BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028770
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 286 bits (733), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 136/194 (70%), Positives = 164/194 (84%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+Y L HI+AGDLLRAEIAAGSENGKRAKE MEKGQLVPDEIVV MVKERL QPD+QENGW
Sbjct: 28 KYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGW 87
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
LLDGYPRS SQA AL+ +PD FILL+VP++ LVERVVGRRLDPVTGKIYH+KYSPPE
Sbjct: 88 LLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPE 147
Query: 128 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVA 187
+EIA+RLT+RFDDTEEKVKLRL+T++ N+E++LS YE++ V+V G + VFA+ID
Sbjct: 148 NEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDEL 207
Query: 188 LTNLLEQRKSALGS 201
L ++LE++ + S
Sbjct: 208 LGSILEKKNEMVSS 221
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 110/161 (68%), Gaps = 5/161 (3%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG+ I+ GD+LRA + +GSE GK+AK+ M+ G+LV DE+V+ +VKER++Q D + NG+
Sbjct: 23 KYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR-NGF 81
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
LLDG+PR++ QA A+K+ G D + +VP++ +V+R+VGRR+ +G++YHVK++PP+
Sbjct: 82 LLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPK 141
Query: 128 T----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 164
D LT R DD EE V+ RL +H ++ Y
Sbjct: 142 VEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 110/161 (68%), Gaps = 5/161 (3%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG+ I+ GD+LRA + +GSE GK+AK+ M+ G+LV DE+V+ +VKER++Q D + NG+
Sbjct: 23 KYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR-NGF 81
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
LLDG+PR++ QA A+K+ G D + +VP++ +V+R+VGRR+ +G++YHVK++PP+
Sbjct: 82 LLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPK 141
Query: 128 T----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 164
D LT R DD EE V+ RL +H ++ Y
Sbjct: 142 VEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 110/161 (68%), Gaps = 5/161 (3%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG+ I+ GD+LRA + +GSE GK+AK+ M+ G+LV DE+V+ +VKER++Q D + NG+
Sbjct: 23 KYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR-NGF 81
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
LLDG+PR++ QA A+K+ G D + +VP++ +V+R+VGRR+ +G++YHVK++PP+
Sbjct: 82 LLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPK 141
Query: 128 T----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 164
D LT R DD EE V+ RL +H ++ Y
Sbjct: 142 VEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 110/161 (68%), Gaps = 5/161 (3%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG+ I+ GD+LRA + +GSE GK+AK+ M+ G+LV DE+V+ +VKER++Q D + NG+
Sbjct: 23 KYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR-NGF 81
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
LLDG+PR++ QA A+K+ G D + +VP++ +V+R+VGRR+ +G++YHVK++PP+
Sbjct: 82 LLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPK 141
Query: 128 T----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 164
D LT R DD EE V+ RL +H ++ Y
Sbjct: 142 VEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 118/191 (61%), Gaps = 11/191 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG HI+ GD+ RA I G+E G +AK M++G LVPDE+ + +V+ERLS+ D +NG+
Sbjct: 23 KYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDC-DNGF 81
Query: 68 LLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
LLDG+PR++ QA AL + G + + + ++V ++ L+ R+ GRR+ V G YH+ +
Sbjct: 82 LLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTGRRICKVCGTSYHLLF 141
Query: 124 SPPE----TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNK 177
+PP+ D+ L +R DD + V RL+ + + +L+ Y+ +V V +NG +
Sbjct: 142 NPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDI 201
Query: 178 EDVFAQIDVAL 188
+DVF +DV L
Sbjct: 202 KDVFKDLDVIL 212
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
YG+ HI+ GD+ RA + G+ G +AK++M++G LVPDE+ + +V+ERLS+ D Q NG+L
Sbjct: 24 YGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQ-NGFL 82
Query: 69 LDGYPRSLSQATALKKY----GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124
LDG+PR+++QA AL+ G + D I ++V +D L+ER+ GRR+ G YH+ +
Sbjct: 83 LDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFH 142
