Query 028767
Match_columns 204
No_of_seqs 116 out of 195
Neff 2.9
Searched_HMMs 13730
Date Tue Mar 26 18:35:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028767.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2257-2261//hhsearch_scop/028767hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 24.0 8.5 0.00062 15.6 0.2 18 33-50 49-75 (276)
2 d1ihoa_ c.26.1.4 (A:) Pantothe 19.7 12 0.00086 14.8 0.2 10 33-42 54-63 (282)
3 d2a84a1 c.26.1.4 (A:3-288) Pan 16.9 14 0.001 14.4 0.1 11 33-43 63-73 (286)
4 d1xjua_ d.2.1.3 (A:) Endolysin 6.1 64 0.0047 10.7 2.0 21 36-56 44-64 (158)
5 d2huja1 a.24.26.1 (A:1-120) Hy 4.0 94 0.0068 9.8 3.8 44 33-76 32-75 (120)
6 d1chua3 d.168.1.1 (A:238-353) 3.9 76 0.0055 10.3 -0.5 12 81-92 26-37 (116)
7 d1ev7a_ c.52.1.9 (A:) Restrict 3.7 1E+02 0.0074 9.6 1.0 14 73-86 215-228 (302)
8 d2bs2a3 d.168.1.1 (A:251-371) 3.2 68 0.005 10.6 -1.3 13 81-93 23-35 (121)
9 d1kf6a3 d.168.1.1 (A:226-357) 3.1 97 0.0071 9.7 -0.6 13 81-93 23-35 (132)
10 d1l1ya_ a.102.1.2 (A:) Process 3.1 1.3E+02 0.0093 9.1 0.5 27 3-38 381-407 (642)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=24.01 E-value=8.5 Score=15.62 Aligned_cols=18 Identities=44% Similarity=0.562 Sum_probs=10.5
Q ss_pred CCCCCCHH---------HHHHHHHHHH
Q ss_conf 62027113---------2799999999
Q 028767 33 PVYVNAKQ---------YMGILRRRQA 50 (204)
Q Consensus 33 PvyVNaKQ---------Y~rIlrRR~~ 50 (204)
.|||||.| |+|-+..-..
T Consensus 49 SIFVNP~QF~~~eD~~~YPr~~~~D~~ 75 (276)
T d1v8fa_ 49 SVFVNPLQFGPGEDYHRYPRDLERDRA 75 (276)
T ss_dssp EECCCGGGCCTTSSTTTSCCCHHHHHH
T ss_pred EEEECCCCCCCCCHHHCCCCCHHHHHH
T ss_conf 998667667871012205642563499
No 2
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=19.71 E-value=12 Score=14.81 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=7.7
Q ss_pred CCCCCCHHHH
Q ss_conf 6202711327
Q 028767 33 PVYVNAKQYM 42 (204)
Q Consensus 33 PvyVNaKQY~ 42 (204)
.|||||.||.
T Consensus 54 SIFVNP~QF~ 63 (282)
T d1ihoa_ 54 SIFVNPMQFD 63 (282)
T ss_dssp EECCCGGGCS
T ss_pred EEEECCCCCC
T ss_conf 9973676576
No 3
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.90 E-value=14 Score=14.44 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=6.4
Q ss_pred CCCCCCHHHHH
Q ss_conf 62027113279
Q 028767 33 PVYVNAKQYMG 43 (204)
Q Consensus 33 PvyVNaKQY~r 43 (204)
.|||||.||.-
T Consensus 63 SIFVNP~QF~~ 73 (286)
T d2a84a1 63 SIFVNPMQFGA 73 (286)
T ss_dssp EECCCCCCTTC
T ss_pred EEEECCCCCCC
T ss_conf 98646655675
No 4
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=6.10 E-value=64 Score=10.72 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 271132799999999999999
Q 028767 36 VNAKQYMGILRRRQARAKAEL 56 (204)
Q Consensus 36 VNaKQY~rIlrRR~~Rak~e~ 56 (204)
+-..+-..+|......+...+
T Consensus 44 it~~~a~~ll~~dl~~~~~~v 64 (158)
T d1xjua_ 44 KTDQQIAADWEKNILIAERCI 64 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 478778999999988999999
No 5
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=3.96 E-value=94 Score=9.81 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 62027113279999999999999966654139996112045777
Q 028767 33 PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHA 76 (204)
Q Consensus 33 PvyVNaKQY~rIlrRR~~Rak~e~~~kl~k~rk~YlHESRH~HA 76 (204)
-.|-..|.|--.......+-+..+..-+...|.+|||++-=..+
T Consensus 32 DFy~~VKPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Qie~~ 75 (120)
T d2huja1 32 DFYKDMKPFVDEAKRCADDFLELAIPWVNTERPPYLGELQLRQA 75 (120)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 82354003378899999999999999998727565899999999
No 6
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=3.88 E-value=76 Score=10.33 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=4.9
Q ss_pred CCCCCCCCCCCC
Q ss_conf 999986645688
Q 028767 81 RGSGGRFAKKTD 92 (204)
Q Consensus 81 RG~gGRFl~~~e 92 (204)
||.||+.++++.
