Query 028770
Match_columns 204
No_of_seqs 169 out of 1113
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 16:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 5.5E-48 1.2E-52 313.1 21.9 186 2-188 48-243 (244)
2 PLN02459 probable adenylate ki 100.0 3.1E-45 6.8E-50 298.4 21.2 192 2-194 46-255 (261)
3 PRK14526 adenylate kinase; Pro 100.0 3.2E-43 6.9E-48 281.0 20.0 187 2-190 17-209 (211)
4 TIGR01351 adk adenylate kinase 100.0 5.5E-43 1.2E-47 279.9 21.0 187 2-188 16-209 (210)
5 PRK14529 adenylate kinase; Pro 100.0 8.9E-43 1.9E-47 279.6 18.5 185 2-188 17-222 (223)
6 PLN02842 nucleotide kinase 100.0 1.8E-41 3.8E-46 297.3 22.0 197 2-198 14-210 (505)
7 PRK00279 adk adenylate kinase; 100.0 2.5E-41 5.4E-46 271.2 20.9 188 2-190 17-214 (215)
8 KOG3078 Adenylate kinase [Nucl 100.0 2.9E-41 6.3E-46 269.1 18.8 195 2-198 32-232 (235)
9 PTZ00088 adenylate kinase 1; P 100.0 1.3E-40 2.8E-45 268.9 19.8 185 2-187 23-228 (229)
10 KOG3079 Uridylate kinase/adeny 100.0 1.6E-40 3.5E-45 253.7 18.4 165 2-190 25-193 (195)
11 PRK13808 adenylate kinase; Pro 100.0 8.4E-37 1.8E-41 256.7 21.5 173 2-193 17-196 (333)
12 PRK14530 adenylate kinase; Pro 100.0 1.1E-36 2.4E-41 244.2 20.1 183 2-190 20-213 (215)
13 PRK14528 adenylate kinase; Pro 100.0 1.5E-34 3.2E-39 227.2 20.0 162 2-187 18-185 (186)
14 PRK14531 adenylate kinase; Pro 100.0 2.8E-33 6E-38 219.4 20.2 158 2-188 19-182 (183)
15 cd01428 ADK Adenylate kinase ( 100.0 2.6E-33 5.6E-38 220.4 18.0 174 2-180 16-194 (194)
16 PRK14532 adenylate kinase; Pro 100.0 1.4E-32 3.1E-37 215.9 20.8 164 2-189 17-186 (188)
17 PF00406 ADK: Adenylate kinase 100.0 6.9E-33 1.5E-37 210.6 15.2 132 2-166 13-148 (151)
18 PRK14527 adenylate kinase; Pro 100.0 1.9E-31 4.2E-36 210.2 20.6 162 2-188 23-190 (191)
19 PLN02200 adenylate kinase fami 100.0 2.4E-31 5.3E-36 215.8 20.1 167 2-195 60-229 (234)
20 PRK02496 adk adenylate kinase; 100.0 4.7E-31 1E-35 206.7 20.9 160 2-189 18-183 (184)
21 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 1E-30 2.2E-35 204.2 20.5 162 2-188 16-182 (183)
22 COG0563 Adk Adenylate kinase a 100.0 3.9E-30 8.6E-35 200.3 16.9 157 2-188 17-177 (178)
23 TIGR01360 aden_kin_iso1 adenyl 100.0 5.8E-27 1.3E-31 183.3 20.9 166 2-190 20-187 (188)
24 PRK13974 thymidylate kinase; P 99.6 1E-13 2.3E-18 110.9 13.7 137 26-195 46-211 (212)
25 PRK13973 thymidylate kinase; P 99.4 3.8E-12 8.2E-17 102.0 14.2 165 2-193 20-209 (213)
26 PRK01184 hypothetical protein; 99.4 5.1E-11 1.1E-15 93.0 17.7 156 3-193 18-181 (184)
27 PRK08356 hypothetical protein; 99.3 7.3E-11 1.6E-15 93.2 12.5 100 2-110 22-136 (195)
28 PRK03839 putative kinase; Prov 99.0 1.5E-08 3.2E-13 78.8 12.0 135 2-191 17-154 (180)
29 PRK06217 hypothetical protein; 98.9 3.1E-08 6.6E-13 77.4 11.8 153 2-190 18-179 (183)
30 COG0125 Tmk Thymidylate kinase 98.9 5.2E-07 1.1E-11 72.0 18.0 141 27-193 42-206 (208)
31 PRK13975 thymidylate kinase; P 98.7 6.2E-07 1.3E-11 70.4 14.7 139 27-193 36-193 (196)
32 PLN02924 thymidylate kinase 98.6 9.4E-07 2E-11 71.2 13.2 133 26-193 55-206 (220)
33 PRK08233 hypothetical protein; 98.6 9.1E-08 2E-12 74.0 6.9 152 2-190 20-177 (182)
34 PRK00698 tmk thymidylate kinas 98.6 2.8E-06 6E-11 67.0 15.1 138 27-192 42-204 (205)
35 PHA02530 pseT polynucleotide k 98.6 1.2E-07 2.5E-12 79.5 7.3 142 2-179 19-171 (300)
36 PF02223 Thymidylate_kin: Thym 98.5 2.1E-06 4.5E-11 67.0 12.3 130 27-184 35-186 (186)
37 KOG3327 Thymidylate kinase/ade 98.5 2.7E-06 5.9E-11 65.9 12.4 134 27-195 45-200 (208)
38 cd01672 TMPK Thymidine monopho 98.5 7.3E-06 1.6E-10 63.9 14.6 99 64-189 86-199 (200)
39 PRK13949 shikimate kinase; Pro 98.3 2.3E-05 5.1E-10 60.5 13.2 93 3-109 19-114 (169)
40 PRK08118 topology modulation p 98.3 1.7E-06 3.7E-11 66.7 6.4 83 2-111 18-101 (167)
41 PRK03731 aroL shikimate kinase 98.3 4.3E-05 9.3E-10 58.7 13.5 146 2-190 19-170 (171)
42 PRK07933 thymidylate kinase; V 98.3 3.9E-05 8.5E-10 61.5 13.5 79 88-188 132-211 (213)
43 TIGR00041 DTMP_kinase thymidyl 98.2 3.2E-05 6.9E-10 60.6 12.4 40 71-110 106-149 (195)
44 PRK13976 thymidylate kinase; P 98.2 0.00021 4.5E-09 57.2 16.9 78 86-195 122-206 (209)
45 KOG3347 Predicted nucleotide k 98.2 6.1E-05 1.3E-09 56.7 11.5 137 1-189 23-165 (176)
46 PF05191 ADK_lid: Adenylate ki 98.1 3.9E-07 8.5E-12 52.0 -0.7 32 109-140 1-36 (36)
