BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028763
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BTG6|CL049_MOUSE UPF0454 protein C12orf49 homolog OS=Mus musculus PE=2 SV=1
Length = 205
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 12 GCNLLSQCCNSYEYCVSCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHN 69
GC L + CC +YEYCVSCC+ P++ L E+ LN +A F+ C +CR +
Sbjct: 118 GC-LANGCCEAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTS 176
Query: 70 SESVVHENAY 79
S+SV HEN Y
Sbjct: 177 SQSVQHENTY 186
>sp|Q17QN8|CL049_BOVIN UPF0454 protein C12orf49 homolog OS=Bos taurus PE=2 SV=1
Length = 205
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 12 GCNLLSQCCNSYEYCVSCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHN 69
GC L S CC++YEYCVSCC+ P + L E+ LN +A F+ C +CR +
Sbjct: 118 GC-LSSGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTS 176
Query: 70 SESVVHENAY 79
S+SV HEN Y
Sbjct: 177 SQSVQHENTY 186
>sp|Q6GNT2|CL049_XENLA UPF0454 protein C12orf49 homolog OS=Xenopus laevis PE=2 SV=1
Length = 205
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 19 CCNSYEYCVSCCVNPARTLK-EQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHE 76
CC+ YE+CVSCC+ P + L+ E+ LN +A F+ C +CR +S+SV HE
Sbjct: 124 CCSVYEFCVSCCLQPNKQLQLERFLNKAAVAFQNLFQAVEDHFELCLAKCRTSSQSVQHE 183
Query: 77 NAYLSDF-HHCF 87
N Y + HC+
Sbjct: 184 NTYRNPIAKHCY 195
>sp|Q9H741|CL049_HUMAN UPF0454 protein C12orf49 OS=Homo sapiens GN=C12orf49 PE=2 SV=1
Length = 205
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 19 CCNSYEYCVSCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHE 76
CC++YEYCVSCC+ P + L E+ LN +A F+ C +CR +S+SV HE
Sbjct: 124 CCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHE 183
Query: 77 NAY 79
N Y
Sbjct: 184 NTY 186
>sp|Q5ZJE4|CL049_CHICK UPF0454 protein C12orf49 homolog OS=Gallus gallus GN=RCJMB04_18o22
PE=2 SV=1
Length = 205
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 19 CCNSYEYCVSCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHE 76
CC+ YEYCVSCC+ P++ L E+ LN +A F+ C +CR +S+SV HE
Sbjct: 124 CCSVYEYCVSCCLQPSKQHLLERFLNRAAMAFQNLFMAVEDRFELCLAKCRTSSQSVQHE 183
Query: 77 NAY 79
N Y
Sbjct: 184 NTY 186
>sp|Q503V3|CL049_DANRE UPF0454 protein C12orf49 homolog OS=Danio rerio GN=zgc:110063 PE=2
SV=1
Length = 199
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 19 CCNSYEYCVSCCVNPART-LKEQVLNVKIAKPTTAGTYGSV---FDFCAGRCRHNSESVV 74
CC+ YEYCVSCC+ P + L E+ LN A + +V F+ C +CR +S+SV
Sbjct: 118 CCSIYEYCVSCCLQPDKQPLLERFLNR--AAEGFQNLFTAVEDHFELCLAKCRTSSQSVQ 175
Query: 75 HENAY 79
HEN Y
Sbjct: 176 HENTY 180
>sp|Q09328|MGT5A_HUMAN Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens
GN=MGAT5 PE=1 SV=1
Length = 741
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 105 LSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKYMSCKRGCLASMGADQPA 164
LS + V + G+SC VC+ S C + LN+ + + KY K C Q +
Sbjct: 635 LSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKDKDMLKY---KVTC-------QSS 684
Query: 165 EVADD--APSNLNPTA--CLYTRIQSMLSCDGSHRHTRRLCPC 203
E+A D PS +P C++ + SC G+H +R+CPC
Sbjct: 685 ELAKDILVPS-FDPKNKHCVFQGDLLLFSCAGAHPRHQRVCPC 726
>sp|Q8R4G6|MGT5A_MOUSE Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Mus musculus
GN=Mgat5 PE=2 SV=1
Length = 740
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 105 LSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKYMSCKRGCLASMGADQPA 164
LS + V + G+SC VC+ S C + LN+ + + KY K C Q +
Sbjct: 634 LSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKY---KVTC-------QSS 683
Query: 165 EVADD--APSNLNPTA--CLYTRIQSMLSCDGSHRHTRRLCPC 203
E+ D PS P + C++ + SC G+H +R+CPC
Sbjct: 684 ELYKDILVPS-FYPKSKHCVFQGDLLLFSCAGAHPTHQRICPC 725
>sp|Q08834|MGT5A_RAT Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Rattus
norvegicus GN=Mgat5 PE=1 SV=1
Length = 740
Score = 38.9 bits (89), Expect = 0.021, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 105 LSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKYMSCKRGCLASMGADQPA 164
LS + V + G+SC VC+ S C + LN+ + + KY K C Q +
Sbjct: 634 LSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKEKDLLKY---KVIC-------QSS 683
Query: 165 EVADD--APSNLNPTA--CLYTRIQSMLSCDGSHRHTRRLCPC 203
E+ D PS P + C++ + SC G+H +R+CPC
Sbjct: 684 ELYKDILVPS-FYPKSKHCVFQGDLLLFSCAGAHPTHQRICPC 725
>sp|P97259|MGT5A_CRIGR Alpha-1,6-mannosylglycoprotein
6-beta-N-acetylglucosaminyltransferase A OS=Cricetulus
griseus GN=MGAT5 PE=2 SV=1
Length = 740
Score = 37.0 bits (84), Expect = 0.10, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 105 LSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKY-MSCKRGCLASMGADQP 163
LS + V + G+SC VC+ + C + LN+ + + KY ++C Q
Sbjct: 634 LSALQVKLAEPGQSCKQVCQENQLICEPSFFQHLNKEKDLLKYRVTC-----------QS 682
Query: 164 AEVADD--APSNLNPTA--CLYTRIQSMLSCDGSHRHTRRLCPC 203
+E+ D PS P + C+ + SC G+H +R+CPC
Sbjct: 683 SELYKDILVPS-FYPKSKHCVLQGDLLLFSCAGAHPTHQRICPC 725
>sp|P38478|YMF40_MARPO Uncharacterized mitochondrial protein ymf40 OS=Marchantia
polymorpha GN=YMF40 PE=4 SV=1
Length = 502
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 108 ISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKYMSCKRG 153
I ++IG+ + C G + K I LN EII KYM+ RG
Sbjct: 364 IDILIGKLSQM--GACDEKGTPKAVTKWIFLNVGEIINKYMAVFRG 407
>sp|Q3T4C0|COX2_SMICU Cytochrome c oxidase subunit 2 OS=Smittium culisetae GN=cox2 PE=3
SV=1
Length = 254
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 81 SDFHHCFSMPSNASGAGVTQLEGRLSGISVIIGRQG 116
SD H F++PS G + L GRL+GIS + R+G
Sbjct: 178 SDVIHSFAVPS--LGLKIDALPGRLNGISTYVEREG 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,596,393
Number of Sequences: 539616
Number of extensions: 2836988
Number of successful extensions: 5320
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5304
Number of HSP's gapped (non-prelim): 12
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)