Query 028760
Match_columns 204
No_of_seqs 180 out of 1418
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 16:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0224 Aquaporin (major intri 100.0 7.4E-36 1.6E-40 249.4 9.7 159 35-195 27-199 (316)
2 KOG0223 Aquaporin (major intri 100.0 1.1E-34 2.4E-39 239.7 13.7 155 33-190 4-159 (238)
3 COG0580 GlpF Glycerol uptake f 100.0 7.8E-34 1.7E-38 234.2 15.0 153 38-190 3-162 (241)
4 PTZ00016 aquaglyceroporin; Pro 100.0 8.3E-33 1.8E-37 236.2 19.7 152 37-191 47-211 (294)
5 PLN00184 aquaporin NIP1; Provi 100.0 7.4E-33 1.6E-37 236.2 18.4 152 35-189 49-203 (296)
6 PF00230 MIP: Major intrinsic 100.0 5.3E-33 1.1E-37 229.5 16.6 160 33-192 1-163 (227)
7 PLN00182 putative aquaporin NI 100.0 1.4E-30 3.1E-35 220.9 19.6 147 36-189 38-184 (283)
8 PLN00167 aquaporin TIP5; Provi 100.0 1.6E-29 3.5E-34 212.1 18.7 156 32-191 14-171 (256)
9 PLN00026 aquaporin NIP; Provi 100.0 1.2E-29 2.6E-34 216.1 17.7 146 36-189 67-212 (298)
10 PRK05420 aquaporin Z; Provisio 100.0 1.6E-29 3.4E-34 209.5 17.3 148 40-189 2-157 (231)
11 PLN00166 aquaporin TIP2; Provi 100.0 4.7E-29 1E-33 208.7 18.2 153 33-189 11-165 (250)
12 PLN00027 aquaporin TIP; Provis 100.0 2.7E-28 5.8E-33 204.6 18.2 151 35-189 15-168 (252)
13 PLN00183 putative aquaporin NI 100.0 3.7E-28 8.1E-33 205.4 18.3 147 35-189 40-186 (274)
14 cd00333 MIP Major intrinsic pr 100.0 5.9E-28 1.3E-32 199.9 17.0 148 41-190 1-156 (228)
15 TIGR00861 MIP MIP family chann 100.0 3.8E-27 8.3E-32 193.6 15.8 146 45-190 1-148 (216)
16 PLN00182 putative aquaporin NI 99.7 2.6E-16 5.7E-21 133.8 10.1 98 38-144 157-254 (283)
17 cd00333 MIP Major intrinsic pr 99.7 2.8E-16 6.1E-21 130.1 9.1 99 37-141 127-227 (228)
18 PLN00026 aquaporin NIP; Provi 99.6 9.4E-16 2E-20 131.1 9.0 99 38-145 185-283 (298)
19 PLN00183 putative aquaporin NI 99.6 1.3E-15 2.7E-20 129.2 9.6 99 39-146 160-258 (274)
20 TIGR00861 MIP MIP family chann 99.6 4.8E-15 1E-19 121.8 8.2 95 38-138 120-215 (216)
21 KOG0223 Aquaporin (major intri 99.5 3.6E-14 7.8E-19 117.7 4.3 99 38-146 130-228 (238)
22 PLN00184 aquaporin NIP1; Provi 99.5 3.7E-13 8.1E-18 115.2 10.1 98 38-144 176-273 (296)
23 PLN00166 aquaporin TIP2; Provi 99.4 1.3E-12 2.9E-17 109.5 10.4 104 38-148 138-241 (250)
24 PLN00027 aquaporin TIP; Provis 99.4 4.7E-12 1E-16 106.4 11.0 101 38-145 140-240 (252)
25 PRK05420 aquaporin Z; Provisio 99.4 3.7E-12 8.1E-17 105.7 9.1 99 38-145 130-229 (231)
26 PTZ00016 aquaglyceroporin; Pro 99.3 7.3E-12 1.6E-16 107.4 8.8 103 37-146 181-292 (294)
27 PLN00167 aquaporin TIP5; Provi 99.3 1.4E-11 3E-16 103.7 8.2 102 38-147 142-243 (256)
28 PF00230 MIP: Major intrinsic 99.2 8.5E-11 1.8E-15 97.0 9.3 95 38-139 133-227 (227)
29 COG0580 GlpF Glycerol uptake f 99.2 1.5E-10 3.3E-15 96.1 8.9 100 37-144 133-240 (241)
30 KOG0224 Aquaporin (major intri 97.6 6.2E-05 1.3E-09 64.1 3.3 105 35-146 163-277 (316)
31 PRK10805 formate transporter; 84.3 26 0.00056 30.1 12.5 105 77-184 69-182 (285)
32 PF01226 Form_Nir_trans: Forma 73.4 54 0.0012 27.5 14.8 106 77-185 58-172 (250)
33 COG2116 FocA Formate/nitrite f 72.9 59 0.0013 27.7 16.1 108 75-184 63-179 (265)
34 PRK09713 focB putative formate 70.6 68 0.0015 27.5 12.0 103 78-185 69-182 (282)
35 TIGR00790 fnt formate/nitrite 65.9 77 0.0017 26.3 11.1 103 79-183 46-157 (239)
36 PF03169 OPT: OPT oligopeptide 52.0 2.2E+02 0.0047 27.1 11.3 23 160-182 464-486 (624)
37 PF03033 Glyco_transf_28: Glyc 51.2 5.7 0.00012 29.2 0.3 19 97-115 7-25 (139)
38 PRK12446 undecaprenyldiphospho 36.8 8.6 0.00019 33.7 -0.8 21 94-114 7-27 (352)
39 PF14990 DUF4516: Domain of un 31.7 1E+02 0.0023 19.1 3.7 35 114-148 3-37 (47)
40 PF03842 Silic_transp: Silicon 29.8 3.4E+02 0.0074 24.9 8.0 111 79-190 137-251 (512)
41 PF14034 Spore_YtrH: Sporulati 22.4 2.2E+02 0.0049 20.6 4.6 47 99-145 53-101 (102)
42 PF04632 FUSC: Fusaric acid re 21.2 2.7E+02 0.0059 26.1 6.3 48 97-144 362-412 (650)
43 PRK14213 camphor resistance pr 20.8 1.8E+02 0.0038 21.4 3.9 28 115-142 89-116 (118)
44 COG0730 Predicted permeases [G 20.2 4.9E+02 0.011 21.3 8.0 31 112-142 67-97 (258)
45 PF06084 Cytomega_TRL10: Cytom 20.0 1.1E+02 0.0023 22.8 2.6 29 170-198 64-92 (150)
No 1
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-36 Score=249.42 Aligned_cols=159 Identities=25% Similarity=0.418 Sum_probs=139.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhc
Q 028760 35 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 114 (204)
Q Consensus 35 ~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g 114 (204)
...++.|++++||+||++|++++++++.....+.. ....++.+.++||+++++.+|+.+.+||||+|||||+++++.|
T Consensus 27 i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g--~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g 104 (316)
T KOG0224|consen 27 IRNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGG--TGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG 104 (316)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhccceeEEEEeccC--CCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc
Confidence 45668999999999999999999998776655432 2446788899999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCc--------------cccCCCCchHHHHHHHHHHHHHHHHH
Q 028760 115 KVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGA--------------NTVASGYNKGSALGAEIIGTFVLVYT 180 (204)
Q Consensus 115 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~s~~~~f~~E~v~Tf~Lv~~ 180 (204)
|++|.|.++|+++|++||++|++.+|.+|++.++.+.++. +-|.+..+++++|+.|+++|.+|+++
T Consensus 105 ~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~ 184 (316)
T KOG0224|consen 105 RLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLC 184 (316)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999888765442 22567789999999999999999999
Q ss_pred HHHhccCCCCCCCCC
Q 028760 181 VFSATDPKRSARDSH 195 (204)
Q Consensus 181 i~~~~d~~~~~~~~~ 195 (204)
+++++|+||......
