Query 028765
Match_columns 204
No_of_seqs 119 out of 125
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 18:23:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028765.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2257-2261//hhsearch_pdb/028765hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 1.0 1 1 253.8 9.7 119 86-204 1-177 (177)
2 2lnj_A SLL1418 protein, putati 1.0 1 1 187.5 0.0 109 89-203 9-169 (170)
3 2xb3_A PSBP protein; photosynt 1.0 1 1 185.5 8.7 111 89-203 3-164 (165)
4 1tu1_A Hypothetical protein PA 1.0 1 1 31.6 7.3 105 94-204 3-142 (148)
5 3lyd_A Uncharacterized protein 1.0 1 1 18.9 6.9 59 141-203 94-157 (161)
6 1e0n_A Hypothetical protein; Y 1.0 1 1 17.4 1.2 21 168-188 6-26 (27)
7 2ysi_A Transcription elongatio 1.0 1 1 17.3 1.8 25 165-189 13-37 (40)
8 1ywi_A Formin-binding protein 1.0 1 1 16.7 2.6 26 164-189 14-39 (41)
9 2dk1_A WW domain-binding prote 1.0 1 1 16.7 0.7 26 167-193 12-37 (50)
10 1e0l_A Formin binding protein; 1.0 1 1 16.5 1.5 23 167-189 11-33 (37)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=1.00 E-value=1 Score=253.80 Aligned_cols=119 Identities=76% Similarity=1.292 Sum_probs=110.3
Q ss_pred CCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCC-------------------------------
Q ss_conf 9877789841222798189634898545433479804773045334431-------------------------------
Q 028765 86 GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNTN------------------------------- 134 (204)
Q Consensus 86 g~~k~~~gf~~y~~dGY~flyPsgW~~vke~~~pg~v~ry~D~id~~eN------------------------------- 134 (204)
|+||.++||++|.+|||+|+||++|+++++.++||++.+|+|+++..+|
T Consensus 1 ~~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~ 80 (177)
T 1v2b_A 1 GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLG 80 (177)
T ss_dssp ------CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred CCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 99888999657856988998589982511004798259996776777647999957998886677898999888899988
Q ss_pred -----------------------CCCCCC----CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCC
Q ss_conf -----------------------000147----99549999998618999996124899998599699998312874442
Q 028765 135 -----------------------ILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWF 187 (204)
Q Consensus 135 -----------------------ll~a~~----Gk~YY~lE~~~r~adgde~~RH~L~tvtV~~GkLYtl~~~a~ekRW~ 187 (204)
||++++ |++||.|||.+++++|+|++||+|++++|++||||||++|++|+||+
T Consensus 81 ~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~ 160 (177)
T 1v2b_A 81 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWF 160 (177)
T ss_dssp -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCS
T ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEEEECCHHHHH
T ss_conf 87633433455775667542138988677870995799999997548887522289999999899999999706878852
Q ss_pred CHHHHHHHHHCCEEEEC
Q ss_conf 20245363222401429
Q 028765 188 KGTRKYVESTASSFSVA 204 (204)
Q Consensus 188 K~~~k~l~~vv~SFsVa 204 (204)
|++++.|+.+++||+||
T Consensus 161 k~~~~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 161 KGAKKFVENTATSFSLA 177 (177)
T ss_dssp TTTTHHHHHHHHTCEEC
T ss_pred HHHHHHHHHHHHHEECC
T ss_conf 55789999998616519
No 2
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=1.00 E-value=1 Score=187.54 Aligned_cols=109 Identities=24% Similarity=0.441 Sum_probs=97.2
Q ss_pred CCCCCCEEEC--CCCEEEECCCCCCCCCCCCCC----CCEEEECCCCCCCCC----------------------------
Q ss_conf 7789841222--798189634898545433479----804773045334431----------------------------
Q 028765 89 KTNTDFLPYN--GDGFKLSIPSKWNPSKEREFP----GQVLRYEDNFDSNTN---------------------------- 134 (204)
Q Consensus 89 k~~~gf~~y~--~dGY~flyPsgW~~vke~~~p----g~v~ry~D~id~~eN---------------------------- 134 (204)
..+.||++|+ .|||+|+||+||+++ +++ |++.+|+|.++..+|
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~---~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~ 85 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGV---DVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFM 85 (170)
Q ss_pred --------------CCCCCC----CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf --------------000147----99549999998618999996124899998599699998312874442202453632
Q 028765 135 --------------ILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVES 196 (204)
Q Consensus 135 --------------ll~a~~----Gk~YY~lE~~~r~adgde~~RH~L~tvtV~~GkLYtl~~~a~ekRW~K~~~k~l~~ 196 (204)
||++.+ |++||.|||.++.+++ +.||+|++++|.+||||+|+++++|+||.|. ++.|+.
