BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028760
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 345 bits (885), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 166/203 (81%), Positives = 181/203 (89%), Gaps = 2/203 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 1 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 58
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 59 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 118
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 119 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 178
Query: 181 VFSATDPKRSARDSHVPVCISSP 203
VFSATDPKRSARDSHVP+ P
Sbjct: 179 VFSATDPKRSARDSHVPILAPLP 201
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 344 bits (883), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/203 (81%), Positives = 181/203 (89%), Gaps = 2/203 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 1 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 58
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 59 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 118
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 119 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 178
Query: 181 VFSATDPKRSARDSHVPVCISSP 203
VFSATDPKRSARDSHVP+ P
Sbjct: 179 VFSATDPKRSARDSHVPILAPLP 201
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 344 bits (882), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/203 (81%), Positives = 181/203 (89%), Gaps = 2/203 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 24 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 81
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 82 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 141
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 142 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 201
Query: 181 VFSATDPKRSARDSHVPVCISSP 203
VFSATDPKRSARDSHVP+ P
Sbjct: 202 VFSATDPKRSARDSHVPILAPLP 224
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 343 bits (879), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 165/203 (81%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 20 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 77
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV L+R
Sbjct: 78 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLR 137
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 138 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 197
Query: 181 VFSATDPKRSARDSHVPVCISSP 203
VFSATDPKRSARDSHVP+ P
Sbjct: 198 VFSATDPKRSARDSHVPILAPLP 220
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 342 bits (878), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 165/203 (81%), Positives = 180/203 (88%), Gaps = 2/203 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 24 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 81
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV L+R
Sbjct: 82 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLR 141
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 142 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 201
Query: 181 VFSATDPKRSARDSHVPVCISSP 203
VFSATDPKRSARDSHVP+ P
Sbjct: 202 VFSATDPKRSARDSHVPILAPLP 224
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 97/175 (55%), Gaps = 11/175 (6%)
Query: 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHK-----KQSDACGGVGLLGIAWAFGGM 86
+E K F+RA++AEF+AT LF+++S+ + +G K Q+ V ++ AFG
Sbjct: 3 SEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK---VSLAFGLS 59
Query: 87 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE 146
I L ISG H+NPAVT GL L+ ++S+ RA+ Y++AQC+GAI ++
Sbjct: 60 IATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSL 119
Query: 147 Y-NSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
NSL G N +A G N G LG EIIGT LV V + TD +R P+ I
Sbjct: 120 TGNSL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAI 172
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 7/174 (4%)
Query: 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHK---KQSDACGGV-GLLGIAWAFGGMI 87
+E K F+RA++AEF+A +LF+++S+ + +G K + G V + ++ AFG I
Sbjct: 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62
Query: 88 FVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-E 146
L ISG H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI ++
Sbjct: 63 ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122
Query: 147 YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
NSL G N +A G N G LG EIIGT LV V + TD +R P+ I
Sbjct: 123 DNSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAI 174
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 103/180 (57%), Gaps = 6/180 (3%)
Query: 24 PPAPLIDMAELKLWS--FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAW 81
P + I +A +W+ F++A+ AEF+A L+F+ +SV + I + V ++ I+
Sbjct: 34 PSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISL 92
Query: 82 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKA 141
FG I +V C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++
Sbjct: 93 CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL-- 150
Query: 142 FMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
++ + +GG G TV G L E+I TF LV+T+F++ D KR+ V + I
Sbjct: 151 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAI 210
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
+F++A+ AEF+A L+F+ +SV + I + V ++ I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANT 156
SGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG G T
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 127
Query: 157 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
V G L E+I TF LV+T+F++ D KR+ V + I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAI 171