47 PRK04040 adenylate kinase; Pro 98.1 0.00027 5.9E-09 55.5 14.7 155 2-188 19-187 (188)
48 PRK14734 coaE dephospho-CoA ki 98.1 6.7E-05 1.4E-09 59.6 11.0 146 7-192 22-196 (200)
49 PRK04182 cytidylate kinase; Pr 98.1 0.00031 6.7E-09 53.9 14.5 94 2-110 17-113 (180)
50 PRK00081 coaE dephospho-CoA ki 97.9 0.00011 2.5E-09 57.9 10.3 144 7-190 23-193 (194)
51 TIGR02173 cyt_kin_arch cytidyl 97.9 0.00068 1.5E-08 51.7 14.4 96 2-110 17-113 (171)
52 PRK13947 shikimate kinase; Pro 97.8 0.001 2.2E-08 50.9 13.3 94 2-110 18-115 (171)
53 COG1936 Predicted nucleotide k 97.7 0.0013 2.7E-08 50.8 12.0 139 2-190 17-156 (180)
54 COG1102 Cmk Cytidylate kinase 97.7 0.002 4.4E-08 49.3 12.8 94 2-109 17-111 (179)
55 PRK14731 coaE dephospho-CoA ki 97.7 0.00074 1.6E-08 53.8 11.0 72 88-192 133-204 (208)
56 PRK12339 2-phosphoglycerate ki 97.7 0.00037 8.1E-09 55.2 9.1 151 2-184 20-191 (197)
57 PRK13946 shikimate kinase; Pro 97.6 0.0058 1.3E-07 47.6 15.0 152 3-196 28-182 (184)
58 PRK14730 coaE dephospho-CoA ki 97.6 0.0016 3.5E-08 51.4 11.8 148 2-189 18-193 (195)
59 PRK14738 gmk guanylate kinase; 97.5 0.0016 3.6E-08 51.7 11.1 89 66-191 105-195 (206)
60 COG0237 CoaE Dephospho-CoA kin 97.5 0.0021 4.6E-08 51.1 10.8 156 3-194 19-196 (201)
61 TIGR03574 selen_PSTK L-seryl-t 97.5 0.0033 7.1E-08 51.3 12.3 110 48-192 56-171 (249)
62 cd02030 NDUO42 NADH:Ubiquinone 97.4 0.0042 9.1E-08 49.8 12.1 72 87-186 141-217 (219)
63 COG0703 AroK Shikimate kinase 97.3 0.012 2.7E-07 45.5 13.0 145 3-192 20-170 (172)
64 TIGR00152 dephospho-CoA kinase 97.3 0.0035 7.6E-08 48.9 10.0 142 4-185 18-187 (188)
65 smart00072 GuKc Guanylate kina 97.3 0.0036 7.8E-08 48.8 10.0 117 32-190 57-182 (184)
66 PRK00131 aroK shikimate kinase 97.2 0.034 7.5E-07 42.1 14.6 148 3-192 22-173 (175)
67 PRK13948 shikimate kinase; Pro 97.2 0.026 5.7E-07 44.1 13.7 146 3-193 28-178 (182)
68 PRK00625 shikimate kinase; Pro 97.1 0.021 4.5E-07 44.3 12.7 98 2-110 17-117 (173)
69 PLN02422 dephospho-CoA kinase 97.0 0.019 4.1E-07 46.7 12.3 144 7-191 22-195 (232)
70 TIGR01313 therm_gnt_kin carboh 97.0 0.033 7.1E-07 42.1 12.9 89 66-189 73-162 (163)
71 PRK10078 ribose 1,5-bisphospho 96.9 0.018 3.9E-07 44.8 11.1 87 65-191 90-177 (186)
72 TIGR02322 phosphon_PhnN phosph 96.9 0.018 4E-07 44.3 10.6 88 65-190 91-178 (179)
73 PRK06762 hypothetical protein; 96.8 0.016 3.4E-07 44.1 9.6 138 3-188 20-162 (166)
74 cd00464 SK Shikimate kinase (S 96.8 0.064 1.4E-06 39.9 12.7 94 3-110 17-113 (154)
75 PRK14732 coaE dephospho-CoA ki 96.8 0.025 5.4E-07 44.7 10.6 147 5-192 18-192 (196)
76 PRK07261 topology modulation p 96.8 0.0025 5.4E-08 49.2 4.8 85 2-111 17-101 (171)
77 PF01202 SKI: Shikimate kinase 96.7 0.056 1.2E-06 40.9 12.1 95 3-110 10-106 (158)
78 PRK08154 anaerobic benzoate ca 96.6 0.076 1.6E-06 44.9 12.9 149 3-193 151-304 (309)
79 PRK05057 aroK shikimate kinase 96.5 0.14 2.9E-06 39.5 13.2 144 3-189 22-170 (172)
80 PLN02199 shikimate kinase 96.5 0.44 9.5E-06 40.2 16.5 156 3-196 120-294 (303)
81 cd01673 dNK Deoxyribonucleosid 96.3 0.035 7.7E-07 43.2 8.9 24 87-110 123-146 (193)
82 PRK09825 idnK D-gluconate kina 96.3 0.066 1.4E-06 41.5 10.0 95 64-192 76-170 (176)
83 PRK03333 coaE dephospho-CoA ki 96.2 0.13 2.9E-06 45.0 12.7 147 6-192 21-194 (395)
84 PF01712 dNK: Deoxynucleoside 96.2 0.0063 1.4E-07 45.7 3.7 25 87-111 65-90 (146)
85 cd02022 DPCK Dephospho-coenzym 96.0 0.03 6.5E-07 43.4 7.0 98 8-110 21-143 (179)
86 PRK14021 bifunctional shikimat 96.0 0.2 4.4E-06 45.7 13.3 97 3-109 24-123 (542)
87 PTZ00451 dephospho-CoA kinase; 95.9 0.37 8E-06 39.5 13.4 72 88-192 136-209 (244)
88 PRK00300 gmk guanylate kinase; 95.8 0.32 6.9E-06 38.1 12.3 67 91-191 119-185 (205)
89 PRK13477 bifunctional pantoate 95.8 0.13 2.7E-06 46.7 11.0 76 90-190 422-503 (512)
90 PRK13951 bifunctional shikimat 95.5 0.19 4.1E-06 45.3 10.8 92 2-109 17-112 (488)
91 PRK00023 cmk cytidylate kinase 95.4 0.19 4.1E-06 40.5 9.8 22 2-23 21-42 (225)
92 PRK14733 coaE dephospho-CoA ki 95.4 0.74 1.6E-05 36.6 12.8 71 88-191 128-199 (204)
93 cd02020 CMPK Cytidine monophos 95.3 0.026 5.7E-07 41.5 4.1 88 2-109 16-103 (147)
94 KOG3220 Similar to bacterial d 95.2 0.55 1.2E-05 37.4 11.3 149 3-190 18-194 (225)
95 PF13671 AAA_33: AAA domain; P 95.1 0.1 2.2E-06 38.3 6.7 97 3-111 17-120 (143)
96 COG1428 Deoxynucleoside kinase 94.5 0.56 1.2E-05 37.5 9.7 24 88-111 126-149 (216)
