Query 028768
Match_columns 204
No_of_seqs 135 out of 1529
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:12:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028768.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2262-2266//hhsearch_pdb/028768hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 1.0 1 1 230.8 13.5 179 25-204 45-237 (304)
2 3iyz_A Aquaporin-4; water tran 1.0 1 1 230.6 16.4 186 19-204 28-222 (340)
3 2w2e_A AQY1, aquaporin, aquapo 1.0 1 1 224.6 17.2 166 38-204 42-216 (279)
4 3llq_A Aquaporin Z 2; aquapori 1.0 1 1 224.6 16.7 168 36-204 25-204 (256)
5 2zz9_A Aquaporin-4; water tran 1.0 1 1 220.5 18.0 172 32-203 4-182 (301)
6 1j4n_A Aquaporin 1; membrane p 1.0 1 1 220.3 15.4 170 33-203 3-185 (271)
7 1ldf_A Glycerol uptake facilit 1.0 1 1 218.7 15.1 168 37-204 4-195 (281)
8 2o9g_A Aquaporin Z; integral m 1.0 1 1 217.6 16.7 165 39-204 3-181 (234)
9 3d9s_A Aquaporin-5, AQP-5; aqu 1.0 1 1 216.9 14.9 169 33-204 4-178 (266)
10 2f2b_A Aquaporin AQPM; protein 1.0 1 1 215.7 17.7 166 39-204 3-191 (246)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=1.00 E-value=1 Score=230.81 Aligned_cols=179 Identities=27% Similarity=0.333 Sum_probs=146.3
Q ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 940111023579933799999999999999999888743345---66676431467889999999999984267676556
Q 028768 25 KPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSA---YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMN 101 (204)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~E~igT~~lvf~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlN 101 (204)
|++...+.++..+.+++|++++||+||++|+|+++++..... ++....+++.+++++|+.+++.+|+++++||+|+|
T Consensus 45 ~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlN 124 (304)
T 3cn5_A 45 PPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 124 (304)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEHHHHHHHHHEEEEEEECCCCCCCC
T ss_conf 86101585311248899999999999999999976777573134577888772331123353342002576236777358
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCC---CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 387899998413776634301001017899999999897537663---0002--79988378789999999999999988
Q 028768 102 PAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH---IGTT--SPSGSDLQALIMEIVVTFSMMFVTSA 176 (204)
Q Consensus 102 PAvTla~~l~g~~~~~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~~~---~~~~--~p~~s~~~~~~~E~~~T~~l~~~i~~ 176 (204)
||||++.++.|+++|.+.+.|+++|++|+++|+.+.+.++++... .+.+ .+..+..++|+.|+++||+|+++|+.
T Consensus 125 PAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~ 204 (304)
T 3cn5_A 125 PAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 204 (304)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 18889999807898999999999999999999999999821045432676345688765788999999999999988763
Q ss_pred HCCCCCC-C-CC----CHHHHHHHHHHHHHHHCC
Q ss_conf 5137776-6-86----017899999999996439
Q 028768 177 VATDTKA-I-GE----LAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 177 ~~~~~~~-~-~~----~~p~~iG~~v~~~~~~~g 204 (204)
. .|+++ . +. +.|+.||++|.+.++.+|
T Consensus 205 ~-~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g 237 (304)
T 3cn5_A 205 A-TDPKRSARDSHVPILAPLPIGFAVFMVHLATI 237 (304)
T ss_dssp T-EEEEEESTTSCCEEECHHHHHHHHHHHHHHHH
T ss_pred E-ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 0-05766777766664168999999999998554
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=230.62 Aligned_cols=186 Identities=25% Similarity=0.404 Sum_probs=151.1
Q ss_pred CCCCCCCCCHHH--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 699999940111--023579933799999999999999999888743345--6667643146788999999999998426
Q 028768 19 QSPPSEKPKLCL--VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSA--YDEHRVSKLGASVAGGLIVTVMIYAVGH 94 (204)
Q Consensus 19 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~E~igT~~lvf~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~i~~~~~ 94 (204)
.+|++.|++..- ..++.++.+++|.+++||+||++|+|+++|+.+... ......+++.+++++|+++++.+|++++
T Consensus 28 ~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ 107 (340)
T 3iyz_A 28 DDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGH 107 (340)
T ss_pred CCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEC
T ss_conf 89877985004546542102199999999999999999999999997155677888753499999999999886057011
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCC--CCCCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 767655638789999841377663430100101789999999989753766--30002--79988378789999999999
Q 028768 95 ISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIK--HIGTT--SPSGSDLQALIMEIVVTFSM 170 (204)