T Consensus 185 l~aI~D~rN~~p~g~ 199 (316)
T KOG0224|consen 185 LFAITDKRNPIPTGL 199 (316)
T ss_pred eeEEecCCCCCCcch
Confidence 999999999544433
No 2
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=239.68 Aligned_cols=155 Identities=55% Similarity=0.809 Sum_probs=139.4
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHH
Q 028760 33 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 112 (204)
Q Consensus 33 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~ 112 (204)
+..+++++|++++||++|++|+|++|+++..+... ....+.+.+++++|+.+++.+++++++||||+|||||+++++
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~ 80 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV 80 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---CCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence 44678899999999999999999999988776642 234568889999999999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHH-hccCCCC
Q 028760 113 ARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRS 190 (204)
Q Consensus 113 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~-~~d~~~~ 190 (204)
.|++++.++..|+++|++|+++|+++++.+.+..++....+.+.+.++.+.+|+++.|++.||.|++++++ .+|+|++
T Consensus 81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~ 159 (238)
T KOG0223|consen 81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS 159 (238)
T ss_pred hCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence 99999999999999999999999999999998864444556677889999999999999999999999998 8898887
No 3
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-34 Score=234.18 Aligned_cols=153 Identities=34% Similarity=0.548 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+..|++++||+||+++++++++++......+.+....+++.++++||+.+.+.+|+++++||+|+|||||+++++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 35678899999999999999998887766554455667888999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC------CCccccCCC-CchHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLG------GGANTVASG-YNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~------~~~~~~~~~-~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~~ 190 (204)
|++++.||++|++||++|+.++|.+|++++...+ .+..++.|+ .+..++|+.|+++||+|+++|++++|+++.
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~ 162 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999998877654 223333343 488999999999999999999998875544
No 4
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=8.3e-33 Score=236.15 Aligned_cols=152 Identities=28% Similarity=0.360 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhccc
Q 028760 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116 (204)
Q Consensus 37 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~ 116 (204)
++++|++++||+||++|+|++++++......+ ...+.+.+++++|+++++.+++++++||+|+|||||+++++.|++
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~---~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i 123 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVG---NNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKF 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccC---CCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccC
Confidence 56889999999999999999998765432211 123566789999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC-------------ccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 028760 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG-------------ANTVASGYNKGSALGAEIIGTFVLVYTVFS 183 (204)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~ 183 (204)
+|.+.+.|+++|++|+++|++++|.+|+++++..+.+ ...+.++.+..++|+.|+++||+|++++++
T Consensus 124 ~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila 203 (294)
T PTZ00016 124 PWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILA 203 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765433211 122345678899999999999999999999
Q ss_pred hccCCCCC
Q 028760 184 ATDPKRSA 191 (204)
Q Consensus 184 ~~d~~~~~ 191 (204)
++|+|++.
T Consensus 204 ~~d~~~~~ 211 (294)
T PTZ00016 204 ITDPNNCP 211 (294)
T ss_pred hccCccCC
Confidence 99987754
No 5
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=7.4e-33 Score=236.16 Aligned_cols=152 Identities=27% Similarity=0.394 Sum_probs=124.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhc
Q 028760 35 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 114 (204)
Q Consensus 35 ~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g 114 (204)
.+++++|++++||+|||+|+|++++++....... ...+++.++++||+++++.+++++++||+|+|||||+++++.|
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~---~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g 125 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQND---NVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCG 125 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhC
Confidence 4567899999999999999999998765432211 1235778899999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC---ccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028760 115 KVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG---ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (204)
Q Consensus 115 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~ 189 (204)
+++|.+.++||++|++||++|+++++.+++...+..... .....++.+.+++|+.|+++||+|+++++++.++++
T Consensus 126 ~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~ 203 (296)
T PLN00184 126 RFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNR 203 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCc
Confidence 999999999999999999999999999986543221111 112234458899999999999999999998765443
No 6
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=5.3e-33 Score=229.55 Aligned_cols=160 Identities=36% Similarity=0.525 Sum_probs=136.1
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC---CCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHH
Q 028760 33 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA---CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 109 (204)
Q Consensus 33 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~---~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla 109 (204)
|.++++++|++++||+||++++|+++++.........+ ....++..+++++|+.+.+.+++++++||+|+|||||++
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla 80 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLA 80 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhh
Confidence 35678899999999999999999999865533332211 112367789999999999999999999999999999999
Q ss_pred HHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028760 110 LFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (204)
Q Consensus 110 ~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~ 189 (204)
.++.|+++|.+++.|+++|++|+++|+.+++.++++.........+.+.++.+..++|+.|+++|++|+++++...|+++
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~ 160 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKR 160 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhccccc
Confidence 99999999999999999999999999999999998864444445566788899999999999999999999999999888
Q ss_pred CCC
Q 028760 190 SAR 192 (204)
Q Consensus 190 ~~~ 192 (204)
+..
