BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028767
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana
GN=NFYA9 PE=2 SV=1
Length = 303
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 130/208 (62%), Gaps = 43/208 (20%)
Query: 1 MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
+M AYGH P+G+ + GMPH+RMPLP EMAQEPV+VNAKQY ILRRRQARAKAELEKKL
Sbjct: 135 VMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKL 194
Query: 61 IKVRKPYLHESRHQHAMRRARGSGGRFAKKTD-DASKGNSEKKGGGSGIRPSLSGSSSGS 119
IK RKPYLHESRHQHAMRR RG+GGRFAKKT+ +ASK +E+K G + S SSS
Sbjct: 195 IKSRKPYLHESRHQHAMRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQ---SPSSSN- 250
Query: 120 EPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGY---QNHGLQASTYHSHLGD 176
SD E W NG Y Q +Q+S Y
Sbjct: 251 ----SDQGEAW--------------------------NGDYRTPQGDEMQSSAY-----K 275
Query: 177 RGETGDCSGKQWGSISSNQASQRPLAIQ 204
R E G+CSG+QW S+SSN SQ LAI+
Sbjct: 276 RREEGECSGQQWNSLSSNHPSQARLAIK 303
>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana
GN=NFYA1 PE=2 SV=1
Length = 272
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 103/133 (77%), Gaps = 4/133 (3%)
Query: 1 MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
+M AYGHQ +G+ ++GMP R LPL+MAQEPVYVNAKQY GILRRR+ARAKAELE+K+
Sbjct: 141 LMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKV 200
Query: 61 IKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSE 120
I+ RKPYLHESRH+HAMRRAR SGGRFAKK++ + E GG R S + +SSGSE
Sbjct: 201 IRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEA---GEDAGGRDRERGSAT-NSSGSE 256
Query: 121 PVPSDSAETWNSS 133
V +DS ET NSS
Sbjct: 257 QVETDSNETLNSS 269
>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana
GN=NFYA6 PE=2 SV=1
Length = 308
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 10 VGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYL 68
V +PQ G+ +RMPLP + + EP++VNAKQY ILRRR+ RAK E + KLIKVRKPYL
Sbjct: 148 VQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYL 207
Query: 69 HESRHQHAMRRARGSGGRF 87
HESRH HA++R RGSGGRF
Sbjct: 208 HESRHLHALKRVRGSGGRF 226
>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana
GN=NFYA3 PE=2 SV=2
Length = 340
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 9 PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPY 67
P PQ V M R+PLP E+ + +PV+VNAKQY I+RRRQ RAK E + KLI+ RKPY
Sbjct: 155 PTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPY 214
Query: 68 LHESRHQHAMRRARGSGGRF 87
LHESRH HA++R RGSGGRF
Sbjct: 215 LHESRHVHALKRPRGSGGRF 234
>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana
GN=NFYA7 PE=2 SV=1
Length = 190
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 77/109 (70%), Gaps = 3/109 (2%)
Query: 14 QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRH 73
Q +G+ +PLP + +EPV+VNAKQY GILRRRQ+RA+ E + K+IK RKPYLHESRH
Sbjct: 82 QLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRH 141
Query: 74 QHAMRRARGSGGRF--AKKTDDASKGNS-EKKGGGSGIRPSLSGSSSGS 119
HA+RR RG GGRF AKK D+ + +S E+K S + +++ SS S
Sbjct: 142 LHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGTS 190
>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana
GN=NFYA5 PE=2 SV=1
Length = 308
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 68/96 (70%), Gaps = 5/96 (5%)
Query: 5 YGHQPVGYP--QFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLI 61
Y P P + +G+ +R+PLP + + EP++VNAKQY ILRRR+ RAK E + KLI
Sbjct: 148 YASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLI 207
Query: 62 KVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDAS 95
K RKPYLHESRH HA++RARGSGGRF KK ++S
Sbjct: 208 KCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESS 243
>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana
GN=NFYA8 PE=2 SV=2
Length = 328
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 63/89 (70%), Gaps = 7/89 (7%)