Q Consensus 95 ~SGahlNPAvTla~~l~g~~~~~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~~--~~~~~--~p~~s~~~~~~~E~~~T~~l 170 (204)
+||+|+|||||+++++.|+++|.+.+.|+++|++||++|+.+.+.++++.. .++.+ .+..+..++|+.|+++||+|
T Consensus 108 ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~L 187 (340)
T 3iyz_A 108 ISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQL 187 (340)
T ss_pred CCCCEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 57570581979999985999799979999999989999989999725121147501115898657899999999999999
Q ss_pred HHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999885137776-686017899999999996439
Q 028768 171 MFVTSAVATDTKA-IGELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 171 ~~~i~~~~~~~~~-~~~~~p~~iG~~v~~~~~~~g 204 (204)
+++++++..+++. .....|+.||++|.+++++++
T Consensus 188 v~~Ila~~d~~~~~~~~~~pl~IGl~v~i~~~~g~ 222 (340)
T 3iyz_A 188 VFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAI 222 (340)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999862576677555411699999999999656
No 3
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=1.00 E-value=1 Score=224.57 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHC-CC------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 337999999999999999998887433-45------66676431467889999999999984267676556387899998
Q 028768 38 PGFLRKVIAEIIATYLLVFVTCGSAAL-SA------YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAA 110 (204)
Q Consensus 38 ~~~~~~~~~E~igT~~lvf~~~~~~~~-~~------~~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlNPAvTla~~l 110 (204)
++.+|.+++||+||++|+|+++++... +. ......+++.+++++|+.+++.+|+++++||+|+|||||++.++
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~ 121 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVL 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999999999999999999999951223345567877437999999999999999998604766508199999998
Q ss_pred HCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 413776634301001017899999999897537663000279--988378789999999999999988513777668601
Q 028768 111 VRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSP--SGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELA 188 (204)
Q Consensus 111 ~g~~~~~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~~~~~~~~p--~~s~~~~~~~E~~~T~~l~~~i~~~~~~~~~~~~~~ 188 (204)
.|+++|.+.+.|+++|++|+++|+.+.+.+++... ...+.| ..+..++|+.|+++||+|+++++.++.++++.+.+.
T Consensus 122 ~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~-~~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~~~~~~ 200 (279)
T 2w2e_A 122 ARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI-AFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFA 200 (279)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCSTTGGGH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 37998999999999999999999999999826641-34115886533788999999999999999998705788776729
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 7899999999996439
Q 028768 189 GIAVGSAVCITSVLAG 204 (204)
Q Consensus 189 p~~iG~~v~~~~~~~g 204 (204)
|+.||++|.+.++.+|
T Consensus 201 pl~IGl~v~~~~l~~g 216 (279)
T 2w2e_A 201 PFVIGIALLIAHLICI 216 (279)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998621
No 4
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=1.00 E-value=1 Score=224.57 Aligned_cols=168 Identities=35% Similarity=0.479 Sum_probs=143.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99337999999999999999998887433456-66764314678899999999999842676765563878999984137
Q 028768 36 YPPGFLRKVIAEIIATYLLVFVTCGSAALSAY-DEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHF 114 (204)
Q Consensus 36 ~~~~~~~~~~~E~igT~~lvf~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlNPAvTla~~l~g~~ 114 (204)
.+++++|++++||+||++|+++++++...... .....+++.+++++|+++++.+|+++++||+|+|||||+++++.|++
T Consensus 25 ~~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 104 (256)
T 3llq_A 25 QSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRF 104 (256)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCEECHHHHHHHHHHCCC
T ss_conf 19999999999999999999999999987134888774379999999999999980430666065756999999996689
Q ss_pred CCCCCCHHHHHCHHHHHHHHHHHHHHHCCCC----------CCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7663430100101789999999989753766----------30002799-883787899999999999999885137776
Q 028768 115 PWKQVPIYAAAQLTGAVSASLTLRVLLHPIK----------HIGTTSPS-GSDLQALIMEIVVTFSMMFVTSAVATDTKA 183 (204)
Q Consensus 115 ~~~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~~----------~~~~~~p~-~s~~~~~~~E~~~T~~l~~~i~~~~~~~~~ 183 (204)
+|.+.+.|+++|++|+++|+.+.+.+++... ..+++.|. .+..++|+.|+++|++|+++++++ .|+|.