97 COG3265 GntK Gluconate kinase 94.4 1.2 2.6E-05 33.8 10.8 142 3-190 13-159 (161)
98 PRK11545 gntK gluconate kinase 94.2 0.76 1.7E-05 35.0 9.9 92 65-190 69-160 (163)
99 KOG3877 NADH:ubiquinone oxidor 94.0 0.5 1.1E-05 39.5 8.8 49 63-111 170-240 (393)
100 cd00227 CPT Chloramphenicol (C 93.7 1.4 3.1E-05 33.7 10.7 47 64-110 85-132 (175)
101 TIGR03263 guanyl_kin guanylate 93.6 2.5 5.4E-05 32.2 12.2 88 65-189 92-179 (180)
102 COG0194 Gmk Guanylate kinase [ 93.5 0.41 8.8E-06 37.6 7.1 64 123-191 120-183 (191)
103 PF03668 ATP_bind_2: P-loop AT 93.5 2.5 5.5E-05 35.4 12.2 114 44-188 32-154 (284)
104 cd02021 GntK Gluconate kinase 93.4 0.59 1.3E-05 34.6 7.8 47 64-110 72-119 (150)
105 PRK12338 hypothetical protein; 93.2 3 6.5E-05 35.6 12.4 25 2-26 21-45 (319)
106 PF13207 AAA_17: AAA domain; P 92.6 0.02 4.4E-07 40.9 -1.2 96 2-110 16-111 (121)
107 COG1660 Predicted P-loop-conta 91.4 5.9 0.00013 32.9 11.6 117 44-190 32-157 (286)
108 PRK05416 glmZ(sRNA)-inactivati 91.4 5.8 0.00013 33.3 12.0 117 44-190 37-160 (288)
109 PRK14737 gmk guanylate kinase; 90.9 2.2 4.8E-05 33.2 8.6 85 65-189 95-183 (186)
110 PRK04220 2-phosphoglycerate ki 90.8 3.4 7.3E-05 35.0 10.0 107 2-110 109-236 (301)
111 COG0283 Cmk Cytidylate kinase 90.7 7.7 0.00017 31.2 12.2 22 2-23 21-42 (222)
112 TIGR00235 udk uridine kinase. 89.3 2.5 5.5E-05 33.2 7.8 41 65-110 107-147 (207)
113 PRK09518 bifunctional cytidyla 89.2 0.68 1.5E-05 43.7 5.1 29 167-195 207-236 (712)
114 PF01121 CoaE: Dephospho-CoA k 88.7 1.2 2.7E-05 34.6 5.5 99 4-109 18-143 (180)
115 PRK11860 bifunctional 3-phosph 88.5 6.7 0.00015 36.8 11.1 22 2-23 459-480 (661)
116 TIGR03575 selen_PSTK_euk L-ser 87.1 2.9 6.2E-05 36.0 7.2 44 67-110 130-176 (340)
117 COG3709 Uncharacterized compon 85.1 4.1 8.8E-05 31.6 6.3 67 91-191 117-183 (192)
118 PRK05480 uridine/cytidine kina 83.9 6.6 0.00014 30.8 7.5 40 66-110 108-147 (209)
119 COG4088 Predicted nucleotide k 83.1 5.3 0.00012 32.2 6.5 45 66-110 75-123 (261)
120 PF00625 Guanylate_kin: Guanyl 82.1 9.6 0.00021 29.2 7.7 48 138-190 135-182 (183)
121 KOG4235 Mitochondrial thymidin 81.2 7.5 0.00016 31.0 6.6 26 86-111 151-176 (244)
122 KOG1959 Glycosyl hydrolase, fa 81.0 40 0.00087 32.6 12.2 135 30-167 109-283 (996)
123 PLN02772 guanylate kinase 79.0 29 0.00062 30.6 10.2 63 123-189 253-317 (398)
124 TIGR01663 PNK-3'Pase polynucle 78.3 10 0.00022 34.7 7.5 80 4-111 388-470 (526)
125 PRK06547 hypothetical protein; 78.2 2 4.4E-05 33.1 2.6 104 2-110 32-139 (172)
126 TIGR00017 cmk cytidylate kinas 78.0 6 0.00013 31.7 5.4 21 3-23 20-40 (217)
127 COG2019 AdkA Archaeal adenylat 77.3 32 0.0007 26.8 15.0 93 7-108 26-129 (189)
128 COG4639 Predicted kinase [Gene 75.6 4.8 0.0001 30.8 3.9 61 46-107 51-115 (168)
129 PRK05541 adenylylsulfate kinas 73.6 6 0.00013 30.1 4.2 41 66-107 80-120 (176)
130 PRK03846 adenylylsulfate kinas 72.2 9.5 0.00021 29.7 5.1 39 67-105 98-138 (198)
131 TIGR03707 PPK2_P_aer polyphosp 70.4 46 0.00099 27.0 8.7 87 76-182 120-212 (230)
132 COG2405 Predicted nucleic acid 69.7 20 0.00044 26.9 5.9 54 2-55 98-153 (157)
133 KOG3354 Gluconate kinase [Carb 69.3 16 0.00035 28.2 5.4 140 4-190 31-188 (191)
134 TIGR03709 PPK2_rel_1 polyphosp 69.2 54 0.0012 27.2 9.0 86 76-181 145-236 (264)
135 PHA03132 thymidine kinase; Pro 68.0 16 0.00034 33.9 6.1 23 88-110 401-423 (580)
136 PRK05537 bifunctional sulfate 66.0 49 0.0011 30.6 9.0 23 168-190 539-562 (568)
137 cd02024 NRK1 Nicotinamide ribo 65.4 7.3 0.00016 30.5 3.1 41 66-111 113-153 (187)
138 PRK09270 nucleoside triphospha 65.0 4.7 0.0001 32.3 2.0 44 66-110 139-182 (229)
139 PF13238 AAA_18: AAA domain; P 64.8 7.1 0.00015 27.4 2.8 65 40-111 47-114 (129)
140 cd02019 NK Nucleoside/nucleoti 62.4 8.8 0.00019 24.5 2.6 31 65-97 33-63 (69)
141 KOG4479 Transcription factor e 62.4 15 0.00032 24.7 3.6 41 1-54 40-80 (92)
142 PHA03136 thymidine kinase; Pro 55.8 12 0.00026 32.7 3.0 25 87-111 190-214 (378)
143 PF08433 KTI12: Chromatin asso 54.6 50 0.0011 27.4 6.5 46 65-110 72-120 (270)
144 KOG1467 Translation initiation 51.9 62 0.0014 29.3 6.8 95 13-112 300-412 (556)
145 COG0572 Udk Uridine kinase [Nu 51.6 49 0.0011 26.7 5.7 41 64-110 108-149 (218)
146 cd02023 UMPK Uridine monophosp 49.6 81 0.0017 24.2 6.7 41 65-110 100-140 (198)
