Query 028760
Match_columns 204
No_of_seqs 136 out of 1418
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 18:17:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028760.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2253-2256//hhsearch_pdb/028760hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 1.0 1 1 262.6 17.3 200 1-202 24-223 (304)
2 3iyz_A Aquaporin-4; water tran 1.0 1 1 234.7 17.9 160 31-192 43-202 (340)
3 2zz9_A Aquaporin-4; water tran 1.0 1 1 223.4 17.3 160 31-192 4-163 (301)
4 3d9s_A Aquaporin-5, AQP-5; aqu 1.0 1 1 219.6 17.8 158 29-192 1-158 (266)
5 1j4n_A Aquaporin 1; membrane p 1.0 1 1 219.4 16.6 160 32-192 3-166 (271)
6 3gd8_A Aquaporin-4; proton exc 1.0 1 1 219.1 17.5 153 38-192 2-154 (223)
7 3llq_A Aquaporin Z 2; aquapori 1.0 1 1 218.0 16.0 153 35-190 25-184 (256)
8 2w2e_A AQY1, aquaporin, aquapo 1.0 1 1 217.7 17.4 152 35-190 40-195 (279)
9 1ldf_A Glycerol uptake facilit 1.0 1 1 212.3 15.8 152 37-191 5-173 (281)
10 2b6o_A Aquaporin-0, lens fiber 1.0 1 1 211.0 19.1 155 32-192 2-156 (263)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=1.00 E-value=1 Score=262.60 Aligned_cols=200 Identities=82% Similarity=1.350 Sum_probs=168.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 96200136964447899898899998754510110189999999999999999999889853244566888885246899
Q 028760 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIA 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
|.|++.++ | +..++.||..+|+++...+..|.++++++|++++||+||++|+|+++++++......++....+++.++
T Consensus 24 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~ia 101 (304)
T 3cn5_A 24 MSKEVSEE-A-QAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIA 101 (304)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHH
T ss_pred HHHHHHCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEH
T ss_conf 98876303-3-355667776679861015853112488999999999999999999767775731345778887723311
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999983588755554186899998225531268999888887787998999997301222128985435888
Q 028760 81 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASG 160 (204)
Q Consensus 81 ~~~g~~v~~~i~~~~~isGahlNPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
+++|+.+++.+|+++++||+|+|||||+++++.|+++|.+++.|+++|++||++|+.++|.++++.++..+.+.+.+.++
T Consensus 102 la~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~ 181 (304)
T 3cn5_A 102 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALG 181 (304)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTT
T ss_pred HHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 23353342002576236777358188899998078989999999999999999999999998210454326763456887
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCC
Q ss_conf 864899999999999999999876169998999999610159
Q 028760 161 YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVCISS 202 (204)
Q Consensus 161 ~s~~~~f~~E~i~Tf~l~~~il~~~~~~~~~~~~~~~~l~p~ 202 (204)
.+..++|+.|+++||+|+++|+.++|+++...+++.|.++|+
T Consensus 182 ~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl 223 (304)
T 3cn5_A 182 YNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPL 223 (304)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHH
T ss_conf 657889999999999999887630057667777666641689
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=234.71 Aligned_cols=160 Identities=38% Similarity=0.586 Sum_probs=136.1
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 10110189999999999999999999889853244566888885246899999999999999835887555541868999
Q 028760 31 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 110 (204)
Q Consensus 31 ~~~~~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTla~ 110 (204)
.++...+++||++++||+||++|+|+++|++++.. ...+....+++.++++||+++++.+|+++++||+|+|||||+++
T Consensus 43 ~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~-~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal 121 (340)
T 3iyz_A 43 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWG-GSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAM 121 (340)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCEECHHHHHHH
T ss_conf 42102199999999999999999999999997155-67788875349999999999988605701157570581979999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98225531268999888887787998999997301222128985435888864899999999999999999876169998
Q 028760 111 FLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (204)
Q Consensus 111 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~~~~ 190 (204)
++.|+++|.+++.|+++|++||++|+.+++.++++.... ..+.+.+.++.+..++|+.|+++||+|+++|+++.|+++.
