Query 028765
Match_columns 204
No_of_seqs 119 out of 125
Neff 3.6
Searched_HMMs 13730
Date Tue Mar 26 18:24:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028765.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2257-2261//hhsearch_scop/028765hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v2ba_ d.107.1.2 (A:) Oxygen- 100.0 1.7E-34 1.2E-38 226.6 9.7 113 92-204 1-171 (171)
2 d1tu1a_ d.107.1.3 (A:) Hypothe 96.8 0.0022 1.6E-07 37.9 7.0 101 94-203 3-141 (144)
3 d1ywia1 b.72.1.1 (A:15-42) Hun 26.6 17 0.0012 14.4 2.1 22 167-188 6-27 (28)
4 d1o6wa1 b.72.1.1 (A:1-29) Spli 25.1 14 0.001 14.8 1.5 21 168-188 8-28 (29)
5 d2rm0w1 b.72.1.1 (W:1-37) Form 16.2 28 0.0021 13.0 1.5 22 168-189 12-33 (37)
6 d2dk1a1 b.72.1.1 (A:7-44) WW d 14.4 23 0.0017 13.5 0.7 21 169-189 8-28 (38)
7 d1tl2a_ b.67.1.1 (A:) Tachylec 11.0 38 0.0027 12.2 0.9 11 102-112 91-101 (235)
8 d1flga_ b.70.1.1 (A:) Ethanol 9.5 46 0.0033 11.7 4.2 25 162-186 336-360 (582)
9 d1o6wa2 b.72.1.1 (A:30-75) Spl 8.5 50 0.0036 11.5 1.5 23 167-189 19-41 (46)
10 d2ad6a1 b.70.1.1 (A:1-571) Met 6.3 64 0.0047 10.8 2.4 20 168-187 481-500 (571)
No 1
>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=100.00 E-value=1.7e-34 Score=226.59 Aligned_cols=113 Identities=75% Similarity=1.286 Sum_probs=106.0
Q ss_pred CCCEEECCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCC-------------------------------------
Q ss_conf 9841222798189634898545433479804773045334431-------------------------------------
Q 028765 92 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNTN------------------------------------- 134 (204)
Q Consensus 92 ~gf~~y~~dGY~flyPsgW~~vke~~~pg~v~ry~D~id~~eN------------------------------------- 134 (204)
++|+||++|||+|+||+||+++++.+++|++.+|+|.+|..+|
T Consensus 1 ~~~~~y~~dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~~ 80 (171)
T d1v2ba_ 1 TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSG 80 (171)
T ss_dssp CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-------
T ss_pred CCCCCCCCCCEEEECCCCCCEECCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 97531427987997888985603458998148986655577559999965887665340586788888788876645302
Q ss_pred -----------------CCCCCC----CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCHHHHH
Q ss_conf -----------------000147----99549999998618999996124899998599699998312874442202453
Q 028765 135 -----------------ILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKY 193 (204)
Q Consensus 135 -----------------ll~a~~----Gk~YY~lE~~~r~adgde~~RH~L~tvtV~~GkLYtl~~~a~ekRW~K~~~k~ 193 (204)
|+++.+ |++||.|||.++++++++++||+|++++|.+||||||++|++|+||+|+++++
T Consensus 81 ~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~pe~~w~~~~~~~ 160 (171)
T d1v2ba_ 81 KTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKF 160 (171)
T ss_dssp -----------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEEEECCHHHHHHHHHHH
T ss_conf 23355555566643059998353650997899999998517887766589999999599899999726878854556899
Q ss_pred HHHHCCEEEEC
Q ss_conf 63222401429
Q 028765 194 VESTASSFSVA 204 (204)
Q Consensus 194 l~~vv~SFsVa 204 (204)
