Query 028768
Match_columns 204
No_of_seqs 188 out of 1529
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 16:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00184 aquaporin NIP1; Provi 100.0 4.8E-37 1E-41 263.6 18.7 169 36-204 49-225 (296)
2 PLN00026 aquaporin NIP; Provi 100.0 1.1E-34 2.4E-39 248.8 17.9 168 37-204 67-234 (298)
3 KOG0223 Aquaporin (major intri 100.0 3.8E-35 8.2E-40 244.2 14.0 170 34-204 4-178 (238)
4 PLN00182 putative aquaporin NI 100.0 3.5E-34 7.6E-39 244.6 19.6 167 38-204 39-206 (283)
5 COG0580 GlpF Glycerol uptake f 100.0 1.1E-34 2.4E-39 241.0 15.4 166 39-204 3-183 (241)
6 KOG0224 Aquaporin (major intri 100.0 9.7E-35 2.1E-39 244.7 11.2 167 34-201 25-213 (316)
7 PTZ00016 aquaglyceroporin; Pro 100.0 1.1E-33 2.4E-38 243.2 17.2 166 38-204 47-232 (294)
8 PLN00183 putative aquaporin NI 100.0 3.2E-32 7E-37 231.7 17.4 169 36-204 40-208 (274)
9 PF00230 MIP: Major intrinsic 100.0 1.2E-32 2.7E-37 228.6 14.3 169 35-203 2-183 (227)
10 PRK05420 aquaporin Z; Provisio 100.0 6.3E-32 1.4E-36 225.3 17.4 163 41-204 2-178 (231)
11 PLN00167 aquaporin TIP5; Provi 100.0 8.6E-31 1.9E-35 221.3 18.1 170 33-204 14-192 (256)
12 PLN00027 aquaporin TIP; Provis 100.0 8.5E-31 1.8E-35 221.1 17.6 169 36-204 15-191 (252)
13 PLN00166 aquaporin TIP2; Provi 100.0 1.3E-30 2.9E-35 219.5 17.3 169 36-204 13-189 (250)
14 cd00333 MIP Major intrinsic pr 100.0 2.8E-28 6.1E-33 203.0 15.4 163 42-204 1-179 (228)
15 TIGR00861 MIP MIP family chann 100.0 2.1E-27 4.6E-32 196.2 14.9 159 46-204 1-171 (216)
16 PLN00182 putative aquaporin NI 99.7 3.3E-17 7.2E-22 140.2 10.1 99 38-142 156-254 (283)
17 cd00333 MIP Major intrinsic pr 99.7 4E-17 8.6E-22 136.0 10.3 100 37-139 126-227 (228)
18 PLN00026 aquaporin NIP; Provi 99.7 1.1E-16 2.4E-21 137.7 9.1 100 38-143 184-283 (298)
19 PLN00183 putative aquaporin NI 99.7 1.4E-16 3E-21 135.9 9.1 111 39-155 159-270 (274)
20 TIGR00861 MIP MIP family chann 99.6 4.4E-16 9.5E-21 128.7 8.4 96 38-136 119-215 (216)
21 KOG0223 Aquaporin (major intri 99.6 2E-15 4.3E-20 126.1 7.0 102 36-144 127-228 (238)
22 PLN00184 aquaporin NIP1; Provi 99.6 1.4E-14 3E-19 124.9 10.5 100 38-143 175-274 (296)
23 PLN00166 aquaporin TIP2; Provi 99.5 1.1E-13 2.3E-18 116.9 11.2 101 38-142 137-237 (250)
24 PRK05420 aquaporin Z; Provisio 99.5 1.3E-13 2.7E-18 115.2 11.1 100 38-143 129-229 (231)
25 PLN00027 aquaporin TIP; Provis 99.5 1.2E-13 2.6E-18 116.8 10.7 103 37-143 138-240 (252)
26 PTZ00016 aquaglyceroporin; Pro 99.5 2.2E-13 4.8E-18 117.5 10.5 102 38-143 181-291 (294)
27 PLN00167 aquaporin TIP5; Provi 99.5 4E-13 8.6E-18 113.8 9.9 102 38-144 141-242 (256)
28 PF00230 MIP: Major intrinsic 99.4 1.4E-12 3.1E-17 108.2 10.0 98 36-137 130-227 (227)
29 COG0580 GlpF Glycerol uptake f 99.4 4.4E-12 9.5E-17 105.9 10.3 99 39-142 134-240 (241)
30 KOG0224 Aquaporin (major intri 98.7 1.8E-08 3.9E-13 86.0 5.6 105 34-142 161-275 (316)
31 PRK09713 focB putative formate 81.7 34 0.00073 29.6 11.6 102 73-177 66-181 (282)
32 PRK10805 formate transporter; 80.0 39 0.00084 29.2 12.5 102 73-177 67-182 (285)
33 PF01226 Form_Nir_trans: Forma 77.0 30 0.00065 29.2 9.6 106 70-177 53-171 (250)
34 COG2116 FocA Formate/nitrite f 72.6 61 0.0013 27.8 12.8 137 38-177 29-179 (265)
35 PF12811 BaxI_1: Bax inhibitor 61.1 84 0.0018 27.1 9.0 44 98-141 109-164 (274)
36 PF03033 Glyco_transf_28: Glyc 55.5 4.1 8.8E-05 30.1 0.1 21 93-113 5-25 (139)
37 PRK12446 undecaprenyldiphospho 46.5 4.7 0.0001 35.5 -0.9 21 92-112 7-27 (352)
38 smart00831 Cation_ATPase_N Cat 39.2 24 0.00053 22.6 1.9 28 34-61 30-57 (64)
39 PRK11562 nitrite transporter N 36.9 2.7E+02 0.0058 23.8 13.2 103 73-177 57-171 (268)
40 PF04632 FUSC: Fusaric acid re 29.0 4.7E+02 0.01 24.6 9.5 46 101-146 371-416 (650)
41 PRK15120 lipopolysaccharide AB 28.1 1.5E+02 0.0034 25.9 5.7 19 45-63 270-288 (366)
42 TIGR02908 CoxD_Bacillus cytoch 23.0 3.2E+02 0.0069 20.3 8.2 24 40-63 24-47 (110)
43 PRK15071 lipopolysaccharide AB 22.6 1.9E+02 0.0041 25.2 5.2 59 46-104 276-335 (356)
44 PF03605 DcuA_DcuB: Anaerobic 21.1 3.5E+02 0.0075 24.4 6.5 55 4-58 187-241 (364)
45 PF06592 DUF1138: Protein of u 21.1 1E+02 0.0022 21.0 2.4 32 122-153 3-34 (73)
46 PF10767 DUF2593: Protein of u 21.0 48 0.001 25.6 0.9 21 107-128 65-85 (144)
No 1
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=4.8e-37 Score=263.64 Aligned_cols=169 Identities=48% Similarity=0.782 Sum_probs=144.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCC
Q 028768 36 YPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFP 115 (204)
Q Consensus 36 ~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~ 115 (204)
.+.+++|++++||+||++|+|++|++.+.....+...+++.++++||+++++.+++++++||+|+|||||+++++.|+++
T Consensus 49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~ 128 (296)
T PLN00184 49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP 128 (296)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence 44578999999999999999999998765433222345677899999999999999999999999999999999999999
Q ss_pred ccccchhhhhchHHHHHHHHHHHHHhcCcc--------cccccCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCccCcc
Q 028768 116 WKQVPIYAAAQLTGAVSASLTLRVLLHPIK--------HIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGEL 187 (204)
Q Consensus 116 ~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~~--------~~~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~~~~ 187 (204)
|.+.++|+++|++|+++|+++++.+++... ....+.|..+.+++|+.|+++|++|++++++++.|++..+..