T Consensus 122 ~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~ 200 (340)
T 3iyz_A 122 VCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRT 200 (340)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCC-CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 985999799979999999989999989999725121147-5011158986578999999999999999999986257667
Q ss_pred CC
Q ss_conf 99
Q 028760 191 AR 192 (204)
Q Consensus 191 ~~ 192 (204)
..
T Consensus 201 ~~ 202 (340)
T 3iyz_A 201 DV 202 (340)
T ss_pred CC
T ss_conf 75
No 3
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=1.00 E-value=1 Score=223.44 Aligned_cols=160 Identities=38% Similarity=0.581 Sum_probs=136.4
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 10110189999999999999999999889853244566888885246899999999999999835887555541868999
Q 028760 31 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 110 (204)
Q Consensus 31 ~~~~~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTla~ 110 (204)
.++..+.+++|.+++||+||++|+|++++++++.... .+....+++.+++++|+.+++.+|+++++||+|+|||||+++
T Consensus 4 ~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~-~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~ 82 (301)
T 2zz9_A 4 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-ENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAM 82 (301)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECHHHHHHH
T ss_conf 1012568899999999999999999999999303557-788874259999999999987631223577653471999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98225531268999888887787998999997301222128985435888864899999999999999999876169998
Q 028760 111 FLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (204)
Q Consensus 111 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~~~~ 190 (204)
++.|+++|.+++.|+++|++||++|+.++|.++++.... ..+.+.+.++.+..++|+.|+++||+|+++++++.|+++.
T Consensus 83 ~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~-~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~ 161 (301)
T 2zz9_A 83 VCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRT 161 (301)
T ss_dssp HHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGG-TSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 995589899999999999999999999999744500047-4464048754214789999999999999999986077788
Q ss_pred CC
Q ss_conf 99
Q 028760 191 AR 192 (204)
Q Consensus 191 ~~ 192 (204)
..
T Consensus 162 ~~ 163 (301)
T 2zz9_A 162 DV 163 (301)
T ss_dssp CC
T ss_pred CC
T ss_conf 76
No 4
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=219.57 Aligned_cols=158 Identities=33% Similarity=0.534 Sum_probs=136.2
Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 45101101899999999999999999998898532445668888852468999999999999998358875555418689
Q 028760 29 IDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTF 108 (204)
Q Consensus 29 ~~~~~~~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTl 108 (204)
|..+|.++++++|.+++||+||++|+|++++++..... ...+++.+++++|+.+++.+|+++++||+|+|||||+
T Consensus 1 ~~~~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~~-----~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTl 75 (266)
T 3d9s_A 1 MSKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPS-----ALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITL 75 (266)
T ss_dssp -CHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS-----SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHH
T ss_conf 97456307589999999999999999999999737888-----8741899999999999999999724675248779999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99982255312689998888877879989999973012221289854358888648999999999999999998761699
Q 028760 109 GLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPK 188 (204)
Q Consensus 109 a~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~~ 188 (204)
++++.|+++|.+++.|+++|++||++|+.+++.++++.... ..+.+.+.++.+..++|+.|+++||+|++++++++|++
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~-~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~ 154 (266)
T 3d9s_A 76 ALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARG-NLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSR 154 (266)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99995489799999999999989999999999872402357-41211687542478889999999999999999983666
Q ss_pred CCCC
Q ss_conf 9899
Q 028760 189 RSAR 192 (204)
Q Consensus 189 ~~~~ 192 (204)
+...
