BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028768
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLA 203
G SP G S L AL++E+V++ + V ATD A A IA+G A+ + +++
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLIS 180
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLA 203
G SP G S L AL++E+V++ + V ATD A A IA+G A+ + +++
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLIS 180
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 2 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 61
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 62 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 121
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
G SP G S L AL++E+V++ + V ATD A A IA+G A+ +
Sbjct: 122 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTL 172
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
G SP G S L AL++E+V++ + V ATD A A IA+G A+ +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTL 175
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
G SP G S L AL++E+V++ + V ATD A A IA+G A+ +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTL 175
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
G SP G S L AL++E+V++ + V ATD A A IA+G A+ +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTL 175
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
NPAVT+ A FP K+V Y AQ+ G + A+ L ++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
G SP G S L AL++E+V++ + V ATD A A IA+G A +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLACTL 175
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALS-----------------AYDEHRVSKLGASVAGGLI 84
++ IAE I T++LVF GSAA++ + +A G
Sbjct: 6 KRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFA 65
Query: 85 VTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTL----RVL 140
+ IYA+G+ISG H+NPAVT+ +V+ FP ++V Y AQL GA S +
Sbjct: 66 IAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIG 125
Query: 141 LHPIKHIGTTS--PSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAV 196
+ +G T+ P S QA++ E+V TF +M +A D +A AGI +G V
Sbjct: 126 AATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTV 183
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
+ + ++AE++ T+LL+ G A + R K A + GL V +I +G+ISG+
Sbjct: 143 YWQAMLAEVVGTFLLMITIMGIAV-----DERAPKGFAGIIIGLTVAGIITTLGNISGSS 197
Query: 100 MNPAVTLA-------FAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVL 140
+NPA T FA W IY + GAV A+LT + L
Sbjct: 198 LNPARTFGPYLNDMIFAGTDL--WNYYSIYVIGPIVGAVLAALTYQYL 243
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALSAYDEHRVSK-----------------LGASVAGGLI 84
++ AE++ T++LVF G+A ++ + K +A L
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 85 VTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP- 143
+ +IY++G ISGAH+NPAVT+A ++ FP ++V Y AQ GA SL + P
Sbjct: 67 IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPA 126
Query: 144 ---IKHIGTTSP-SGSDL-QALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAV 196
+ +G T+P G QA++ E + TF +M V VA D +A AG+ +G V
Sbjct: 127 AATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTV 184
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 39 GFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGA 98
G+ + ++ E I T+LL+ V G A + R A + GL V +I +G+I+G+
Sbjct: 143 GYGQAILTEAIGTFLLMLVIMGVAV-----DERAPPGFAGLVIGLTVGGIITTIGNITGS 197
Query: 99 HMNPAVT----LAFAAVRHFPWKQVPIYAAAQLTGAVSAS 134
+NPA T L + + W+ PIY + GAV+A+
Sbjct: 198 SLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAA 237
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 9 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 66
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
+NPAVT AF + Y AQL GAV+ + L + P + T P S
Sbjct: 67 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 126
Query: 156 DLQALIMEIVVTFSMMFVTSAVAT-DTKAIGELAGIAVGSAVCIT 199
QA I+EI +T + FV AT D + G L +A+ +T
Sbjct: 127 VGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLT 169
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 5 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 62
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
+NPAVT AF + Y AQL GAV+ + L + P + T P S
Sbjct: 63 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 122
Query: 156 DLQALIMEIVVTFSMMFVTSAVAT-DTKAIGELAGIAVGSAVCIT 199
QA I+EI +T + FV AT D + G L +A+ +T
Sbjct: 123 VGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLT 165
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 3 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 60
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
+NPAVT AF + Y AQL GAV+ + L + P + T P S
Sbjct: 61 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 120
Query: 156 DLQALIMEIVVTFSMMFVTSAVAT-DTKAIGELAGIAVGSAVCIT 199
QA I+EI +T + FV AT D + G L +A+ +T
Sbjct: 121 VGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLT 163
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE A+ VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 9 FWRAICAEFFASLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 66
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
+NPAVT AF + Y AQL GAV+ + L + P + T P S