T Consensus 129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~~ 208 (296)
T PLN00184 129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGEL 208 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCcc
Confidence 999999999999999999999999885221 112345666889999999999999999999987776655668
Q ss_pred hHHHHHHHHHHHHhhcC
Q 028768 188 AGIAVGSAVCITSVLAG 204 (204)
Q Consensus 188 ~~~~iG~~v~~~~~~~G 204 (204)
.|+.||++|.+.+++.|
T Consensus 209 ~~l~IG~~v~~~~~~~g 225 (296)
T PLN00184 209 AGLAIGSTVLLNVLIAA 225 (296)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 99999999999988765
No 2
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=1.1e-34 Score=248.76 Aligned_cols=168 Identities=44% Similarity=0.764 Sum_probs=145.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCc
Q 028768 37 PPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPW 116 (204)
Q Consensus 37 ~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~ 116 (204)
+.+++|++++||+||++|+|++++....+.......+++.+++++|+++++.+++++++||+|+|||||+++++.++++|
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~ 146 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPW 146 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcH
Confidence 45688999999999999999999865543322222356677899999999999999999999999999999999999999
Q ss_pred cccchhhhhchHHHHHHHHHHHHHhcCcccccccCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCccCcchHHHHHHHH
Q 028768 117 KQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAV 196 (204)
Q Consensus 117 ~~~~~YiiaQ~lGa~~g~~l~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~~~~~~~~iG~~v 196 (204)
.+.|+|+++|++|+++|+++++.++++...-+.+.|+.+..++++.|+++|++|++++++++.|+|+.+...++.+|++|
T Consensus 147 ~~~~~YiiaQilGAi~aa~~~~~~~~~~~~~g~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~~~~~~l~iGl~V 226 (298)
T PLN00026 147 KHVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATV 226 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCceeeecccHHHHHHHHHHHHHHHHHhheeeecCCCCcCCccchHHHHHH
Confidence 99999999999999999999999997644344577877889999999999999999999886676665667899999999
Q ss_pred HHHHhhcC
Q 028768 197 CITSVLAG 204 (204)
Q Consensus 197 ~~~~~~~G 204 (204)
++.++++|
T Consensus 227 ~~~~l~~g 234 (298)
T PLN00026 227 MLNILVAG 234 (298)
T ss_pred HHHHHHhc
Confidence 99988765
No 3
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-35 Score=244.17 Aligned_cols=170 Identities=42% Similarity=0.607 Sum_probs=151.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhcc
Q 028768 34 EHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRH 113 (204)
Q Consensus 34 ~~~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~ 113 (204)
+.++.+.+|++++||++|++++|++|++...++......+.+.+++.+|+.+++.+++++++||||+|||||+++++.|+
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~ 83 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGK 83 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCC
Confidence 45667899999999999999999999998866644445567789999999999999999999999999999999999999
Q ss_pred CCccccchhhhhchHHHHHHHHHHHHHhcCc---ccccc--cCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCccCcch
Q 028768 114 FPWKQVPIYAAAQLTGAVSASLTLRVLLHPI---KHIGT--TSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELA 188 (204)
Q Consensus 114 ~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~---~~~~~--~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~~~~~ 188 (204)
+++.+...|+++|++|+++|+.+.+.+.++. +..+. ..|+.+..|+++.|++.||.|++++++++.|+|+. .++
T Consensus 84 isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-~~a 162 (238)
T KOG0223|consen 84 ISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-ELA 162 (238)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-ccH
Confidence 9999999999999999999999999999763 22332 34566889999999999999999999988999876 999
Q ss_pred HHHHHHHHHHHHhhcC
Q 028768 189 GIAVGSAVCITSVLAG 204 (204)
Q Consensus 189 ~~~iG~~v~~~~~~~G 204 (204)
|+.||+++.+.++++|
T Consensus 163 ~l~IG~~v~~~~l~~g 178 (238)
T KOG0223|consen 163 PLAIGFSVGLNILAAG 178 (238)
T ss_pred HHHHHHHHHHHHHeec
Confidence 9999999999999876
No 4
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=3.5e-34 Score=244.58 Aligned_cols=167 Identities=49% Similarity=0.803 Sum_probs=141.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~ 117 (204)
.+++|++++||+||++|+|+++|+.+.........+.+.++++||+++++.+++++++||+|+|||||+++++.|+++|.
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~ 118 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWY 118 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCHH
Confidence 46789999999999999999999876432211223456788899999999999999999999999999999999999999
Q ss_pred ccchhhhhchHHHHHHHHHHHHHhcCc-ccccccCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCccCcchHHHHHHHH
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLHPI-KHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAV 196 (204)
Q Consensus 118 ~~~~YiiaQ~lGa~~g~~l~~~~~~~~-~~~~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~~~~~~~~iG~~v 196 (204)
+.++|+++|++|+++|+++++.+++.. .....+.|+.+.+++++.|+++|++|++++++++.|++..+...|+.+|++|
T Consensus 119 ~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~~~~~~~l~iGl~V 198 (283)
T PLN00182 119 QVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRAVGELAGIAVGMTI 198 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccceeeCCCCcchHHHHHHHHHHHHHHHHHHHhheeccccCCcchhHHHHHHH
Confidence 999999999999999999999988532 2223467777889999999999999999999876666655567899999999
Q ss_pred HHHHhhcC
Q 028768 197 CITSVLAG 204 (204)
Q Consensus 197 ~~~~~~~G 204 (204)
++.+++.|
T Consensus 199 ~~~~~~~g 206 (283)
T PLN00182 199 ILNVFVAG 206 (283)
T ss_pred HHHHHHcc
Confidence 99988764
No 5
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=241.04 Aligned_cols=166 Identities=37% Similarity=0.493 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCC
Q 028768 39 GFLRKVIAEIIATYLLVFVTCGSAALS---AYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFP 115 (204)
Q Consensus 39 ~~~~~~~~Ef~gT~~lv~~~~g~~~~~---~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~ 115 (204)
++.|++++||+||++|+++++|+.+.. ++++...++..++++||+.+++.+|+++++||+|+|||||+++++.|+++
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp 82 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFP 82 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCC
Confidence 467788999999999999999998743 33456677888999999999999999999999999999999999999999
Q ss_pred ccccchhhhhchHHHHHHHHHHHHHhcCc----c-----c--ccccCCC-CChHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 028768 116 WKQVPIYAAAQLTGAVSASLTLRVLLHPI----K-----H--IGTTSPS-GSDLQALIMEIVVTFSMMFVTSAVATDTKA 183 (204)
Q Consensus 116 ~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~----~-----~--~~~~~p~-~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~ 183 (204)
|++.+.|+++|++|+++|+.+++.++++. + . ..+|.|. .+..++|+.|+++||+|+++|+++++|++.
T Consensus 83 ~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~ 162 (241)
T COG0580 83 WRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 99999999999999999999999999742 1 1 2257775 477899999999999999999998766665
Q ss_pred cCcchHHHHHHHHHHHHhhcC
Q 028768 184 IGELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 184 ~~~~~~~~iG~~v~~~~~~~G 204 (204)
.+.++|+.||+.|...++..|
T Consensus 163 ~~~~apl~iGllv~~i~~s~g 183 (241)
T COG0580 163 NAGFAPLAIGLLVTAIGLSLG 183 (241)
T ss_pred cccchHHHHHHHHHHHHHHhc
Confidence 335999999999999877643
No 6
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.7e-35 Score=244.69 Aligned_cols=167 Identities=29% Similarity=0.438 Sum_probs=143.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc-cccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhc
Q 028768 34 EHYPPGFLRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVR 112 (204)
Q Consensus 34 ~~~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~-~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g 112 (204)
.+.++++.|++++||+||++|+++++|+.++.. +.....+++.+.++||+++++.+|+.|++||||+|||||+++++.|
T Consensus 25 ~~i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g 104 (316)
T KOG0224|consen 25 LHIRNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILG 104 (316)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhc
Confidence 345678999999999999999999999988543 3344567888999999999999999999999999999999999999
Q ss_pred cCCccccchhhhhchHHHHHHHHHHHHHhcCc---------------cc--ccccCCC--CChHHHHHHHHHHHHHHHHH
Q 028768 113 HFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI---------------KH--IGTTSPS--GSDLQALIMEIVVTFSMMFV 173 (204)
Q Consensus 113 ~~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~---------------~~--~~~~~p~--~s~~~~~~~E~~~T~~L~~~ 173 (204)
|++|+|.++|+++|++||++|++.+|.+|+.. .. ..+|+|. .+.+++|+.|+++|.+|+.+
T Consensus 105 ~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~ 184 (316)
T KOG0224|consen 105 RLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLC 184 (316)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998621 11 1246775 48899999999999999999
Q ss_pred HHHhccCCCcc--CcchHHHHHHHHHHHHh
Q 028768 174 TSAVATDTKAI--GELAGIAVGSAVCITSV 201 (204)
Q Consensus 174 i~~~~~d~~~~--~~~~~~~iG~~v~~~~~ 201 (204)
++++ +|+|+. +.+-|+.||+.|.+...
