Query 028761
Match_columns 204
No_of_seqs 172 out of 497
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 18:23:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028761.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2253-2256//hhsearch_pdb/028761hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 1.0 1 1 218.6 9.2 97 71-203 2-102 (102)
2 3mce_A Nascent polypeptide-ass 1.0 1 1 136.6 4.1 57 70-126 5-61 (61)
3 3mcb_A Nascent polypeptide-ass 1.0 1 1 130.2 5.3 54 72-125 1-54 (54)
4 3lkx_A Transcription factor BT 1.0 1 1 74.4 6.9 49 78-126 1-49 (66)
5 3mcb_B Transcription factor BT 1.0 1 1 74.3 6.7 49 78-126 1-49 (58)
6 1wj7_A Hypothetical protein (R 1.0 1 1 62.1 3.8 37 167-203 40-76 (104)
7 2cp9_A EF-TS, EF-TSMT, elongat 1.0 1 1 51.1 4.7 41 163-203 6-46 (64)
8 1z96_A DNA-damage, UBA-domain 1.0 1 1 33.0 3.8 35 167-202 5-39 (40)
9 1wgn_A UBAP1, ubiquitin associ 1.0 1 1 27.2 2.9 32 167-199 20-51 (63)
10 1wji_A Tudor domain containing 1.0 1 1 27.0 3.9 38 164-202 7-44 (63)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=1.00 E-value=1 Score=218.57 Aligned_cols=97 Identities=37% Similarity=0.563 Sum_probs=89.8
Q ss_pred HHHHHCCC--CCCCCCEEEEEEECCCEEEEECCCEEEE--ECCCCEEEEECCCEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99997399--0069922899994082689970983786--1799679995330314201489999999714999875568
Q 028761 71 KAMLKLGM--KPIPGVSRVTVKKSKNILFVISKPDVFK--SPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVS 146 (204)
Q Consensus 71 k~lkKLGl--k~I~gV~rVtIkk~~~~~fvI~~PeV~k--s~gs~tYvVFGeak~ed~s~q~~~~aae~~~~~~~~~~~~ 146 (204)
|||+|||| ++|+||+||+||+++ .+|+|++|+||+ +||++||+|||+++.+++.
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~--------------------- 59 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE--------------------- 59 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred CHHHHCCCCCEECCCCEEEEEEECC-EEEEECCCEEEEECCCCCCEEEEECCCEEECCC---------------------
T ss_conf 0698869985247983899999688-799977987999717997589998673462266---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 887665556742112489996328788986189999999999982993999885012
Q 028761 147 KPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 147 ~~~~~~~~~~~eevd~~gi~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt 203 (204)
+ +++|+++||+|||+|+||||++|++||+++|||||+|||.||
T Consensus 60 -----------~---e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 60 -----------A---EMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp -----------E---ECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred -----------C---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf -----------5---579899999999998598999999999984897999999759
No 2
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=136.60 Aligned_cols=57 Identities=65% Similarity=1.092 Sum_probs=54.2
Q ss_pred HHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCEEEEECCCEECCHHH
Q ss_conf 999997399006992289999408268997098378617996799953303142014
Q 028761 70 RKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 126 (204)
Q Consensus 70 rk~lkKLGlk~I~gV~rVtIkk~~~~~fvI~~PeV~ks~gs~tYvVFGeak~ed~s~ 126 (204)
|++|+||||++|+||+||+||+++|++|+|++|+||++|+++||+|||+++++|+++
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q 61 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred HHHHHHCCCEECCCEEEEEEEECCCEEEEECCCCEEECCCCCEEEEECCCCCCCCCC
T ss_conf 899987599677997999999269879997797388738998099981432055779
No 3
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=1.00 E-value=1 Score=130.24 Aligned_cols=54 Identities=72% Similarity=1.188 Sum_probs=51.8
Q ss_pred HHHHCCCCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCEEEEECCCEECCHH
Q ss_conf 999739900699228999940826899709837861799679995330314201
Q 028761 72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125 (204)
Q Consensus 72 ~lkKLGlk~I~gV~rVtIkk~~~~~fvI~~PeV~ks~gs~tYvVFGeak~ed~s 125 (204)
+|+||||++|+||+||+||+++|++|+|++|+||++|+++||+|||+++++|+|
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~ 54 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred CCCCCCCEECCCEEEEEEEECCCEEEEECCCCEEECCCCCEEEEECCEEECCCC
T ss_conf 952019878799799999927988999779748974899839998240506589
No 4
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=74.44 Aligned_cols=49 Identities=22% Similarity=0.431 Sum_probs=45.3
Q ss_pred CCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCEEEEECCCEECCHHH
Q ss_conf 9006992289999408268997098378617996799953303142014
Q 028761 78 MKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 126 (204)
Q Consensus 78 lk~I~gV~rVtIkk~~~~~fvI~~PeV~ks~gs~tYvVFGeak~ed~s~ 126 (204)
+..|+||+||+|+|.++++|+|++|.|+.++.+|||+|+|.++.++++.
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e 49 (66)
T 3lkx_A 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (66)
T ss_dssp CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred CCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCEEEECCCCEEEEHHH
T ss_conf 9666770489999529989993683148841447368547888758889
No 5
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=74.30 Aligned_cols=49 Identities=22% Similarity=0.431 Sum_probs=45.3
Q ss_pred CCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCEEEEECCCEECCHHH
Q ss_conf 9006992289999408268997098378617996799953303142014
Q 028761 78 MKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 126 (204)
Q Consensus 78 lk~I~gV~rVtIkk~~~~~fvI~~PeV~ks~gs~tYvVFGeak~ed~s~ 126 (204)
+..|+||+||+|+|.++++|+|++|.|+.++.+|||+|+|.++.++++.
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e 49 (58)
T 3mcb_B 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (58)
T ss_dssp CCEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred CCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCEEEEECCCEEEEHHH
T ss_conf 9656771599999539989994684068840426489866883018889
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=62.05 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 6328788986189999999999982993999885012
Q 028761 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt 203 (204)
+++|++||++||||++.|++||.++||||..||+.|-
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll 76 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 76 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8999999986298999999999994998999999998
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=1.00 E-value=1 Score=51.12 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 89996328788986189999999999982993999885012
Q 028761 163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 163 ~gi~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt 203 (204)
..|+.++|+.+.++||++...+.+||.++||||..||..|.
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 65799999999999698899999999994999999999999
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=32.98 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 632878898618999999999998299399988501
Q 028761 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
++.|..+|+. |.+++.|++||+.++||+-.|+--|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999873-9799999999999099999999977
No 9
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=27.19 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 632878898618999999999998299399988
Q 028761 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
++.|+.++ --|.|+..|++|||.++|+|-.|.
T Consensus 20 ~e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa 51 (63)
T 1wgn_A 20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQIL 51 (63)
T ss_dssp HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHH-HCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999-808889999999998389999999
No 10
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=27.04 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999632878898618999999999998299399988501
Q 028761 164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 164 gi~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
+++++.|+.+++ -|.+|+.|++||+.++||+=.|+--|
T Consensus 7 ~~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L 44 (63)
T 1wji_A 7 GVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVL 44 (63)
T ss_dssp SSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 889999999999-39999999999999598999999999
Done!