|+.+++||+|+
T Consensus 161 l~~~v~SF~v~ 171 (171)
T d1v2ba_ 161 VENTATSFSLA 171 (171)
T ss_dssp HHHHHHTCEEC
T ss_pred HHHHHHCEEEC
T ss_conf 99998616729
No 2
>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=96.79 E-value=0.0022 Score=37.93 Aligned_cols=101 Identities=8% Similarity=0.037 Sum_probs=72.2
Q ss_pred CEEECCCCEEEECCCCCCCCCCCCCCCCEEEEC--------------CCCCCCCC--------------------CCCCC
Q ss_conf 412227981896348985454334798047730--------------45334431--------------------00014
Q 028765 94 FLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYE--------------DNFDSNTN--------------------ILEAS 139 (204)
Q Consensus 94 f~~y~~dGY~flyPsgW~~vke~~~pg~v~ry~--------------D~id~~eN--------------------ll~a~ 139 (204)
...|.-..=+|.+|.||.. .. -.++++- |..+..+. +++.+
T Consensus 3 ~~~Y~~~Egs~~lP~gw~d---~t--~ni~~~~~~~~~~~~~lvIsr~~l~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~ 77 (144)
T d1tu1a_ 3 MTLYRLHEADLEIPDAWQD---QS--INIFKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQLPGFKLHKRW 77 (144)
T ss_dssp EEEEECSSEEEEEETTSEE---CC--BEEEEECCBTTBCCEEEEEEEECCCTTSCHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCEEEECCEEEECCCCCEE---CC--CEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 7626886789968998600---76--409985688877641899996138999899999999999998558783998107
Q ss_pred C----CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHCCEEEE
Q ss_conf 7----995499999986189999961248999985996999983128744422024536322240142
Q 028765 140 V----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 203 (204)
Q Consensus 140 ~----Gk~YY~lE~~~r~adgde~~RH~L~tvtV~~GkLYtl~~~a~ekRW~K~~~k~l~~vv~SFsV 203 (204)
+ |.+-+.+||.-+... +..||...+.+.++++|+|+.++....|..- +..++.+++||..
T Consensus 78 ~~~l~g~pa~~~~~t~~~~~---~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~-~~~~~~il~Sf~p 141 (144)
T d1tu1a_ 78 DINIHGHAAVLLDYQWQREG---RDLMLRQVFIERRPAVLITTLTTTPADLPHH-EPAWKQAMQTLVP 141 (144)
T ss_dssp EEEETTEEEEEEEEEEEETT---EEEEEEEEEECCSSSEEEEEEEECGGGHHHH-HHHHHHHHHTCEE
T ss_pred ECCCCCCCEEEEEEEEEECC---EEEEEEEEEEEECCCEEEEEEECCCCCCHHH-HHHHHHHHHHCCC
T ss_conf 50158976899999995299---8699999999958989999994278678889-9999999985812
No 3
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.61 E-value=17 Score=14.40 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.8
Q ss_pred EEEECCEEEEEECCCCCCCCCC
Q ss_conf 9985996999983128744422
Q 028765 167 ATVKGGKLYICKAQAGDKRWFK 188 (204)
Q Consensus 167 vtV~~GkLYtl~~~a~ekRW~K 188 (204)
..-.+|+.|=.+..++|.+|.|
T Consensus 6 ~~~~~G~~YYyN~~T~eS~We~ 27 (28)
T d1ywia1 6 HKSPDGRTYYYNTETKQSTWEK 27 (28)
T ss_dssp EEETTTEEEEEETTTTEEEESC
T ss_pred EECCCCCEEEEECCCCCEECCC
T ss_conf 8998999987589988886579
No 4
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.15 E-value=14 Score=14.81 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=18.1
Q ss_pred EEECCEEEEEECCCCCCCCCC
Q ss_conf 985996999983128744422
Q 028765 168 TVKGGKLYICKAQAGDKRWFK 188 (204)
Q Consensus 168 tV~~GkLYtl~~~a~ekRW~K 188 (204)
.-.+|+.|=.+..++|.+|.|
T Consensus 8 ~~~~G~~YYyN~~T~eS~Wek 28 (29)
T d1o6wa1 8 KDASGRIYYYNTLTKKSTWEK 28 (29)
T ss_dssp ECTTCCEEEEETTTTEEESSC