Query: 1 MMAAYGHQPVGY-PQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEK 58
M AAY Q + PQ R+PLP ++ + EPV+VNAKQ+ I+RRRQ RAK E +
Sbjct: 144 MPAAYLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQN 198
Query: 59 KLIKVRKPYLHESRHQHAMRRARGSGGRF 87
KLIK RKPYLHESRH HA++R RGSGGRF
Sbjct: 199 KLIKARKPYLHESRHVHALKRPRGSGGRF 227
>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana
GN=NFYA4 PE=2 SV=1
Length = 198
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 1 MMAAYGHQPVGYP----QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAEL 56
+ A + P YP Q +GM +PL + +EPV+VNAKQY GILRRRQ+RAK E
Sbjct: 63 VFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEA 122
Query: 57 EKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNSE 100
+ IK +KPY+HESRH HA+RR RG GGRF AKK + K E
Sbjct: 123 RNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKEEEE 168
>sp|Q54S29|NFYA_DICDI Nuclear transcription factor Y subunit alpha OS=Dictyostelium
discoideum GN=nfyA PE=3 SV=1
Length = 517
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 18 MPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAM 77
M +ARM E+ +EP+YVNAKQY IL+RR ARAK E E KL K RK Y HESRHQHA+
Sbjct: 218 MLYARMA---EIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAI 274
Query: 78 RRARGSGGRFAKKTDDA 94
RR RG GGRF K D A
Sbjct: 275 RRQRGCGGRFLTKADQA 291
>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana
GN=NFYA10 PE=2 SV=2
Length = 269
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 73/116 (62%), Gaps = 11/116 (9%)
Query: 22 RMPLPLEMAQE---PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMR 78
R+ +PL+M E +YVN+KQY GI+RRRQ+RAKAE KL + RKPY+H SRH HAMR
Sbjct: 121 RVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMR 177
Query: 79 RARGSGGRFA-KKTDDASKGNSEKKGGGSGI----RPSLSGSSSGSEPVPSDSAET 129
R RGSGGRF KT DA+K + S + +++ S +E SDSA T
Sbjct: 178 RPRGSGGRFLNTKTADAAKQSKPSNSQSSEVFHPENETINSSREANESNLSDSAVT 233
>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana
GN=NFYA2 PE=2 SV=1
Length = 295
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 13/115 (11%)
Query: 5 YGHQPVGYPQFVGMPHA-----RMPLPLEMAQE--PVYVNAKQYMGILRRRQARAKAE-- 55
Y P G Q+ G+ A R+ LPL M E +YVN+KQY GI+RRRQ+RAKA
Sbjct: 102 YTKYPYGEQQYYGVVSAYGSQSRVMLPLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAV 161
Query: 56 LEKKLI--KVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNSEKKGGGS 106
L++K + + RKPY+H SRH HA+RR RGSGGRF K + + G + KKG GS
Sbjct: 162 LDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGS 216
>sp|P23708|NFYA_MOUSE Nuclear transcription factor Y subunit alpha OS=Mus musculus
GN=Nfya PE=1 SV=2
Length = 346
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 22 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 79
R+PLP EM +E P+YVNAKQY IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct: 250 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 309
Query: 80 ARGSGGRF 87
RG GGRF
Sbjct: 310 KRGEGGRF 317
>sp|P23511|NFYA_HUMAN Nuclear transcription factor Y subunit alpha OS=Homo sapiens
GN=NFYA PE=1 SV=2
Length = 347
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 22 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 79
R+PLP EM +E P+YVNAKQY IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct: 251 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 310
Query: 80 ARGSGGRF 87
RG GGRF
Sbjct: 311 KRGEGGRF 318
>sp|P18576|NFYA_RAT Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus
GN=Nfya PE=1 SV=1
Length = 341
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 22 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 79
R+PLP EM +E P+YVNAKQY IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct: 245 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 304
Query: 80 ARGSGGRF 87
RG GGRF