147 KOG0707 Guanylate kinase [Nucl 47.6 38 0.00082 27.5 4.5 71 123-194 155-225 (231)
148 cd02025 PanK Pantothenate kina 47.5 23 0.00049 28.3 3.3 81 88-180 128-218 (220)
149 PF08880 QLQ: QLQ; InterPro: 47.2 31 0.00066 19.5 2.8 20 33-52 16-35 (37)
150 PF13189 Cytidylate_kin2: Cyti 44.6 1.4E+02 0.003 22.8 7.2 99 2-109 16-134 (179)
151 PF06711 DUF1198: Protein of u 43.9 1.4E+02 0.003 22.4 6.6 78 2-90 28-106 (148)
152 TIGR03708 poly_P_AMP_trns poly 43.3 2.1E+02 0.0047 26.0 9.0 83 91-193 147-235 (493)
153 PRK07667 uridine kinase; Provi 43.2 53 0.0012 25.4 4.7 39 65-109 121-159 (193)
154 PRK06696 uridine kinase; Valid 41.4 42 0.00091 26.6 4.0 22 89-110 147-168 (223)
155 COG2240 PdxK Pyridoxal/pyridox 40.0 1.5E+02 0.0033 24.8 7.1 46 39-84 48-93 (281)
156 PF14581 SseB_C: SseB protein 39.2 1E+02 0.0022 21.3 5.3 54 140-193 14-78 (108)
157 PF03976 PPK2: Polyphosphate k 38.1 91 0.002 25.2 5.4 84 76-179 120-209 (228)
158 TIGR03708 poly_P_AMP_trns poly 36.5 3.3E+02 0.0071 24.9 9.1 70 90-179 405-477 (493)
159 PRK12724 flagellar biosynthesi 36.0 72 0.0016 28.5 4.8 74 2-84 240-323 (432)
160 cd01773 Faf1_like1_UBX Faf1 ik 35.6 58 0.0013 21.9 3.3 32 65-96 43-79 (82)
161 PRK05537 bifunctional sulfate 35.4 88 0.0019 28.9 5.5 67 31-98 355-430 (568)
162 PTZ00301 uridine kinase; Provi 35.3 1.3E+02 0.0029 23.8 5.9 41 66-111 109-149 (210)
163 cd01774 Faf1_like2_UBX Faf1 ik 34.7 55 0.0012 22.1 3.1 32 65-96 42-83 (85)
164 PF14066 DUF4256: Protein of u 34.6 26 0.00057 26.7 1.6 52 50-101 2-69 (173)
165 PF14240 YHYH: YHYH protein 34.6 16 0.00036 28.0 0.5 11 64-74 87-97 (166)
166 cd01772 SAKS1_UBX SAKS1-like U 33.2 94 0.002 20.4 4.1 44 53-96 30-78 (79)
167 TIGR02786 addB_alphas double-s 32.2 1.6E+02 0.0035 29.3 7.0 65 36-101 184-258 (1021)
168 PF07931 CPT: Chloramphenicol 30.6 78 0.0017 24.4 3.7 47 64-110 83-131 (174)
169 KOG3129 26S proteasome regulat 30.4 59 0.0013 26.1 3.0 23 53-75 40-64 (231)
170 PF15508 NAAA-beta: beta subun 29.6 1.8E+02 0.0038 19.8 5.1 17 89-105 4-20 (95)
171 COG2452 Predicted site-specifi 29.1 2E+02 0.0044 22.6 5.7 25 167-191 144-169 (193)
172 PF14453 ThiS-like: ThiS-like 27.3 56 0.0012 20.5 1.9 25 50-77 18-42 (57)
173 PF13986 DUF4224: Domain of un 27.3 38 0.00083 20.2 1.2 20 69-88 11-30 (47)
174 PF07526 POX: Associated with 26.0 95 0.0021 23.1 3.4 24 143-166 86-109 (140)
175 TIGR01935 NOT-MenG RraA famliy 25.6 64 0.0014 24.3 2.4 33 48-82 69-101 (150)
176 PHA02436 hypothetical protein 25.4 48 0.001 19.6 1.3 22 167-188 10-31 (52)
177 KOG1403 Predicted alanine-glyo 24.5 3.9E+02 0.0085 23.0 7.0 72 16-91 196-274 (452)
178 COG0645 Predicted kinase [Gene 24.2 3.4E+02 0.0074 21.0 10.5 104 2-113 18-128 (170)
179 smart00845 GatB_Yqey GatB doma 23.8 2.8E+02 0.006 20.5 5.6 53 4-56 77-146 (147)
180 cd01771 Faf1_UBX Faf1 UBX doma 23.0 1.1E+02 0.0024 20.3 2.9 33 64-96 41-78 (80)
181 PF10798 YmgB: Biofilm develop 22.8 1.9E+02 0.0042 18.2 3.9 31 30-60 7-37 (61)
182 PF10163 EnY2: Transcription f 22.8 87 0.0019 21.1 2.4 12 43-54 68-79 (86)
183 PRK12337 2-phosphoglycerate ki 22.4 6E+02 0.013 23.1 15.4 25 2-26 272-296 (475)
184 PF06414 Zeta_toxin: Zeta toxi 22.3 1.9E+02 0.0042 22.3 4.7 58 48-110 81-142 (199)
185 COG2326 Uncharacterized conser 21.8 4.7E+02 0.01 21.8 7.9 78 91-190 181-263 (270)
186 PF11305 DUF3107: Protein of u 21.8 1.2E+02 0.0026 20.0 2.8 23 168-190 13-35 (74)
187 PRK09372 ribonuclease activity 21.6 55 0.0012 24.9 1.4 32 49-82 74-105 (159)
188 smart00574 POX domain associat 21.5 1.4E+02 0.003 22.3 3.4 24 143-166 86-109 (140)
189 PRK05506 bifunctional sulfate 21.5 3.5E+02 0.0075 25.3 6.9 23 168-190 605-628 (632)
190 cd02026 PRK Phosphoribulokinas 21.4 1.5E+02 0.0032 24.5 4.0 22 88-109 115-136 (273)
191 PF15543 Toxin_65: Putative to 21.4 69 0.0015 22.8 1.7 28 65-92 98-125 (135)
192 COG4544 Uncharacterized conser 21.0 72 0.0016 26.1 2.0 29 66-100 88-119 (260)
193 PRK00889 adenylylsulfate kinas 21.0 3.3E+02 0.0072 20.2 5.7 39 66-106 78-117 (175)
194 PF04218 CENP-B_N: CENP-B N-te 20.8 50 0.0011 20.0 0.8 21 2-22 25-45 (53)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=5.5e-48 Score=313.13 Aligned_cols=186 Identities=35% Similarity=0.641 Sum_probs=175.5
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|+.||++||++|||+|++||++++.+|++|..+++++++|++|||+++..++.++|.+.++ .+||||||||||..||+.