Query: 125 PPE----TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTV--EVNGSVNKE 178
PP D+ L +R DD E V RL+ + ++ ++ YE +NG + E
Sbjct: 143 PPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDME 202
Query: 179 DVFAQIDVALTNL 191
VFA I L L
Sbjct: 203 KVFADIRELLGGL 215
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 119/194 (61%), Gaps = 11/194 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +V+ERLS+ D E G+
Sbjct: 23 KYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSDC-ERGF 81
Query: 68 LLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
LLDG+PR+++Q L++ G D I ++V ++ L+ER+ GRR+ V G YH+ +
Sbjct: 82 LLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLTGRRICSVCGTTYHLVF 141
Query: 124 SPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNK 177
+PP+T D+ L +R DD EE V RL+ + +L+ Y+ +V V VNG +
Sbjct: 142 NPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDSKEVLVNVNGQQDI 201
Query: 178 EDVFAQIDVALTNL 191
+DVFA + V L L
Sbjct: 202 QDVFADVKVILGGL 215
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 115/193 (59%), Gaps = 11/193 (5%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +VKERL + D E G+L
Sbjct: 24 YGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ERGFL 82
Query: 69 LDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124
LDG+PR+++Q L++YG D I +EV +D L+ER+ GRR+ V G YH+ ++
Sbjct: 83 LDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFN 142
Query: 125 PPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKE 178
PP+T D+ L +R DD EE V RL+ + + +L Y + V VNG + +
Sbjct: 143 PPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLVNVNGQRDIQ 202
Query: 179 DVFAQIDVALTNL 191
DV+A + L L
Sbjct: 203 DVYADVKDLLGGL 215
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 115/193 (59%), Gaps = 11/193 (5%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +VKERL + D E G+L
Sbjct: 24 YGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ERGFL 82
Query: 69 LDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124
LDG+PR+++Q L++YG D I +EV +D L+ER+ GRR+ V G YH+ ++
Sbjct: 83 LDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFN 142
Query: 125 PPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKE 178
PP+T D+ L +R DD EE V RL+ + ++ +L Y + VNG + +
Sbjct: 143 PPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLDFYSEKGYLANVNGQRDIQ 202
Query: 179 DVFAQIDVALTNL 191
DV+A + L L
Sbjct: 203 DVYADVKDLLGGL 215
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +VKERL + D E G+L
Sbjct: 24 YGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ERGFL 82
Query: 69 LDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124
LDG+PR+++Q L++YG D I +EV +D L+ER+ GRR+ V G YH+ ++
Sbjct: 83 LDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFN 142
Query: 125 PPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKE 178
PP+T D+ L +R DD EE V RL+ + + +L Y + VNG + +
Sbjct: 143 PPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQDIQ 202
Query: 179 DVFAQIDVALTNL 191
DV+A + L L
Sbjct: 203 DVYADVKDLLGGL 215
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 101/163 (61%), Gaps = 5/163 (3%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
++G+ I+ GD LRA + AG+ G AK + ++G+LVPD +++ +VKERL + D NG+
Sbjct: 31 KFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLIIGLVKERLKEADCA-NGY 89
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
L DG+PR+++QA A K+ G D + ++VP ++ER GRR P +G+ YHVK++PP+
Sbjct: 90 LFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIERXSGRRTHPASGRTYHVKFNPPK 149
Query: 128 T----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED 166
D L +R DD EE VK RL + + +++ Y D
Sbjct: 150 VEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGD 192
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +VKERL + D E G+L
Sbjct: 24 YGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ERGFL 82
Query: 69 LDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124
LDG+PR+++Q L++YG D I +EV +D L+ER+ GRR+ V G YH+ ++
Sbjct: 83 LDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFN 142
Query: 125 PPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKE 178
PP+T D+ L +R DD EE V RL+ + + +L Y + VNG + +
Sbjct: 143 PPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQ 202
Query: 179 DVFAQIDVALTNL 191
DV+A + L L
Sbjct: 203 DVYADVKDLLGGL 215
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +VKERL + D E G+L
