64-161 2-98 (98)
4 4ep4_A Crossover junction endo 1.0 1 1 53.7 11.5 98 63-167 1-114 (166)
5 3bzc_A TEX; helix-turn-helix, 1.0 1 1 53.4 11.2 98 60-165 326-430 (785)
6 1hjr_A Holliday junction resol 1.0 1 1 41.8 12.8 90 63-155 1-102 (158)
7 3psf_A Transcription elongatio 1.0 1 1 40.5 12.0 90 62-161 518-627 (1030)
8 3psi_A Transcription elongatio 1.0 1 1 39.6 11.6 90 62-161 515-624 (1219)
9 3vgl_A Glucokinase; ROK family 1.0 1 1 29.9 4.9 102 63-167 2-116 (321)
10 3epq_A Putative fructokinase; 1.0 1 1 29.8 7.7 102 63-167 3-117 (302)
No 1
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=1.00 E-value=1 Score=252.52 Aligned_cols=130 Identities=28% Similarity=0.397 Sum_probs=119.5
Q ss_pred CEEEEEECCCCEEEEEEECC--CEEEEEEEEECCC-HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 52999935998199998529--7234405677256-25899999999873999899941479999998457999999999
Q 028759 63 GFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGR 139 (204)
Q Consensus 63 ~~iLglD~G~krIGiAisD~--~~A~Pl~vi~~~~-~~~~~~L~~li~e~~v~~iVIGlP~~~dGt~s~~~~~i~~Fa~~ 139 (204)
+++||||||+||||||+||+ .+|+|++++.+++ ..++..|.+++++|+++.+|||+|++|||+++++++++++|+++
T Consensus 3 ~~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~ 82 (138)
T 1nu0_A 3 GTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANR 82 (138)
T ss_dssp CEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHH
T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 71999980799799999859998893179997688656899999999984999899940447795867799999999999
Q ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC-CCC
Q ss_conf 98863328972899718772899999999749996645888939999998323-335
Q 028759 140 LAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVVRQES-ITF 195 (204)
Q Consensus 140 L~~~~~~~~lpV~l~DER~ST~~A~~~L~e~g~sr~krk~~iD~~AA~iILQ~-~~~ 195 (204)
|+.++ ++||++||||+||.+|++.|++.+.+++++|+.+|++||++|||+ ++.
T Consensus 83 L~~~~---~lpV~~~DERlTT~~A~~~l~~~~~~~~~~k~~iD~~AA~iILq~yLd~ 136 (138)
T 1nu0_A 83 IHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDSASAVIILESYMEQ 136 (138)
T ss_dssp HHHHH---CCCEEEEEEECCCCCC-------CCCCCCCHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHH---CCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 98874---9999998588689999999998267421037646699999999999842
No 2
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=1.00 E-value=1 Score=226.74 Aligned_cols=129 Identities=26% Similarity=0.363 Sum_probs=119.7
Q ss_pred CEEEEEECCCCEEEEEEECC--CEEEEEEEEECCC---HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 52999935998199998529--7234405677256---258999999998739998999414799999984579999999
Q 028759 63 GFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRG---EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVA 137 (204)
Q Consensus 63 ~~iLglD~G~krIGiAisD~--~~A~Pl~vi~~~~---~~~~~~L~~li~e~~v~~iVIGlP~~~dGt~s~~~~~i~~Fa 137 (204)
.++||||||++|||+|++|. .+++|+++|.... ...++.|.+++++|+|+.+|||+|++|||++++++.+++.|+
T Consensus 3 mriLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~ 82 (150)
T 1vhx_A 3 LRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFA 82 (150)
T ss_dssp EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHH
T ss_pred CEEEEEECCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 78999972679899999979998983488997488656999999999999839998999320647863618999999999
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC-CC
Q ss_conf 9998863328972899718772899999999749996645888939999998323-33
Q 028759 138 GRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVVRQES-IT 194 (204)
Q Consensus 138 ~~L~~~~~~~~lpV~l~DER~ST~~A~~~L~e~g~sr~krk~~iD~~AA~iILQ~-~~ 194 (204)
..|..++ ++||++|||||||.+|++.|++.|++++++|+.+|++||++|||+ ++
T Consensus 83 ~~L~~~~---~lpV~~vDEr~Ts~~Ak~~l~~~g~~r~~~k~~iD~~AA~iILq~~L~ 137 (150)
T 1vhx_A 83 KVLETTY---NVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLD 137 (150)