T Consensus 48 a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~-~~g~ilDGfPRt~~Qa~~ 126 (244)
T PLN02674 48 SPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-QKGFILDGFPRTVVQAQK 126 (244)
T ss_pred HHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc-CCcEEEeCCCCCHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999998876 589999999999999998
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhh----hhccCCCCCcHHHHHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDDTEEKVKLRLKTH 153 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~----~rl~~r~dd~~e~i~~Rl~~y 153 (204)
|++ .+..|+.||+|+||++++++|+.+|++||.||++||+.++||..++.| ++|.+|.||+++.+++|+..|
T Consensus 127 l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y 206 (244)
T PLN02674 127 LDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAF 206 (244)
T ss_pred HHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHH
Confidence 875 468899999999999999999999999999999999999999877654 489999999999999999999
Q ss_pred HHHHHHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHH
Q 028770 154 HHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 154 ~~~~~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l 188 (204)
++++.||++||.+ +++.|||++++++||+.|..+|
T Consensus 207 ~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 207 HKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred HHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 9999999999985 7999999999999999999876
No 2
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=3.1e-45 Score=298.41 Aligned_cols=192 Identities=35% Similarity=0.528 Sum_probs=175.0
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEeccCCCHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD-SQENGWLLDGYPRSLSQAT 80 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~-~~~~G~ILDGfPrt~~Qa~ 80 (204)
|+.+|++||++|||+|++||+++..+|++|..+++++++|++|||++++.+|.++|.+.. +..+||||||||||..||+
T Consensus 46 a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~ 125 (261)
T PLN02459 46 ASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAE 125 (261)
T ss_pred HHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCceEEEeCCCCCHHHHH
Confidence 678999999999999999999999999999999999999999999999999999998752 3478999999999999999
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceeccc-------------CCCCCc--hHhhhhccCCCCCcHHH
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVK-------------YSPPET--DEIAARLTKRFDDTEEK 145 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~-------------~~pp~~--~~~~~rl~~r~dd~~e~ 145 (204)
.|+.. ..|+.||+|+||++++++|+.+|++||.||+.||+. ++||.. +.+.++|.+|.||+++.
T Consensus 126 ~Le~~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~ 204 (261)
T PLN02459 126 ILEGV-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEV 204 (261)
T ss_pred HHHhc-CCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCCcccccccccCCCCCHHH
Confidence 99986 478999999999999999999999999999999995 366643 24557899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHHHHHHhh
Q 028770 146 VKLRLKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQ 194 (204)
Q Consensus 146 i~~Rl~~y~~~~~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~~~~~ 194 (204)
+++|+..|++++.||++||.+ .++.|||++++++||++|.++|.--=..
T Consensus 205 i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~~ 255 (261)
T PLN02459 205 VKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDED 255 (261)
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhhh
Confidence 999999999999999999984 6999999999999999999998754433
No 3
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=3.2e-43 Score=281.01 Aligned_cols=187 Identities=27% Similarity=0.484 Sum_probs=172.7
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
++.+|++||+.|||+|+++|+++..+|+.|..+++++++|.++||+++++++.++|.+.++ .+||||||||||..||+.
T Consensus 17 a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~-~~g~ilDGfPR~~~Qa~~ 95 (211)
T PRK14526 17 AKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN-NDNFILDGFPRNINQAKA 95 (211)
T ss_pred HHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc-cCcEEEECCCCCHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999998765 689999999999999999
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhh----hhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~----~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|++.. ....+|+|++|++++++|+.+|++||.||++||+.++||+.++.| .+|.+|.||+++.+++|+..|++++
T Consensus 96 l~~~~-~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t 174 (211)
T PRK14526 96 LDKFL-PNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQT 174 (211)
T ss_pred HHHhc-CCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhh
Confidence 99853 234688899999999999999999999999999999999877654 5789999999999999999999999
Q ss_pred HHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 158 ~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
.||++||.. .++.|||++++++|+++|.+.|.+
T Consensus 175 ~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 175 KPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred hHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 999999974 699999999999999999998764
No 4
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=5.5e-43 Score=279.89 Aligned_cols=187 Identities=48% Similarity=0.756 Sum_probs=174.8
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..||++||++|||+||++|+++..++++|..+++++.+|.++|++++.+++.++|.+..+..+||||||||||..|++.
T Consensus 16 a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~ 95 (210)
T TIGR01351 16 AKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEA 95 (210)
T ss_pred HHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcEEEeCCCCCHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999886555789999999999999999
Q ss_pred HHHcCC-CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHh----hhhccCCCCCcHHHHHHHHHHHHHH
Q 028770 82 LKKYGF-QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEI----AARLTKRFDDTEEKVKLRLKTHHHN 156 (204)
Q Consensus 82 l~~~~~-~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~----~~rl~~r~dd~~e~i~~Rl~~y~~~ 156 (204)
|++... .|+.+|+|++|++++++|+.+|++||.||+.||+.++||..++. .+||.+|.||+++.+++|+..|+++
T Consensus 96 l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~ 175 (210)
T TIGR01351 96 LDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQ 175 (210)
T ss_pred HHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHh
Confidence 998766 79999999999999999999999999999999999999976553 3689999999999999999999999
Q ss_pred HHHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHH
Q 028770 157 VEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 157 ~~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l 188 (204)
+.++++||.+ .++.|||++++++||+.|.+.|
T Consensus 176 ~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 176 TEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred hHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 9999999985 6999999999999999999876
No 5
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=8.9e-43 Score=279.60 Aligned_cols=185 Identities=31% Similarity=0.518 Sum_probs=165.8
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
++.||++||++|||+|+++|+++..+|++|..+++++++|.+|||++++.++.++|.+.+ .+||||||||||..||+.
