Query 028763
Match_columns 204
No_of_seqs 131 out of 144
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 16:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3136 Uncharacterized conser 100.0 6.4E-37 1.4E-41 253.5 3.2 98 2-99 95-194 (196)
2 PF10218 DUF2054: Uncharacteri 100.0 1.6E-36 3.5E-41 243.5 4.9 86 2-87 43-131 (131)
3 PF15024 Glyco_transf_18: Glyc 100.0 3E-34 6.5E-39 273.1 8.0 118 68-203 441-559 (559)
4 cd02340 ZZ_NBR1_like Zinc fing 12.1 1.3E+02 0.0029 19.5 1.3 22 5-33 12-33 (43)
5 PF00187 Chitin_bind_1: Chitin 12.0 65 0.0014 21.1 -0.3 16 12-28 12-27 (40)
6 PF08120 Toxin_32: Tamulustoxi 11.7 38 0.00083 21.3 -1.4 15 58-72 3-17 (35)
7 cd02249 ZZ Zinc finger, ZZ typ 11.5 1.5E+02 0.0033 19.1 1.3 21 6-33 13-33 (46)
8 cd02335 ZZ_ADA2 Zinc finger, Z 10.6 1.5E+02 0.0032 19.6 1.1 20 5-31 13-32 (49)
9 PF13465 zf-H2C2_2: Zinc-finge 10.2 1.7E+02 0.0036 16.7 1.1 12 4-15 11-22 (26)
10 smart00270 ChtBD1 Chitin bindi 8.8 2.1E+02 0.0045 18.6 1.2 16 12-28 10-25 (38)
No 1
>KOG3136 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.4e-37 Score=253.53 Aligned_cols=98 Identities=58% Similarity=1.072 Sum_probs=92.2
Q ss_pred CCCcceeecCCCCCCCCCcccCccccccccCCCcc-HHHHHHhhhccCCcccccccchhHHHHhhhccCchhhhhhhhcc
Q 028763 2 LPRERREILLGCNLLSQCCNSYEYCVSCCVNPART-LKEQVLNVKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAYL 80 (204)
Q Consensus 2 ~~~~~r~sC~~C~~~~~CC~~YE~CVSCCl~p~~~-~~e~~l~~~~~~~~~~~~~~d~Fe~C~~~CRT~s~sv~heN~Y~ 80 (204)
+|+++||+|+|||..++||++|||||||||+|.|+ +||+||+++.+++.++++++||||||++||||+|+||+|||+|+
T Consensus 95 ~p~~~~ysC~gCn~~s~CC~~YEyCVSCCL~P~kQ~LLErvl~a~va~~~~f~tv~dhFelCl~kCRtnS~SV~HEN~Yr 174 (196)
T KOG3136|consen 95 GPSTKRYSCHGCNILSQCCNSYEYCVSCCLNPSKQTLLERVLKAKVAKPATFGTVKDHFELCLGKCRTNSESVVHENAYR 174 (196)
T ss_pred CCCcceeecCCCccccchhhHHHHHHHHHcCCchhHHHHHHHhcccccchhhhhHHHHHHHHHHHhcCCchhheeccccc
Confidence 68999999999999899999999999999999985 56999999999999999999999999999999999999999999
Q ss_pred cc-cCcccCCCCCCCCCCcc
Q 028763 81 SD-FHHCFSMPSNASGAGVT 99 (204)
Q Consensus 81 ~~-~~~C~~~~~~~~g~~~~ 99 (204)
|+ .|||||.+.|.+|++..
T Consensus 175 dp~akhCyglt~~eS~~~l~ 194 (196)
T KOG3136|consen 175 DPEAKHCYGLTSNESGANLT 194 (196)
T ss_pred ChHHHhhcccccccCccccC
Confidence 97 69999999887787743
No 2
>PF10218 DUF2054: Uncharacterized conserved protein (DUF2054); InterPro: IPR019352 This family of proteins includes those belonging to UPF0454. It is conserved from nematodes to plants and is functionally uncharacterised. It contains 14 conserved cysteines, three of which are CC-dimers.