T ss_dssp HHHHHHH---CSCEEEECCSSCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---CCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9998760---997899669889999999999769762225865769999999999985
No 3
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=1.00 E-value=1 Score=185.12 Aligned_cols=94 Identities=30% Similarity=0.333 Sum_probs=87.0
Q ss_pred EEEEEECCCCEEEEEEECC--CEEEEEEEEECCC-HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2999935998199998529--7234405677256-258999999998739998999414799999984579999999999
Q 028759 64 FSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRL 140 (204)
Q Consensus 64 ~iLglD~G~krIGiAisD~--~~A~Pl~vi~~~~-~~~~~~L~~li~e~~v~~iVIGlP~~~dGt~s~~~~~i~~Fa~~L 140 (204)
++||||||+||||||+||. .+|+|++++.+++ ..++++|.+++++|+++.+|||+|++|||+++++++++++|+++|
T Consensus 2 riLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L 81 (98)
T 1iv0_A 2 RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEAL 81 (98)
T ss_dssp CEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHH
T ss_pred CEEEEEECCCEEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 59999847997999998089976610478972671789999999999859998999515678979187999999999999
Q ss_pred HHHHCCCCCCEEEECCCCCHH
Q ss_conf 886332897289971877289
Q 028759 141 AVRAAERGWRVYLLDEHRTSA 161 (204)
Q Consensus 141 ~~~~~~~~lpV~l~DER~ST~ 161 (204)
+.+ ++||++||||+||.
T Consensus 82 ~~~----~lpV~~~DERlTT~ 98 (98)
T 1iv0_A 82 RAR----GVEVELWDERFTTK 98 (98)
T ss_dssp HHT----TCEEEEECCSCCCC
T ss_pred HCC----CCCEEEECCCCCCC
T ss_conf 618----99899988897879
No 4
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=1.00 E-value=1 Score=53.65 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=66.7
Q ss_pred CEEEEEECCCCEEEEEEEC--CC---EE--EEEEEEECCC--------HHHHHHHHHHHHHCCCCEEEEEECC-CCCCCC
Q ss_conf 5299993599819999852--97---23--4405677256--------2589999999987399989994147-999999
Q 028759 63 GFSLGVDLGLSRTGLALSK--GF---CV--RPLTVLKLRG--------EKLELQLLEIAQREETDEFIIGLPK-SWDGSE 126 (204)
Q Consensus 63 ~~iLglD~G~krIGiAisD--~~---~A--~Pl~vi~~~~--------~~~~~~L~~li~e~~v~~iVIGlP~-~~dGt~ 126 (204)
.+|||||+|..++|.++-| +. .. --.+++..+. ....+.|.+++++|+++.++|--|+ +.|.+.
T Consensus 1 MrILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~s 80 (166)
T 4ep4_A 1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL 80 (166)
T ss_dssp CEEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCSSCSHH
T ss_pred CEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCHHH
T ss_conf 98999842558668999980598656079998476978999998999999999999999980998899931331268588
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 84579999999999886332897289971877289999999
Q 028759 127 TPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (204)
Q Consensus 127 s~~~~~i~~Fa~~L~~~~~~~~lpV~l~DER~ST~~A~~~L 167 (204)
.-..-+++-.+.....+ .++||..+ |-.+.+...
T Consensus 81 al~lgqarGv~~la~~~---~glpv~ey----tP~~vKkav 114 (166)
T 4ep4_A 81 AYKVGWALGAVLVAAFE---AGVPVYAY----GPMQVKQAL 114 (166)
T ss_dssp HHHHHHHHHHHHHHHHH---HTCCEEEE----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---CCCCEEEE----CHHHHHHHH
T ss_conf 99999999999999997---59987998----889999983
No 5
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=1.00 E-value=1 Score=53.39 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=67.5
Q ss_pred CCCCEEEEEECC-CCEEEEEEECCC-EEEEEEEE-EC--CC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH
Q ss_conf 989529999359-981999985297-23440567-72--56--2589999999987399989994147999999845799
Q 028759 60 WRGGFSLGVDLG-LSRTGLALSKGF-CVRPLTVL-KL--RG--EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNK 132 (204)
Q Consensus 60 ~~~~~iLglD~G-~krIGiAisD~~-~A~Pl~vi-~~--~~--~~~~~~L~~li~e~~v~~iVIGlP~~~dGt~s~~~~~ 132 (204)
+++.++||+|+| +.-|.+|+.|.. -..-..++ +. .. ......|.+++..++|..|+|| +|+.|. .
