BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028767
         (204 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
          Functionally A Sequence Specific Histone
          Length = 78

 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%)

Query: 31 QEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 87
          +EP+YVNAKQY  IL+RRQARAK E E K+ K R+ YLHESRH+HAM R RG GGRF
Sbjct: 2  EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRF 58


>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 64

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 31 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRF 87
          + P+YVNAKQ+  IL+RR AR K E + +L  K RKPYLHESRH HAMRR RG GGRF
Sbjct: 2  ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRF 59


>pdb|4DNG|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
 pdb|4DNG|B Chain B, Crystal Structure Of Putative Aldehyde Dehydrogenase From
           Bacillus Subtilis Subsp. Subtilis Str. 168
          Length = 485

 Score = 31.2 bits (69), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 46  RRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKT 91
           ++  A++  E  K +++  + YLHE+R    M  AR +GG   K T
Sbjct: 57  QKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKST 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.127    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,261,746
Number of Sequences: 62578
Number of extensions: 172026
Number of successful extensions: 368
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 3
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)