T Consensus 185 l~aI-~D~rN~~p~g~~p~~iG~lv~~Ig~ 213 (316)
T KOG0224|consen 185 LFAI-TDKRNPIPTGLHPLVIGILVVAIGM 213 (316)
T ss_pred eeEE-ecCCCCCCcchhHHHHHHHHHHHHH
Confidence 9998 677763 45789999998887643
No 7
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=1.1e-33 Score=243.16 Aligned_cols=166 Identities=30% Similarity=0.414 Sum_probs=138.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~ 117 (204)
++++|++++||+||++++|+++++......++...+.+.++++||+++++.+++++++||+|+|||||+++++.|+++|.
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~ 126 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWK 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHH
Confidence 67889999999999999999999876432222234566789999999999999999999999999999999999999999
Q ss_pred ccchhhhhchHHHHHHHHHHHHHhcCc----c--------------cccccCCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLHPI----K--------------HIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVAT 179 (204)
Q Consensus 118 ~~~~YiiaQ~lGa~~g~~l~~~~~~~~----~--------------~~~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~ 179 (204)
+.+.|+++|++|+++|++++|.++++. + ...++.|+.+..++++.|+++|++|+++++++ .
T Consensus 127 ~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~~s~~~a~~~E~i~T~iLv~~ila~-~ 205 (294)
T PTZ00016 127 KLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPREGNFYAIFSELILTAILLLVILAI-T 205 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCCccHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 999999999999999999999988631 0 01135666678899999999999999999998 4
Q ss_pred CCCcc--CcchHHHHHHHHHHHHhhcC
Q 028768 180 DTKAI--GELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 180 d~~~~--~~~~~~~iG~~v~~~~~~~G 204 (204)
|+|+. ....|+.||++|.+.++..|
T Consensus 206 d~~~~~~~~~~pl~IGl~v~~i~~~~g 232 (294)
T PTZ00016 206 DPNNCPAFNYLPVAVGLLVFVIGISFG 232 (294)
T ss_pred cCccCCCcCcccHHHHHHHHHHHHhcc
Confidence 55542 34689999999988777544
No 8
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=3.2e-32 Score=231.68 Aligned_cols=169 Identities=33% Similarity=0.620 Sum_probs=143.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCC
Q 028768 36 YPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFP 115 (204)
Q Consensus 36 ~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~ 115 (204)
.+.+.+|++++||++|++++|+++++...........+.+.+++.+|+.+++.+++++++||+|+|||||+++++.|+++
T Consensus 40 ~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~ 119 (274)
T PLN00183 40 MDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFP 119 (274)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCC
Confidence 45678899999999999999999988764332222234566789999999999999999999999999999999999999
Q ss_pred ccccchhhhhchHHHHHHHHHHHHHhcCcccccccCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCccCcchHHHHHHH
Q 028768 116 WKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSA 195 (204)
Q Consensus 116 ~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~~~~~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~~~~~~~~iG~~ 195 (204)
|.+.|+|+++|++|+++|+.+++.+++.......+.|..+..++++.|+++|++|+++++.+..++++.+...|+.+|++
T Consensus 120 ~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~p~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~~~~~~~l~iGl~ 199 (274)
T PLN00183 120 WSKVPLYITAQTVGSVLATYVGVSVYGVKADLMTTKPAQGCSSAFWVEFIATFIVMFLAASLTSQPQSLGHLSGFVIGIA 199 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHhhheeeccccCCCCceehHHHHH
Confidence 99999999999999999999999988654444456677777899999999999999999998555444455789999999
Q ss_pred HHHHHhhcC
Q 028768 196 VCITSVLAG 204 (204)
Q Consensus 196 v~~~~~~~G 204 (204)
+++.++++|
T Consensus 200 v~~~v~~~g 208 (274)
T PLN00183 200 IGLAVLITG 208 (274)
T ss_pred HHHHHHhcc
Confidence 999888764
No 9
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=1.2e-32 Score=228.56 Aligned_cols=169 Identities=40% Similarity=0.542 Sum_probs=139.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhh-cccccc-----CccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHH
Q 028768 35 HYPPGFLRKVIAEIIATYLLVFVTCGSAA-LSAYDE-----HRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAF 108 (204)
Q Consensus 35 ~~~~~~~~~~~~Ef~gT~~lv~~~~g~~~-~~~~~~-----~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~ 108 (204)
.++.+++|++++||+||++++|+++++.. ...... ...++..+++++|+.+++.++.++++||+|+|||||++.
T Consensus 2 ~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~ 81 (227)
T PF00230_consen 2 LKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAF 81 (227)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhhe
Confidence 34568899999999999999999998655 222211 123567889999999999999999999999999999999
Q ss_pred HHhccCCccccchhhhhchHHHHHHHHHHHHHhcCc---cccccc--CCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 028768 109 AAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI---KHIGTT--SPSGSDLQALIMEIVVTFSMMFVTSAVATDTKA 183 (204)
Q Consensus 109 ~l~g~~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~---~~~~~~--~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~ 183 (204)
++.|+++|.+.+.|+++|++|+++|+.+.+.++++. ...+.+ .|..+..++++.|+++|++|+++++.+.+|+++
T Consensus 82 ~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~ 161 (227)
T PF00230_consen 82 ALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRK 161 (227)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSS
T ss_pred eeeeeecccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhhhhhhhhhhhHHHhhhhhhcccccc
Confidence 999999999999999999999999999999999753 122333 345688999999999999999999999766655
Q ss_pred c--CcchHHHHHHHHHHHHhhc
Q 028768 184 I--GELAGIAVGSAVCITSVLA 203 (204)
Q Consensus 184 ~--~~~~~~~iG~~v~~~~~~~ 203 (204)
. +.+.|+.||+++.+..+.+
T Consensus 162 ~~~~~~~p~~ig~~v~~~~~~~ 183 (227)
T PF00230_consen 162 FPLGPLAPLAIGLTVGALVLAG 183 (227)
T ss_dssp STSSGGHHHHHHHHHHHHHHHH
T ss_pred cccccccceeEEEEEeeccccc
Confidence 3 3468999999998877654
No 10
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=6.3e-32 Score=225.33 Aligned_cols=163 Identities=39% Similarity=0.549 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-ccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcccc
Q 028768 41 LRKVIAEIIATYLLVFVTCGSAALSAY-DEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQV 119 (204)
Q Consensus 41 ~~~~~~Ef~gT~~lv~~~~g~~~~~~~-~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~~~ 119 (204)
+|++++||+||++|+|+++++....+. ++...+++.+++++|+++++.+++++++||+|+|||||+++++.|+++|.+.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 689999999999999999998654221 1222346678999999999999999999999999999999999999999999
Q ss_pred chhhhhchHHHHHHHHHHHHHhcCccc-------c-----cccCCC-CChHHHHHHHHHHHHHHHHHHHHhccCCCccCc
Q 028768 120 PIYAAAQLTGAVSASLTLRVLLHPIKH-------I-----GTTSPS-GSDLQALIMEIVVTFSMMFVTSAVATDTKAIGE 186 (204)
Q Consensus 120 ~~YiiaQ~lGa~~g~~l~~~~~~~~~~-------~-----~~~~p~-~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~~~ 186 (204)
+.|+++|++|+++|+.+++.++++... . +.+.|. .+..++++.|+++|++|+++++.. .|+|+.+.