T Consensus 86 ~~~~~~~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~--~~rh~l~~~~v~~gklY~l~~~ape~~w~~~-~~~l~~ 162 (170)
T 2lnj_A 86 KTVNDASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDN--VERHDLASVTTNRGKLITFDLSTAEDRWDTV-KSLFDT 162 (170)
Q ss_pred HCCEEEE
Q ss_conf 2240142
Q 028765 197 TASSFSV 203 (204)
Q Consensus 197 vv~SFsV 203 (204)
+++||+|
T Consensus 163 v~~SF~v 169 (170)
T 2lnj_A 163 VASSFHV 169 (170)
No 3
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=1.00 E-value=1 Score=185.46 Aligned_cols=111 Identities=23% Similarity=0.433 Sum_probs=97.8
Q ss_pred CCCCCCEEEC--CCCEEEECCCCCCCCCCCCCC-CCEEEECCCCCCCCC-------------------------------
Q ss_conf 7789841222--798189634898545433479-804773045334431-------------------------------
Q 028765 89 KTNTDFLPYN--GDGFKLSIPSKWNPSKEREFP-GQVLRYEDNFDSNTN------------------------------- 134 (204)
Q Consensus 89 k~~~gf~~y~--~dGY~flyPsgW~~vke~~~p-g~v~ry~D~id~~eN------------------------------- 134 (204)
..++||++|. .+||+|+||.||++ ..++ |++.+|+|.++..+|
T Consensus 3 ~~~~g~~~~~D~~~gysf~~P~~W~~---~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~ 79 (165)
T 2xb3_A 3 SATSGLQAYVDSYDGYEFLYPRGWVQ---VQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNI 79 (165)
T ss_dssp ---CCEEEEEETTTTEEEEEETTEEE---ECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHT
T ss_pred CCCCCCEEEECCCCCEEEECCCCCEE---ECCCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 87778648982899879986899868---537897059997864577469999946998889578589999999998874
Q ss_pred -----------CCCCCC----CCCEEEEEEEEECCCC--CCCCCEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf -----------000147----9954999999861899--99961248999985996999983128744422024536322
Q 028765 135 -----------ILEASV----RPPYYFLSVLTRTADG--DEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVEST 197 (204)
Q Consensus 135 -----------ll~a~~----Gk~YY~lE~~~r~adg--de~~RH~L~tvtV~~GkLYtl~~~a~ekRW~K~~~k~l~~v 197 (204)
||++.+ |++||.|||.++++++ +|+.||+|++++|.+||||+|++|++|+||.|+ ++.|+.+
T Consensus 80 ~~~~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~~-~~~l~~v 158 (165)
T 2xb3_A 80 IAPSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKV-EDQFKTI 158 (165)
T ss_dssp TSCTTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHHH-HHHHHHH
T ss_pred HCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCEEEEEEEECCHHHHHHH-HHHHHHH
T ss_conf 057887864389981226549945999999973588766765549999999989999999985288886777-8999988
Q ss_pred CCEEEE
Q ss_conf 240142
Q 028765 198 ASSFSV 203 (204)
Q Consensus 198 v~SFsV 203 (204)
++||+|
T Consensus 159 ~~SF~v 164 (165)
T 2xb3_A 159 VSSFTV 164 (165)
T ss_dssp HHTCEE
T ss_pred HHHEEE
T ss_conf 861895
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=1.00 E-value=1 Score=31.63 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=72.1
Q ss_pred CEEECCCCEEEECCCCCCCCC--CCCCCC---------CEEEECCCCCCCCC--------------------CCCCCC--
Q ss_conf 412227981896348985454--334798---------04773045334431--------------------000147--
Q 028765 94 FLPYNGDGFKLSIPSKWNPSK--EREFPG---------QVLRYEDNFDSNTN--------------------ILEASV-- 140 (204)
Q Consensus 94 f~~y~~dGY~flyPsgW~~vk--e~~~pg---------~v~ry~D~id~~eN--------------------ll~a~~-- 140 (204)
...|.-.+++|..|-||.... +.-.++ +|.| |.....+. ++....