T Consensus 26 RGeGa~L~n~~G 37 (116)
T d1chua3 26 RGEGAYLKRPDG 37 (116)
T ss_dssp HHTTCEEECTTS
T ss_pred CCCCEEEEECCC
T ss_conf 299429984799
No 7
>d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia aerocolonigenes [TaxId: 68170]}
Probab=3.73 E-value=1e+02 Score=9.63 Aligned_cols=14 Identities=50% Similarity=0.907 Sum_probs=9.7
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 57776237999986
Q 028767 73 HQHAMRRARGSGGR 86 (204)
Q Consensus 73 H~HAm~R~RG~gGR 86 (204)
.+--|||.|+.||-
T Consensus 215 Q~D~mrRVR~~gga 228 (302)
T d1ev7a_ 215 QDDFMKRVRGSGGA 228 (302)
T ss_dssp SSCTGGGTSSSSSS
T ss_pred HHHHHHHHHCCCCH
T ss_conf 15677776337845
No 8
>d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=3.24 E-value=68 Score=10.59 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 9999866456887
Q 028767 81 RGSGGRFAKKTDD 93 (204)
Q Consensus 81 RG~gGRFl~~~e~ 93 (204)
||.||++++++.+
T Consensus 23 RGeGa~L~n~~G~ 35 (121)
T d2bs2a3 23 RGDGGILRDVDGH 35 (121)
T ss_dssp HHHTCEEECTTCC
T ss_pred CCCCEEEEECCCC
T ss_conf 1685389805896
No 9
>d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli [TaxId: 562]}
Probab=3.15 E-value=97 Score=9.74 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 9999866456887
Q 028767 81 RGSGGRFAKKTDD 93 (204)
Q Consensus 81 RG~gGRFl~~~e~ 93 (204)
||.||.+++++.+
T Consensus 23 RGeGa~Lvn~~g~ 35 (132)
T d1kf6a3 23 RGEGGILVNKNGY 35 (132)
T ss_dssp HHTTCEEECTTCC
T ss_pred CCCCCEEEECCCC
T ss_conf 4785178852774
No 10
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F) {Clostridium thermocellum [TaxId: 1515]}
Probab=3.08 E-value=1.3e+02 Score=9.06 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 566999889985557999888899888889620271
Q 028767 3 AAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNA 38 (204)
Q Consensus 3 ~~yg~q~~~~~~~~G~~~~r~~lP~e~~~ePvyVNa 38 (204)
..|..-|-+-+.|.||. ..++|||..|
T Consensus 381 G~Y~~~P~g~~TFYgM~---------Yd~~PVYhDP 407 (642)
T d1l1ya_ 381 GRYEKYPAGTSTFYGMA---------YVPHPVYADP 407 (642)
T ss_dssp TTTBCCCTTCCEETTEE---------EESSCSCBTT
T ss_pred CCCCCCCCCCCCCCCCC---------CCCCCCCCCC
T ss_conf 86678999985324500---------3677654589
Done!