Sbjct: 305 KRGEGGRF 312
>sp|Q5E9S2|NFYA_BOVIN Nuclear transcription factor Y subunit alpha OS=Bos taurus GN=NFYA
PE=2 SV=1
Length = 341
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 22 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 79
R+PLP EM +E P+YVNAKQY IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct: 245 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 304
Query: 80 ARGSGGRF 87
RG GGRF
Sbjct: 305 KRGEGGRF 312
>sp|P06774|HAP2_YEAST Transcriptional activator HAP2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP2 PE=1 SV=1
Length = 265
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 29 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFA 88
+A++P YVNAKQY IL+RR ARAK E + ++ + RKPYLHESRH+HAMRR RG GGRF
Sbjct: 156 IAEQPFYVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEGGRFL 215
Query: 89 KKTDDASKGNSEKKGGGSG 107
T K KK G S
Sbjct: 216 --TAAEIKAMKSKKSGASD 232
>sp|P53768|HAP2_KLULA Transcriptional activator HAP2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP2 PE=3 SV=1
Length = 300
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 54/82 (65%)
Query: 26 PLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGG 85
P E ++P YVNAKQY IL+RR ARAK E K+ + R+PYLHESRH+HAMRR RG GG
Sbjct: 179 PSEPLEQPFYVNAKQYYRILKRRYARAKLEENLKISRERRPYLHESRHKHAMRRPRGQGG 238
Query: 86 RFAKKTDDASKGNSEKKGGGSG 107
RF + A E++G +
Sbjct: 239 RFLTAAEMAEMKRKEEEGTDND 260
>sp|P24488|HAP2_SCHPO Transcriptional activator hap2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap2 PE=3 SV=1
Length = 334
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 48/62 (77%), Gaps = 8/62 (12%)
Query: 32 EPV---YVNAKQYMGILRRRQARAKAELEKKLIKV---RKPYLHESRHQHAMRRARGSGG 85
EPV YVNAKQY IL+RR+ARAK LE++L V +KPYLHESRH+HAMRR RG GG
Sbjct: 5 EPVEGLYVNAKQYHRILKRREARAK--LEERLRGVQTTKKPYLHESRHKHAMRRPRGPGG 62
Query: 86 RF 87
RF
Sbjct: 63 RF 64
>sp|A0AIC6|IF2_LISW6 Translation initiation factor IF-2 OS=Listeria welshimeri serovar
6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=infB
PE=3 SV=1
Length = 780
Score = 37.0 bits (84), Expect = 0.094, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 91 TDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWN---SSASQQDVGGSQAHNM 147
T+ K N K G +P+ + S G++P + A T N SS +QQ GG + +N
Sbjct: 81 TNSNEKSNKPNKPAGQATKPATANKSQGAKPATNKPANTSNQTQSSGNQQQAGGQKRNNN 140
Query: 148 HEARNHANAN 157
N+N
Sbjct: 141 SNRPGGGNSN 150
>sp|O00468|AGRIN_HUMAN Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5
Length = 2067
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 80 ARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSS 133
A G G +D+ G+ E GGGSG L GSS + P + A +NS+
Sbjct: 1056 AFGESGSTDGSSDEELSGDQEASGGGSGGLEPLEGSSVATPGPPVERASCYNSA 1109
>sp|Q71ZZ7|IF2_LISMF Translation initiation factor IF-2 OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=infB PE=3 SV=1
Length = 782
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 91 TDDASKGNSEKKGGGSGIRPSLSGSSSGSEPV---PSDSAETWNSSASQQDVGGSQ 143
T+ K N G +P+ + S G++P P+++++ SS +QQ GG +
Sbjct: 81 TNSNEKSNKPNNPAGQANKPATANKSQGAKPATNKPANTSKQTQSSGNQQQAGGQK 136
>sp|C1L2N1|IF2_LISMC Translation initiation factor IF-2 OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=infB PE=3 SV=1
Length = 782
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 91 TDDASKGNSEKKGGGSGIRPSLSGSSSGSEPV---PSDSAETWNSSASQQDVGGSQ 143
T+ K N G +P+ + S G++P P+++++ SS +QQ GG +
Sbjct: 81 TNSNEKSNKPNNPAGQANKPATANKSQGAKPATNKPANTSKQTQSSGNQQQAGGQK 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,278,548
Number of Sequences: 539616
Number of extensions: 3416152
Number of successful extensions: 11850
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 10900
Number of HSP's gapped (non-prelim): 876
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)