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~~~~~ 160 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPGGYSLLAALVCEVVLTAFFLLVILGA-TDKRAPAG 160 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCc
Confidence 999999999999999999988753211 1 112343 367899999999999999999997 56666566
Q ss_pred chHHHHHHHHHHHHhhcC
Q 028768 187 LAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 187 ~~~~~iG~~v~~~~~~~G 204 (204)
..|+.||+++.+.++++|
T Consensus 161 ~~p~~iGl~v~~~~~~~~ 178 (231)
T PRK05420 161 FAPIAIGLALTLIHLISI 178 (231)
T ss_pred chHHHHHHHHHHHHHHhh
Confidence 899999999999887654
No 11
>PLN00167 aquaporin TIP5; Provisional
Probab=99.97 E-value=8.6e-31 Score=221.26 Aligned_cols=170 Identities=29% Similarity=0.428 Sum_probs=139.2
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc---cc--cCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHH
Q 028768 33 NEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSA---YD--EHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLA 107 (204)
Q Consensus 33 ~~~~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~---~~--~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla 107 (204)
++..+++++|++++||+||++++|+++++..... .+ ....+++.++++||+++++.+++++++||+|+|||||++
T Consensus 14 ~~~~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~ 93 (256)
T PLN00167 14 QQSVTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFG 93 (256)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHH
Confidence 3345678899999999999999999999876332 11 112357789999999999999999999999999999999
Q ss_pred HHHhccCCccccchhhhhchHHHHHHHHHHHHHhcCcccccc--cCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc--
Q 028768 108 FAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGT--TSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKA-- 183 (204)
Q Consensus 108 ~~l~g~~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~~~~~~--~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~-- 183 (204)
+++.|+++|.+.++|+++|++|+++|+.+++.+++.. .... ..++.+..++++.|+++|++|+++++.+. |+|+
T Consensus 94 ~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~-~~~~~~ 171 (256)
T PLN00167 94 MAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQ-HVPTYKIAEEMTGFGASVLEGVLTFGLVYTVYAAG-DPRRGL 171 (256)
T ss_pred HHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccc-cccccccCcccchHHHHHHHHHHHHHHHHHHHHhc-cccccC
Confidence 9999999999999999999999999999998887532 1111 12234678899999999999999999874 4443
Q ss_pred cCcchHHHHHHHHHHHHhhcC
Q 028768 184 IGELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 184 ~~~~~~~~iG~~v~~~~~~~G 204 (204)
.+...|+.||++|.+.++.+|
T Consensus 172 ~~~~~pl~iGl~v~~~~~~~g 192 (256)
T PLN00167 172 LGAIGPLAIGLVAGANVLAAG 192 (256)
T ss_pred CCCcchHHHHHHHHHHHHhcc
Confidence 234789999999999888764
No 12
>PLN00027 aquaporin TIP; Provisional
Probab=99.97 E-value=8.5e-31 Score=221.10 Aligned_cols=169 Identities=29% Similarity=0.354 Sum_probs=140.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcc---ccc--cCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHH
Q 028768 36 YPPGFLRKVIAEIIATYLLVFVTCGSAALS---AYD--EHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAA 110 (204)
Q Consensus 36 ~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~---~~~--~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l 110 (204)
++++.+|++++||+||++|+|+++++.+.. ..+ ....+++.+++++|+.+++.+++++++||+|+|||+|+++++
T Consensus 15 ~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~ 94 (252)
T PLN00027 15 SHPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFI 94 (252)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHH
Confidence 345788999999999999999999986421 111 112356678999999999999999999999999999999999
Q ss_pred hccCCccccchhhhhchHHHHHHHHHHHHHhcCcc-cccccCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcc--Ccc
Q 028768 111 VRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIK-HIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAI--GEL 187 (204)
Q Consensus 111 ~g~~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~~-~~~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~--~~~ 187 (204)
.|+++|.+.++|+++|++|+++|+.+++.+.+... ....+.|+.+..++++.|+++||+|+++++.++.|+|+. +.+
T Consensus 95 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~ 174 (252)
T PLN00027 95 GGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGII 174 (252)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccccCCccch
Confidence 99999999999999999999999999988764321 112355667889999999999999999999887676643 357
Q ss_pred hHHHHHHHHHHHHhhcC
Q 028768 188 AGIAVGSAVCITSVLAG 204 (204)
Q Consensus 188 ~~~~iG~~v~~~~~~~G 204 (204)
.|+.||+++...++++|
T Consensus 175 ~p~~iGl~v~~~~~~~g 191 (252)
T PLN00027 175 APIAIGFIVGANILAGG 191 (252)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 89999999999888764
No 13
>PLN00166 aquaporin TIP2; Provisional
Probab=99.97 E-value=1.3e-30 Score=219.47 Aligned_cols=169 Identities=30% Similarity=0.370 Sum_probs=139.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhcc-c-c---ccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHH
Q 028768 36 YPPGFLRKVIAEIIATYLLVFVTCGSAALS-A-Y---DEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAA 110 (204)
Q Consensus 36 ~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~-~-~---~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l 110 (204)
++.+.+|++++|++||++|+|+++++.... . . ......++.+++++|+.+++.+++++++||+|+|||||+++++
T Consensus 13 ~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l 92 (250)
T PLN00166 13 FSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAI 92 (250)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 346778999999999999999999986531 1 1 1112345678999999999999999999999999999999999
Q ss_pred hccCCccccchhhhhchHHHHHHHHHHHHHhcCccc-ccccCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcc--Ccc
Q 028768 111 VRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH-IGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAI--GEL 187 (204)
Q Consensus 111 ~g~~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~~~-~~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~--~~~ 187 (204)
.|+++|.+.++|+++|++|+++|+.+++.+++.... .....++.+..++++.|+++|++|+++++.++.|+|+. +.+
T Consensus 93 ~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~~~~~~ 172 (250)
T PLN00166 93 GGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTI 172 (250)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999999999999999999988753211 11123456788999999999999999999987666542 357
Q ss_pred hHHHHHHHHHHHHhhcC
Q 028768 188 AGIAVGSAVCITSVLAG 204 (204)
Q Consensus 188 ~~~~iG~~v~~~~~~~G 204 (204)
.|+.||+++++.++.+|
T Consensus 173 ~p~~iGl~v~~~~~~~~ 189 (250)
T PLN00166 173 APIAIGFIVGANILAAG 189 (250)
T ss_pred hhHHHHHHHHHHHHccc
Confidence 89999999999988764
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.96 E-value=2.8e-28 Score=202.99 Aligned_cols=163 Identities=38% Similarity=0.535 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc-CccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCccccc
Q 028768 42 RKVIAEIIATYLLVFVTCGSAALSAYDE-HRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVP 120 (204)
Q Consensus 42 ~~~~~Ef~gT~~lv~~~~g~~~~~~~~~-~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~~~~ 120 (204)
|++++||+||++++++++++.......+ ...+++.+++.||+.+.+.+++++++||+|+|||+|+++++.|+++|.+.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 5689999999999999999876433221 223456789999999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCcc----ccc-------ccCC--CCChHHHHHHHHHHHHHHHHHHHHhccCCCc--cC
Q 028768 121 IYAAAQLTGAVSASLTLRVLLHPIK----HIG-------TTSP--SGSDLQALIMEIVVTFSMMFVTSAVATDTKA--IG 185 (204)
Q Consensus 121 ~YiiaQ~lGa~~g~~l~~~~~~~~~----~~~-------~~~p--~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~--~~ 185 (204)
+|+++|++|+++|+.+++.++++.. ... ++.| +.+..++++.|+++|++|+++++....+++. .+
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~~~ 160 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPG 160 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCCCccHHHHHHHHHHHHHHHHHHHHHHccccccCCCC
Confidence 9999999999999999999886421 110 1334 3477899999999999999999998554443 34
Q ss_pred cchHHHHHHHHHHHHhhcC
Q 028768 186 ELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 186 ~~~~~~iG~~v~~~~~~~G 204 (204)
...|+.+|+++.+.+..+|
T Consensus 161 ~~~~~~iGl~v~~~~~~~g 179 (228)
T cd00333 161 GLAPLAIGLLVAAIGLAGG 179 (228)
T ss_pred CcHHHHHHHHHHHHHHHhh
Confidence 5789999999999887654
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.95 E-value=2.1e-27 Score=196.21 Aligned_cols=159 Identities=36% Similarity=0.491 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccc---cC--ccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCccccc
Q 028768 46 AEIIATYLLVFVTCGSAALSAYD---EH--RVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVP 120 (204)
Q Consensus 46 ~Ef~gT~~lv~~~~g~~~~~~~~---~~--~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~~~~ 120 (204)
+||+||++++|+++++......+ +. ..++..+++.||+.+...+++++++||+|+|||||+++++.|+++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 59999999999999987642211 11 11466789999999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCcc--ccc-cc--CCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc--cCcchHHHHH
Q 028768 121 IYAAAQLTGAVSASLTLRVLLHPIK--HIG-TT--SPSGSDLQALIMEIVVTFSMMFVTSAVATDTKA--IGELAGIAVG 193 (204)
Q Consensus 121 ~YiiaQ~lGa~~g~~l~~~~~~~~~--~~~-~~--~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~--~~~~~~~~iG 193 (204)
.|+++|++|+++|+.+++.++++.. ... .. .++.+..++++.|+++|++|+++++....++++ .+...|+.+|
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~iG 160 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQAFFVEFIGTAILVLVIFATTDPRNRVPRGGFAPLAIG 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHHHHHHHHHHHHHHHHHheeecCCCCCCCCccHHHHHH
Confidence 9999999999999999999886531 111 12 223577899999999999999999987443222 1237899999
Q ss_pred HHHHHHHhhcC
Q 028768 194 SAVCITSVLAG 204 (204)
Q Consensus 194 ~~v~~~~~~~G 204 (204)
+++...+...|
T Consensus 161 ~~v~~~~~~~g 171 (216)
T TIGR00861 161 LLVFLIHLSMG 171 (216)
T ss_pred HHHHHHHHhCC
Confidence 99999987654
No 16
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.72 E-value=3.3e-17 Score=140.22 Aligned_cols=99 Identities=29% Similarity=0.444 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~ 117 (204)
.+.++.+++|+++|++|++++++....++ .. + ...++++|+.+++.++..+++||+|+|||+|+++++.++ .|.