T Consensus 326 ~~~~~vlg~dpg~r~g~k~a~vd~~G~~l~~~~iy~~~~~~~~~~~~~~l~~li~~~~~~~IaIG-----ngtasr---e 397 (785)
T 3bzc_A 326 AGPRATLGLDPGLRTGVKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG-----NGTASR---E 397 (785)
T ss_dssp CCSCCEEEEECCSSSCEEEEEECTTSCEEEEEEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEE-----SSTTHH---H
T ss_pred CCCCEEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-----CCCCCH---H
T ss_conf 87872899789986736999998999889889990699666799999999999997699789988-----972478---9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 999999998863328972899718772899999
Q 028759 133 VRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165 (204)
Q Consensus 133 i~~Fa~~L~~~~~~~~lpV~l~DER~ST~~A~~ 165 (204)
+..|...+-+..+...+++++++|..++.-...
T Consensus 398 t~~~v~~l~~~~~~~~i~~v~v~e~gArvy~as 430 (785)
T 3bzc_A 398 TDKLAGELIKKYPGMKLTKIMVSEAGASVYSAS 430 (785)
T ss_dssp HHHHHHHHHHHCGGGCCEEEEECCHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHH
T ss_conf 999999999854667888799728868799999
No 6
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=1.00 E-value=1 Score=41.81 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=57.0
Q ss_pred CEEEEEECCCCEEEEEEEC--CC--EEEEEEEEECCC-------HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-HHH
Q ss_conf 5299993599819999852--97--234405677256-------25899999999873999899941479999998-457
Q 028759 63 GFSLGVDLGLSRTGLALSK--GF--CVRPLTVLKLRG-------EKLELQLLEIAQREETDEFIIGLPKSWDGSET-PQS 130 (204)
Q Consensus 63 ~~iLglD~G~krIGiAisD--~~--~A~Pl~vi~~~~-------~~~~~~L~~li~e~~v~~iVIGlP~~~dGt~s-~~~ 130 (204)
.++||||+|..++|.|+.+ +. ..--.+++..+. ....+.|.+++++++++.++|=-++--.+..+ -..
T Consensus 1 m~ILGIDPGl~~tG~gvi~~~g~~~~~v~~G~i~t~~~~~~~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~l 80 (158)
T 1hjr_A 1 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKL 80 (158)
T ss_dssp CEEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHH
T ss_pred CEEEEECCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 98999846878716999990498689998517977999989999999999999999839998999550223575799999
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9999999999886332897289971
Q 028759 131 NKVRSVAGRLAVRAAERGWRVYLLD 155 (204)
Q Consensus 131 ~~i~~Fa~~L~~~~~~~~lpV~l~D 155 (204)
-+++-.+..... ..++||..+-
T Consensus 81 gqarGv~~~a~~---~~~ipv~eyt 102 (158)
T 1hjr_A 81 GQARGVAIVAAV---NQELPVFEYA 102 (158)
T ss_dssp HHHHHHHHHHHH---TTTCCEEEEE
T ss_pred HHHHHHHHHHHH---HCCCCEEEEC
T ss_conf 999999999999---8599789988
No 7
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=40.48 Aligned_cols=90 Identities=13% Similarity=-0.015 Sum_probs=56.9
Q ss_pred CCEEEEEECCCC-----EEEEEEECCC-EEEEEEEE-----ECC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
Q ss_conf 952999935998-----1999985297-23440567-----725-62589999999987399989994147999999845
Q 028759 62 GGFSLGVDLGLS-----RTGLALSKGF-CVRPLTVL-----KLR-GEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQ 129 (204)
Q Consensus 62 ~~~iLglD~G~k-----rIGiAisD~~-~A~Pl~vi-----~~~-~~~~~~~L~~li~e~~v~~iVIGlP~~~dGt~s~~ 129 (204)
..++||+|+|.. -|-+|+.|.. -..-..++ ..+ .......|.+++..++|..|+|| +|+.