T Consensus 3 m~~y~~~Egsl~lP~gw~D~t~nv~~~~~~~~~g~~~lvIsR--~~~~~~~~l~~~~~~q~~~l~~~l~~y~~~~~~~~~ 80 (148)
T 1tu1_A 3 MTLYRLHEADLEIPDAWQDQSINIFKLPASGPAREASFVISR--DASQGDAPFADYVARQLENAEKQLPGFKLHKRWDIN 80 (148)
T ss_dssp EEEEECSSEEEEEETTSEECCBEEEEECCBTTBCCEEEEEEE--ECCCTTSCHHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred CCEEEECCEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEE--CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 766898979992799808336999986888777744899994--218999998999999999998658171896038677
Q ss_pred --CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHCCEEEEC
Q ss_conf --9954999999861899999612489999859969999831287444220245363222401429
Q 028765 141 --RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 204 (204)
Q Consensus 141 --Gk~YY~lE~~~r~adgde~~RH~L~tvtV~~GkLYtl~~~a~ekRW~K~~~k~l~~vv~SFsVa 204 (204)
|.+--.+||.=+ .+ ++.+||.-.+.+..+++|+|+.++...-|..- +..+..+.+||...
T Consensus 81 l~g~~a~~~e~~~~-~~--g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~-~~~~~~i~~Sf~~~ 142 (148)
T 1tu1_A 81 IHGHAAVLLDYQWQ-RE--GRDLMLRQVFIERRPAVLITTLTTTPADLPHH-EPAWKQAMQTLVPR 142 (148)
T ss_dssp ETTEEEEEEEEEEE-ET--TEEEEEEEEEECCSSSEEEEEEEECGGGHHHH-HHHHHHHHHTCEEC
T ss_pred ECCCCEEEEEEEEC-CC--CEEEEEEEEEEEECCEEEEEEEECCCCCCHHH-HHHHHHHHHHCCCC
T ss_conf 76986799999991-39--99999999999988929999977589999899-99999999745548
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=1.00 E-value=1 Score=18.89 Aligned_cols=59 Identities=10% Similarity=0.000 Sum_probs=44.6
Q ss_pred CCCEEEEEEEEECCCCCCCCCE---EEEEEEEECCEEEEE--ECCCCCCCCCCHHHHHHHHHCCEEEE
Q ss_conf 9954999999861899999612---489999859969999--83128744422024536322240142
Q 028765 141 RPPYYFLSVLTRTADGDEGGKH---QLITATVKGGKLYIC--KAQAGDKRWFKGTRKYVESTASSFSV 203 (204)
Q Consensus 141 Gk~YY~lE~~~r~adgde~~RH---~L~tvtV~~GkLYtl--~~~a~ekRW~K~~~k~l~~vv~SFsV 203 (204)
|.+-|.+||.=..+. .+.+ .+.++.-.+|..|++ ++++.+.+=.-. .+.++.+++|++|
T Consensus 94 G~pa~~iey~y~~~~---~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~-~~d~q~iv~sl~v 157 (161)
T 3lyd_A 94 GFPAYHIEYAYRHHG---TITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADY-WDTFRLMHADLTV 157 (161)
T ss_dssp TEEEEEEEEEEEETT---TEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHH-HHHHHHHHHTCEE
T ss_pred CCCCEEEEEEEECCC---CCEEEEEEEEEEEECCCEEEEEEEEEEECCCCCHHH-HHHHHHHHHEEEE
T ss_conf 863179998984699---843765789999966998999999998656412578-8999998504584
No 6
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=1.00 E-value=1 Score=17.39 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.0