T Consensus 17 a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~--~~g~iLDGfPRt~~Qa~~ 94 (223)
T PRK14529 17 GALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG--KNGWLLDGFPRNKVQAEK 94 (223)
T ss_pred HHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC--CCcEEEeCCCCCHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999876 789999999999999999
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCC-CCchH-----hhhhccCCCCCc-HHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSP-PETDE-----IAARLTKRFDDT-EEKVKLRL 150 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~p-p~~~~-----~~~rl~~r~dd~-~e~i~~Rl 150 (204)
|++ .+..|+.||+|+||++++++|+.+|++|+.||..||..+.+ |..++ ..++|.+|.||+ +|++++|+
T Consensus 95 l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl 174 (223)
T PRK14529 95 LWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRH 174 (223)
T ss_pred HHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHH
Confidence 874 47889999999999999999999999999998877766654 43322 236799999996 78999999
Q ss_pred HHHHHH---HHHHHHHhhc-------ceeEEeCCCCHHHHHHHHHHHH
Q 028770 151 KTHHHN---VEAVLSLYED-------VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 151 ~~y~~~---~~~v~~~y~~-------~~~~Ida~~~~~~V~~~i~~~l 188 (204)
..|+++ +.++++||.+ .++.|||++++++|++.|.++|
T Consensus 175 ~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 175 DIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred HHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 999998 4588999983 6999999999999999999876
No 6
>PLN02842 nucleotide kinase
Probab=100.00 E-value=1.8e-41 Score=297.31 Aligned_cols=197 Identities=55% Similarity=0.917 Sum_probs=188.3
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|+.||++||++|||+|++||+++..+|++|..+++++.+|+++||+++..++.+++.+..+..+||||||||||..|++.
T Consensus 14 a~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~ILDGfPRt~~Qa~~ 93 (505)
T PLN02842 14 CELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLLDGYPRSFAQAQS 93 (505)
T ss_pred HHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEEeCCCCcHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999987766789999999999999999
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 161 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~ 161 (204)
|++.+..||.||+|+||++++++|+.+|+.||.||.+||+.++||..++++.+|.+|.||+++.+++|+..|++++.++.
T Consensus 94 Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl 173 (505)
T PLN02842 94 LEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAIL 173 (505)
T ss_pred HHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHHHHHHHHHhhhHH
Confidence 99988899999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred HHhhcceeEEeCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 028770 162 SLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSA 198 (204)
Q Consensus 162 ~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~~~~~~~ 198 (204)
++|.+.++.|||++++++|+++|.+.|.+.+.++++.
T Consensus 174 ~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~~~ 210 (505)
T PLN02842 174 STYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDATKM 210 (505)
T ss_pred HhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999988777654
No 7
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=2.5e-41 Score=271.22 Aligned_cols=188 Identities=44% Similarity=0.780 Sum_probs=175.0
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..||++||++|||+||++|+++..+++.|..+++++++|.++|++++..++.++|.+.++ .+||||||||||..|++.
T Consensus 17 a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~-~~g~VlDGfPr~~~qa~~ 95 (215)
T PRK00279 17 AKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC-KNGFLLDGFPRTIPQAEA 95 (215)
T ss_pred HHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc-cCCEEEecCCCCHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999998776 459999999999999999
Q ss_pred HH----HcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhh----hhccCCCCCcHHHHHHHHHHH
Q 028770 82 LK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDDTEEKVKLRLKTH 153 (204)
Q Consensus 82 l~----~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~----~rl~~r~dd~~e~i~~Rl~~y 153 (204)
|+ ..+..|+.+|+|+||++++++|+.+|..||.||+.||+.++||+.++.+ .++.+|.||+++.+++|+..|
T Consensus 96 l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y 175 (215)
T PRK00279 96 LDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVY 175 (215)
T ss_pred HHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHH
Confidence 95 3567899999999999999999999999999999999999999877665 458899999999999999999
Q ss_pred HHHHHHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 154 HHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 154 ~~~~~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
++++.++.+||.+ .++.|||++++++||+.|.+.|+.
T Consensus 176 ~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 176 HKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred HHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999985 599999999999999999998864
No 8
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=269.05 Aligned_cols=195 Identities=42% Similarity=0.752 Sum_probs=181.6
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+.++++.|+++||++||++|+++.++|++|.++++++.+|++|||++++.++.+++....| .+||+|||||||..|++.
T Consensus 32 a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~-~~~~ildg~Prt~~qa~~ 110 (235)
T KOG3078|consen 32 APRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRC-QKGFILDGFPRTVQQAEE 110 (235)
T ss_pred CHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccccc-ccccccCCCCcchHHHHH
Confidence 5789999999999999999999999999999999999999999999999988888887756 789999999999999999
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCch---Hhh-hhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD---EIA-ARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~---~~~-~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|..++..||.||.|+||++.+.+|+.+|++||.||+.||+.++||..+ ++. +.|.+|.||++++++.|+..|++++
T Consensus 111 l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~ 190 (235)
T KOG3078|consen 111 LLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQT 190 (235)
T ss_pred HHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCccccHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999874 443 4599999999999999999999999
Q ss_pred HHHHHHhh--cceeEEeCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 028770 158 EAVLSLYE--DVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSA 198 (204)
Q Consensus 158 ~~v~~~y~--~~~~~Ida~~~~~~V~~~i~~~l~~~~~~~~~~ 198 (204)
.|+.+||+ +.+..++|.. .++||..+...+.+.+.+....
T Consensus 191 ~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~~~ 232 (235)
T KOG3078|consen 191 KPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPEREQK 232 (235)
T ss_pred hHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhhhh
Confidence 99999998 4799999999 9999999999999888766543
No 9
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=1.3e-40 Score=268.86 Aligned_cols=185 Identities=30% Similarity=0.540 Sum_probs=165.6
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-CCCCCcEEEeccCCCHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-DSQENGWLLDGYPRSLSQAT 80 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~-~~~~~G~ILDGfPrt~~Qa~ 80 (204)
++.+|++||++|||+|++||++++.+|++|..+++++.+|.+|||+++++++.+++.+. .+...||||||||||..|++
T Consensus 23 a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~~g~iLDGfPRt~~Qa~ 102 (229)
T PTZ00088 23 AEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCK 102 (229)
T ss_pred HHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccCceEEEecCCCCHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999872 23468999999999999999
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceeccc------C-CCCCch-Hhh------hhccCCCCCcHHHH
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVK------Y-SPPETD-EIA------ARLTKRFDDTEEKV 146 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~------~-~pp~~~-~~~------~rl~~r~dd~~e~i 146 (204)
.|++. ..|+.||.|++|++++++|+.+|++||.||++||+. + .||..+ +.| ++|.+|.||+++.+
T Consensus 103 ~l~~~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~~~~~~l~~R~DD~~e~i 181 (229)
T PTZ00088 103 ELGKI-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIV 181 (229)
T ss_pred HHHhc-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccccCCcccccCCCCCCHHHH
Confidence 99886 489999999999999999999999999999999997 3 344322 122 37899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc--c-eeEE---eCCCCHHHHHHHHHHH
Q 028770 147 KLRLKTHHHNVEAVLSLYED--V-TVEV---NGSVNKEDVFAQIDVA 187 (204)
Q Consensus 147 ~~Rl~~y~~~~~~v~~~y~~--~-~~~I---da~~~~~~V~~~i~~~ 187 (204)
++|+..|++++.+|++||.+ + ++.| ||++++++|++.|...