T Consensus 156 ~s~~~a~~~E~l~TfiLv~~i~~~~~~~~-~~---~-~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~~~ 229 (283)
T PLN00182 156 DSSGQALVAEIIISFLLMFVISGVATDSR-AV---G-ELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-RYK 229 (283)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhheeccc-cC---C-cchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-ccc
Confidence 35789999999999999999987653221 11 1 135889999999999999999999999999999999866 589
Q ss_pred ccchhhhhchHHHHHHHHHHHHHhc
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLH 142 (204)
Q Consensus 118 ~~~~YiiaQ~lGa~~g~~l~~~~~~ 142 (204)
+.|+|+++|++|+++|+++++.+..
T Consensus 230 ~~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 230 GIWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998874
No 17
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.71 E-value=4e-17 Score=135.96 Aligned_cols=100 Identities=28% Similarity=0.333 Sum_probs=85.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccC--
Q 028768 37 PPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHF-- 114 (204)
Q Consensus 37 ~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~-- 114 (204)
+.+.+|.++.|+++|+++++.+++.....+ ........++.+|+.+.+.++.++++||+|+|||+|+++++.++.
T Consensus 126 ~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~---~~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~ 202 (228)
T cd00333 126 GVSNGNAFFVEFIGTFILVLVVFATTDDPN---GPPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLAR 202 (228)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHccccc---cCCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhcccc
Confidence 457889999999999999999988653211 111233568999999999999999999999999999999999998
Q ss_pred CccccchhhhhchHHHHHHHHHHHH
Q 028768 115 PWKQVPIYAAAQLTGAVSASLTLRV 139 (204)
Q Consensus 115 ~~~~~~~YiiaQ~lGa~~g~~l~~~ 139 (204)
+|.+.|+|+++|++|+++|+++++.
T Consensus 203 ~~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 203 HWHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred ccceeehhhhHHHHHHHHHHHHHHh
Confidence 7999999999999999999998764
No 18
>PLN00026 aquaporin NIP; Provisional
Probab=99.68 E-value=1.1e-16 Score=137.72 Aligned_cols=100 Identities=27% Similarity=0.294 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~ 117 (204)
.+.++.++.|+++|++|++++++.....+ . .+. ..++++|+.+++.+++.+++||+|+|||+|+++++.++ +|.
T Consensus 184 ~s~~~a~~~Efi~TfiLv~vi~~v~~~~~-~---~~~-~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~-~~~ 257 (298)
T PLN00026 184 VSTGQAFALEFIITFNLLFVVTAVATDTR-A---VGE-LAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG-NYR 257 (298)
T ss_pred ccHHHHHHHHHHHHHHHHHhheeeecCCC-C---cCC-ccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC-Cch
Confidence 46789999999999999999886432111 1 111 25789999999999999999999999999999999987 799
Q ss_pred ccchhhhhchHHHHHHHHHHHHHhcC
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLHP 143 (204)
Q Consensus 118 ~~~~YiiaQ~lGa~~g~~l~~~~~~~ 143 (204)
+.|+||++|++|+++|+++++.+..+
T Consensus 258 ~~wVy~vaPilGAilga~ly~~~~~~ 283 (298)
T PLN00026 258 AIWIYLVAPTLGALAGAGTYTAVKLR 283 (298)
T ss_pred heeHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999998887543
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.68 E-value=1.4e-16 Score=135.87 Aligned_cols=111 Identities=26% Similarity=0.417 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCccc
Q 028768 39 GFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQ 118 (204)
Q Consensus 39 ~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~~ 118 (204)
+.++.++.|+++|+++++.+++.....+ . .+. ..++.+|+.+++.++..+++||+|+|||+|+++++.+ .+|.+
T Consensus 159 ~~~~~~~~E~v~T~iLv~~i~~~~~~~~-~---~~~-~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~-~~~~~ 232 (274)
T PLN00183 159 GCSSAFWVEFIATFIVMFLAASLTSQPQ-S---LGH-LSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS-WDFKD 232 (274)
T ss_pred cHHHHHHHHHHHHHHHHHhhheeecccc-C---CCC-ceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-CChhh
Confidence 4578999999999999999887654221 1 111 2478899999999999999999999999999999987 47999
Q ss_pred cchhhhhchHHHHHHHHHHHHHhcCccc-ccccCCCCC
Q 028768 119 VPIYAAAQLTGAVSASLTLRVLLHPIKH-IGTTSPSGS 155 (204)
Q Consensus 119 ~~~YiiaQ~lGa~~g~~l~~~~~~~~~~-~~~~~p~~s 155 (204)
.|+|+++|++|+++|+++++.++.+... .....|+.|
T Consensus 233 ~wvy~vapilGailaa~l~~~l~~~~~~~~~~~~~~~~ 270 (274)
T PLN00183 233 IWIYITAPTIGAVAGALMFHLLRLRTQPCSPNSSPNTS 270 (274)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCchh
Confidence 9999999999999999999999865432 223445443
No 20
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.65 E-value=4.4e-16 Score=128.72 Aligned_cols=96 Identities=25% Similarity=0.282 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhc-cCCc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVR-HFPW 116 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g-~~~~ 116 (204)
.+.++.++.|+++|+++++.+++....++. .. .....++.+|+.+...++..+++||+|+|||+|+++++.+ ..+|
T Consensus 119 ~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~--~~-~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~ 195 (216)
T TIGR00861 119 VSSGQAFFVEFIGTAILVLVIFATTDPRNR--VP-RGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGW 195 (216)
T ss_pred ccHHHHHHHHHHHHHHHHHHHheeecCCCC--CC-CCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhccccc
Confidence 477899999999999999998876532111 11 1124789999999999999999999999999999999986 4789
Q ss_pred cccchhhhhchHHHHHHHHH
Q 028768 117 KQVPIYAAAQLTGAVSASLT 136 (204)
Q Consensus 117 ~~~~~YiiaQ~lGa~~g~~l 136 (204)
.+.|+|+++|++|+++|+.+
T Consensus 196 ~~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 196 GNHWVYWVGPIIGAILGALV 215 (216)
T ss_pred cceeHHHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 21
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2e-15 Score=126.07 Aligned_cols=102 Identities=32% Similarity=0.380 Sum_probs=88.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCC
Q 028768 36 YPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFP 115 (204)
Q Consensus 36 ~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~ 115 (204)
...+.+|.++.|++.||.+++..++.....+. . ...++.+|+.+.+.++..+++||++||||+|+++++..+.
T Consensus 127 ~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~----~--~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~- 199 (238)
T KOG0223|consen 127 PGLSTGQGLVIEIILTFILVFTVFATATDPRR----S--ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGS- 199 (238)
T ss_pred CCCCcchhHHHHHHHHHHHhheeEEEeecCCC----c--ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcC-
Confidence 44577899999999999999988774431111 1 4679999999999999999999999999999999999884
Q ss_pred ccccchhhhhchHHHHHHHHHHHHHhcCc
Q 028768 116 WKQVPIYAAAQLTGAVSASLTLRVLLHPI 144 (204)
Q Consensus 116 ~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~ 144 (204)
|...|+||++|++|+++++++++.++.+.
T Consensus 200 w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 200 WDDHWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred CCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999988754
No 22
>PLN00184 aquaporin NIP1; Provisional
Probab=99.57 E-value=1.4e-14 Score=124.86 Aligned_cols=100 Identities=26% Similarity=0.316 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~ 117 (204)
.+.++.++.|+++|++|++..++....++ . .+ -..++.+|+.+.+..+..+++||+++|||+++++++... .|.
