Query 028763
Match_columns 204
No_of_seqs 142 out of 144
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 18:12:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028763.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2257-2261//hhsearch_pdb/028763hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ojh_A NBLA; degradation prote 1.0 1 1 12.7 -0.6 25 67-91 36-60 (65)
2 1wkx_A Hevein isoform 2; aller 1.0 1 1 12.2 1.1 17 11-28 10-26 (43)
3 1fu9_A U-shaped transcriptiona 1.0 1 1 11.8 -1.4 24 65-88 10-34 (36)
4 2e5r_A Dystrobrevin alpha; ZZ 1.0 1 1 11.6 -0.3 25 8-32 12-44 (63)
5 2kus_A SM-AMP-1.1A; plant anti 1.0 1 1 11.3 1.1 16 12-28 13-28 (35)
6 1mmc_A AC-AMP2, antimicrobial 1.0 1 1 11.3 1.2 17 11-28 7-23 (30)
7 2lb7_A WAMP-1A, antimicrobial 1.0 1 1 11.2 0.8 14 12-26 12-25 (44)
8 2kn0_A FN14; tweak, TNF recept 1.0 1 1 11.0 2.2 25 84-108 31-55 (66)
9 2hgo_A CASSIICOLIN; toxin, dis 1.0 1 1 10.7 0.3 6 24-29 1-6 (27)
10 1rl0_A RRNA N-, antiviral prot 1.0 1 1 10.6 -3.3 12 127-138 173-184 (255)
No 1
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=1.00 E-value=1 Score=12.73 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0672023453320355675347898
Q 028763 67 RHNSESVVHENAYLSDFHHCFSMPS 91 (204)
Q Consensus 67 RT~s~sv~heN~Y~~~~~~C~~~~~ 91 (204)
-+...|..++|.|++=.|+-.|..+
T Consensus 36 e~~rQmMikeN~~k~liK~~w~l~~ 60 (65)
T 1ojh_A 36 KLYEQMVVREATYQELLKHQWGLDS 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999899999999986437899
No 2
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A*
Probab=1.00 E-value=1 Score=12.25 Aligned_cols=17 Identities=29% Similarity=0.809 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 799988997435853101
Q 028763 11 LGCNLLSQCCNSYEYCVS 28 (204)
Q Consensus 11 ~~C~~~~~CC~~YE~CVS 28 (204)
.+|. .+.||+.|-||=+
T Consensus 10 ~~Cp-~~~CCS~~G~CGt 26 (43)
T 1wkx_A 10 KLCP-DNLCCSQWGWCGS 26 (43)
T ss_dssp BCCS-TTCEECTTSCEES
T ss_pred CCCC-CCCCCCCCCCCCC
T ss_conf 7579-9882286685279
No 3
>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A
Probab=1.00 E-value=1 Score=11.78 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHCCCCHHHHHHHHCCCCCC-CCCC
Q ss_conf 43067202345332035567-5347
Q 028763 65 RCRHNSESVVHENAYLSDFH-HCFS 88 (204)
Q Consensus 65 ~CRT~s~sv~heN~Y~~~~~-~C~~ 88 (204)
.|+++.-+....++|+.+.+ +|-.
T Consensus 10 ~C~~C~IsF~~l~ty~aHKk~YC~s 34 (36)
T 1fu9_A 10 YCSTCDISFNYVKTYLAHKQFYCKN 34 (36)
T ss_dssp EETTTTEECSSHHHHHHHHHHTSCC
T ss_pred EECCCCCEEHHHHHHHHHHEECCCC
T ss_conf 6033656410057776543235788
No 4
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=11.64 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=12.6
Q ss_pred EECCCCCCC------CC--CCCCCCCCCCCCCC
Q ss_conf 534799988------99--74358531013567
Q 028763 8 EILLGCNLL------SQ--CCNSYEYCVSCCVN 32 (204)
Q Consensus 8 ~sC~~C~~~------~~--CC~~YE~CVSCCl~ 32 (204)
..|++|+.. .. =|..|..|..|=..