Sbjct: 24 YGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ERGFL 82
Query: 69 LDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124
LDG+PR+++Q L++YG D I +EV +D L+ER+ GRR+ V G YH+ ++
Sbjct: 83 LDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFN 142
Query: 125 PPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKE 178
PP+T D+ L +R DD EE V RL+ + + +L Y + VNG + +
Sbjct: 143 PPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQ 202
Query: 179 DVFAQIDVALTNL 191
DV+A + L L
Sbjct: 203 DVYADVKDLLGGL 215
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 116/194 (59%), Gaps = 11/194 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +VKERL + D E G+
Sbjct: 23 KYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ERGF 81
Query: 68 LLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
LLDG+PR+++Q L++ G D I ++V +D L+ER+ GRR+ V G YH+ +
Sbjct: 82 LLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVF 141
Query: 124 SPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNK 177
+PP+T D+ L +R DD EE V RL+ + +L Y++ V VNG +
Sbjct: 142 NPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDI 201
Query: 178 EDVFAQIDVALTNL 191
+DV+A + V L L
Sbjct: 202 QDVYADLKVLLGGL 215
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +VKERL + D E G+L
Sbjct: 24 YGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ERGFL 82
Query: 69 LDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124
LDG+PR+++Q L++YG D I +EV +D L+ER+ GRR+ V G YH+ ++
Sbjct: 83 LDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFN 142
Query: 125 PPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKE 178
PP+T D+ L +R DD EE V RL+ + + +L Y + VNG + +
Sbjct: 143 PPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQ 202
Query: 179 DVFAQIDVALTNL 191
DV+A + L L
Sbjct: 203 DVYADVKDLLEGL 215
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
YG+ HI+ GD+ RA + + G AK +++KG+LVPDE+ + +VKERL + D E G+L
Sbjct: 24 YGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ERGFL 82
Query: 69 LDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124
LDG+PR+++Q L++YG D I +EV +D L+ER+ GRR+ V G YH+ ++
Sbjct: 83 LDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFN 142
Query: 125 PPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKE 178
PP+T D+ L +R DD EE V RL+ + + +L Y + VNG + +
Sbjct: 143 PPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQ 202
Query: 179 DVFAQIDVALTNL 191
DV+A + L L
Sbjct: 203 DVYADVKDLLGRL 215
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 112/181 (61%), Gaps = 13/181 (7%)
Query: 10 GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLL 69
G VHI+ GD+LR + G+ GK+AKE+ME+G+LVPD++++ +++E + +
Sbjct: 25 GFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVF----PKHGNVIF 80
Query: 70 DGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSP 125
DG+PR++ QA A L+K G + D +L EVP++ ++ER+ GRR++P TG++YHVKY+P
Sbjct: 81 DGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNP 140
Query: 126 PETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVE--VNGSVNKEDVFAQ 183
P ++ +R DD E +K RL+ + ++ Y+ + ++ S E+V+ Q
Sbjct: 141 PPP---GVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQ 197
Query: 184 I 184
+
Sbjct: 198 V 198
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 113/192 (58%), Gaps = 11/192 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+ + H+A GD+LRA +A+GSE GK+ K M+ G+LV DE+VV ++++ L P + NG+
Sbjct: 39 NFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCK-NGF 97
Query: 68 LLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
LLDG+PR++ QA L +K + D I +P+ L+ R+ GR + P +G+ YH ++
Sbjct: 98 LLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPKSGRSYHEEF 157
Query: 124 SPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVE--VNGSVNK 177
+PP+ D+I L +R DD E+ +K+RL+ +H ++ Y + ++ S
Sbjct: 158 NPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEYYRKRGIHSAIDASQTP 217
Query: 178 EDVFAQIDVALT 189
+ VFA I A +
Sbjct: 218 DVVFASILAAFS 229
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 112/194 (57%), Gaps = 11/194 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+Y + HI+ GD+ RA I G+E G +AK M++G LVPDE+ + +V ERLS+ D Q+ G+
Sbjct: 23 KYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQK-GF 81
Query: 68 LLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
LLDG+PR+++QA AL G + D + ++V ++ L++R+ GR + G YH +