T Consensus 175 ~s~~~af~~E~i~TfvLv~~il~~~~~~~-~---~~-~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~-~~~ 248 (296)
T PLN00184 175 GSDLQAFVMEFIVTFYLMFIISGVATDNR-A---IG-ELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG-CYK 248 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHheeccCc-C---CC-cchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh-ccc
Confidence 36789999999999999999887643211 1 11 145789999999999999999999999999999999865 578
Q ss_pred ccchhhhhchHHHHHHHHHHHHHhcC
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLHP 143 (204)
Q Consensus 118 ~~~~YiiaQ~lGa~~g~~l~~~~~~~ 143 (204)
+.|+||++|++|+++|+++++.+..+
T Consensus 249 ~~WVy~vgPilGa~laal~y~~l~~~ 274 (296)
T PLN00184 249 GIWIYIVAPTLGAIAGAWVYNTVRYT 274 (296)
T ss_pred ccchHHhHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998888753
No 23
>PLN00166 aquaporin TIP2; Provisional
Probab=99.52 E-value=1.1e-13 Score=116.89 Aligned_cols=101 Identities=32% Similarity=0.385 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~ 117 (204)
.+.++.++.|+++|++|++..++.....+ +. ......++.+|+.+....+..++.||+.+|||+++++++..+ +|.
T Consensus 137 ~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~--~~-~~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~-~~~ 212 (250)
T PLN00166 137 LGAIEGVVMEIVVTFALVYTVYATAADPK--KG-SLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG-DFS 212 (250)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccccc--cc-ccccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC-CCc
Confidence 46789999999999999999887643211 11 111246889999999999999999999999999999999876 689
Q ss_pred ccchhhhhchHHHHHHHHHHHHHhc
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLH 142 (204)
Q Consensus 118 ~~~~YiiaQ~lGa~~g~~l~~~~~~ 142 (204)
+.|+||++|++|+++++++++.++.
T Consensus 213 ~~wvywvgPi~Ga~~aa~~y~~l~~ 237 (250)
T PLN00166 213 QIWIYWVGPLVGGALAGLIYGDVFI 237 (250)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999877764
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.51 E-value=1.3e-13 Score=115.24 Aligned_cols=100 Identities=22% Similarity=0.311 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhcc-CCc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRH-FPW 116 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~-~~~ 116 (204)
.+..+.++.|+++|++|++..++.... + +. . -..++.+|+.+....+..++.||+.+|||+++++++... .++
T Consensus 129 ~~~~~~~~~E~v~T~iLv~~i~~~~~~-~-~~--~--~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~ 202 (231)
T PRK05420 129 YSLLAALVCEVVLTAFFLLVILGATDK-R-AP--A--GFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWAL 202 (231)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCC-C-CC--C--cchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCc
Confidence 367899999999999999998876431 1 11 1 146889999999999999999999999999999999853 344
Q ss_pred cccchhhhhchHHHHHHHHHHHHHhcC
Q 028768 117 KQVPIYAAAQLTGAVSASLTLRVLLHP 143 (204)
Q Consensus 117 ~~~~~YiiaQ~lGa~~g~~l~~~~~~~ 143 (204)
...|+||++|++|+++++++++.++.+
T Consensus 203 ~~~wvy~vgP~~Ga~laa~~y~~l~~~ 229 (231)
T PRK05420 203 EQLWLFWVAPIVGAIIGGLIYRLLLEK 229 (231)
T ss_pred cceEEeehHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999998888754
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.51 E-value=1.2e-13 Score=116.82 Aligned_cols=103 Identities=30% Similarity=0.390 Sum_probs=85.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCc
Q 028768 37 PPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPW 116 (204)
Q Consensus 37 ~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~ 116 (204)
..+.++.++.|+++|++|++..+......+. ... ....++.+|+.+....+..++.||+.+|||+++++++... .|
T Consensus 138 ~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~--~~~-~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~-~~ 213 (252)
T PLN00027 138 GVGVWNAFVFEIVMTFGLVYTVYATAVDPKK--GDL-GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TW 213 (252)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhcccccc--CCc-cchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh-cc
Confidence 3467899999999999999988765432111 111 1256889999999999999999999999999999999876 58
Q ss_pred cccchhhhhchHHHHHHHHHHHHHhcC
Q 028768 117 KQVPIYAAAQLTGAVSASLTLRVLLHP 143 (204)
Q Consensus 117 ~~~~~YiiaQ~lGa~~g~~l~~~~~~~ 143 (204)
.+.|+||++|++|+++|+++++.++.+
T Consensus 214 ~~~wvy~vgP~~Ga~laa~~y~~l~~~ 240 (252)
T PLN00027 214 TNHWVYWAGPLIGGGIAGLVYELIFIG 240 (252)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999998754
No 26
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.48 E-value=2.2e-13 Score=117.48 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhc-----
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVR----- 112 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g----- 112 (204)
.+..+.++.|+++|++|++..++....++. .. .-..++.+|+.+.++.+..++.||+.+|||+++++++..
T Consensus 181 ~s~~~a~~~E~i~T~iLv~~ila~~d~~~~--~~--~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~~g 256 (294)
T PTZ00016 181 EGNFYAIFSELILTAILLLVILAITDPNNC--PA--FNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAILWG 256 (294)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCccC--CC--cCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHhcc
Confidence 567899999999999999988876432111 11 113578899999999999999999999999999999974
Q ss_pred cCCcc----ccchhhhhchHHHHHHHHHHHHHhcC
Q 028768 113 HFPWK----QVPIYAAAQLTGAVSASLTLRVLLHP 143 (204)
Q Consensus 113 ~~~~~----~~~~YiiaQ~lGa~~g~~l~~~~~~~ 143 (204)
+..|. +.|+|+++|++|+++|+++++.+.++
T Consensus 257 ~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~ 291 (294)
T PTZ00016 257 SEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPP 291 (294)
T ss_pred ccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCC
Confidence 22343 58999999999999999999888765
No 27
>PLN00167 aquaporin TIP5; Provisional
Probab=99.45 E-value=4e-13 Score=113.80 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=84.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~ 117 (204)
.+.++.++.|+++|+++++..+.....++ .. .....++.+|+.+....+..++.||+.+|||+++++.+... +|.
T Consensus 141 ~s~~~~~~~E~i~T~~L~~~i~~~~~~~~---~~-~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~-~~~ 215 (256)
T PLN00167 141 MTGFGASVLEGVLTFGLVYTVYAAGDPRR---GL-LGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG-SFK 215 (256)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccc---cC-CCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc-Ccc
Confidence 35578899999999999998876542111 11 11245888999999999999999999999999999999865 588
Q ss_pred ccchhhhhchHHHHHHHHHHHHHhcCc
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLHPI 144 (204)
Q Consensus 118 ~~~~YiiaQ~lGa~~g~~l~~~~~~~~ 144 (204)
..|+||++|++|+++++++++.++.|.
T Consensus 216 ~~wvywvgP~~Ga~l~a~~y~~l~~~~ 242 (256)
T PLN00167 216 NQAVYWVGPLLGGAVAGLLYDNVVFPT 242 (256)
T ss_pred CcEEEeHHHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999888654
No 28
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.41 E-value=1.4e-12 Score=108.18 Aligned_cols=98 Identities=28% Similarity=0.329 Sum_probs=80.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCC
Q 028768 36 YPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFP 115 (204)
Q Consensus 36 ~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~ 115 (204)
...+.++.++.|+++|+++++..+......+... .+. ..++.+|+.+....+..++.||+.+|||+++++.+....
T Consensus 130 ~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~~--~~~-~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~- 205 (227)
T PF00230_consen 130 PGISLGQAFFSEFIGTFILVLVILAVADDKRKFP--LGP-LAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGI- 205 (227)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSST--SSG-GHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH-
T ss_pred ccchhhhhhhhhhhhhhHHHhhhhhhcccccccc--ccc-ccceeEEEEEeecccccccccccccCchhhcCceeeccc-
Confidence 3457899999999999999998877654322221 112 358899999999999999999999999999999998875
Q ss_pred ccccchhhhhchHHHHHHHHHH
Q 028768 116 WKQVPIYAAAQLTGAVSASLTL 137 (204)
Q Consensus 116 ~~~~~~YiiaQ~lGa~~g~~l~ 137 (204)
|.+.|+||++|++|+++|++++
T Consensus 206 ~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 206 WDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp HTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEehHHHHHHHHHhhC
Confidence 9999999999999999999874
No 29
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.36 E-value=4.4e-12 Score=105.93 Aligned_cols=99 Identities=22% Similarity=0.246 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhcc----C
Q 028768 39 GFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRH----F 114 (204)
Q Consensus 39 ~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~----~ 114 (204)
+..+.++.|+++|++|++...+....++. +.-..++.+|+.++.+..+.++.||..+|||+++++++... .