T Consensus 518 ~~~VlaldpG~~~~~~~g~k~a~vd~~G~~l~~~~i~~~~~~~~~~~~~~~~l~~li~~~~~~~IaIG-----n~s~--- 589 (1030)
T 3psf_A 518 IPKILSLTCGQGRFGADAIIAVYVNRKGDFIRDYKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN-----GPNP--- 589 (1030)
T ss_dssp CCCEEEEECTTCCTTTSCEEEEEECTTSCEEEEEEECSCTTCSSCCHHHHHHHHHHHHHHCCSEEEEC-----CSST---
T ss_pred CCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-----CCCH---
T ss_conf 87089966888887888759999999999898889817888756689999999999998399099987-----9988---
Q ss_pred HHHHHHHHHHHHHHHC--------CCCCCEEEECCCCCHH
Q ss_conf 7999999999988633--------2897289971877289
Q 028759 130 SNKVRSVAGRLAVRAA--------ERGWRVYLLDEHRTSA 161 (204)
Q Consensus 130 ~~~i~~Fa~~L~~~~~--------~~~lpV~l~DER~ST~ 161 (204)
.++.|...+..... ..++++++++|..-|.
T Consensus 590 --et~~l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~gAsv 627 (1030)
T 3psf_A 590 --KTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIR 627 (1030)
T ss_dssp --HHHHHHHHHHHHHHHTTCBCTTSCBCCEEECCCTTHHH
T ss_pred --HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHH
T ss_conf --89999999999987520233567886579966648899
No 8
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=39.65 Aligned_cols=90 Identities=13% Similarity=-0.017 Sum_probs=57.2
Q ss_pred CCEEEEEECCCC-----EEEEEEECCC-EEEEEEEE-----ECC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
Q ss_conf 952999935998-----1999985297-23440567-----725-62589999999987399989994147999999845
Q 028759 62 GGFSLGVDLGLS-----RTGLALSKGF-CVRPLTVL-----KLR-GEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQ 129 (204)
Q Consensus 62 ~~~iLglD~G~k-----rIGiAisD~~-~A~Pl~vi-----~~~-~~~~~~~L~~li~e~~v~~iVIGlP~~~dGt~s~~ 129 (204)
..++||+|+|.. -|-+|+.|.. -..-..++ ..+ .......|.+++..++|..|+|| +|+
T Consensus 515 ~~~VlaldpG~r~~g~~g~k~a~vD~~G~vl~~~~i~~~~~~~~~~~~a~~~l~~li~~~~~~vIaIG-----n~s---- 585 (1219)
T 3psi_A 515 IPKILSLTCGQGRFGADAIIAVYVNRKGDFIRDYKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGIN-----GPN---- 585 (1219)
T ss_dssp CCCEEEEECTTCCTTTTCEEEEEECTTSCEEEEEEECSCTTCSSCSHHHHHHHHHHHHHHCCSEEEEC-----CSS----
T ss_pred CCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-----CCC----
T ss_conf 87189966887887898559999999999898889907888735589999999999998399099987-----998----
Q ss_pred HHHHHHHHHHHHHHHC--------CCCCCEEEECCCCCHH
Q ss_conf 7999999999988633--------2897289971877289
Q 028759 130 SNKVRSVAGRLAVRAA--------ERGWRVYLLDEHRTSA 161 (204)
Q Consensus 130 ~~~i~~Fa~~L~~~~~--------~~~lpV~l~DER~ST~ 161 (204)
..++.|...+..... ..++++++++|-.-|.