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
+F++A+ AEF+A L+F+ +SV + I + V ++ I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANT 156
SGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG G T
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 127
Query: 157 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
V G L E+I TF LV+T+F++ D KR+ V + I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAI 171
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 4/164 (2%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
+F++A+ AEF+A L+F+ +S+ + I V ++ I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-VDMVLISLCFGLSIATMVQCFGHI 60
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANT 156
SGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG G
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTM 118
Query: 157 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
V G L E+I TF LV+T+F++ D KR+ + + I
Sbjct: 119 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAI 162
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 6/170 (3%)
Query: 31 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVL 90
M EL+ SF+RA+ AEF ATL +++ + + A G + +L +A AFG + L
Sbjct: 1 MWELRSASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATL 55
Query: 91 VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSL 150
V ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ +
Sbjct: 56 VQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG- 114
Query: 151 GGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
NT+ G + G A EI T V +F+ D +R+ R V + +
Sbjct: 115 NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 164
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 6/170 (3%)
Query: 31 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVL 90
M EL+ SF+RA+ AEF A+L +++ + + A G + +L +A AFG + L
Sbjct: 1 MWELRSASFWRAICAEFFASLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATL 55
Query: 91 VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSL 150
V ISG H+NPAVTF + ++SL+RA+ YMVAQ LGA+ G ++ +
Sbjct: 56 VQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRG- 114
Query: 151 GGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
NT+ G + G A EI T V +F+ D +R+ R V + +
Sbjct: 115 NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 164
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 6/163 (3%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
SF+RA+ AEF ATL +++ + + A G + +L +A AFG + LV I
Sbjct: 4 SFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVGHI 58
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV 157
SG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + NT+
Sbjct: 59 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTL 117
Query: 158 ASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
G + G A EI T V +F+ D +R+ R V + +
Sbjct: 118 HPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 160
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 6/163 (3%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
SF+RA+ AEF ATL +++ + + A G + +L +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVGHI 56
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV 157
SG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + NT+
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTL 115
Query: 158 ASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCI 200
G + G A EI T V +F+ D +R+ R V + +
Sbjct: 116 HPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV 158
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 8/155 (5%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
+F +A+ AEF+ATL+F++ + + + K A + L IA AFG I L +
Sbjct: 10 AFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPTI--LQIALAFGLAIGTLAQALGPV 64
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV 157
SGGHINPA+T L + ++SL+RA Y+ AQ +GAI G G++ + N+ G A
Sbjct: 65 SGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL--YGVAPLNARGNLAVNA 122
Query: 158 ASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSA 191
+ +G A+ E+I TF L +F++TD +R++
Sbjct: 123 LNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS 157
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 79 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGL 138
I AFG I +Y ISG HINPAVT GL+ +K V Y++AQ LGA G +
Sbjct: 58 IGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFI 117
Query: 139 VKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSAR 192
++GG GA G + A+ AE++GTF+L+ T+ +R+ +
Sbjct: 118 FLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPK 172
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
S+++A++AE V T L + T++G A G + I G+I L I
Sbjct: 142 SYWQAMLAEVVGTFLLMI----TIMGIAVDERAPKGFAGIIIGLTVAGIITTL----GNI 193
Query: 98 SGGHINPAVTFGLFL 112
SG +NPA TFG +L
Sbjct: 194 SGSSLNPARTFGPYL 208
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 83/188 (44%), Gaps = 25/188 (13%)
Query: 12 HRHHHGKDYVDPPPAPLIDMA---ELKLWSF--------YRALIAEFVATLLFLYVS-VA 59
++ G+ + P AP I A W F + A+ EFV T LFL+ + V
Sbjct: 6 NQAADGQAEIKPEDAPYITNAYKPAYARWGFGSDSVRNHFIAMSGEFVGTFLFLWSAFVI 65
Query: 60 TVIGHKKQSDACGGVG---LLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116
I ++ GG L+ I++ FG + V V+ T +SGG++NPAVT L LAR +
Sbjct: 66 AQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAI 125
Query: 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEY---NSLGGGANTVASGYNKGSALGAEIIG 173
R + Q + + G A E N+LGGGA ++ L E G
Sbjct: 126 PPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGGGA-------SRTRGLFLEAFG 178
Query: 174 TFVLVYTV 181
T +L TV
Sbjct: 179 TAILCLTV 186
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 44 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 103