T Consensus 155 ~~~~ 158 (266)
T 3d9s_A 155 RTSP 158 (266)
T ss_dssp CCSC
T ss_pred CCCC
T ss_conf 7876
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=1.00 E-value=1 Score=219.36 Aligned_cols=160 Identities=37% Similarity=0.623 Sum_probs=133.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 011018999999999999999999988985324456----6888885246899999999999999835887555541868
Q 028760 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQ----SDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVT 107 (204)
Q Consensus 32 ~~~~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavT 107 (204)
+|.++++++|++++||+||++|+|++++++...... +.+....+++.+++++|+.+++.+|+++++||+|+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHH
T ss_conf 10115789999999999999999999999986301244566667554339999999999999999971677365758999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998225531268999888887787998999997301222128985435888864899999999999999999876169
Q 028760 108 FGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDP 187 (204)
Q Consensus 108 la~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~ 187 (204)
+++++.|+++|.+++.|+++|++|+++|+.+++.++++... ...+.+.+.++.+..++|+.|+++||+|+++++++.|+
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~ 161 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDR 161 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT-CCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999289989999999999999999999999998157864-33134557876435889999999999999998750466
Q ss_pred CCCCC
Q ss_conf 99899
Q 028760 188 KRSAR 192 (204)
Q Consensus 188 ~~~~~ 192 (204)
++...
T Consensus 162 ~~~~~ 166 (271)
T 1j4n_A 162 RRRDL 166 (271)
T ss_dssp SCCCC
T ss_pred CCCCC
T ss_conf 67776
No 6
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=219.15 Aligned_cols=153 Identities=38% Similarity=0.615 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999999999999999998898532445668888852468999999999999998358875555418689999822553
Q 028760 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (204)
Q Consensus 38 ~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTla~~~~g~~~ 117 (204)
++||++++||+||++|++++++++.+.. .+.+....+++.+++++|+.+++.+|+++++||+|+|||||+++++.|+++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~-~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~ 80 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWG-GTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTT-TTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECHHHHHHHHHCCCCC
T ss_conf 7899999999999999999999997155-578888755599999999999999832004661667579999999918998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 126899988888778799899999730122212898543588886489999999999999999987616999899
Q 028760 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSAR 192 (204)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~~~~~~ 192 (204)
|.+++.|+++|++|+++|+.++|.+++++... ..+.+.+.++.+..++|+.|+++||+|+++++.+.|++++..
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~ 154 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDV 154 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999625533246-511225998647899999999999999999999825666775
No 7
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=1.00 E-value=1 Score=217.99 Aligned_cols=153 Identities=30% Similarity=0.462 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 01899999999999999999998898532445668888852468999999999999998358875555418689999822
Q 028760 35 KLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 114 (204)
Q Consensus 35 ~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTla~~~~g 114 (204)
...+++|++++||+||++|++++|+++......+ ..+.+++.++++||+.+++.+|+++++||+|+|||||+++++.|
T Consensus 25 ~~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~--~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g 102 (256)
T 3llq_A 25 QSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP--ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAG 102 (256)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHEEECCCCCEECHHHHHHHHHHC
T ss_conf 1999999999999999999999999998713488--87743799999999999999804306660657569999999966
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 55312689998888877879989999973012--221289-----85435888864899999999999999999876169
Q 028760 115 KVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSLGG-----GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDP 187 (204)
Q Consensus 115 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~--~~~~~~-----~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~ 187 (204)
+++|.+++.|+++|++|+++|+.+++.++++. ++..+. +++ .+.+.+..++|+.|+++||+|+++++++.|+
T Consensus 103 ~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t-~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d~ 181 (256)
T 3llq_A 103 RFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEH-SPGGYSLVSALLIEIILTAFFLIVILGSTHG 181 (256)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGG-STTCCCHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 898999999999999999999999999807762223356654540246-8764578999999999999999999996377
Q ss_pred CCC
Q ss_conf 998
Q 028760 188 KRS 190 (204)
Q Consensus 188 ~~~ 190 (204)
++.
