Query 028762
Match_columns 204
No_of_seqs 164 out of 489
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 18:28:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028762.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2253-2256//hhsearch_pdb/028762hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 1.0 1 1 221.3 9.0 97 69-203 2-102 (102)
2 3mce_A Nascent polypeptide-ass 1.0 1 1 141.8 4.1 57 68-124 5-61 (61)
3 3mcb_A Nascent polypeptide-ass 1.0 1 1 135.4 5.3 54 70-123 1-54 (54)
4 3lkx_A Transcription factor BT 1.0 1 1 73.0 6.9 50 76-125 1-50 (66)
5 3mcb_B Transcription factor BT 1.0 1 1 72.9 6.7 50 76-125 1-50 (58)
6 1wj7_A Hypothetical protein (R 1.0 1 1 62.8 3.9 37 167-203 40-76 (104)
7 2cp9_A EF-TS, EF-TSMT, elongat 1.0 1 1 51.3 4.7 41 163-203 6-46 (64)
8 1z96_A DNA-damage, UBA-domain 1.0 1 1 33.5 3.9 35 167-202 5-39 (40)
9 1wgn_A UBAP1, ubiquitin associ 1.0 1 1 28.7 2.2 32 167-199 20-51 (63)
10 1wji_A Tudor domain containing 1.0 1 1 27.7 4.0 38 164-202 7-44 (63)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=1.00 E-value=1 Score=221.27 Aligned_cols=97 Identities=37% Similarity=0.555 Sum_probs=90.0
Q ss_pred HHHHHCCC--CCCCCCEEEEEEECCCEEEEECCCEEEE--ECCCCEEEEECCCEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99997399--2079932899994093689970983786--0899769995121223210589999998708999999988
Q 028762 69 KAMLKLGM--KPIPGVSRVTVKKSKNILFVISKPDVFK--SPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNV 144 (204)
Q Consensus 69 K~LkKLGl--k~I~gV~rVtIkk~~~~~fvI~~P~V~k--s~gs~TYvVfGeak~~d~s~q~q~~aae~~~~~~~~~~~~ 144 (204)
|||+|||| ++|+||+||+|++.+ .+|+|++|+||+ +||++||+|||+++.+++.
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~--------------------- 59 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE--------------------- 59 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred CHHHHCCCCCEECCCCEEEEEEECC-EEEEECCCEEEEECCCCCCEEEEECCCEEECCC---------------------
T ss_conf 0698869985247983899999688-799977987999717997589998673462266---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 89988765546742112489995128788975099989999999981993899885012
Q 028762 145 ASKPESSAMAQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 145 ~~~~~~~~~~~~~eevd~~gi~eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~Lt 203 (204)
+ +++++++||+|||+|+||||++|++||++||||||+|||.||
T Consensus 60 -------------~---e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 60 -------------A---EMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp -------------E---ECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred -------------C---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf -------------5---579899999999998598999999999984897999999759
No 2
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=141.79 Aligned_cols=57 Identities=70% Similarity=1.103 Sum_probs=54.4
Q ss_pred HHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCEEEEECCCEECCHHH
Q ss_conf 999997399207993289999409368997098378608997699951212232105
Q 028762 68 RKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSS 124 (204)
Q Consensus 68 rK~LkKLGlk~I~gV~rVtIkk~~~~~fvI~~P~V~ks~gs~TYvVfGeak~~d~s~ 124 (204)
|++|+||||++|+||+||+|||++|++|+|++|+||++|+++||+||||++++|+++
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q 61 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred HHHHHHCCCEECCCEEEEEEEECCCEEEEECCCCEEECCCCCEEEEECCCCCCCCCC
T ss_conf 899987599677997999999269879997797388738998099981432055779
No 3
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=1.00 E-value=1 Score=135.40 Aligned_cols=54 Identities=78% Similarity=1.200 Sum_probs=52.0
Q ss_pred HHHHCCCCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCEEEEECCCEECCHH
Q ss_conf 999739920799328999940936899709837860899769995121223210
Q 028762 70 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 123 (204)
Q Consensus 70 ~LkKLGlk~I~gV~rVtIkk~~~~~fvI~~P~V~ks~gs~TYvVfGeak~~d~s 123 (204)
+|+||||++|+||+||+|||++|++|+|++|+||++|+++||+||||++++|++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~ 54 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred CCCCCCCEECCCEEEEEEEECCCEEEEECCCCEEECCCCCEEEEECCEEECCCC
T ss_conf 952019878799799999927988999779748974899839998240506589
No 4
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=73.00 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=46.1
Q ss_pred CCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCEEEEECCCEECCHHHH
Q ss_conf 92079932899994093689970983786089976999512122321058
Q 028762 76 MKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 125 (204)
Q Consensus 76 lk~I~gV~rVtIkk~~~~~fvI~~P~V~ks~gs~TYvVfGeak~~d~s~q 125 (204)
+..|+||.||+|+|.++++|+|++|.|+.++.++||+|+|.++.+++..-
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~el 50 (66)
T 3lkx_A 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEM 50 (66)
T ss_dssp CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGGG
T ss_pred CCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCEEEECCCCEEEEHHHH
T ss_conf 96667704899995299899936831488414473685478887588897
No 5
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=72.94 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=46.0
Q ss_pred CCCCCCCEEEEEEECCCEEEEECCCEEEEECCCCEEEEECCCEECCHHHH
Q ss_conf 92079932899994093689970983786089976999512122321058
Q 028762 76 MKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQ 125 (204)
Q Consensus 76 lk~I~gV~rVtIkk~~~~~fvI~~P~V~ks~gs~TYvVfGeak~~d~s~q 125 (204)
+..|+||+||+|+|.++++|+|++|.|+.|+.++||+|+|.++.++++.-
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e~ 50 (58)
T 3mcb_B 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEM 50 (58)
T ss_dssp CCEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGGG
T ss_pred CCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCEEEEECCCEEEEHHHH
T ss_conf 96567715999995399899946840688404264898668830188897
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=62.81 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 5128788975099989999999981993899885012
Q 028762 167 PKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 167 eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~Lt 203 (204)
+++|++||++||||++.|++||.++|||+..||+.|-
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll 76 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 76 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8999999986298999999999994998999999998
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=1.00 E-value=1 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 89995128788975099989999999981993899885012
Q 028762 163 TGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 163 ~gi~eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~Lt 203 (204)
..|+.++|+.+.++||++...+.+||.++||||..||..|.
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 65799999999999698899999999994999999999999
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=33.46 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 512878897509998999999998199389988501
Q 028762 167 PKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~L 202 (204)
++.|..+|+. |.+|+.|++||+.++||+-.|+--|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999873-9799999999999099999999977
No 9
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 512878897509998999999998199389988
Q 028762 167 PKDIELVMTQAGVPRSRAVKALKAADGDIVSAI 199 (204)
Q Consensus 167 eeDIeLVm~QagvSrekAvkALke~~GDIV~AI 199 (204)
++.|+.++ --|.|+..|++|||.++|+|-.|.
T Consensus 20 ~e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa 51 (63)
T 1wgn_A 20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQIL 51 (63)
T ss_dssp HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHH-HCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999-808889999999998389999999
No 10
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=27.66 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999512878897509998999999998199389988501
Q 028762 164 GVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 164 gi~eeDIeLVm~QagvSrekAvkALke~~GDIV~AIM~L 202 (204)
+++++.|+.+|+ -|.+|+.|++||+.++||+=.|+--|
T Consensus 7 ~~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L 44 (63)
T 1wji_A 7 GVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNVL 44 (63)
T ss_dssp SSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 889999999999-39999999999999598999999999
Done!