T Consensus 134 ~~~~~fl~E~v~T~~L~~~Ila~~~~~~~-----~~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~ 208 (241)
T COG0580 134 SLGQAFLIEFVGTFVLVLGILALTDDGNA-----NAGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWA 208 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhccCcc-----cccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcc
Confidence 78999999999999999988775531111 11156889999999999999999999999999999999432 1
Q ss_pred C----ccccchhhhhchHHHHHHHHHHHHHhc
Q 028768 115 P----WKQVPIYAAAQLTGAVSASLTLRVLLH 142 (204)
Q Consensus 115 ~----~~~~~~YiiaQ~lGa~~g~~l~~~~~~ 142 (204)
+ ..+.|+|+++|++|+++|+++++.++.
T Consensus 209 ~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 209 ANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred cCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 1 148999999999999999999987653
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=98.72 E-value=1.8e-08 Score=85.97 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=83.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhcc
Q 028768 34 EHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRH 113 (204)
Q Consensus 34 ~~~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~ 113 (204)
...+.++++.++-||+||.+|+.+.+.... ..+ ....-..|+.+|+.++++-.++|..+|-.+|||+++++.+.-.
T Consensus 161 P~p~ls~~n~F~DqfigTa~L~~~l~aI~D---~rN-~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~ 236 (316)
T KOG0224|consen 161 PAPHLSLWNGFFDQFIGTAMLVLCLFAITD---KRN-PIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTS 236 (316)
T ss_pred CchHhhhhHHHHHHHHHHHHHHhheeEEec---CCC-CCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHH
Confidence 344568899999999999999997664332 222 2233356899999999999999999999999999999999821
Q ss_pred --------CC--ccccchhhhhchHHHHHHHHHHHHHhc
Q 028768 114 --------FP--WKQVPIYAAAQLTGAVSASLTLRVLLH 142 (204)
Q Consensus 114 --------~~--~~~~~~YiiaQ~lGa~~g~~l~~~~~~ 142 (204)
++ -...|+.++++++|+++|++++.....
T Consensus 237 ~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig 275 (316)
T KOG0224|consen 237 IAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIG 275 (316)
T ss_pred HHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeee
Confidence 11 145788999999999999999887775
No 31
>PRK09713 focB putative formate transporter; Provisional
Probab=81.69 E-value=34 Score=29.57 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=57.7
Q ss_pred chhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCccccch----hhhhchHHHHHHHHHHHHHhc--Cccc
Q 028768 73 SKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPI----YAAAQLTGAVSASLTLRVLLH--PIKH 146 (204)
Q Consensus 73 ~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~~~~~----YiiaQ~lGa~~g~~l~~~~~~--~~~~ 146 (204)
..+..++.+.+++..+++.-+..--++. . ++.....|+.+|++.+- -+++-++|+++.+.+.+.--. +...
T Consensus 66 ~~ll~g~~F~vGLilIv~~g~ELfTgN~--~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~ 142 (282)
T PRK09713 66 THLVGGLCFTLGFILLAVCGTSLFTSSV--M-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENA 142 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccHHHH--H-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccch
Confidence 3455566677777777766555433332 1 22335678888877663 345666666666655433111 1011
Q ss_pred -cc-------ccCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 028768 147 -IG-------TTSPSGSDLQALIMEIVVTFSMMFVTSAV 177 (204)
Q Consensus 147 -~~-------~~~p~~s~~~~~~~E~~~T~~L~~~i~~~ 177 (204)
.+ ...-+.+..+.|+--+++-++..+.++..
T Consensus 143 ~~~~~~~~ia~~K~~~~~~~~F~~gI~CN~lVclaV~~~ 181 (282)
T PRK09713 143 MWGVAVLHCAEGKMHHTFTESVSLGIMCNLMVCLALWMS 181 (282)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01113466788888899999888888754
No 32
>PRK10805 formate transporter; Provisional
Probab=79.99 E-value=39 Score=29.21 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=57.6
Q ss_pred chhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCccccchh----hhhchHHHHHHHHHHHHHhc---Ccc
Q 028768 73 SKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIY----AAAQLTGAVSASLTLRVLLH---PIK 145 (204)
Q Consensus 73 ~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~~~~~Y----iiaQ~lGa~~g~~l~~~~~~---~~~ 145 (204)
..+..++.+.+++..+++.-+..-=+ |-..+++ .+.||.+|.+..-. .++-++|+++-+.+.+..-. +..
T Consensus 67 ~~ll~~~~F~vGlilIvl~g~eLFTg--n~l~~~~-~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~~~~ 143 (285)
T PRK10805 67 AKLVGGICFSLGLILCVVCGADLFTS--TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANG 143 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccchh--hHHHHHH-HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCcc
Confidence 34555667777777777665554323 5555543 67788888776633 35555566555554432210 001
Q ss_pred ccc-------ccCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 028768 146 HIG-------TTSPSGSDLQALIMEIVVTFSMMFVTSAV 177 (204)
Q Consensus 146 ~~~-------~~~p~~s~~~~~~~E~~~T~~L~~~i~~~ 177 (204)
..+ ...-+.+..+.|+-=+++.++..+.+...
T Consensus 144 ~~~~~~~~~a~~K~~~~~~~~f~~gI~CN~lVclaV~~~ 182 (285)
T PRK10805 144 QWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 01112356778888888888888887743
No 33
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=76.97 E-value=30 Score=29.18 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=61.7
Q ss_pred CccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCccccchhhhhchHHHHHHHHHHHHHhc----Cc-
Q 028768 70 HRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH----PI- 144 (204)
Q Consensus 70 ~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~----~~- 144 (204)
++...+..++.+++++..+++.-+..-- =|-.......+.|+.+|.+.+--|.-=.+|=++|+.+.-.+.. ..
T Consensus 53 ~g~~~l~~g~~F~~Gl~lIv~~g~eLfT--gn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~ 130 (250)
T PF01226_consen 53 PGLAKLVGGLVFPIGLVLIVFLGGELFT--GNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMS 130 (250)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHT---TT--TTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGT
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcchhcc--cchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 3444566677777777777776554422 2555555677788888887665555445555555554433332 11
Q ss_pred -cccc-------ccCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 028768 145 -KHIG-------TTSPSGSDLQALIMEIVVTFSMMFVTSAV 177 (204)
Q Consensus 145 -~~~~-------~~~p~~s~~~~~~~E~~~T~~L~~~i~~~ 177 (204)
.... ...-+.+.++.|+-=+++.++..+.++..
T Consensus 131 ~~~~~~~~~~~a~~K~~~~~~~~f~~gI~cN~lVclav~~~ 171 (250)
T PF01226_consen 131 SPAMGEYLISVAEHKVSHTFWELFFRGILCNWLVCLAVWLA 171 (250)
T ss_dssp TTHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 01113466788888899999988888865
No 34
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=72.55 E-value=61 Score=27.78 Aligned_cols=137 Identities=13% Similarity=0.111 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCcc
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 38 ~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~ 117 (204)
+.+++..++=++-++-+++....... ....+.+...+..++.+++++...++.-+..--+ |--........++++|+
T Consensus 29 ~~~l~ai~AG~~i~lg~~~~~~~~~~-~~~~~~~~~~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~ 105 (265)
T COG2116 29 KLLLLAILAGAFIGLGFLFYITVGTG-LPGAPGGLAKLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWG 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-CCCCCcchHHHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHH
Confidence 34555555554444444433221111 1122223355667777788877777765544222 32333345566888888
Q ss_pred ccchhhhhchHHHHHHHHHHHHHhc-Cc------cccc-----cc--CCCCChHHHHHHHHHHHHHHHHHHHHh
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLH-PI------KHIG-----TT--SPSGSDLQALIMEIVVTFSMMFVTSAV 177 (204)
Q Consensus 118 ~~~~YiiaQ~lGa~~g~~l~~~~~~-~~------~~~~-----~~--~p~~s~~~~~~~E~~~T~~L~~~i~~~ 177 (204)
+.+--|.-=.+|=++|++++-+++. +. +..+ .- .-+.+..+.|.-=+++.++..+.+...
T Consensus 106 ~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~ 179 (265)
T COG2116 106 QLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMS 179 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665555555555555554444331 11 1111 00 012245677777788887777777654
No 35
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=61.10 E-value=84 Score=27.09 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=26.8
Q ss_pred ccc-chHHHHHHHHhcc-----CCcc------ccchhhhhchHHHHHHHHHHHHHh
Q 028768 98 AHM-NPAVTLAFAAVRH-----FPWK------QVPIYAAAQLTGAVSASLTLRVLL 141 (204)
Q Consensus 98 ~hl-NPAvTla~~l~g~-----~~~~------~~~~YiiaQ~lGa~~g~~l~~~~~ 141 (204)
-+. ||+..+.+++..+ ++.. ....-++.|-+-+.++....-...