T ss_pred ECCCCCEEEEECCCCCEECCC
T ss_conf 998999887589989886579
No 5
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}
Probab=16.15 E-value=28 Score=13.00 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEECCEEEEEECCCCCCCCCCH
Q ss_conf 9859969999831287444220
Q 028765 168 TVKGGKLYICKAQAGDKRWFKG 189 (204)
Q Consensus 168 tV~~GkLYtl~~~a~ekRW~K~ 189 (204)
.-.+|+.|-++..+++.+|.+=
T Consensus 12 ~~~~Gr~YY~N~~T~~s~We~P 33 (37)
T d2rm0w1 12 KTADGKTYYYNNRTLESTWEKP 33 (37)
T ss_dssp ECTTCCEEEEETTTTEEESSCC
T ss_pred ECCCCCEEEEECCCCCEECCCC
T ss_conf 9999998878799898837895
No 6
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.43 E-value=23 Score=13.54 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.1
Q ss_pred EECCEEEEEECCCCCCCCCCH
Q ss_conf 859969999831287444220
Q 028765 169 VKGGKLYICKAQAGDKRWFKG 189 (204)
Q Consensus 169 V~~GkLYtl~~~a~ekRW~K~ 189 (204)
-.+|+.|-.+..++|.+|.|-
T Consensus 8 ~~~G~~YYyN~~T~eS~We~P 28 (38)
T d2dk1a1 8 TSEGYHYYYDLISGASQWEKP 28 (38)
T ss_dssp CSTTCCCEEESSSCCEESSCC
T ss_pred CCCCCEEEEECCCCCEECCCC
T ss_conf 899998877899898856799
No 7
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=11.04 E-value=38 Score=12.25 Aligned_cols=11 Identities=18% Similarity=0.174 Sum_probs=6.1
Q ss_pred EEEECCCCCCC
Q ss_conf 18963489854
Q 028765 102 FKLSIPSKWNP 112 (204)
Q Consensus 102 Y~flyPsgW~~ 112 (204)
|-|.=|.|-..
T Consensus 91 flffdP~G~Ly 101 (235)
T d1tl2a_ 91 FLFFDPNGYLY 101 (235)
T ss_dssp EEEECTTSCEE
T ss_pred EEEECCCCEEE
T ss_conf 99988982399
No 8
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.46 E-value=46 Score=11.74 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=13.5
Q ss_pred EEEEEEEEECCEEEEEECCCCCCCC
Q ss_conf 2489999859969999831287444
Q 028765 162 HQLITATVKGGKLYICKAQAGDKRW 186 (204)
Q Consensus 162 H~L~tvtV~~GkLYtl~~~a~ekRW 186 (204)
..++...-++|.||+|...+++-.|
T Consensus 336 ~~~v~~~~k~g~~~vldr~tG~~i~ 360 (582)
T d1flga_ 336 VKATAHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCCEEEECCCCCCCCC
T ss_conf 4235750464407862466873022
No 9
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.51 E-value=50 Score=11.51 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=18.4
Q ss_pred EEEECCEEEEEECCCCCCCCCCH
Q ss_conf 99859969999831287444220
Q 028765 167 ATVKGGKLYICKAQAGDKRWFKG 189 (204)
Q Consensus 167 vtV~~GkLYtl~~~a~ekRW~K~ 189 (204)
..-.+|+.|-.+..+++..|.+-
T Consensus 19 ~~~~~Gr~YYyN~~T~es~We~P 41 (46)
T d1o6wa2 19 AKTADGKVYYYNPTTRETSWTIP 41 (46)
T ss_dssp EECTTCCEEEEETTTTEEESSCC
T ss_pred EECCCCCEEEEECCCCCEECCCC
T ss_conf 79999998877899898754897
No 10
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=6.26 E-value=64 Score=10.85 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=8.5
Q ss_pred EEECCEEEEEECCCCCCCCC
Q ss_conf 98599699998312874442
Q 028765 168 TVKGGKLYICKAQAGDKRWF 187 (204)
Q Consensus 168 tV~~GkLYtl~~~a~ekRW~ 187 (204)
.-.+|+||-|.+.++|.-|.
T Consensus 481 G~~dg~l~A~Da~tGe~lW~ 500 (571)
T d2ad6a1 481 ATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp ECTTSEEEEEETTTCCEEEE
T ss_pred ECCCCEEEEEECCCCCEEEE
T ss_conf 77899699999999868789
Done!