Sbjct: 67 VNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 126
Query: 156 DLQALIMEIVVTFSMMFVTSAVAT-DTKAIGELAGIAVGSAVCIT 199
QA I+EI +T + FV AT D + G L +A+ +T
Sbjct: 127 VGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLT 169
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 13/169 (7%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHM 100
RK++AE T+ LVF CGSA +A + E + G ++A GL V M YAVG ISG H
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHF 90
Query: 101 NPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHI----------GTT 150
NPAV++ FP + Y AQ+ GA+ A+ L V+ I G
Sbjct: 91 NPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEH 150
Query: 151 SPSGSDL-QALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCI 198
SP G L AL++EI++T + + +T + A IA+G A+ +
Sbjct: 151 SPGGYSLVSALLIEIILT-AFFLIVILGSTHGRVPAGFAPIAIGLALTL 198
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 46 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 101
Query: 89 IYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP--IKH 146
+ GHISG H+NPAVT+A R + Y AQ GA+ + L ++ P +
Sbjct: 102 VQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGG 161
Query: 147 IGTTSPSGSDL--QALIMEIVVTFSMMFVTSAVATD--TKAIGELAGIAVGSAVCITSVL 202
+G T+ G+ L++E+++TF ++F A D T G +A +A+G +V I +
Sbjct: 162 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLF 220
Query: 203 A 203
A
Sbjct: 221 A 221
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 7 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 62
Query: 89 IYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP--IKH 146
+ GHISG H+NPAVT+A R + Y AQ GA+ + L ++ P +
Sbjct: 63 VQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGG 122
Query: 147 IGTTSPSGSDL--QALIMEIVVTFSMMFVTSAVATD--TKAIGELAGIAVGSAVCITSVL 202
+G T+ G+ L++E+++TF ++F A D T G +A +A+G +V I +
Sbjct: 123 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLF 181
Query: 203 A 203
A
Sbjct: 182 A 182
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGA-------SVAGGLIVTVMIYAV 92
F R V+AE +A L +F++ GSA Y GA S+A GL + + +V
Sbjct: 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSV 69
Query: 93 GHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH--PIKHIGTT 150
GHISGAH+NPAVTL + +Y AQ GA+ A+ L + P +G
Sbjct: 70 GHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLN 129
Query: 151 --SPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAG---IAVGSAVCITSVLA 203
+P + Q L +EI+ T + V +AT + +L G +A+G +V + +LA
Sbjct: 130 ALAPGVNSGQGLGIEIIGTLQL--VLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLA 185
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 7 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 62
Query: 89 IYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP--IKH 146
+ GHISG H+NPAVT+A R + Y AQ GA+ + L ++ P +
Sbjct: 63 VQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGG 122
Query: 147 IGTTSPSGSDL--QALIMEIVVTFSMMFV--TSAVATDTKAIGELAGIAVGSAVCITSVL 202
+G T+ G+ L++E+++TF ++F S + T G +A +A+G +V I +
Sbjct: 123 LGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLF 181
Query: 203 A 203
A
Sbjct: 182 A 182
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 26/189 (13%)
Query: 33 NEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAY----DEHRV-SKLGASVAGGLIVTV 87
+E F R V+AE +AT L VF++ GSA Y ++ V + S+A GL +
Sbjct: 3 SEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIAT 62
Query: 88 MIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHI 147
+ +VGHISGAH+NPAVTL + +Y AQ GA+ A+ L +
Sbjct: 63 LAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGI------- 115
Query: 148 GTTSPSGSDL------------QALIMEIVVTFSMMF-VTSAVATDTKAIGELAGIAVGS 194
T+S +G+ L Q L +EI+ T ++ V + + +G A +A+G
Sbjct: 116 -TSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGL 174
Query: 195 AVCITSVLA 203
+V + +LA
Sbjct: 175 SVALGHLLA 183
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 9/172 (5%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVMIYAVGHISG 97
F + V AE +A + V ++ GS E V + S+ GL + M+ GHISG
Sbjct: 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISG 62
Query: 98 AHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHP--IKHIGTTSPSGS 155
H+NPAVT+A R + Y AAQ GA+ + L ++ P + +G T G+
Sbjct: 63 GHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGN 122
Query: 156 DL--QALIMEIVVTFSMMF--VTSAVATDTKAIGELAGIAVGSAVCITSVLA 203
L++E+++TF ++F S + T G +A +A+G +V I + A
Sbjct: 123 LTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFA 173
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
FL+ V AE +AT + VF GSA + + L ++A GL + + A+G +SG H
Sbjct: 11 FLKAVFAEFLATLIFVFFGLGSAL--KWPSALPTILQIALAFGLAIGTLAQALGPVSGGH 68
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSG----- 154
+NPA+TLA + Y AAQL GA++ + L + P+ G + +
Sbjct: 69 INPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYG-VAPLNARGNLAVNALNNNT 127
Query: 155 SDLQALIMEIVVTFSMMFVTSAVATDTK 182
+ QA+++E+++TF + A +TD++
Sbjct: 128 TQGQAMVVELILTFQLALCIFA-STDSR 154
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 36 YPPGFLRKVIAEIIATYLLVFVTCGSAA------LSAYDEHRVSKLGASVAGGLIVTVMI 89
+ ++R+ I E + T++L+F+ G+ A LS D +++ + GL V I