Sbjct: 82 LLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIF 141
Query: 124 SPPETDEIAAR----LTKRFDDTEEKVKLRLKTHHHNVEAVLSLY--EDVTVEVNGSVNK 177
+PP + I + L +R DD E VK RL + + +L Y + V +++G +
Sbjct: 142 NPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDI 201
Query: 178 EDVFAQIDVALTNL 191
+ VF I+ L L
Sbjct: 202 KKVFVDINDLLGGL 215
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 11/187 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YGL H++ GD+LR I G++ G AK +E G V DEIV+ +VKE+ NG+
Sbjct: 28 EYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDL-GVCVNGF 86
Query: 68 LLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
+LDG+PR++ QA L K G I E+ + ++ER+ GR P +G+IYHVKY
Sbjct: 87 VLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKY 146
Query: 124 SPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTV--EVNGSVNK 177
+PP+ D++ L R DD E VK+RL H ++ YED+ + VN +
Sbjct: 147 NPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPP 206
Query: 178 EDVFAQI 184
++V QI
Sbjct: 207 KEVTEQI 213
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 113/192 (58%), Gaps = 11/192 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+ + H+A GD+LRA +A+GSE GK+ K M+ G+LV DE+V+ ++++ L P + NG+
Sbjct: 39 NFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK-NGF 97
Query: 68 LLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
LLDG+PR++ QA L +K + D I +P+ L+ R+ GR + P +G+ YH ++
Sbjct: 98 LLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEF 157
Query: 124 SPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVE--VNGSVNK 177
+PP+ D+I L +R DD ++ +K+RL+ +H ++ Y + ++ S
Sbjct: 158 NPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTP 217
Query: 178 EDVFAQIDVALT 189
+ VFA I A +
Sbjct: 218 DVVFASILAAFS 229
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 10/187 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
++ H+A GD+LR++IA G++ G AK+ M++G LV D+I+V M+K+ L+ + +NG+
Sbjct: 27 RFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGF 86
Query: 68 LLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
+LDG+PR++ QA LK+ G + I L+V ++ LV R+ GR + P +G+ YH +
Sbjct: 87 ILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIF 146
Query: 124 SPPETDE----IAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTV--EVNGSVNK 177
+PP+ D L +R DD + +K RL +H E ++ Y+ + V+ S
Sbjct: 147 NPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPP 206
Query: 178 EDVFAQI 184
V+A I
Sbjct: 207 ATVWADI 213
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 8/170 (4%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
++ H+A GD+LR++IA G++ G AK+ M++G LV D+I+V M+K+ L+ + +NG+
Sbjct: 27 RFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGF 86
Query: 68 LLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
+LDG+PR++ QA LK+ G + I L+V ++ LV R+ GR + P +G+ YH +
Sbjct: 87 ILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIF 146
Query: 124 SPPETDE----IAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTV 169
+PP+ D L +R DD + +K RL +H E ++ Y+ +
Sbjct: 147 NPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGI 196
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 25/186 (13%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG H++ GDLLRAE+++GS GK E MEKGQLVP E V+ M+++ + G+
Sbjct: 32 KYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGF 91
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
L+DGYPR + Q ++ QP L + ++ +T+ +R++ R
Sbjct: 92 LIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKR------------------ 133
Query: 128 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQID 185
+ R DD EE +K RL+T++ E V++ YE + +VN + +DVF+Q+
Sbjct: 134 -----GETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVC 188
Query: 186 VALTNL 191
L L
Sbjct: 189 THLDTL 194
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 25/187 (13%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG H++ GDLLR+E+++GS GK+ E MEKGQLVP E V+ M+++ + + G+
Sbjct: 32 KYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGF 91
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
L+DGYPR + Q ++ QP L + ++ +T+ +R++ R
Sbjct: 92 LIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKR------------------ 133
Query: 128 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQID 185
+ R DD EE +K RL+T++ E V++ YE + +VN + + VF+Q+