T Consensus 161 ~~~ 163 (227)
T PF00230_consen 161 KFP 163 (227)
T ss_dssp SST
T ss_pred ccc
Confidence 765
No 7
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.97 E-value=1.4e-30 Score=220.90 Aligned_cols=147 Identities=25% Similarity=0.403 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcc
Q 028760 36 LWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 115 (204)
Q Consensus 36 ~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~ 115 (204)
.++++|++++||+|||+|+|++++++....... ...+.+.++++||+++++.+++++++||||+|||||+++++.|+
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~---~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~ 114 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYG---GTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRR 114 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---CCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcC
Confidence 467889999999999999999998766432211 12346778899999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028760 116 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (204)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~ 189 (204)
++|.++++||++|++|+++|+++++.+++... .+.....++.+.+++++.|+++|++|+++++++.++++
T Consensus 115 ~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~ 184 (283)
T PLN00182 115 FPWYQVPLYIGAQLTGSLLASLTLRLMFNVTP----EAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSR 184 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccc
Confidence 99999999999999999999999999885321 12223345568899999999999999999998654443
No 8
>PLN00167 aquaporin TIP5; Provisional
Probab=99.97 E-value=1.6e-29 Score=212.11 Aligned_cols=156 Identities=31% Similarity=0.423 Sum_probs=127.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHH
Q 028760 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 109 (204)
Q Consensus 32 ~~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~--~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla 109 (204)
++...++++|++++||+||++++|++++++..... .+++....+++.+++++|+.+++.+++++++||+|+|||||++
T Consensus 14 ~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~ 93 (256)
T PLN00167 14 QQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFG 93 (256)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHH
Confidence 34456778999999999999999999988764321 1111123357789999999999999999999999999999999
Q ss_pred HHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028760 110 LFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (204)
Q Consensus 110 ~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~ 189 (204)
.++.|+++|.+.+.|+++|++|+++|+.+++.++++... +.+...++.+..++++.|+++|++|+++++++.|+|+
T Consensus 94 ~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~~~~ 169 (256)
T PLN00167 94 MAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQHV----PTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRR 169 (256)
T ss_pred HHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccc----cccccCcccchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999988764211 1122234567789999999999999999999988876
Q ss_pred CC
Q 028760 190 SA 191 (204)
Q Consensus 190 ~~ 191 (204)
..
T Consensus 170 ~~ 171 (256)
T PLN00167 170 GL 171 (256)
T ss_pred cC
Confidence 43
No 9
>PLN00026 aquaporin NIP; Provisional
Probab=99.97 E-value=1.2e-29 Score=216.14 Aligned_cols=146 Identities=29% Similarity=0.436 Sum_probs=121.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcc
Q 028760 36 LWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 115 (204)
Q Consensus 36 ~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~ 115 (204)
..+++|++++||+|||+|+|++++.+....... ...+++.+++++|+++++.+++++++||||+|||||+++++.|+
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~---~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~ 143 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYD---GAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRH 143 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCC
Confidence 456889999999999999999987644322111 12356778899999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028760 116 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (204)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~ 189 (204)
++|.+.++||++|++|+++|+++++.++++... .+. ..++.+.+++++.|+++||+|+++++++.++++
T Consensus 144 ~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~---~g~--t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~ 212 (298)
T PLN00026 144 FPWKHVPAYIAAQVSASICASFALKGVFHPFMS---GGV--TVPSVSTGQAFALEFIITFNLLFVVTAVATDTR 212 (298)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---Cce--eeecccHHHHHHHHHHHHHHHHHhheeeecCCC
Confidence 999999999999999999999999999876321 122 235678999999999999999999997654433
No 10
>PRK05420 aquaporin Z; Provisional
Probab=99.97 E-value=1.6e-29 Score=209.54 Aligned_cols=148 Identities=28% Similarity=0.489 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchh
Q 028760 40 YRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLI 119 (204)
Q Consensus 40 ~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~ 119 (204)
+|++++||+||++|+|++++++......+ ..+.+.+.+++++|+.+++.+++++++||+|+|||||+++++.|+++|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~--~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFP--ELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccC--CCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHH
Confidence 68999999999999999998764322211 1223567789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhcC--CCc---c-ccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028760 120 RAVAYMVAQCLGAICGVGLVKAFMKHEY--NSLG--GGA---N-TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (204)
Q Consensus 120 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~--~~~~--~~~---~-~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~ 189 (204)
+.+.|+++|++|+++|+.+++.++++.. +..+ ... . ......+..++++.|+++|++|+++++...|+|+
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~ 157 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGATDKRA 157 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999998886532 1111 000 0 1123457899999999999999999999998765
No 11
>PLN00166 aquaporin TIP2; Provisional
Probab=99.97 E-value=4.7e-29 Score=208.74 Aligned_cols=153 Identities=37% Similarity=0.538 Sum_probs=124.7
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccC-CCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHH
Q 028760 33 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKK-QSD-ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 110 (204)
Q Consensus 33 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~-~~~-~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~ 110 (204)
|.+.++.+|++++||++|++|+|++++++..... ..+ .....+++.+++++|+.+++.+++++++||+|+|||||+++
T Consensus 11 ~~~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~ 90 (250)
T PLN00166 11 DSFSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGL 90 (250)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 3445778899999999999999999988664211 111 11123566789999999999999999999999999999999
Q ss_pred HHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028760 111 FLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (204)
Q Consensus 111 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~ 189 (204)
++.|+++|.+.++|+++|++|+++|+.+++.++++.- .......++.+..++++.|+++||+|+++++.+.+++|
T Consensus 91 ~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~ 165 (250)
T PLN00166 91 AIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGES----VPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPK 165 (250)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999998875421 11123445678899999999999999999998766544
No 12
>PLN00027 aquaporin TIP; Provisional
Probab=99.96 E-value=2.7e-28 Score=204.58 Aligned_cols=151 Identities=36% Similarity=0.531 Sum_probs=123.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHH
Q 028760 35 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQ--SDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 112 (204)
Q Consensus 35 ~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~--~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~ 112 (204)
..++.+|++++||++|++|+|++++++...... ..+....+.+.+++++|+.+++.+++++++||+|+|||+|+++++
T Consensus 15 ~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~ 94 (252)