IAEF+ T L ++ V V K + A G + + W G + + +Y TAG+SG H+N
Sbjct: 12 IAEFLGTGLLIFFGVGCV-AALKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLN 68
Query: 104 PAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNK 163
PAVT L+L + + ++V+Q GA C LV + + + V +
Sbjct: 69 PAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIV-----R 123
Query: 164 GSALGAEIIGTF 175
GS ++ GTF
Sbjct: 124 GSVESVDLAGTF 135
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 44 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 103
IAEF+ T L ++ V V K A G I+ FG + + +Y TAG+SG H+N
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKV---AGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLN 68
Query: 104 PAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNK 163
PAVT L+L + + ++V+Q GA C LV + + + V +
Sbjct: 69 PAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIV-----R 123
Query: 164 GSALGAEIIGTF 175
GS ++ GTF
Sbjct: 124 GSVESVDLAGTF 135
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHE---------YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS 183
I L+ + + S G G ++ GY+ SAL E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHS-PGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 184 ATDPKRSARDSHVPVCI 200
ATD + A P+ I
Sbjct: 155 ATD--KFAPAGFAPIAI 169
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHE---------YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS 183
I L+ + + S G G ++ GY+ SAL E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHS-PGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 184 ATDPKRSARDSHVPVCI 200
ATD + A P+ I
Sbjct: 155 ATD--KFAPAGFAPIAI 169
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVAS---------GYNKGSALGAEIIGTFVLVYTVFS 183
I L+ + A+ AS GY+ SAL E++ + + +
Sbjct: 96 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 184 ATDPKRSARDSHVPVCI 200
ATD + A P+ I
Sbjct: 155 ATD--KFAPAGFAPIAI 169
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 92
Query: 133 ICGVGLVKAFMKHE---------YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS 183
I L+ + + S G G ++ GY+ SAL E++ + + +
Sbjct: 93 IVAAALLYLIASGKTGFDAAASGFASNGYGEHS-PGGYSMLSALVVELVLSAGFLLVIHG 151
Query: 184 ATDPKRSARDSHVPVCI 200
ATD + A P+ I
Sbjct: 152 ATD--KFAPAGFAPIAI 166
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 79 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGL 138
I AF I ++Y ISG HINPAVT L+ + V Y+VAQ +GA G L
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 139 VKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190
A + ++GG GA G G A+ E IGTF+L+ + +R+
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERA 171
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 41 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGG 100
+A++ E + T L + V + + + G L I GG+I + I+G
Sbjct: 146 QAILTEAIGTFLLMLVIMGVAVDERAPPGFAG----LVIGLTVGGIITTI----GNITGS 197
Query: 101 HINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY 147
+NPA TFG +L + I Y +G I VG V A + Y
Sbjct: 198 SLNPARTFGPYLGDSLMGINLWQYFPIYVIGPI--VGAVAAAWLYNY 242
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHE---------YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS 183
I L+ + + S G G ++ GY+ SAL E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHS-PGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 184 ATDPKRSARDSHVPVCI 200
ATD + A P+ I
Sbjct: 155 ATD--KFAPAGFAPIAI 169
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHE---------YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS 183
I L+ + + S G G ++ GY+ SAL E++ + + +
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHS-PGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 184 ATDPKRSARDSHVPVCI 200
ATD + A P+ I
Sbjct: 155 ATD--KFAPAGFAPIAI 169
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVAS---------GYNKGSALGAEIIGTFVLVYTVFS 183
I L+ + A+ AS GY+ SAL E++ + + +
Sbjct: 96 IVAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG 154
Query: 184 ATDPKRSARDSHVPVCI 200
ATD + A P+ I
Sbjct: 155 ATD--KFAPAGFAPIAI 169
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 41 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGG 100
R L+AEF T ++ + + + G+G G+A AFG + + Y GISGG
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPEL--GIGFTGVALAFGLTVLTMAYAVGGISGG 88
Query: 101 HINPAVTFGLFLARKVSLIRAVAYMV 126
H NPAV+ GL +A + V Y++
Sbjct: 89 HFNPAVSVGLTVAGRFPASSLVPYVI 114
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
S+ R I EF+ T + +++ + + G L + W G +F + +A +
Sbjct: 8 SYVREFIGEFLGTFVLMFLGEGAT-ANFHTTGLSGDWYKLCLGW--GLAVFFGILVSAKL 64
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 139
SG H+N AV+ GL K L + Y AQ LGA G V
Sbjct: 65 SGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTV 106
>pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric
Acid
Length = 396
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 157 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCISSPP 204
VAS Y+K L E +GT LV D S + + V SSPP
Sbjct: 240 VASSYSKNFGLYNERVGTCTLVAADSETVDRAFSQMKAAIRVNYSSPP 287
>pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
GLUTARIC ACID
pdb|1CZE|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH
SUCCINIC ACID
Length = 396
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 157 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCISSPP 204
VAS Y+K L E +GT LV D S + + V SSPP
Sbjct: 240 VASSYSKNFGLYNERVGTCTLVAADSETVDRAFSQMKAAIRVNYSSPP 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,384,115
Number of Sequences: 62578
Number of extensions: 254398
Number of successful extensions: 1672
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 47
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)