Sbjct: 134 -----GETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVC 188
Query: 186 VALTNLL 192
L LL
Sbjct: 189 THLDALL 195
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 8/193 (4%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+ L H+++GDLLR + G+E G AK +++G+L+PD+++ +V L + + W
Sbjct: 29 HFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELK--NLTQYNW 86
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
LLDG+PR+L QA AL + +Q D I L VP + + +R+ R + P +G++Y+++++PP+
Sbjct: 87 LLDGFPRTLPQAEALDR-AYQIDTVINLNVPFEVIKQRLTARWIHPGSGRVYNIEFNPPK 145
Query: 128 T----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTV-EVNGSVNKEDVFA 182
T D L +R DD E V RLK + E VL Y V E ++
Sbjct: 146 TMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWP 205
Query: 183 QIDVALTNLLEQR 195
+ L L QR
Sbjct: 206 HVYAFLQTKLPQR 218
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 107/187 (57%), Gaps = 10/187 (5%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
++ H+A GD+LR++IA G++ G AK+ M++G LV D+I+V M+K+ L+ + +NG+
Sbjct: 27 RFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGF 86
Query: 68 LLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
+L G+PR++ QA LK+ G + I L+V ++ LV R+ GR + P +G+ YH +
Sbjct: 87 ILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIF 146
Query: 124 SPPETDE----IAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTV--EVNGSVNK 177
+PP+ D L + DD + +K RL +H E ++ Y+ + V+ S
Sbjct: 147 NPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPP 206
Query: 178 EDVFAQI 184
V+A I
Sbjct: 207 ATVWADI 213
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 7/162 (4%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+ L H+++GDLLR + G+E G AK +++G+L+PD+++ + L + + W
Sbjct: 30 HFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELK--NLTQYSW 87
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
LLDG+PR+L QA AL + +Q D I L VP + + +R+ R + P +G++Y+++++PP+
Sbjct: 88 LLDGFPRTLPQAEALDR-AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPK 146
Query: 128 T----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 165
T D L +R DD E V RLK + + VL Y+
Sbjct: 147 TVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQ 188
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 7/161 (4%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
+GL H+++G LR I A +E G+ AK+++EK LVPD ++ ++ L Q WL
Sbjct: 51 FGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH--WL 108
Query: 69 LDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET 128
LDG+PR+L QA AL K + DL I L +P +TL +R+ R + P +G++Y++ ++PP
Sbjct: 109 LDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHV 167
Query: 129 ----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 165
D L ++ DD E V RL+ + + V+ LY+
Sbjct: 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYK 208
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 7/161 (4%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
+GL H+++G LR I A +E G+ AK+++EK LVPD ++ ++ L Q WL
Sbjct: 29 FGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH--WL 86
Query: 69 LDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET 128
LDG+PR+L QA AL K + DL I L +P +TL +R+ R + P +G++Y++ ++PP
Sbjct: 87 LDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHV 145
Query: 129 ----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 165
D L ++ DD E V R + + + V+ LY+
Sbjct: 146 HGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYK 186
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 12 VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDG 71
H++ GDLLR +E G + K + +G+LV D++V+++V E+L P ++ G++LDG
Sbjct: 56 CHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKK-GFILDG 114
Query: 72 YPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
YPR++ QA L+K + D VP++ LV R+ GR + +G+IYH ++PP+
Sbjct: 115 YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPK 174
Query: 128 T----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVN 172
D L +R DD E+ +K RL ++S Y++ + +N
Sbjct: 175 VPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLIN 223
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 13/166 (7%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+Y L HI +G + R I G+E GK+AKE +++G LVPD+I + MV E L ++GW
Sbjct: 23 KYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLES--KGKDGW 80
Query: 68 LLDGYPRSLSQAT----ALKKYGFQPDLFILLEVPEDTLVERVVGRRL---DPVTGKIYH 120