T PLN00027 15 SHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFI 94 (252)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHH
Confidence 446689999999999999999999876532111 111112356678999999999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhc-cCCC
Q 028760 113 ARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAT-DPKR 189 (204)
Q Consensus 113 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~-d~~~ 189 (204)
.|+++|.+.++|+++|++|+++|+.+++.++++.. .+.....++.+.+++++.|+++||+|+++++.+. |+|+
T Consensus 95 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~ 168 (252)
T PLN00027 95 GGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE----TSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKK 168 (252)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cccccCCCCccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999987765321 1233345678899999999999999999999864 5554
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.96 E-value=3.7e-28 Score=205.36 Aligned_cols=147 Identities=24% Similarity=0.337 Sum_probs=122.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhc
Q 028760 35 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 114 (204)
Q Consensus 35 ~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g 114 (204)
.+.+.+|++++||++||+++|++++.+....... ...+++.+++++|+.+.+.+++++++||+|+|||||+++++.|
T Consensus 40 ~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~---~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g 116 (274)
T PLN00183 40 MDLNPARMVLAEMVGTFILMFCVCGIIASTQLSG---GEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFG 116 (274)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---CccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhc
Confidence 3456789999999999999999998765432211 1235667889999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 028760 115 KVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (204)
Q Consensus 115 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~ 189 (204)
+++|.+.++||++|++|+++|+.+++.+++... +.....+..+.+++++.|+++|++|+++++.+.++++
T Consensus 117 ~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-----~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~ 186 (274)
T PLN00183 117 HFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-----DLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQ 186 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----ccccCCCcccHHHHHHHHHHHHHHHHHhhheeecccc
Confidence 999999999999999999999999998886421 1122334456789999999999999999998877654
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.96 E-value=5.9e-28 Score=199.90 Aligned_cols=148 Identities=42% Similarity=0.671 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchhh
Q 028760 41 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120 (204)
Q Consensus 41 r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~ 120 (204)
|++++||+||++++|+++++........+ ...+++.++++||+.+.+.+++++++||+|+|||+|++.++.|+++|.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~--~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~ 78 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGG--ASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIR 78 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCC--CCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHH
Confidence 57899999999999999988765433211 1234667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCc--------cccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 028760 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGA--------NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (204)
Q Consensus 121 ~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~~ 190 (204)
.++|+++|++|+++|+.+++.+++++++..+... +.+.++.+.+++++.|+++|++|+++++.+.++++.
T Consensus 79 ~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~ 156 (228)
T cd00333 79 VIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNG 156 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 9999999999999999999999988766543221 235567789999999999999999999998887654
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.95 E-value=3.8e-27 Score=193.57 Aligned_cols=146 Identities=39% Similarity=0.660 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccccC-CC-CCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchhhHH
Q 028760 45 AEFVATLLFLYVSVATVIGHKKQSD-AC-GGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 122 (204)
Q Consensus 45 aEfigT~~lvf~~~~~~~~~~~~~~-~~-~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~ 122 (204)
+||+||++++|++++++........ +. ...+...+++++|+.+.+.+++++++||+|+|||||+++++.|+++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 5999999999999988765332211 11 112567789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 028760 123 AYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (204)
Q Consensus 123 ~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~~ 190 (204)
+|+++|++|+++|+.+++.++++.+...........++.+.+++++.|+++|++|+++++...+++++
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~ 148 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNR 148 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCC
Confidence 99999999999999999999887652211112223456789999999999999999999998887554
No 16
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.67 E-value=2.6e-16 Score=133.79 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+.++.+++|+++|++|++++++.+.... . ... ..++++|+.+++.+++.+++||+|+|||+|+++++.++ .
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~~~-~-----~~~--~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~ 227 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATDSR-A-----VGE--LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-R 227 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheeccc-c-----CCc--chhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-c
Confidence 3579999999999999999886543211 1 011 25788999999999999999999999999999999765 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMK 144 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 144 (204)
|.+.|+||++|++|+++|+++++.+..
T Consensus 228 ~~~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 228 YKGIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999888763
No 17
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.66 E-value=2.8e-16 Score=130.09 Aligned_cols=99 Identities=23% Similarity=0.225 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhccc
Q 028760 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116 (204)
Q Consensus 37 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~ 116 (204)
.+.+|.+++|+++|+++++.+++........ ......++.+|+.+..++++.+++||+|+|||++++.++.+++
T Consensus 127 ~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~------~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~ 200 (228)
T cd00333 127 VSNGNAFFVEFIGTFILVLVVFATTDDPNGP------PPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGL 200 (228)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccccccC------CCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhcc
Confidence 4568999999999999999998765321110 1222467889999999999999999999999999999999988
Q ss_pred --chhhHHHHHHHHHHHHHHHHHHHHH
Q 028760 117 --SLIRAVAYMVAQCLGAICGVGLVKA 141 (204)
Q Consensus 117 --~~~~~~~yi~aQ~lGa~~g~~~~~~ 141 (204)
+|.+.|+||++|++|+++|+++.+.
T Consensus 201 ~~~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 201 ARHWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred ccccceeehhhhHHHHHHHHHHHHHHh
Confidence 7999999999999999999987653
No 18
>PLN00026 aquaporin NIP; Provisional
Probab=99.63 E-value=9.4e-16 Score=131.06 Aligned_cols=99 Identities=26% Similarity=0.357 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+.++.++.||++|++|++++++..... ... .. ..++++|+.+++.+++.+++||+|+|||+|++.++.++ +
T Consensus 185 s~~~a~~~Efi~TfiLv~vi~~v~~~~-~~~-----~~--~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~-~ 255 (298)
T PLN00026 185 STGQAFALEFIITFNLLFVVTAVATDT-RAV-----GE--LAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG-N 255 (298)
T ss_pred cHHHHHHHHHHHHHHHHHhheeeecCC-CCc-----CC--ccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC-C
Confidence 468999999999999999987542111 110 11 24688999999999999999999999999999999876 8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 145 (204)
|...|+||++|++|+++|+++++.+...