Probab=100.00 E-value=1.6e-36 Score=243.49 Aligned_cols=86 Identities=44% Similarity=0.936 Sum_probs=81.3
Q ss_pred CCCcceeecCCCCCCCCCcccCccccccccCCCcc-HHHHHH-hhhccCCcccccccchhHHHHhhhccCchhhhhhhhc
Q 028763 2 LPRERREILLGCNLLSQCCNSYEYCVSCCVNPART-LKEQVL-NVKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 79 (204)
Q Consensus 2 ~~~~~r~sC~~C~~~~~CC~~YE~CVSCCl~p~~~-~~e~~l-~~~~~~~~~~~~~~d~Fe~C~~~CRT~s~sv~heN~Y 79 (204)
+|+++||+|++||+.++||++|||||||||+|+|+ +||+|| +++.+++.++++++|+||||++||||+|+||+|||+|
T Consensus 43 ~~~~~r~sC~~Cn~~~~CC~~YE~CVSCCL~P~k~~~le~~l~~~~~~~~~~~~~~~d~FelC~~kCRTsS~SV~HEN~Y 122 (131)
T PF10218_consen 43 APGTKRYSCDGCNLSSGCCSIYEYCVSCCLHPDKQPLLERVLRKAAVARQRLFGSVTDQFELCLAKCRTSSQSVQHENTY 122 (131)
T ss_pred CCCceeEECCCcCCCCCcccchhhhhhhccChhhhhHHHHHHHHhhhcccceehhhccHHHHHHHHhcCCchhceecccc
Confidence 57899999999999999999999999999999975 578898 8889999999999999999999999999999999999
Q ss_pred cc-ccCccc
Q 028763 80 LS-DFHHCF 87 (204)
Q Consensus 80 ~~-~~~~C~ 87 (204)
++ +.||||
T Consensus 123 r~p~~k~Cy 131 (131)
T PF10218_consen 123 RDPDAKHCY 131 (131)
T ss_pred cCcccccCC
Confidence 99 589998
No 3
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=100.00 E-value=3e-34 Score=273.15 Aligned_cols=118 Identities=30% Similarity=0.579 Sum_probs=107.7
Q ss_pred cCchhhhhhhhcccccCcccCCCCCCCCCCcccccccccceEEEeCCCCCcHHHHHHhcCCceecCCCcccccHHHHHhh
Q 028763 68 HNSESVVHENAYLSDFHHCFSMPSNASGAGVTQLEGRLSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQCEIIQKY 147 (204)
Q Consensus 68 T~s~sv~heN~Y~~~~~~C~~~~~~~~g~~~~~~~ppl~~l~vv~~~~GqSC~~~C~~~gl~CepsfF~~iN~c~~l~k~ 147 (204)
|.+|||+|+|+|+++|+||.+.. .|||+++|+||++++||||+++|+++||+|||+||++||++++|+|+
T Consensus 441 T~egmLeRv~~~ie~q~fC~~~~----------~WPPlsaL~vv~~~~GqSC~~~C~~~gliCEPsfFp~IN~~~~l~r~ 510 (559)
T PF15024_consen 441 TCEGMLERVNALIEKQDFCDKSV----------RWPPLSALQVVLGEPGQSCKDACQSKGLICEPSFFPFINRCDELQRL 510 (559)
T ss_pred CHHHHHHHHHHHHHhhhhccccC----------CCCChhheEEEEcCCCCCHHHHHHhhCcEEcHhhhhhhccHHHHHhh
Confidence 89999999999999999999985 48999999999999999999999999999999999999999999997
Q ss_pred -CCccccccccCCCCCCcccccCCCCCCCCCceeecCCCCccccCCCCCCCceeccC
Q 028763 148 -MSCKRGCLASMGADQPAEVADDAPSNLNPTACLYTRIQSMLSCDGSHRHTRRLCPC 203 (204)
Q Consensus 148 -~~C~~~c~~~~g~~~Pa~v~~~ap~~~~~~~C~lq~~~llFSCags~~~~rRLCPC 203 (204)
++|++. +...++.+|++ +.++++|++|++++||||+|+++++||||||
T Consensus 511 ~~~C~~~-e~~~~~~aP~f-------~~~~~~C~lQ~~~lLFSCags~~~~rRLCPC 559 (559)
T PF15024_consen 511 GVNCDST-ESEMSHLAPAF-------SPNPGHCVLQSDPLLFSCAGSHPSYRRLCPC 559 (559)
T ss_pred CCCCCcc-cccCcccCCCC-------CCCCCeeeeCCCCceeecCCCCCCCCccCCC
Confidence 689963 44445666665 3567899999999999999999999999999
No 4
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=12.10 E-value=1.3e+02 Score=19.47 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=16.7
Q ss_pred cceeecCCCCCCCCCcccCccccccccCC
Q 028763 5 ERREILLGCNLLSQCCNSYEYCVSCCVNP 33 (204)
Q Consensus 5 ~~r~sC~~C~~~~~CC~~YE~CVSCCl~p 33 (204)
..||.|..|. .|..|.+|=..+
T Consensus 12 G~ry~C~~C~-------d~dLC~~C~~~~ 33 (43)
T cd02340 12 GVRYKCLVCP-------DYDLCESCEAKG 33 (43)
T ss_pred CCeEECCCCC-------CccchHHhhCcC
Confidence 4689999884 588888886554
No 5
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e.g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
Probab=11.99 E-value=65 Score=21.10 Aligned_cols=16 Identities=38% Similarity=1.121 Sum_probs=11.3
Q ss_pred CCCCCCCCcccCccccc
Q 028763 12 GCNLLSQCCNSYEYCVS 28 (204)
Q Consensus 12 ~C~~~~~CC~~YE~CVS 28 (204)
.|.. +.|||.|-||-.