T Consensus 105 ~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~-~d~~~ 183 (256)
T 3llq_A 105 PASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGS-THGRV 183 (256)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-HSTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf 89999999999999999999999998077622233566545402468764578999999999999999999996-37777
Q ss_pred CCCCHHHHHHHHHHHHHHHCC
Q ss_conf 686017899999999996439
Q 028768 184 IGELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 184 ~~~~~p~~iG~~v~~~~~~~g 204 (204)
.+.+.|+.||++|.+..+.+|
T Consensus 184 ~~~~~pl~IGl~v~~i~~~~g 204 (256)
T 3llq_A 184 PAGFAPIAIGLALTLIHLISI 204 (256)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHC
T ss_conf 765150999999999999951
No 5
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=1.00 E-value=1 Score=220.48 Aligned_cols=172 Identities=27% Similarity=0.438 Sum_probs=144.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 235799337999999999999999998887433456--667643146788999999999998426767655638789999
Q 028768 32 WNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAY--DEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFA 109 (204)
Q Consensus 32 ~~~~~~~~~~~~~~~E~igT~~lvf~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlNPAvTla~~ 109 (204)
.++..+.+++|.+++||+||++|+|+++++.+.... .....+++.+++++|+++++.+++++++||+|+|||||++.+
T Consensus 4 ~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 83 (301)
T 2zz9_A 4 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 83 (301)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECHHHHHHHH
T ss_conf 10125688999999999999999999999993035577888742599999999999876312235776534719999999
Q ss_pred HHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCC--CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-C
Q ss_conf 8413776634301001017899999999897537663--00027--99883787899999999999999885137776-6
Q 028768 110 AVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH--IGTTS--PSGSDLQALIMEIVVTFSMMFVTSAVATDTKA-I 184 (204)
Q Consensus 110 l~g~~~~~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~~~--~~~~~--p~~s~~~~~~~E~~~T~~l~~~i~~~~~~~~~-~ 184 (204)
+.|+++|.+.+.|+++|++|+++|+.+.+.++++... ++.+. +..+..++|+.|+++||+|+++++++.++++. .
T Consensus 84 ~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~~ 163 (301)
T 2zz9_A 84 CTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDV 163 (301)
T ss_dssp HTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSCC
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95589899999999999999999999999744500047446404875421478999999999999999998607778876
Q ss_pred CCCHHHHHHHHHHHHHHHC
Q ss_conf 8601789999999999643
Q 028768 185 GELAGIAVGSAVCITSVLA 203 (204)
Q Consensus 185 ~~~~p~~iG~~v~~~~~~~ 203 (204)
..+.|+.||++|.++++.+
T Consensus 164 ~~~~pl~IGl~v~i~~~~g 182 (301)
T 2zz9_A 164 TGSVALAIGFSVAIGHLFA 182 (301)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 5327699999999999984
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=1.00 E-value=1 Score=220.32 Aligned_cols=170 Identities=31% Similarity=0.432 Sum_probs=140.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 3579933799999999999999999888743345-------666764314678899999999999842676765563878
Q 028768 33 NEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSA-------YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVT 105 (204)
Q Consensus 33 ~~~~~~~~~~~~~~E~igT~~lvf~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlNPAvT 105 (204)
+|..+++++|++++||+||++|+|+++++..... ......+++.+++++|+.+.+.+|+++++||+|+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHH
T ss_conf 10115789999999999999999999999986301244566667554339999999999999999971677365758999
Q ss_pred HHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCC--CCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999984137766343010010178999999998975376--6300--027998837878999999999999998851377
Q 028768 106 LAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI--KHIG--TTSPSGSDLQALIMEIVVTFSMMFVTSAVATDT 181 (204)
Q Consensus 106 la~~l~g~~~~~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~--~~~~--~~~p~~s~~~~~~~E~~~T~~l~~~i~~~~~~~ 181 (204)
++.++.|+++|.+.+.|+++|++|+++|+.+.+.++++. ..++ ++.|..+..++++.|+++|++|++++++.. |+