T Consensus 256 ~~~~wVy~vaPilGAilga~ly~~~~~~ 283 (298)
T PLN00026 256 YRAIWIYLVAPTLGALAGAGTYTAVKLR 283 (298)
T ss_pred chheeHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999987776543
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.63 E-value=1.3e-15 Score=129.17 Aligned_cols=99 Identities=22% Similarity=0.350 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccch
Q 028760 39 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL 118 (204)
Q Consensus 39 ~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~ 118 (204)
.++.+++|+++|+++++.+++...... . . +. ..++.+|+.+.+.+++.+++||+|+|||+|++.++.+ .+|
T Consensus 160 ~~~~~~~E~v~T~iLv~~i~~~~~~~~-~--~----~~-~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~-~~~ 230 (274)
T PLN00183 160 CSSAFWVEFIATFIVMFLAASLTSQPQ-S--L----GH-LSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS-WDF 230 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhheeecccc-C--C----CC-ceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-CCh
Confidence 478999999999999999876543221 1 0 11 2367889999999999999999999999999999987 589
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028760 119 IRAVAYMVAQCLGAICGVGLVKAFMKHE 146 (204)
Q Consensus 119 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 146 (204)
.+.|+||++|++|+++|+++.+.++.+.
T Consensus 231 ~~~wvy~vapilGailaa~l~~~l~~~~ 258 (274)
T PLN00183 231 KDIWIYITAPTIGAVAGALMFHLLRLRT 258 (274)
T ss_pred hheehHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999987654
No 20
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.58 E-value=4.8e-15 Score=121.80 Aligned_cols=95 Identities=24% Similarity=0.261 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhc-cc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR-KV 116 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g-~~ 116 (204)
+.++.++.|+++|+++++..+......+.. . .....++.+|+.+...++..+.+||+|+|||++++.++.+ +.
T Consensus 120 ~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~-----~-~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~ 193 (216)
T TIGR00861 120 SSGQAFFVEFIGTAILVLVIFATTDPRNRV-----P-RGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLA 193 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHHheeecCCCCC-----C-CCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhccc
Confidence 568999999999999999988654321111 0 1114688899999999999999999999999999999975 58
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 028760 117 SLIRAVAYMVAQCLGAICGVGL 138 (204)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~g~~~ 138 (204)
+|.+.|+||++|++|+++|+.+
T Consensus 194 ~~~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 194 GWGNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred cccceeHHHHHHHHHHHHHHHh
Confidence 8999999999999999998865
No 21
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.6e-14 Score=117.66 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+.++.++.|++.||.++|..++.+..... . ...++.+|+.+.+.++..+++||+++|||+|++.++..+.
T Consensus 130 ~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~------~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~- 199 (238)
T KOG0223|consen 130 STGQGLVIEIILTFILVFTVFATATDPRR------S---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGS- 199 (238)
T ss_pred CcchhHHHHHHHHHHHhheeEEEeecCCC------c---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcC-
Confidence 34799999999999999998763322111 1 4568999999999999999999999999999999998774
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHE 146 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 146 (204)
|...|+||++|++|+++++++.+.++.++
T Consensus 200 w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 200 WDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred CCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999888765
No 22
>PLN00184 aquaporin NIP1; Provisional
Probab=99.46 E-value=3.7e-13 Score=115.22 Aligned_cols=98 Identities=22% Similarity=0.342 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+.++.++.|+++|++|+++.++...... . . + ...++.+|+.+.+.+++.+++||+.+|||++++..+... .
T Consensus 176 s~~~af~~E~i~TfvLv~~il~~~~~~~-~-----~-~-~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~-~ 246 (296)
T PLN00184 176 SDLQAFVMEFIVTFYLMFIISGVATDNR-A-----I-G-ELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG-C 246 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHheeccCc-C-----C-C-cchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh-c
Confidence 4689999999999999999886533211 0 0 1 134688999999999999999999999999999999654 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMK 144 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 144 (204)
|...|+||+++++|+++|+++.+.+..
T Consensus 247 ~~~~WVy~vgPilGa~laal~y~~l~~ 273 (296)
T PLN00184 247 YKGIWIYIVAPTLGAIAGAWVYNTVRY 273 (296)
T ss_pred ccccchHHhHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999887765
No 23
>PLN00166 aquaporin TIP2; Provisional
Probab=99.41 E-value=1.3e-12 Score=109.53 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+.+|.++.|+++|+++++..+......... . .....++.+|+.+...++..++.||+.+|||++++.++..+ .
T Consensus 138 ~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~----~--~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~-~ 210 (250)
T PLN00166 138 GAIEGVVMEIVVTFALVYTVYATAADPKKG----S--LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-D 210 (250)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccccc----c--cccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC-C
Confidence 468999999999999999988653211110 0 01135788899999999999999999999999999999765 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEYN 148 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~ 148 (204)
|...|+||+++++|+++|+++.+.++.+.++
T Consensus 211 ~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~ 241 (250)
T PLN00166 211 FSQIWIYWVGPLVGGALAGLIYGDVFIGSYA 241 (250)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhcccCC
Confidence 8899999999999999999998777655443
No 24
>PLN00027 aquaporin TIP; Provisional
Probab=99.37 E-value=4.7e-12 Score=106.39 Aligned_cols=101 Identities=20% Similarity=0.230 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+.++.++.|+++|+++++..+......... . .....++.+|+.+....+..+..||+.+|||++++..+... .
T Consensus 140 ~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~----~--~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~-~ 212 (252)
T PLN00027 140 GVWNAFVFEIVMTFGLVYTVYATAVDPKKG----D--LGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-T 212 (252)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccccC----C--ccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh-c
Confidence 468999999999999999987543221110 0 01145778888899999999999999999999999999765 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 145 (204)
|...|+||+++++|+++|+++.+.++.+
T Consensus 213 ~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 240 (252)
T PLN00027 213 WTNHWVYWAGPLIGGGIAGLVYELIFIG 240 (252)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999998888753
No 25
>PRK05420 aquaporin Z; Provisional
Probab=99.35 E-value=3.7e-12 Score=105.74 Aligned_cols=99 Identities=24% Similarity=0.303 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhc-cc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR-KV 116 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g-~~ 116 (204)
+..+.++.|+++|+++++..+..... .+ ..+ ..++.+|+.+....+..++.||+.+|||++++..+.. ..