T Consensus 12 ~Cp~-~~CCS~~G~CG~ 27 (40)
T PF00187_consen 12 TCPN-GLCCSQYGYCGT 27 (40)
T ss_dssp BSGG-G-EEETTSBEES
T ss_pred cCCC-CCccCCCCcccC
Confidence 4643 789999999854
No 6
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=11.73 E-value=38 Score=21.34 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=11.2
Q ss_pred hhHHHHhhhccCchh
Q 028763 58 VFDFCAGRCRHNSES 72 (204)
Q Consensus 58 ~Fe~C~~~CRT~s~s 72 (204)
||-.|...||-+|--
T Consensus 3 hfvicttdcrrnspg 17 (35)
T PF08120_consen 3 HFVICTTDCRRNSPG 17 (35)
T ss_pred eEEEeccccccCCCC
Confidence 677888888877643
No 7
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=11.48 E-value=1.5e+02 Score=19.13 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=15.3
Q ss_pred ceeecCCCCCCCCCcccCccccccccCC
Q 028763 6 RREILLGCNLLSQCCNSYEYCVSCCVNP 33 (204)
Q Consensus 6 ~r~sC~~C~~~~~CC~~YE~CVSCCl~p 33 (204)
.||.|..|. .|..|.+|=..+
T Consensus 13 ~r~~C~~C~-------d~dLC~~Cf~~~ 33 (46)
T cd02249 13 VRYHCLVCE-------DFDLCSSCYAKG 33 (46)
T ss_pred CEEECCCCC-------CCcCHHHHHCcC
Confidence 788888884 588888775444
No 8
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=10.62 E-value=1.5e+02 Score=19.55 Aligned_cols=20 Identities=20% Similarity=0.600 Sum_probs=12.9
Q ss_pred cceeecCCCCCCCCCcccCcccccccc
Q 028763 5 ERREILLGCNLLSQCCNSYEYCVSCCV 31 (204)
Q Consensus 5 ~~r~sC~~C~~~~~CC~~YE~CVSCCl 31 (204)
..||.|..|. .|..|.+|=.
T Consensus 13 g~r~~C~~C~-------d~dLC~~Cf~ 32 (49)
T cd02335 13 TIRIKCAECP-------DFDLCLECFS 32 (49)
T ss_pred CcEEECCCCC-------CcchhHHhhh
Confidence 3677777773 3777777643
No 9
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=10.15 E-value=1.7e+02 Score=16.69 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=9.7
Q ss_pred CcceeecCCCCC
Q 028763 4 RERREILLGCNL 15 (204)
Q Consensus 4 ~~~r~sC~~C~~ 15 (204)
+.++|.|+-|+.
T Consensus 11 ~~k~~~C~~C~k 22 (26)
T PF13465_consen 11 GEKPYKCPYCGK 22 (26)
T ss_dssp SSSSEEESSSSE
T ss_pred CCCCCCCCCCcC
Confidence 568899999964
No 10
>smart00270 ChtBD1 Chitin binding domain.
Probab=8.78 E-value=2.1e+02 Score=18.55 Aligned_cols=16 Identities=38% Similarity=1.045 Sum_probs=11.8
Q ss_pred CCCCCCCCcccCccccc
Q 028763 12 GCNLLSQCCNSYEYCVS 28 (204)
Q Consensus 12 ~C~~~~~CC~~YE~CVS 28 (204)
.|.. ..||+.|.||-.
T Consensus 10 ~C~~-~~CCS~~G~CG~ 25 (38)
T smart00270 10 VCPN-NLCCSQFGYCGS 25 (38)
T ss_pred cCCC-CCccCCCcCccC
Confidence 5643 689999988843
Done!