T Consensus 182 ~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 182 AHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 99999999999999999984 6 8777 8999999999998764
No 10
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=253.65 Aligned_cols=165 Identities=36% Similarity=0.643 Sum_probs=153.5
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHc-CChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT 80 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~-~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~ 80 (204)
|.+++++|||+|+|+|||||+++++ +|+.|.+|++++++|.+||.+++..||.++|.+... .+||+||||||+.+|+.
T Consensus 25 C~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~-~~~fLIDGyPR~~~q~~ 103 (195)
T KOG3079|consen 25 CEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSGD-SNGFLIDGYPRNVDQLV 103 (195)
T ss_pred HHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcCC-CCeEEecCCCCChHHHH
Confidence 8999999999999999999999998 999999999999999999999999999999998754 46799999999999999
Q ss_pred HHHHcCC-CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHH
Q 028770 81 ALKKYGF-QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA 159 (204)
Q Consensus 81 ~l~~~~~-~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~ 159 (204)
.|++... .|+++++|+|+.+++++|+..|.. -..|.||+.+.+++|+..|++.+.|
T Consensus 104 ~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q-----------------------~~~R~DDn~esikkR~et~~~~t~P 160 (195)
T KOG3079|consen 104 EFERKIQGDPDFVLFFDCPEETMLKRLLHRGQ-----------------------SNSRSDDNEESIKKRLETYNKSTLP 160 (195)
T ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcc-----------------------cCCCCCCchHHHHHHHHHHHHcchH
Confidence 9998644 799999999999999999999963 1248999999999999999999999
Q ss_pred HHHHhhc--ceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 160 VLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 160 v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
|++||+. +++.|||+.++++||.++.+++..
T Consensus 161 vi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 161 VIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 9999985 899999999999999999998875
No 11
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=8.4e-37 Score=256.75 Aligned_cols=173 Identities=36% Similarity=0.585 Sum_probs=157.6
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|..||++||++|||+|||||+++..+++.|..+.+++.+|.+|||++++.+|.++|.+.++ .+||||||||||..|++.
T Consensus 17 a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~-~~G~ILDGFPRt~~QA~~ 95 (333)
T PRK13808 17 AQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA-ANGFILDGFPRTVPQAEA 95 (333)
T ss_pred HHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc-cCCEEEeCCCCCHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999998876 689999999999999998
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCC-CCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPV-TGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHN 156 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~-~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~ 156 (204)
|+. .++.||+||+|+||++++++|+.+|+.+.. +| ...|.||+++.+.+|+..|+++
T Consensus 96 L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg------------------~~~R~DD~~E~i~kRL~~Y~~~ 157 (333)
T PRK13808 96 LDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARG------------------EEVRADDTPEVLAKRLASYRAQ 157 (333)
T ss_pred HHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccC------------------CccCCCCCHHHHHHHHHHHHHH
Confidence 864 467999999999999999999999875421 11 1358899999999999999999
Q ss_pred HHHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHHHHHHh
Q 028770 157 VEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 157 ~~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~~~~ 193 (204)
+.||++||.+ .++.|||++++++|+++|+..|...+.
T Consensus 158 t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 158 TEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred hHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 9999999986 699999999999999999999998775
No 12
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=1.1e-36 Score=244.25 Aligned_cols=183 Identities=40% Similarity=0.678 Sum_probs=167.2
Q ss_pred chhhhhHhCCceeCHHHHHHHHH-----HcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEI-----AAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSL 76 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i-----~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~ 76 (204)
+..||++||++||++|+++|+++ ...++.|. +++++.+|.++|++++..++...+.+ ..||||||||||.
T Consensus 20 ~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~----~~~~IldG~pr~~ 94 (215)
T PRK14530 20 SSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD----ADGFVLDGYPRNL 94 (215)
T ss_pred HHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc----CCCEEEcCCCCCH
Confidence 56789999999999999999988 34566776 78899999999999999999988764 3599999999999
Q ss_pred HHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhh----hccCCCCCcHHHHHHHHHH
Q 028770 77 SQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RLTKRFDDTEEKVKLRLKT 152 (204)
Q Consensus 77 ~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~----rl~~r~dd~~e~i~~Rl~~ 152 (204)
.|++.|++. ..|+.||+|++|++++++|+.+|+.|+.||+.||..++||..++.++ ||.+|.||+++.+++|+..
T Consensus 95 ~q~~~l~~~-~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~ 173 (215)
T PRK14530 95 EQAEYLESI-TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDV 173 (215)
T ss_pred HHHHHHHHh-cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHH
Confidence 999999875 36999999999999999999999999999999999999998877665 9999999999999999999
Q ss_pred HHHHHHHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 153 HHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 153 y~~~~~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
|++++.+|++||.+ .++.|||++++++||+.|.+.|.+
T Consensus 174 y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 174 FEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred HHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999985 799999999999999999998875
No 13
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=1.5e-34 Score=227.22 Aligned_cols=162 Identities=35% Similarity=0.558 Sum_probs=149.6
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
++.+|++||++|+|+|+++|+++..++++|..++.++.+|.++|++++..++.+++.+.++ .+||||||||||..||+.
T Consensus 18 a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~-~~g~viDG~Pr~~~qa~~ 96 (186)
T PRK14528 18 AKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC-KNGFLLDGFPRTVEQADA 96 (186)
T ss_pred HHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc-cCcEEEeCCCCCHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999998766 579999999999999999
Q ss_pred HHHc----CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKKY----GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~~----~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|+.. +..||.+|+|+||++++++|+.+|..+ .+|.||+++.+++|+..|++.+
T Consensus 97 l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~-----------------------~gr~dd~~e~i~~Rl~~y~~~~ 153 (186)
T PRK14528 97 LDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI-----------------------EGRADDNEATIKNRLDNYNKKT 153 (186)
T ss_pred HHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-----------------------cCCCCCCHHHHHHHHHHHHHHh
Confidence 8753 568999999999999999999999642 3578999999999999999999
Q ss_pred HHHHHHhhc--ceeEEeCCCCHHHHHHHHHHH
Q 028770 158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVA 187 (204)
Q Consensus 158 ~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~ 187 (204)
.||++||++ .++.|||++++++|++.|.+.