Q ss_pred EEECCEEEEEECCCCCCCCCC
Q ss_conf 985996999983128744422
Q 028765 168 TVKGGKLYICKAQAGDKRWFK 188 (204)
Q Consensus 168 tV~~GkLYtl~~~a~ekRW~K 188 (204)
.-+.|+.|=+++.+++.+|.+
T Consensus 6 ~~~~g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 6 IHENGRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp EESSSSEEEEETTTTEEESSC
T ss_pred ECCCCCEEEEECCCCCEECCC
T ss_conf 888898688979999896359
No 7
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=1.00 E-value=1 Score=17.25 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEEECCEEEEEECCCCCCCCCCH
Q ss_conf 9999859969999831287444220
Q 028765 165 ITATVKGGKLYICKAQAGDKRWFKG 189 (204)
Q Consensus 165 ~tvtV~~GkLYtl~~~a~ekRW~K~ 189 (204)
......+|+.|-+++.++|.+|.|=
T Consensus 13 ~e~~~~~G~~YYyN~~T~eS~We~P 37 (40)
T 2ysi_A 13 VENKTPDGKVYYYNARTRESAWTKP 37 (40)
T ss_dssp EEEECTTSCEEEEETTTCCEESSCC
T ss_pred EEEECCCCCEEEEECCCCCEEECCC
T ss_conf 8978799998988899999794798
No 8
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=1.00 E-value=1 Score=16.71 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEEEEEECCEEEEEECCCCCCCCCCH
Q ss_conf 89999859969999831287444220
Q 028765 164 LITATVKGGKLYICKAQAGDKRWFKG 189 (204)
Q Consensus 164 L~tvtV~~GkLYtl~~~a~ekRW~K~ 189 (204)
-......+|+.|-+++.+++.+|.|=
T Consensus 14 W~e~~~~~G~~YYyN~~T~eS~We~P 39 (41)
T 1ywi_A 14 WTEHKSPDGRTYYYNTETKQSTWEKP 39 (41)
T ss_dssp EEEEEETTTEEEEEETTTTEEEESCC
T ss_pred CEEEECCCCCEEEEECCCCCEEECCC
T ss_conf 48988899998988899899884798
No 9
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=1.00 E-value=1 Score=16.68 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEECCEEEEEECCCCCCCCCCHHHHH
Q ss_conf 998599699998312874442202453
Q 028765 167 ATVKGGKLYICKAQAGDKRWFKGTRKY 193 (204)
Q Consensus 167 vtV~~GkLYtl~~~a~ekRW~K~~~k~ 193 (204)
....+|+.|-+++.++|.+|.|= ..+
T Consensus 12 ~~s~~G~~YYyN~~T~eS~WekP-~~~ 37 (50)
T 2dk1_A 12 GITSEGYHYYYDLISGASQWEKP-EGF 37 (50)
T ss_dssp CCCSTTCCCEEESSSCCEESSCC-TTC
T ss_pred EECCCCCEEEEECCCCCEEEECC-HHH
T ss_conf 98899988989899999886487-666
No 10
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=1.00 E-value=1 Score=16.50 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.1
Q ss_pred EEEECCEEEEEECCCCCCCCCCH
Q ss_conf 99859969999831287444220
Q 028765 167 ATVKGGKLYICKAQAGDKRWFKG 189 (204)
Q Consensus 167 vtV~~GkLYtl~~~a~ekRW~K~ 189 (204)
....+|+.|-+++.+++.+|.|=
T Consensus 11 ~~~~~G~~YYyN~~T~es~We~P 33 (37)
T 1e0l_A 11 YKTADGKTYYYNNRTLESTWEKP 33 (37)
T ss_dssp EECTTSCEEEEETTTTEEESSCC
T ss_pred EECCCCCEEEEECCCCCEEECCC
T ss_conf 89899998988899899884388
Done!