T Consensus 586 -ret~~l~~~l~~~i~~~~~~~~~~~~i~vviV~e~gAsv 624 (1219)
T 3psi_A 586 -PKTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIR 624 (1219)
T ss_dssp -THHHHHHHHHHHHHHHTTCBCSSSCBCCEEECCCTTHHH
T ss_pred -HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHH
T ss_conf -889999999999987411233567785389977568889
No 9
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=1.00 E-value=1 Score=29.89 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=59.6
Q ss_pred CEEEEEECCCCEEEEEEECC--C-EEEEEEEEECCCHHHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCHH-----H
Q ss_conf 52999935998199998529--7-234405677256258999----9999987399989994147999999845-----7
Q 028759 63 GFSLGVDLGLSRTGLALSKG--F-CVRPLTVLKLRGEKLELQ----LLEIAQREETDEFIIGLPKSWDGSETPQ-----S 130 (204)
Q Consensus 63 ~~iLglD~G~krIGiAisD~--~-~A~Pl~vi~~~~~~~~~~----L~~li~e~~v~~iVIGlP~~~dGt~s~~-----~ 130 (204)
+.++|+|+|..++-+++.|. . ..+-....+.......+. +.++.++.++.++.||.|=..|...+.. .
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~gigi~~pG~vd~~~g~v~~~~~l 81 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTAEGIVDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFAPNI 81 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCCBCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEESSEECTTSSCEEECSSS
T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCEEEECCCC
T ss_conf 67999998898899999989997999999627999999999999999999854682499981344576899989847989
Q ss_pred -HHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf -9999999999886332897289971877289999999
Q 028759 131 -NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (204)
Q Consensus 131 -~~i~~Fa~~L~~~~~~~~lpV~l~DER~ST~~A~~~L 167 (204)
-.-..+.+.|++++ ++||.+.+.-.....|+..+
T Consensus 82 ~w~~~~l~~~l~~~~---~~pv~v~NDa~aaal~E~~~ 116 (321)
T 3vgl_A 82 DWRHEPLKDKVEQRV---GLPVVVENDANAAAWGEYRF 116 (321)
T ss_dssp CCEEECHHHHHHHHH---CSCEEEEEHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH---CCCEEEEEHHHHHHHHHHHH
T ss_conf 874898899996101---89889985204599999975
No 10
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=1.00 E-value=1 Score=29.76 Aligned_cols=102 Identities=10% Similarity=-0.009 Sum_probs=65.4
Q ss_pred CEEEEEECCCCEEEEEEECCC-EEEEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----------CHHH
Q ss_conf 529999359981999985297-23440567725-62589999999987399989994147999999----------8457
Q 028759 63 GFSLGVDLGLSRTGLALSKGF-CVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSWDGSE----------TPQS 130 (204)
Q Consensus 63 ~~iLglD~G~krIGiAisD~~-~A~Pl~vi~~~-~~~~~~~L~~li~e~~v~~iVIGlP~~~dGt~----------s~~~ 130 (204)
..++|+|+|..++=+|+.|.. .......++.. .......+.+.+++.++.++-||.|=..|... ++..
T Consensus 3 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~t~~~~~~l~~i~~~~~~~~i~gigi~~pG~vd~~~~~~~~G~i~~~~~~ 82 (302)
T 3epq_A 3 AMLGGIEAGGTXFVCAVGREDGTIIDRIEFPTXMPDETIEXVIQYFSQFSLQAIGIGSFGPVDNDXTSQTYGTITATPXA 82 (302)
T ss_dssp CCEEEEEECSSEEEEEEECTTSCEEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEEEECSSEECCTTSTTTTEECCCSST
T ss_pred CEEEEEEECCCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCEEECCCCC
T ss_conf 29999998722048999989995899999448875778999998740288009999804134466566666389617999
Q ss_pred -HHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf -9999999999886332897289971877289999999
Q 028759 131 -NKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM 167 (204)
Q Consensus 131 -~~i~~Fa~~L~~~~~~~~lpV~l~DER~ST~~A~~~L 167 (204)
-.-..+.+.|++++ ++||.+.+.-.....|+.++
T Consensus 83 ~w~~~~l~~~l~~~~---~~pV~v~NDanaaalaE~~~ 117 (302)
T 3epq_A 83 GWRHYPFLQTVXNEM---XIPVGFSTDVNAAALGEFLF 117 (302)
T ss_dssp TTBTCCHHHHHHHHH---CSCEEEEEHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH---CCCEEEECHHHHHHHHHHHH
T ss_conf 862887599999974---79879940669999999996
Done!