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~-d~ 161 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DR 161 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHT-CS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf 99999289989999999999999999999999998157864331345578764358899999999999999987504-66
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHC
Q ss_conf 76--68601789999999999643
Q 028768 182 KA--IGELAGIAVGSAVCITSVLA 203 (204)
Q Consensus 182 ~~--~~~~~p~~iG~~v~~~~~~~ 203 (204)
|+ .+.+.|+.||++|.++++.+
T Consensus 162 ~~~~~~~~~pl~IGl~v~~~~~~~ 185 (271)
T 1j4n_A 162 RRRDLGGSGPLAIGFSVALGHLLA 185 (271)
T ss_dssp SCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 677766528799999999999842
No 7
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=1.00 E-value=1 Score=218.72 Aligned_cols=168 Identities=29% Similarity=0.354 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 93379999999999999999988874334566676431467889999999999984267676556387899998413776
Q 028768 37 PPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPW 116 (204)
Q Consensus 37 ~~~~~~~~~~E~igT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlNPAvTla~~l~g~~~~ 116 (204)
+.+++|++++||+||++|+|+++++.+.....+...+.+.+++++|+.+.+.+|+++++||+|+|||||++.++.|+++|
T Consensus 4 ~~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 83 (281)
T 1ldf_A 4 TSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK 83 (281)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECHHHHHHHHHCCCCCH
T ss_conf 57899999999999999999999999876506887760799999999998774233045767417398999999079989
Q ss_pred CCCCHHHHHCHHHHHHHHHHHHHHHCCCC--------------------CCCCCCCC--CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 63430100101789999999989753766--------------------30002799--883787899999999999999
Q 028768 117 KQVPIYAAAQLTGAVSASLTLRVLLHPIK--------------------HIGTTSPS--GSDLQALIMEIVVTFSMMFVT 174 (204)
Q Consensus 117 ~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~~--------------------~~~~~~p~--~s~~~~~~~E~~~T~~l~~~i 174 (204)
.+.+.|+++|++|+++|+.+.+.++++.. ..+++.|. .+..++|+.|+++||+|++++
T Consensus 84 ~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~i 163 (281)
T 1ldf_A 84 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI 163 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999841266530553111256532111013110468865558999999999999999999
Q ss_pred HHHCCCCCCC--CCCHHHHHHHHHHHHHHHCC
Q ss_conf 8851377766--86017899999999996439
Q 028768 175 SAVATDTKAI--GELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 175 ~~~~~~~~~~--~~~~p~~iG~~v~~~~~~~g 204 (204)
+++.++++.. +.+.|+.||++|.+.++..|
T Consensus 164 l~~~d~~~~~~~~~~~pl~IGl~v~~~~~~~g 195 (281)
T 1ldf_A 164 LALTDDGNGVPRGPLAPLLIGLLIAVIGASMG 195 (281)
T ss_dssp HHHHCTTSSSCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99725678875532288999999999997602
No 8
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=1.00 E-value=1 Score=217.58 Aligned_cols=165 Identities=38% Similarity=0.495 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 37999999999999999998887433456-66764314678899999999999842676765563878999984137766
Q 028768 39 GFLRKVIAEIIATYLLVFVTCGSAALSAY-DEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWK 117 (204)
Q Consensus 39 ~~~~~~~~E~igT~~lvf~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlNPAvTla~~l~g~~~~~ 117 (204)
+++|++++||+||++|+|.++++...++. .+...+++.+++++|+.+.+.+|+++++||+|+|||||++.++.|+++|.
T Consensus 3 ~l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 82 (234)
T 2o9g_A 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAK 82 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHCCCCHH
T ss_conf 77999999999999999999989970667888886769999999999999999961667342278999999993799899
Q ss_pred CCCHHHHHCHHHHHHHHHHHHHHHCCCC------------CCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 3430100101789999999989753766------------30002799-8837878999999999999998851377766
Q 028768 118 QVPIYAAAQLTGAVSASLTLRVLLHPIK------------HIGTTSPS-GSDLQALIMEIVVTFSMMFVTSAVATDTKAI 184 (204)
Q Consensus 118 ~~~~yiiaQ~~Ga~~g~~l~~~~~~~~~------------~~~~~~p~-~s~~~~~~~E~~~T~~l~~~i~~~~~~~~~~ 184 (204)
+.+.|+++|++|+++|+.+.+.++++.. ..+++.|. .+..++|+.|+++|++|+++++.+ .|+|..