T Consensus 130 ~~~~~~~~E~v~T~iLv~~i~~~~~~--~~-----~~~--~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~ 200 (231)
T PRK05420 130 SLLAALVCEVVLTAFFLLVILGATDK--RA-----PAG--FAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGW 200 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCC--CC-----CCc--chHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCC
Confidence 46899999999999999998865421 11 111 3578889999999999999999999999999999864 33
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028760 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (204)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 145 (204)
.+...|+||+++++|+++++++.+.++.+
T Consensus 201 ~~~~~wvy~vgP~~Ga~laa~~y~~l~~~ 229 (231)
T PRK05420 201 ALEQLWLFWVAPIVGAIIGGLIYRLLLEK 229 (231)
T ss_pred CccceEEeehHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999988877654
No 26
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.31 E-value=7.3e-12 Score=107.37 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHh---
Q 028760 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA--- 113 (204)
Q Consensus 37 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~--- 113 (204)
.+.++.++.|+++|+++++..+...... +.. ..+ ..++.+|+.+.+..++.+..||+.+|||++++..+.
T Consensus 181 ~s~~~a~~~E~i~T~iLv~~ila~~d~~--~~~---~~~--~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~ 253 (294)
T PTZ00016 181 EGNFYAIFSELILTAILLLVILAITDPN--NCP---AFN--YLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAI 253 (294)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCc--cCC---CcC--cccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHH
Confidence 3568999999999999999888653211 110 011 246778888888889999999999999999999986
Q ss_pred --cccchh----hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028760 114 --RKVSLI----RAVAYMVAQCLGAICGVGLVKAFMKHE 146 (204)
Q Consensus 114 --g~~~~~----~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 146 (204)
|+..|. ..|+||+++++|+++|+++.+.+..++
T Consensus 254 ~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 254 LWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred hccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 333454 479999999999999999988877654
No 27
>PLN00167 aquaporin TIP5; Provisional
Probab=99.27 E-value=1.4e-11 Score=103.68 Aligned_cols=102 Identities=23% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+.++.++.|+++|+++++..+..... .... . ....++.+|+.+....+..+..||+.+|||++++..+... +
T Consensus 142 s~~~~~~~E~i~T~~L~~~i~~~~~~--~~~~---~--~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~-~ 213 (256)
T PLN00167 142 TGFGASVLEGVLTFGLVYTVYAAGDP--RRGL---L--GAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG-S 213 (256)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccc--cccC---C--CCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc-C
Confidence 34788999999999999987754321 1100 0 1134677899999999999999999999999999999764 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEY 147 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~ 147 (204)
|...|+||+++++|+++++++...++.+..
T Consensus 214 ~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~ 243 (256)
T PLN00167 214 FKNQAVYWVGPLLGGAVAGLLYDNVVFPTQ 243 (256)
T ss_pred ccCcEEEeHHHHHHHHHHHHHHHHHhCCCc
Confidence 788899999999999999999888876543
No 28
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.20 E-value=8.5e-11 Score=96.99 Aligned_cols=95 Identities=26% Similarity=0.316 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccc
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~ 117 (204)
+.++.++.|+++|+++++............ ..+. ..++.+|+.+.+..+..+..||+.+|||++++..+....
T Consensus 133 s~~~~~~~E~~~t~il~~~i~~~~~~~~~~-----~~~~-~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~- 205 (227)
T PF00230_consen 133 SLGQAFFSEFIGTFILVLVILAVADDKRKF-----PLGP-LAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGI- 205 (227)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSTTSSS-----TSSG-GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH-
T ss_pred hhhhhhhhhhhhhhHHHhhhhhhccccccc-----cccc-ccceeEEEEEeecccccccccccccCchhhcCceeeccc-
Confidence 358899999999999999887654322111 1011 356778888888888889999999999999999997765
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 028760 118 LIRAVAYMVAQCLGAICGVGLV 139 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~ 139 (204)
|...|+||+++++|+++|++++
T Consensus 206 ~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 206 WDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEehHHHHHHHHHhhC
Confidence 9999999999999999998763
No 29
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.5e-10 Score=96.06 Aligned_cols=100 Identities=24% Similarity=0.260 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHh---
Q 028760 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA--- 113 (204)
Q Consensus 37 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~--- 113 (204)
++.++.++.|+++||+|++...+....... +.+ ..++.+|+.++....+.++.||..+|||++++..+.
T Consensus 133 ~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~------~~~--~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~ 204 (241)
T COG0580 133 YSLGQAFLIEFVGTFVLVLGILALTDDGNA------NAG--FAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSL 204 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhccCcc------ccc--chHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHh
Confidence 367899999999999999998765431110 111 457889999999999999999999999999999883
Q ss_pred -cccch----hhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028760 114 -RKVSL----IRAVAYMVAQCLGAICGVGLVKAFMK 144 (204)
Q Consensus 114 -g~~~~----~~~~~yi~aQ~lGa~~g~~~~~~~~~ 144 (204)
+...- ...|+||++|++|+++|+++.+.++.
T Consensus 205 ~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 205 AGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred cCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 31111 47999999999999999999887653
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=97.55 E-value=6.2e-05 Score=64.12 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCcchhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHh-
Q 028760 35 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA- 113 (204)
Q Consensus 35 ~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~- 113 (204)
...++++.++-||+||.+|+.+.+...... + .......++.+|+.+++.-.+.|--+|--+|||+.+++-+.
T Consensus 163 p~ls~~n~F~DqfigTa~L~~~l~aI~D~r--N-----~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~ 235 (316)
T KOG0224|consen 163 PHLSLWNGFFDQFIGTAMLVLCLFAITDKR--N-----PIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFT 235 (316)
T ss_pred hHhhhhHHHHHHHHHHHHHHhheeEEecCC--C-----CCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHH
Confidence 445689999999999999988776433211 1 11222467888999999999999999999999999986543
Q ss_pred ---c--c--cch--hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028760 114 ---R--K--VSL--IRAVAYMVAQCLGAICGVGLVKAFMKHE 146 (204)
Q Consensus 114 ---g--~--~~~--~~~~~yi~aQ~lGa~~g~~~~~~~~~~~ 146 (204)
| . +++ .-.|+-+++.++|+++|++++..+..-+
T Consensus 236 ~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig~h 277 (316)
T KOG0224|consen 236 SIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIGFH 277 (316)
T ss_pred HHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeeecc
Confidence 2 1 111 2245568899999999999988776543
No 31
>PRK10805 formate transporter; Provisional
Probab=84.26 E-value=26 Score=30.10 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhcCCC-
Q 028760 77 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK--HEYNSLGGG- 153 (204)
Q Consensus 77 ~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~~~~~~~- 153 (204)
+..++.+.+++.+.++.-+..--+ |-..+++ .+.||.+|.+.+-.|.-=++|=++|++++-.+.. .......+.
