Query 028767
Match_columns 204
No_of_seqs 116 out of 195
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 18:33:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028767.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2257-2261//hhsearch_pdb/028767hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 1.0 1 1 206.6 5.6 63 30-92 1-64 (64)
2 3mxt_A Pantothenate synthetase 1.0 1 1 13.9 0.5 16 66-82 34-49 (285)
3 3n8h_A Pantothenate synthetase 1.0 1 1 13.8 0.5 10 33-42 56-65 (264)
4 3inn_A Pantothenate synthetase 1.0 1 1 12.8 0.5 18 66-84 52-69 (314)
5 3hdf_A Lysozyme; antimicrobial 1.0 1 1 12.1 -0.4 19 35-53 40-58 (140)
6 2xc7_A Phosphorylated adapter 1.0 1 1 12.0 -2.1 14 77-90 60-73 (104)
7 2k2w_A Recombination and DNA r 1.0 1 1 12.0 0.6 12 33-44 19-30 (118)
8 3hde_A Lysozyme; antimicrobial 1.0 1 1 11.8 2.1 15 36-50 66-80 (165)
9 2w4s_A Ankyrin-repeat protein; 1.0 1 1 11.8 -2.2 13 78-90 60-72 (113)
10 1xju_A Lysozyme; secreted inac 1.0 1 1 11.1 2.3 25 34-58 129-153 (163)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=1.00 E-value=1 Score=206.58 Aligned_cols=63 Identities=60% Similarity=0.959 Sum_probs=60.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88962027113279999999999999966654-1399961120457776237999986645688
Q 028767 30 AQEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRFAKKTD 92 (204)
Q Consensus 30 ~~ePvyVNaKQY~rIlrRR~~Rak~e~~~kl~-k~rk~YlHESRH~HAm~R~RG~gGRFl~~~e 92 (204)
.++|||||||||++|||||++|||+|++++++ +.+|||||||||+|||+|+||+||||||++|
T Consensus 1 ~eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 1 MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp --CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9977347899999999999999999983785444466764067889986587689996566879
No 2
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=1.00 E-value=1 Score=13.89 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHHHCCCC
Q ss_conf 96112045777623799
Q 028767 66 PYLHESRHQHAMRRARG 82 (204)
Q Consensus 66 ~YlHESRH~HAm~R~RG 82 (204)
.+|||- |+.-++++|.
T Consensus 34 GaLH~G-HlsLv~~Ar~ 49 (285)
T 3mxt_A 34 GFLHDG-HLSLVKHAKT 49 (285)
T ss_dssp SSCCHH-HHHHHHHHTT
T ss_pred CCCCHH-HHHHHHHHHH
T ss_conf 864589-9999999976
No 3
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=1.00 E-value=1 Score=13.81 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=6.8
Q ss_pred CCCCCCHHHH
Q ss_conf 6202711327
Q 028767 33 PVYVNAKQYM 42 (204)
Q Consensus 33 PvyVNaKQY~ 42 (204)
-|||||.||.
T Consensus 56 SIFVNP~QF~ 65 (264)
T 3n8h_A 56 SIFVNPTQFN 65 (264)
T ss_dssp EECCCGGGCS
T ss_pred EECCCCCCCC
T ss_conf 9746865679
No 4
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=1.00 E-value=1 Score=12.83 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHHHCCCCCC
Q ss_conf 9611204577762379999
Q 028767 66 PYLHESRHQHAMRRARGSG 84 (204)
Q Consensus 66 ~YlHESRH~HAm~R~RG~g 84 (204)
.+||+- |+.-++++|...
T Consensus 52 G~LH~G-HlsLi~~A~~~~ 69 (314)
T 3inn_A 52 GYLHKG-HLELVRRARVEN 69 (314)
T ss_dssp SSCCHH-HHHHHHHHHHHC
T ss_pred CCCCHH-HHHHHHHHHHHC
T ss_conf 863799-999999999869
No 5
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21}
Probab=1.00 E-value=1 Score=12.08 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q ss_conf 0271132799999999999
Q 028767 35 YVNAKQYMGILRRRQARAK 53 (204)
Q Consensus 35 yVNaKQY~rIlrRR~~Rak 53 (204)
.+...|-...|+....++.
T Consensus 40 ~iT~~ea~~ll~~dl~~~~ 58 (140)
T 3hdf_A 40 TYTKAECKALLNKDLATVA 58 (140)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 7799999999999999999
No 6
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=12.02 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=11.4
Q ss_pred HHCCCCCCCCCCCC
Q ss_conf 62379999866456
Q 028767 77 MRRARGSGGRFAKK 90 (204)
Q Consensus 77 m~R~RG~gGRFl~~ 90 (204)
-.|.|-+||=|++-
T Consensus 60 G~RrRTpGGVF~~L 73 (104)
T 2xc7_A 60 GSRRRTPGGVFLNL 73 (104)
T ss_dssp SSSCCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHH
T ss_conf 98577774458999
No 7
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=1.00 E-value=1 Score=11.99 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=8.3
Q ss_pred CCCCCCHHHHHH
Q ss_conf 620271132799
Q 028767 33 PVYVNAKQYMGI 44 (204)
Q Consensus 33 PvyVNaKQY~rI 44 (204)
=||.|+|||.+.
T Consensus 19 FvFLn~KQ~kkl 30 (118)
T 2k2w_A 19 FLFLNAKQYKKL 30 (118)
T ss_dssp EEESCSSTHHHH
T ss_pred EEEECHHHHHHH
T ss_conf 998389999999
No 8
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=1.00 E-value=1 Score=11.77 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=6.0
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 271132799999999
Q 028767 36 VNAKQYMGILRRRQA 50 (204)
Q Consensus 36 VNaKQY~rIlrRR~~ 50 (204)
+...|-...|+....
T Consensus 66 iT~~ea~~lL~~Dl~ 80 (165)
T 3hde_A 66 YTKAECKALLNKDLA 80 (165)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 899999999999999
No 9
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A {Cryptosporidium parvum}
Probab=1.00 E-value=1 Score=11.77 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=10.8
Q ss_pred HCCCCCCCCCCCC
Q ss_conf 2379999866456
Q 028767 78 RRARGSGGRFAKK 90 (204)
Q Consensus 78 ~R~RG~gGRFl~~ 90 (204)
.|.|-+||=|++-
T Consensus 60 sRrRTpGGVF~~L 72 (113)
T 2w4s_A 60 SRRKTIGGVFCYL 72 (113)
T ss_dssp SSBCCHHHHHHHH
T ss_pred CCCCCCCCCHHHH
T ss_conf 7466687203698
No 10
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=1.00 E-value=1 Score=11.13 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2027113279999999999999966
Q 028767 34 VYVNAKQYMGILRRRQARAKAELEK 58 (204)
Q Consensus 34 vyVNaKQY~rIlrRR~~Rak~e~~~ 58 (204)
++++-|...++.+||++.+.+-+.+
T Consensus 129 ~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 129 VNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HHCCCEEEHHHHHHHHHHHHHHHCC
T ss_conf 5559987050699999999998578
Done!