BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028769
         (204 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GLZ|A Chain A, Crystal Structure Of A Formylmethanofuran Dehydrogenase
           Subunit E-Like Protein (Dhaf_2992) From
           Desulfitobacterium Hafniense Dcb-2 At 1.45 A Resolution
 pdb|2GLZ|B Chain B, Crystal Structure Of A Formylmethanofuran Dehydrogenase
           Subunit E-Like Protein (Dhaf_2992) From
           Desulfitobacterium Hafniense Dcb-2 At 1.45 A Resolution
          Length = 153

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 82  DFHHCFSMPSNASGAGVTQLEGRLSGISVIIGRQGESCDSVCKSSGQSCVLNKLILLNQC 141
           DFH   + P  A G  + QL  R  GI     R     + + K+  QSC L+ + +LN+ 
Sbjct: 14  DFH-GHTCPDIALGYRIAQLAQREXGI-----RPAPDSECLVKAYTQSCALDAIQVLNKA 67

Query: 142 EI 143
            I
Sbjct: 68  TI 69


>pdb|1WE8|A Chain A, Solution Structure Of Kh Domain In Protein Bab28342
          Length = 104

 Score = 26.9 bits (58), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 111 IIGRQGESCDSVCKSSGQSCVLNK 134
           IIGR GE+  S+CK+SG     +K
Sbjct: 29  IIGRGGETIRSICKASGAKITCDK 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,979,627
Number of Sequences: 62578
Number of extensions: 223635
Number of successful extensions: 392
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 2
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)