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSG-DWYKLC-----LGWGLAVFFGI 58
Query: 90 YAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH 142
+SGAH+N AV++ +++ F K++P+Y AQL GA + T+ L H
Sbjct: 59 LVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYH 111
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 86
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 87 VLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYN 146
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTK 182
G + S + AL EI+ TF +++ T ATD K
Sbjct: 147 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPK 186
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 109
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 110 VLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYN 169
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTK 182
G + S + AL EI+ TF +++ T ATD K
Sbjct: 170 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPK 209
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 56 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 105
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 106 VLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYN 165
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTK 182
G + S + AL EI+ TF +++ T ATD K
Sbjct: 166 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPK 205
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 109
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 110 VLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYN 169
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTK 182
G + S + AL EI+ TF +++ T ATD K
Sbjct: 170 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPK 209
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 40 FLRKVIAEIIATYLLVFVT-------------CGSAALSAYDEHRVSKLGASVAGGLIVT 86
F R IAE IAT L +++T CGS L LG + A G ++
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGL----------LGIAWAFGGMIF 86
Query: 87 VMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-PIK 145
V++Y ISG H+NPAVT R + +Y AQ GA+ ++ + P
Sbjct: 87 VLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYN 146
Query: 146 HIGTTSPS----GSDLQALIMEIVVTFSMMFVTSAVATDTK 182
G + S + AL EI+ TF +++ T ATD K
Sbjct: 147 QFGGGANSVALGYNKGTALGAEIIGTFVLVY-TVFSATDPK 186
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 43 KVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNP 102
+ IAE + T LL+F G A + SV GL V + IY +SGAH+NP
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNP 69
Query: 103 AVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI-------KHIGTTSPSGS 155
AVT+A F ++V + +Q+ GA A+ + L + + HI S
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESV 129
Query: 156 DL---------------QALIMEIVVTFSMMFVTSAVATDTKAI--GELAGIAVG 193
DL QA +E+V+T +M + A+ D + G LA + +G
Sbjct: 130 DLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIG 184
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 82 GLIVTVMIYAVGHISGAHMNPAV--------------TLAFAAVRHFPWKQVPIYAAAQL 127
GL++ V+ ++G ++G MNPA +AF R P+ VP++ +
Sbjct: 184 GLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLF--GPI 241
Query: 128 TGAVSASLTLRVLL 141
GA+ + R L+
Sbjct: 242 VGAIVGAFAYRKLI 255
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 43 KVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNP 102
+ IAE + T LL+F G A + SV GL V + IY +SGAH+NP
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNP 69
Query: 103 AVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI-------KHIGTTSPSGS 155
AVT+A F ++V + +Q+ GA A+ + L + + HI S
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESV 129
Query: 156 DL---------------QALIMEIVVTFSMMFVTSAVATDTKAI--GELAGIAVG 193
DL QA +E+V+T +M + A+ D + G LA + +G
Sbjct: 130 DLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIG 184
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 82 GLIVTVMIYAVGHISGAHMNPAV--------------TLAFAAVRHFPWKQVPIYAAAQL 127
GL++ V+ ++G ++G MNPA +AF R P+ VP++ +
Sbjct: 184 GLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLF--GPI 241
Query: 128 TGAVSASLTLRVLL 141
GA+ + R L+
Sbjct: 242 VGAIVGAFAYRKLI 255
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 78 SVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFP 115
S G V V ++ +SG ++NPAVTLA R P
Sbjct: 89 SFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIP 126
>pdb|1EOK|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase F3
pdb|1EOM|A Chain A, Crystal Structure Of The Complex Of
Endo-beta-n-acetylglucosaminidase F3 With A Biantennary
Complex Octasaccharide
Length = 290
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 18/68 (26%)
Query: 96 SGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLT-----LRVLLHPIKHIGTT 150
SGA NP T P YAA G S S+ L V+ K+ GTT
Sbjct: 130 SGAKPNPIPTF-------------PGYAATGYNGWYSGSMAATPAFLNVISELTKYFGTT 176
Query: 151 SPSGSDLQ 158
+P+ LQ
Sbjct: 177 APNNKQLQ 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,306,679
Number of Sequences: 62578
Number of extensions: 184856
Number of successful extensions: 515
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 35
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)