T Consensus 69 ll~~~~F~vGlilIvl~g~eLFTg--n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~~~ 145 (285)
T PRK10805 69 LVGGICFSLGLILCVVCGADLFTS--TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQW 145 (285)
T ss_pred HHHHHHHHHHHHHHHHhCcccchh--hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCccHH
Confidence 334555666666666664443222 5554443 5788899988875554444444444444322221 111000000
Q ss_pred ------ccccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 028760 154 ------ANTVASGYNKGSALGAEIIGTFVLVYTVFSA 184 (204)
Q Consensus 154 ------~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~ 184 (204)
......+.+.++.|+-=+.|-++.++.++..
T Consensus 146 ~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~ 182 (285)
T PRK10805 146 GLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001124578889988889999988888753
No 32
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=73.44 E-value=54 Score=27.49 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcCCC-
Q 028760 77 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH--EYNSLGGG- 153 (204)
Q Consensus 77 ~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~--~~~~~~~~- 153 (204)
+..++.+++++...++.-+..--+ |-.+.....+.|+.+|.+.+--|.-=.+|=++|++++-.+... .... ++.
T Consensus 58 l~~g~~F~~Gl~lIv~~g~eLfTg--n~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~-~~~~ 134 (250)
T PF01226_consen 58 LVGGLVFPIGLVLIVFLGGELFTG--NMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMS-SPAM 134 (250)
T ss_dssp HHHHHHHTHHHHHHHHHT---TTT--TCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGT-TTHH
T ss_pred HHHHHHHHHHHHHHHHhcchhccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc-cHHH
Confidence 445666666666666664443212 5555556677889999988766665566666666554443321 1110 000
Q ss_pred ------ccccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 028760 154 ------ANTVASGYNKGSALGAEIIGTFVLVYTVFSAT 185 (204)
Q Consensus 154 ------~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~ 185 (204)
.....-+.+.++.|+-=++|.++..+.++...
T Consensus 135 ~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~~ 172 (250)
T PF01226_consen 135 GEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLAF 172 (250)
T ss_dssp HHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112345789999999999999999888654
No 33
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=72.93 E-value=59 Score=27.72 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhcCCC
Q 028760 75 GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-EYNSLGGG 153 (204)
Q Consensus 75 ~~~~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~-~~~~~~~~ 153 (204)
..+.-++++++++.+.++.-+..--+ |=-........++++|++.+--|+-=.+|=++|++++-.++.- .......+
T Consensus 63 ~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~ 140 (265)
T COG2116 63 AKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANG 140 (265)
T ss_pred HHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 44556677777777777665543211 3223333345788999999888877777778877776666521 10001111
Q ss_pred cc--------ccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 028760 154 AN--------TVASGYNKGSALGAEIIGTFVLVYTVFSA 184 (204)
Q Consensus 154 ~~--------~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~ 184 (204)
.. .-.-+.+..+.|+-=++|-++.++.++..
T Consensus 141 ~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~ 179 (265)
T COG2116 141 QWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMS 179 (265)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00123466888888888888888877753
No 34
>PRK09713 focB putative formate transporter; Provisional
Probab=70.55 E-value=68 Score=27.49 Aligned_cols=103 Identities=10% Similarity=-0.033 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchhhHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 028760 78 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMV----AQCLGAICGVGLVKAFMKHEYNSLGGG 153 (204)
Q Consensus 78 ~~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~----aQ~lGa~~g~~~~~~~~~~~~~~~~~~ 153 (204)
.-++.+++++.+.++.-+..--++ =. ++.....|+++|++.+-.|. +-++|+++-+.+++.- +........
T Consensus 69 l~g~~F~vGLilIv~~g~ELfTgN--~~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s--~~~~~~~~~ 143 (282)
T PRK09713 69 VGGLCFTLGFILLAVCGTSLFTSS--VM-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFS--GLVMSENAM 143 (282)
T ss_pred HHHHHHHHHHHHHHHhCccccHHH--HH-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccccchh
Confidence 345556666666666644432222 12 22234688888888875444 5555555544443321 111000000
Q ss_pred -------ccccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 028760 154 -------ANTVASGYNKGSALGAEIIGTFVLVYTVFSAT 185 (204)
Q Consensus 154 -------~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~ 185 (204)
.....-+.+.++.|+--+.|-++.++.++...
T Consensus 144 ~~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~~ 182 (282)
T PRK09713 144 WGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMSY 182 (282)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00011245788999999999999999888543
No 35
>TIGR00790 fnt formate/nitrite transporter. symport. HCO2 - efflux may be driven by the membrane potential by a uniport mechanism or by H+ antiport.
Probab=65.92 E-value=77 Score=26.31 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhh--hh-hhcCC---
Q 028760 79 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH--EY-NSLGG--- 152 (204)
Q Consensus 79 ~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~--~~-~~~~~--- 152 (204)
.++.+.+++.+.++.-+..--+ |-......++.||.+|.+.+-.|.-=.+|=++|+.+.-.++.. .. +..+.
T Consensus 46 ~~~~F~~gl~~Iv~~g~eLfTg--n~~~~~~~~~~~~~~~~~~l~~w~~~~~gNlvG~~~~a~l~~~~~~~~~~~~~~~~ 123 (239)
T TIGR00790 46 GGATFPIGLILVVIAGSDLFTG--NTLFVTMALLRGKISWGDLLINWVVSWLGNLVGALFVAYLFSYLGGILTANGPWGV 123 (239)
T ss_pred HHHHHHHHHheeeeeCcccccc--chHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccHHHH
Confidence 3455555444444432222111 4333334466888998888777666666666666654443321 10 00000
Q ss_pred C---ccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 028760 153 G---ANTVASGYNKGSALGAEIIGTFVLVYTVFS 183 (204)
Q Consensus 153 ~---~~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~ 183 (204)
. ......+.+.++.|+-=+.+.++..+.++.
T Consensus 124 ~~~~~a~~K~~~~~~~~f~~gilcn~lV~lav~~ 157 (239)
T TIGR00790 124 GSLAIAEHKAHHTFVEAFFLGILCNWLVCLAVWM 157 (239)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000112457888888888888888887774
No 36
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=52.01 E-value=2.2e+02 Score=27.05 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=15.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 028760 160 GYNKGSALGAEIIGTFVLVYTVF 182 (204)
Q Consensus 160 ~~s~~~~f~~E~v~Tf~Lv~~i~ 182 (204)
+.+....|..|+++|++=.++..