T Consensus 182 ~~~ 184 (256)
T 3llq_A 182 RVP 184 (256)
T ss_dssp TSC
T ss_pred CCC
T ss_conf 777
No 8
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=1.00 E-value=1 Score=217.66 Aligned_cols=152 Identities=28% Similarity=0.418 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 0189999999999999999999889853--2445--66888885246899999999999999835887555541868999
Q 028760 35 KLWSFYRALIAEFVATLLFLYVSVATVI--GHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 110 (204)
Q Consensus 35 ~~~~~~~~~~~EfigT~~lvf~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTla~ 110 (204)
+.++.+|++++||+||++|+|++++++. +... .+.+....+++.+++++|+.+++.+|+++++||+|+|||||+++
T Consensus 40 ~~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~ 119 (279)
T 2w2e_A 40 SVRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLAL 119 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 89999999999999999999999999999512233455678774379999999999999999986047665081999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98225531268999888887787998999997301222128985435888864899999999999999999876169998
Q 028760 111 FLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (204)
Q Consensus 111 ~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~~~~ 190 (204)
++.|+++|.+++.|+++|++||++|+.+++.++++... ..+.+.++.+..++|+.|+++||+|+++++.+.+++++
T Consensus 120 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 120 VLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE----EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98379989999999999999999999999998266413----41158865337889999999999999999987057887
No 9
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=1.00 E-value=1 Score=212.33 Aligned_cols=152 Identities=27% Similarity=0.380 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 89999999999999999999889853244566888885246899999999999999835887555541868999982255
Q 028760 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116 (204)
Q Consensus 37 ~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTla~~~~g~~ 116 (204)
.+++|++++||+||++|+|++++++......+. ..+.+.+++++|+.+++.+|+++++||+|+|||||+++++.|++
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~---~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 81 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACF 81 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHEECCCCCCEECHHHHHHHHHCCCC
T ss_conf 789999999999999999999999987650688---77607999999999987742330457674173989999990799
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 31268999888887787998999997301222128-----------------9854358888648999999999999999
Q 028760 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLG-----------------GGANTVASGYNKGSALGAEIIGTFVLVY 179 (204)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~~~f~~E~i~Tf~l~~ 179 (204)
+|.+++.|+++|++|+++|+.++|.+++++++..+ ..++.+.++.+..++|+.|+++||+|++
T Consensus 82 ~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~ 161 (281)
T 1ldf_A 82 DKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161 (281)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999998412665305531112565321110131104688655589999999999999999
Q ss_pred HHHHHCCCCCCC
Q ss_conf 998761699989
Q 028760 180 TVFSATDPKRSA 191 (204)
Q Consensus 180 ~il~~~~~~~~~ 191 (204)
+++++.|+++..
T Consensus 162 ~il~~~d~~~~~ 173 (281)
T 1ldf_A 162 LILALTDDGNGV 173 (281)
T ss_dssp HHHHHHCTTSSS
T ss_pred HHHHHHCCCCCC
T ss_conf 999972567887
No 10
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=1.00 E-value=1 Score=211.00 Aligned_cols=155 Identities=35% Similarity=0.565 Sum_probs=133.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 01101899999999999999999998898532445668888852468999999999999998358875555418689999
Q 028760 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 111 (204)
Q Consensus 32 ~~~~~~~~~~~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~isGahlNPavTla~~ 111 (204)
+|.++++++|.+++||+||++|++++++++.... ....+++.+++++|+.+++.+++++++||+|+|||||++++
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~~-----~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~ 76 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRWA-----PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFL 76 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----SSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHH
T ss_conf 5421257999999999999999999999985577-----88754399999999999999999615676745729899999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 82255312689998888877879989999973012221289854358888648999999999999999998761699989
Q 028760 112 LARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA 191 (204)
Q Consensus 112 ~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~E~i~Tf~l~~~il~~~~~~~~~ 191 (204)
+.|+++|.+++.|+++|++|+++|+.+++.++++++.. ..+.+.+.++.+..++|+.|+++||+|+++++++.|++++.
T Consensus 77 ~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~ 155 (263)
T 2b6o_A 77 VGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155 (263)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSCS
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 93688899999999999889999999999982200024-43666688641178899999999999999999970556787
Q ss_pred C
Q ss_conf 9
Q 028760 192 R 192 (204)
Q Consensus 192 ~ 192 (204)
.
T Consensus 156 ~ 156 (263)
T 2b6o_A 156 R 156 (263)
T ss_dssp S
T ss_pred C
T ss_conf 7
Done!