LLDG+PR+ QA AL++ G + + I + +P + R++GRR+ +P
Sbjct: 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIF 140
Query: 121 VKYSPPETD---EIAARLTKRFDDTEE-KVKLRLKTHHHNVEAVLS 162
++ P D L+ R DD +E + R +++ V+ L+
Sbjct: 141 IEAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLA 186
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 13/166 (7%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+Y L HI +G + R I G+E GK+AKE +++G LVPD+I + MV E L ++GW
Sbjct: 23 KYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLES--KGKDGW 80
Query: 68 LLDGYPRSLSQAT----ALKKYGFQPDLFILLEVPEDTLVERVVGRRL---DPVTGKIYH 120
LLDG+PR+ QA AL++ G + + I + +P + R++GRR+ +P
Sbjct: 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIF 140
Query: 121 VKYSPPETD---EIAARLTKRFDDTEE-KVKLRLKTHHHNVEAVLS 162
+ P D L+ R DD +E + R +++ V+ L+
Sbjct: 141 IDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLA 186
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+YG H++ G+LLR E+A+ SE K ++ ME+G LVP IV+ ++KE + G+
Sbjct: 35 KYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGF 94
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
L+DGYPR + Q + P L I ++ DT+ R++
Sbjct: 95 LIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ------------------- 135
Query: 128 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTV--EVNGSVNKEDVFAQID 185
+R + DDT + + RL+ ++ V++ YE T ++N EDVF Q+
Sbjct: 136 ----MSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLC 191
Query: 186 VALTNLL 192
A+ ++
Sbjct: 192 TAIDSIF 198
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 32/180 (17%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+ G+ I+ G+L R I G++ G AK +++ G LVP ++ +V +RL+ PD+ NG+
Sbjct: 23 KLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAA-NGF 81
Query: 68 LLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
+LDGYPRS+ QA A L++ G D + V E+ L+ER+ GR
Sbjct: 82 ILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR-------------- 127
Query: 124 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQ 183
R DDT++ + R+K + +L Y D V+ ++VFA+
Sbjct: 128 -------------GRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFAR 174
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 32/180 (17%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+ G+ I+ G+L R I G++ G AK +++ G LVP ++ +V +RL+ PD+ NG+
Sbjct: 43 KLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAA-NGF 101
Query: 68 LLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY 123
+LDGYPRS+ QA A L++ G D + V E+ L+ER+ GR
Sbjct: 102 ILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR-------------- 147
Query: 124 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQ 183
R DDT++ + R+K + +L Y D V+ ++VFA+
Sbjct: 148 -------------GRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFAR 194
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 27/188 (14%)
Query: 9 YGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-DSQENG 66
Y VH++AGDLLRAE AGS+ G+ K +++GQ+VP EI + +++ +S + ++
Sbjct: 39 YSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHK 98
Query: 67 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPP 126
+L+DG+PR + QA + ++ + + + PED ++ER++ R
Sbjct: 99 FLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLER----------------- 141
Query: 127 ETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVT--VEVNGSVNKEDVFAQI 184
+ + R DD E +K R T V+ +E + V V + EDV+ +
Sbjct: 142 ------GKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 195
Query: 185 DVALTNLL 192
A+ + L
Sbjct: 196 QDAIRDSL 203
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 27/173 (15%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
++ H+++GDLLRAE+ +GS GK K ME+G+LVP E+V+ ++KE + + + +
Sbjct: 52 KFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNCHF 111
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
L+DGYPR L Q +K I +V E+ + +R++ R
Sbjct: 112 LIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKR------------------ 153
Query: 128 TDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED----VTVEVNGSVN 176
A + R DD EE + R +T + + V+ Y+ +T++ +G+V+
Sbjct: 154 -----AETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVD 201
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 67
+ G ++ GD+LR +A G+ G+R + ME+G LVPD++++ +++E L++
Sbjct: 27 ELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER------V 80