T Consensus 83 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~-~d~~~~ 161 (234)
T 2o9g_A 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-TSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCC
T ss_conf 9999999999999999999999926764311125654432044137874443889999999999999999986-078876
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 86017899999999996439
Q 028768 185 GELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 185 ~~~~p~~iG~~v~~~~~~~g 204 (204)
+.+.|+.||+++.+.++.+|
T Consensus 162 ~~~~pl~IGl~v~~~~~~~g 181 (234)
T 2o9g_A 162 AGFAPIAIGLACTLIHLISI 181 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCC
T ss_conf 31099999999999999715
No 9
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=216.91 Aligned_cols=169 Identities=27% Similarity=0.370 Sum_probs=142.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 35799337999999999999999998887433456667643146788999999999998426767655638789999841
Q 028768 33 NEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVR 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~E~igT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlNPAvTla~~l~g 112 (204)
+|..+.+++|.+++||+||++|+|+++++...... ...+++.+++++|+.+.+.+++++++||+|+|||||+++++.|
T Consensus 4 ~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~~--~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g 81 (266)
T 3d9s_A 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPS--ALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGN 81 (266)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS--SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTS
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHC
T ss_conf 56307589999999999999999999999737888--8741899999999999999999724675248779999999954
Q ss_pred CCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCC--CCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCC
Q ss_conf 37766343010010178999999998975376--63000279--9883787899999999999999885137776--686
Q 028768 113 HFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI--KHIGTTSP--SGSDLQALIMEIVVTFSMMFVTSAVATDTKA--IGE 186 (204)
Q Consensus 113 ~~~~~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~--~~~~~~~p--~~s~~~~~~~E~~~T~~l~~~i~~~~~~~~~--~~~ 186 (204)
+++|.+.+.|+++|++|+++|+.+.+.++++. ...+.+.| ..+..++|+.|+++||+|+++++++. |+++ ...
T Consensus 82 ~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~-d~~~~~~~~ 160 (266)
T 3d9s_A 82 QISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFAST-DSRRTSPVG 160 (266)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHH-CTTCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCC
T ss_conf 8979999999999998999999999987240235741211687542478889999999999999999983-666787644
Q ss_pred CHHHHHHHHHHHHHHHCC
Q ss_conf 017899999999996439
Q 028768 187 LAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 187 ~~p~~iG~~v~~~~~~~g 204 (204)
+.|+.||+++.++++++|
T Consensus 161 ~~pl~IGl~v~~~~~~~g 178 (266)
T 3d9s_A 161 SPALSIGLSVTLGHLVGI 178 (266)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 288999999999999831
No 10
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=1.00 E-value=1 Score=215.70 Aligned_cols=166 Identities=35% Similarity=0.477 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC----CC--------C-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 3799999999999999999888743345----66--------6-----76431467889999999999984267676556
Q 028768 39 GFLRKVIAEIIATYLLVFVTCGSAALSA----YD--------E-----HRVSKLGASVAGGLIVTVMIYAVGHISGAHMN 101 (204)
Q Consensus 39 ~~~~~~~~E~igT~~lvf~~~~~~~~~~----~~--------~-----~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlN 101 (204)
+++|++++||+||++|+|.++++..... .+ . ...+++.+++++|+.+.+.+|+++++||+|+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCEEC
T ss_conf 68999999999999999999999982434057765554445553324666632589999999999775233146633237
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCC----CCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3878999984137766343010010178999999998975376----63000279--98837878999999999999998
Q 028768 102 PAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPI----KHIGTTSP--SGSDLQALIMEIVVTFSMMFVTS 175 (204)
Q Consensus 102 PAvTla~~l~g~~~~~~~~~yiiaQ~~Ga~~g~~l~~~~~~~~----~~~~~~~p--~~s~~~~~~~E~~~T~~l~~~i~ 175 (204)
||||++.++.|+++|.+.+.|+++|++|+++|+.+.+.+++++ ...+++.| ..+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEE
T ss_conf 99999999918999999999999999999999999999828640012314413686331268999999999999985236
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 85137776686017899999999996439
Q 028768 176 AVATDTKAIGELAGIAVGSAVCITSVLAG 204 (204)
Q Consensus 176 ~~~~~~~~~~~~~p~~iG~~v~~~~~~~g 204 (204)
+.+.|++......|+.||+++.+.++..|
T Consensus 163 ~~~~~~~~~~~~~pl~iGl~v~~~~~~~g 191 (246)
T 2f2b_A 163 GIAVDERAPKGFAGIIIGLTVAGIITTLG 191 (246)
T ss_dssp HHTTSTTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCEEEHHHHHHHHHHHHCCC
T ss_conf 77527898775511889999999986050
Done!