T Consensus 464 ~~~Pr~~f~~Q~iG~~ig~~v~~ 486 (624)
T PF03169_consen 464 GIPPRAQFYAQIIGTIIGAFVAV 486 (624)
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888876555444
No 37
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=51.19 E-value=5.7 Score=29.19 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.2
Q ss_pred CCccccchHhHHHHHHhcc
Q 028760 97 ISGGHINPAVTFGLFLARK 115 (204)
Q Consensus 97 iSGah~NPavTla~~~~g~ 115 (204)
=|+||+||.+.++-.+..+
T Consensus 7 Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRR 25 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHhcc
Confidence 4789999999999998654
No 38
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=36.81 E-value=8.6 Score=33.69 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=17.1
Q ss_pred hcCCCccccchHhHHHHHHhc
Q 028760 94 TAGISGGHINPAVTFGLFLAR 114 (204)
Q Consensus 94 ~~~iSGah~NPavTla~~~~g 114 (204)
.+.-+|||+.||+.++-.+..
T Consensus 7 ~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 7 TGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EcCCcHHHHHHHHHHHHHHHh
Confidence 455689999999999988753
No 39
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=31.73 E-value=1e+02 Score=19.07 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 028760 114 RKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYN 148 (204)
Q Consensus 114 g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~ 148 (204)
++.+|.+-+....+-++--+.|+-++..+|.++.+
T Consensus 3 ~Gv~~~~yl~~~~~s~~sM~aGA~vVH~~ykPdlt 37 (47)
T PF14990_consen 3 AGVSWPSYLKSLVASLLSMLAGASVVHNIYKPDLT 37 (47)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhHHHHHHhCccCC
Confidence 34688888888888888889999999999987654
No 40
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=29.80 E-value=3.4e+02 Score=24.87 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccchHhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhcCCCc
Q 028760 79 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK----HEYNSLGGGA 154 (204)
Q Consensus 79 ~a~~~g~~v~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~----~~~~~~~~~~ 154 (204)
+-+..|++..+.....|..+ .+.|-+-..-=++...+-....+.-..-++-|-+=.+.++..++. +++..++.+.
T Consensus 137 IFL~~GlaMil~t~~lGQLt-tQVNAshcMlDyINnyFalFTlyvam~IEfsGvmHssYLIq~i~~~~sGKPI~SNE~Pr 215 (512)
T PF03842_consen 137 IFLDIGLAMILFTCVLGQLT-TQVNASHCMLDYINNYFALFTLYVAMAIEFSGVMHSSYLIQNILSALSGKPIESNEPPR 215 (512)
T ss_pred HhhccchHHHHHHHhhcccc-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCcccCCCcc
Confidence 44556666666666666664 567776666666666655555666666777787777766655443 3444444333
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 028760 155 NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (204)
Q Consensus 155 ~~~~~~~s~~~~f~~E~v~Tf~Lv~~i~~~~d~~~~ 190 (204)
+....-+-+++.++.=.++.|-+..++-+..+.+..
T Consensus 216 tg~~~~FFWgRvlmSl~ILgF~lAVtl~ALf~G~Tt 251 (512)
T PF03842_consen 216 TGFQFAFFWGRVLMSLAILGFCLAVTLVALFNGKTT 251 (512)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCce
Confidence 333334567888888888888888777776655444
No 41
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=22.40 E-value=2.2e+02 Score=20.61 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=33.8
Q ss_pred ccccchHhHHHHHH-hcc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028760 99 GGHINPAVTFGLFL-ARK-VSLIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (204)
Q Consensus 99 Gah~NPavTla~~~-~g~-~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 145 (204)
||-|.|-..+=--+ .|. .+..|=++|+++-++||=.|..+++++..+
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~~ 101 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTGG 101 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 46666665554433 333 256778899999999999999999887654
No 42
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.16 E-value=2.7e+02 Score=26.15 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=33.4
Q ss_pred CCcccc---chHhHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028760 97 ISGGHI---NPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK 144 (204)
Q Consensus 97 iSGah~---NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 144 (204)
-++|+. ..+|..+.+....-|......++.+.++|+.+|.+..+.+++
T Consensus 362 W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP 412 (650)
T PF04632_consen 362 WPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLP 412 (650)
T ss_pred CChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334554 334444444444557788889999999999999988888776
No 43
>PRK14213 camphor resistance protein CrcB; Provisional
Probab=20.77 E-value=1.8e+02 Score=21.43 Aligned_cols=28 Identities=7% Similarity=0.076 Sum_probs=22.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 028760 115 KVSLIRAVAYMVAQCLGAICGVGLVKAF 142 (204)
Q Consensus 115 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~ 142 (204)
+-.+.++..|+..+++++++++.+-+.+
T Consensus 89 ~~~~~~a~~y~~~s~~~gl~a~~~G~~l 116 (118)
T PRK14213 89 AKRVKESILYIALTLAGSLLAFWCGWTI 116 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999988775544
No 44
>COG0730 Predicted permeases [General function prediction only]
Probab=20.23 E-value=4.9e+02 Score=21.29 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=25.1
Q ss_pred HhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 028760 112 LARKVSLIRAVAYMVAQCLGAICGVGLVKAF 142 (204)
Q Consensus 112 ~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~ 142 (204)
-.++.+|+....+..+=++|+.+|+.+...+
T Consensus 67 k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~ 97 (258)
T COG0730 67 KRGNVDWKLALILLLGALIGAFLGALLALLL 97 (258)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467789999999999999999996666544
No 45
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=20.02 E-value=1.1e+02 Score=22.78 Aligned_cols=29 Identities=10% Similarity=0.318 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCce
Q 028760 170 EIIGTFVLVYTVFSATDPKRSARDSHVPV 198 (204)
Q Consensus 170 E~v~Tf~Lv~~i~~~~d~~~~~~~~~~~~ 198 (204)
-|++|.+.+++||.+...|....++....
T Consensus 64 sfiatliillviffviy~re~~~~~~gt~ 92 (150)
T PF06084_consen 64 SFIATLIILLVIFFVIYSREEEKNNNGTE 92 (150)
T ss_pred hHHHHHHHHHHHhheeEeccccccCCCce
Confidence 46788888888887555444444444333
Done!