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CCCCCCCCCCEECCEEEECCCCCCHHHHHHHHC
T ss_conf 899299886263523883679984147888868
No 5
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media}
Probab=1.00 E-value=1 Score=11.30 Aligned_cols=16 Identities=50% Similarity=1.292 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 99988997435853101
Q 028763 12 GCNLLSQCCNSYEYCVS 28 (204)
Q Consensus 12 ~C~~~~~CC~~YE~CVS 28 (204)
+|. .+.||+.|-||=+
T Consensus 13 ~C~-~g~CCS~~G~CG~ 28 (35)
T 2kus_A 13 GCR-GGLCCSQYGYCGS 28 (35)
T ss_dssp CCC-TTCEECTTSBEEC
T ss_pred CCC-CCCCCCCCCCCCC
T ss_conf 069-9881088866559
No 6
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A*
Probab=1.00 E-value=1 Score=11.27 Aligned_cols=17 Identities=29% Similarity=0.921 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 799988997435853101
Q 028763 11 LGCNLLSQCCNSYEYCVS 28 (204)
Q Consensus 11 ~~C~~~~~CC~~YE~CVS 28 (204)
..|. .+.||+.|-||=+
T Consensus 7 ~~Cp-~~~CCS~~G~CGt 23 (30)
T 1mmc_A 7 GRCP-SGMCCSQFGYCGK 23 (30)
T ss_dssp SCCS-TTCEECTTSCEES
T ss_pred CCCC-CCCCCCCCCCCCC
T ss_conf 8688-9878887786069
No 7
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae}
Probab=1.00 E-value=1 Score=11.25 Aligned_cols=14 Identities=36% Similarity=1.205 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 999889974358531
Q 028763 12 GCNLLSQCCNSYEYC 26 (204)
Q Consensus 12 ~C~~~~~CC~~YE~C 26 (204)
+| ....||+.|-||
T Consensus 12 ~C-~~g~CCS~~G~C 25 (44)
T 2lb7_A 12 KC-PNCLCCGKYGFC 25 (44)
T ss_dssp CC-CTTCEEETTTEE
T ss_pred CC-CCCCCCCCCCCC
T ss_conf 47-998806877734
No 8
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=1.00 E-value=1 Score=10.97 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 7534789899999866665665562
Q 028763 84 HHCFSMPSNASGAGVTQLEGRLSGI 108 (204)
Q Consensus 84 ~~C~~~~~~~~g~~~~~~~ppl~~l 108 (204)
+||.+-.....-+.+|..||.+.++
T Consensus 31 dfC~~cps~t~p~~fpllWp~l~~~ 55 (66)
T 2kn0_A 31 DFCQNCPSKTEQPDFPWIWVEQKLI 55 (66)
T ss_dssp TTTTTCCCCSCSCCCCSSCC-----
T ss_pred CCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 4014788887899865303543464
No 9
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=1.00 E-value=1 Score=10.66 Aligned_cols=6 Identities=83% Similarity=1.680 Sum_probs=0.0
Q ss_pred CCCCCC
Q ss_conf 531013
Q 028763 24 EYCVSC 29 (204)
Q Consensus 24 E~CVSC 29 (204)
|.||||
T Consensus 1 ~~cvsc 6 (27)
T 2hgo_A 1 ETCVSC 6 (27)
T ss_dssp CCCCSC
T ss_pred CCCEEE
T ss_conf 963576
No 10
>1rl0_A RRNA N-, antiviral protein DAP-30; mixed beta-sheet, alpha and beta regions, hydrolase, plant protein; 1.40A {Dianthus caryophyllus} SCOP: d.165.1.1 PDB: 1lp8_A 1lpc_A* 1lpd_A* 1qi7_A
Probab=1.00 E-value=1 Score=10.63 Aligned_cols=12 Identities=0% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCCEECCCCCCC
Q ss_conf 991206778543
Q 028763 127 GQSCVLNKLILL 138 (204)
Q Consensus 127 gl~CepsfF~~L 138 (204)
+|+||++-|++|
T Consensus 173 qMvsEAARF~yI 184 (255)
T 1rl0_A 173 QMTAEAARFRYI 184 (255)
T ss_dssp HHHHHHHHBHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 998867770999
Done!