T Consensus 109 ~~~~sp~l~~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~l 164 (274)
T PF12811_consen 109 RKVWSPALAPIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLAL 164 (274)
T ss_pred CccCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 466 8999988888643 3321 122448888777776665544433
No 36
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=55.53 E-value=4.1 Score=30.12 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.7
Q ss_pred ccCcCcccchHHHHHHHHhcc
Q 028768 93 GHISGAHMNPAVTLAFAAVRH 113 (204)
Q Consensus 93 g~iSG~hlNPAvTla~~l~g~ 113 (204)
+.-|+||+||.+.++-.+.++
T Consensus 5 ~~Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 5 TGGTRGHVYPFLALARALRRR 25 (139)
T ss_dssp EESSHHHHHHHHHHHHHHHHT
T ss_pred EcCChhHHHHHHHHHHHHhcc
Confidence 334789999999999999865
No 37
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=46.52 E-value=4.7 Score=35.51 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.1
Q ss_pred hccCcCcccchHHHHHHHHhc
Q 028768 92 VGHISGAHMNPAVTLAFAAVR 112 (204)
Q Consensus 92 ~g~iSG~hlNPAvTla~~l~g 112 (204)
.+.-+|||+.||++++-.+..
T Consensus 7 ~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 7 TGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EcCCcHHHHHHHHHHHHHHHh
Confidence 456689999999999999875
No 38
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=39.24 E-value=24 Score=22.60 Aligned_cols=28 Identities=4% Similarity=0.107 Sum_probs=20.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 028768 34 EHYPPGFLRKVIAEIIATYLLVFVTCGS 61 (204)
Q Consensus 34 ~~~~~~~~~~~~~Ef~gT~~lv~~~~g~ 61 (204)
+..+.++++.++-+|.-.++++.++++.
T Consensus 30 ~~~~~s~~~~~l~~~~~p~~~iL~~~a~ 57 (64)
T smart00831 30 PPKKRSPLLRFLRQFHNPLIYILLAAAV 57 (64)
T ss_pred CCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344678888888888888887766543
No 39
>PRK11562 nitrite transporter NirC; Provisional
Probab=36.91 E-value=2.7e+02 Score=23.82 Aligned_cols=103 Identities=11% Similarity=0.107 Sum_probs=54.2
Q ss_pred chhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCCccccchhhhhchHHHHHHHHHHHHHhc-------Cc-
Q 028768 73 SKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH-------PI- 144 (204)
Q Consensus 73 ~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~-------~~- 144 (204)
..+..++.+++++...++.-+..--+ |=.......+.|+.+|.+.+-.|.-=++|=++|+++.-.+.. +.
T Consensus 57 ~~li~g~~F~~GLilVi~~G~eLFTg--n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~ 134 (268)
T PRK11562 57 RPLVMGATFGIALTLVIIAGSELFTG--HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVD 134 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 33445566666666666654443212 333333556778888776655554444444444444333221 10
Q ss_pred ccc----cccCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 028768 145 KHI----GTTSPSGSDLQALIMEIVVTFSMMFVTSAV 177 (204)
Q Consensus 145 ~~~----~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~ 177 (204)
... ....-+.+..+.|+-=+++.++..+.+...
T Consensus 135 ~~~~~~ia~~K~~~~~~~~f~~gI~CNwLVclavw~~ 171 (268)
T PRK11562 135 TSIVHSVALAKTTAPAMVLFFKGALCNWLVCLAIWMA 171 (268)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000112356678888888888888877654
No 40
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=29.02 E-value=4.7e+02 Score=24.61 Aligned_cols=46 Identities=26% Similarity=0.230 Sum_probs=32.7
Q ss_pred chHHHHHHHHhccCCccccchhhhhchHHHHHHHHHHHHHhcCccc
Q 028768 101 NPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH 146 (204)
Q Consensus 101 NPAvTla~~l~g~~~~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~~~ 146 (204)
..+|..+..-...-|.....-++.+.++|+.+|....+.+.+..+.
T Consensus 371 ~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~ 416 (650)
T PF04632_consen 371 MAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLDG 416 (650)
T ss_pred HHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 3334443334444567788889999999999999998888875543
No 41
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=28.06 E-value=1.5e+02 Score=25.93 Aligned_cols=19 Identities=0% Similarity=0.312 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 028768 45 IAEIIATYLLVFVTCGSAA 63 (204)
Q Consensus 45 ~~Ef~gT~~lv~~~~g~~~ 63 (204)
++.=+.++++.++++..+.
T Consensus 270 la~Pl~~l~l~llavpl~~ 288 (366)
T PRK15120 270 LTLVFSVFIMALMVVPLSV 288 (366)
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 6778888888888765544
No 42
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=23.04 E-value=3.2e+02 Score=20.25 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028768 40 FLRKVIAEIIATYLLVFVTCGSAA 63 (204)
Q Consensus 40 ~~~~~~~Ef~gT~~lv~~~~g~~~ 63 (204)
-.+.++.=|+.+.+|..+..+.+.
T Consensus 24 ~~k~yviGFiLSiiLT~I~F~~V~ 47 (110)
T TIGR02908 24 EMKKQIVTFALMIFLTLIAFFAVM 47 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778888888887776665
No 43
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=22.64 E-value=1.9e+02 Score=25.17 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCc-CcccchHH
Q 028768 46 AEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHIS-GAHMNPAV 104 (204)
Q Consensus 46 ~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iS-G~hlNPAv 104 (204)
+-=+.+..+++++...+.......+....+..++.+|+........+...+ .++++|.+
T Consensus 276 a~Pl~~~~~~lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~l 335 (356)
T PRK15071 276 FQPLSVAVMMLMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSLVYGIPPII 335 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 334556666666654433222221112223445555555555544444432 46777754
No 44
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=21.12 E-value=3.5e+02 Score=24.38 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=28.3
Q ss_pred CCCCCCCcccccccccCCCCCCcchhhccccCCCchHHHHHHHHHHHHHHHHHHH
Q 028768 4 MDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVT 58 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ef~gT~~lv~~~ 58 (204)
.++++|+.-+=.-++++++.++.......++..+++-.+....=++|....++.+
T Consensus 187 ~GkeL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~gv~~VV~~g 241 (364)
T PF03605_consen 187 RGKELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLGVVAVVLYG 241 (364)
T ss_pred cCCccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHHHHHHHHHH
Confidence 4667764433346777776665544433223344444444444445554444444
No 45
>PF06592 DUF1138: Protein of unknown function (DUF1138); InterPro: IPR009515 This family consists of several hypothetical short plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=21.07 E-value=1e+02 Score=21.03 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=22.8
Q ss_pred hhhhchHHHHHHHHHHHHHhcCcccccccCCC
Q 028768 122 YAAAQLTGAVSASLTLRVLLHPIKHIGTTSPS 153 (204)
Q Consensus 122 YiiaQ~lGa~~g~~l~~~~~~~~~~~~~~~p~ 153 (204)
||++-++|++..+............+|-+.|.
T Consensus 3 yIi~al~gsfa~ay~c~~~vs~~K~FGGt~p~ 34 (73)
T PF06592_consen 3 YIIGALAGSFAVAYVCDQYVSDKKIFGGTTPH 34 (73)
T ss_pred EEeehHHHHHHHHHHHHHHHhcccccCCCCCC
Confidence 78888888888777666566566677766664
No 46
>PF10767 DUF2593: Protein of unknown function (DUF2593); InterPro: IPR019703 This entry represents proteins that appear to be restricted to Enterobacteriaceae. Some members are annotated as YbjO, however there is currently no known function.
Probab=21.02 E-value=48 Score=25.61 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=16.7
Q ss_pred HHHHhccCCccccchhhhhchH
Q 028768 107 AFAAVRHFPWKQVPIYAAAQLT 128 (204)
Q Consensus 107 a~~l~g~~~~~~~~~YiiaQ~l 128 (204)
++++.++.+|.| |.|..+|++
T Consensus 65 gfav~~g~nwgR-W~yl~~Q~~ 85 (144)
T PF10767_consen 65 GFAVMRGRNWGR-WGYLACQIL 85 (144)
T ss_pred HHHHhccCcchh-HHHHHHHHH
Confidence 556667768987 999999975
Done!