Query: 68 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 127
+ DG+PR+L+QA AL + +L E G RL G +
Sbjct: 81 IFDGFPRTLAQAEALDR--------LLSE----------TGTRL---LGVVLVEVPEEEL 119
Query: 128 TDEIAAR--LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVNGSVNKEDVFAQ 183
I R L R DD EE V+ RL+ + E ++ YE V V+G ++V+A+
Sbjct: 120 VRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYAR 179
Query: 184 IDVAL 188
I AL
Sbjct: 180 IRAAL 184
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 35/185 (18%)
Query: 8 QYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ---PDSQ 63
+YG H++AG+LLR E S+ G+ ++++++G++VP EI ++++K + Q ++Q
Sbjct: 26 KYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQ 85
Query: 64 ENGWLLDGYPRSLSQATALKKY--GFQPDLFIL-LEVPEDTLVERVVGRRLDPVTGKIYH 120
+N +L+DG+PR+ K G F+L + + +ER + R
Sbjct: 86 KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLER----------- 134
Query: 121 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDV 180
+ + R DD E ++ R++T+ + + ++ LYE++ G V K D
Sbjct: 135 ------------GKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEM-----GKVKKIDA 177
Query: 181 FAQID 185
+D
Sbjct: 178 SKSVD 182
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 9 YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 68
+G VH++AGDLLR E +GS++G+ ++ G++VP + V ++K + +Q +L
Sbjct: 30 FGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA--NQGKNFL 87
Query: 69 LDGYPRSLSQATALKKY--GFQPDLFIL-LEVPEDTLVERVVGRRLDPVTGKIYHVKYSP 125
+DG+PR+ + ++ F F+L + PE+ + +R++ R S
Sbjct: 88 VDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR------------GESS 135
Query: 126 PETDEIAARLTKRFDDTEEKVKLRLKTHHHN 156
+D+ + KRF+ V+ +L H+N
Sbjct: 136 GRSDDNIESIKKRFNTFN--VQTKLVIDHYN 164
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 97 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD--TEEKVKLRLKTHH 154
+P T + VG+ L + GK+ + + P + LT R + T E++K +K
Sbjct: 205 IPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAA 264
Query: 155 HN-VEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190
++ VL ED V+ + NG V A+ +AL +
Sbjct: 265 EGEMKGVLGYTEDDVVSTDFNGEVXTSVFDAKAGIALND 303
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 97 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD--TEEKVKLRLKTHH 154
+P T + VG+ L + GK+ + + P + LT R + T E++K +K
Sbjct: 204 IPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAA 263
Query: 155 HN-VEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190
++ VL ED V+ + NG V A+ +AL +
Sbjct: 264 EGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALND 302
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 97 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD--TEEKVKLRLKTHH 154
+P T + VG+ L + GK+ + + P + LT R + T E++K +K
Sbjct: 205 IPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAA 264
Query: 155 HN-VEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190
++ VL ED V+ + NG V A+ +AL +
Sbjct: 265 EGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALND 303
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 97 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD--TEEKVKLRLKTHH 154
+P T + VG+ L + GK+ + + P + LT R + T E++K +K
Sbjct: 204 IPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAA 263
Query: 155 HN-VEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190
++ VL ED V+ + NG V A+ +AL +
Sbjct: 264 EGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALND 302
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 97 VPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD--TEEKVKLRLKTHH 154
+P T + VG+ L + GK+ + P + LT R + T E++K +K
Sbjct: 204 IPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAA 263
Query: 155 HN-VEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190
+ VL ED V+ + NG V A+ +AL +
Sbjct: 264 EGEXKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALND 302
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 124 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTV 169
+PP + + RL R +++EK++ R+ VE +++LY+ V V
Sbjct: 125 APPSLEHLRERLVGRGTESDEKIQSRINEARKEVE-MMNLYDYVVV 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,015,052
Number of Sequences: 62578
Number of extensions: 242824
Number of successful extensions: 761
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 61
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)