T Consensus 154 ~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 154 LPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 999999984 799999999999999999865
No 14
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=2.8e-33 Score=219.40 Aligned_cols=158 Identities=34% Similarity=0.593 Sum_probs=145.9
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|..+|++||++|||+||++|+++..++++|..+++++.+|.++||+++..++.+++.+.. ..||||||||||..|++.
T Consensus 19 ~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~--~~g~ilDGfpr~~~q~~~ 96 (183)
T PRK14531 19 AARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN--SGGWLLDGFPRTVAQAEA 96 (183)
T ss_pred HHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--CCcEEEeCCCCCHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999997653 579999999999999998
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|+. .+..|+.||+|+||++++.+|+.+|. |.||+++.+.+|+..|++.+
T Consensus 97 ~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~---------------------------r~dD~~e~i~~Rl~~y~~~~ 149 (183)
T PRK14531 97 LEPLLEELKQPIEAVVLLELDDAVLIERLLARG---------------------------RADDNEAVIRNRLEVYREKT 149 (183)
T ss_pred HHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---------------------------CCCCCHHHHHHHHHHHHHHH
Confidence 875 46789999999999999999999883 57889999999999999999
Q ss_pred HHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHH
Q 028770 158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 158 ~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l 188 (204)
.|+++||.+ .++.|||++++++|++.|.+.|
T Consensus 150 ~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 150 APLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 999999984 6999999999999999998876
No 15
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=2.6e-33 Score=220.43 Aligned_cols=174 Identities=44% Similarity=0.792 Sum_probs=159.7
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..||++||+.||++++++|+++...++.|..+++++.+|..+|++++..++..+|.+.. ...||||||||+|..|++.
T Consensus 16 a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~-~~~~~vldg~Pr~~~q~~~ 94 (194)
T cd01428 16 AERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD-CKKGFILDGFPRTVDQAEA 94 (194)
T ss_pred HHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc-ccCCEEEeCCCCCHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999998765 3689999999999999999
Q ss_pred HHHcCC---CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 028770 82 LKKYGF---QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE 158 (204)
Q Consensus 82 l~~~~~---~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~ 158 (204)
|++... .|+.+|+|++|++++.+|+..|..|+.||..||+ |..+....+|..|.||+++.+++|+..|++++.
T Consensus 95 l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~----~~~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~ 170 (194)
T cd01428 95 LDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL----GKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTA 170 (194)
T ss_pred HHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc----CCCcccCCccccCCCCCHHHHHHHHHHHHHhHH
Confidence 998654 8999999999999999999999999999999999 333345678889999999999999999999999
Q ss_pred HHHHHhh--cceeEEeCCCCHHHH
Q 028770 159 AVLSLYE--DVTVEVNGSVNKEDV 180 (204)
Q Consensus 159 ~v~~~y~--~~~~~Ida~~~~~~V 180 (204)
++.+||. +.++.|||++++++|
T Consensus 171 ~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 171 PLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHhCCCEEEEECCCCcCcC
Confidence 9999998 579999999998875
No 16
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=1.4e-32 Score=215.85 Aligned_cols=164 Identities=39% Similarity=0.612 Sum_probs=150.3
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
++.||++||++|||+|++||+++..+++.|..+++++..|+++|++++.+++.+++....+ ..||||||||||..|++.
T Consensus 17 a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~vldg~pr~~~q~~~ 95 (188)
T PRK14532 17 AKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA-AGGAIFDGFPRTVAQAEA 95 (188)
T ss_pred HHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc-cCcEEEeCCCCCHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999987765 689999999999999998
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|++ .+..||.+|+|++|++++.+|+.+|..+ ..|.||+++.+.+|+..|..++
T Consensus 96 ~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~-----------------------~~r~dd~~~~~~~Rl~~~~~~~ 152 (188)
T PRK14532 96 LDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE-----------------------QGRPDDNPEVFVTRLDAYNAQT 152 (188)
T ss_pred HHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc-----------------------CCCCCCCHHHHHHHHHHHHHHH
Confidence 763 4788999999999999999999988532 2478899999999999999999
Q ss_pred HHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHHH
Q 028770 158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 158 ~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
.++.++|.+ .++.|||++++++|++.|.+.|.
T Consensus 153 ~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 153 APLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 999999974 68999999999999999998875
No 17
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=100.00 E-value=6.9e-33 Score=210.62 Aligned_cols=132 Identities=48% Similarity=0.843 Sum_probs=119.6
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|.+||++||++|||+|++||+++..+|++|..+++++++|++||++++++++..+|.+. +..+||||||||||..||+.
T Consensus 13 ~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~~g~ildGfPrt~~Qa~~ 91 (151)
T PF00406_consen 13 AKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCNRGFILDGFPRTLEQAEA 91 (151)
T ss_dssp HHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTTTEEEEESB-SSHHHHHH
T ss_pred HHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-cccceeeeeeccccHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999988 44799999999999999999
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|++ .+..|+.||+|+||++++.+|+.+ |+++.+++|+..|++++
T Consensus 92 l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~--------------------------------d~~~~i~~Rl~~y~~~~ 139 (151)
T PF00406_consen 92 LEEILEEEGIPPDLVIFLDCPDETLIERLSQ--------------------------------DNEEVIKKRLEEYRENT 139 (151)
T ss_dssp HHHHHHHTTSEESEEEEEE--HHHHHHHHHT--------------------------------GSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchheeeccccchhhhhhhccc--------------------------------CCHHHHHHHHHHHHHHH
Confidence 998 789999999999999999999864 45789999999999999
Q ss_pred HHHHHHhhc
Q 028770 158 EAVLSLYED 166 (204)
Q Consensus 158 ~~v~~~y~~ 166 (204)
.++.+||++
T Consensus 140 ~~i~~~y~~ 148 (151)
T PF00406_consen 140 EPILDYYKE 148 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999974
No 18
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=1.9e-31 Score=210.18 Aligned_cols=162 Identities=35% Similarity=0.601 Sum_probs=148.2
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..+|++||+.|+|+|+++|+++..++++|..+++++.+|..+|++++..++.+++.+.++ .||||||||+|..|++.
T Consensus 23 a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~--~~~VlDGfpr~~~q~~~ 100 (191)
T PRK14527 23 AERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP--VRVIFDGFPRTLAQAEA 100 (191)
T ss_pred HHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC--CcEEEcCCCCCHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999988654 58999999999999988
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|+. .|..++.||+|+||++++.+|+.+|... .+|.||+++.+.+|+..|++++
T Consensus 101 ~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~-----------------------~~r~dd~~~~~~~R~~~y~~~~ 157 (191)
T PRK14527 101 LDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ-----------------------EGRSDDNEETVRRRQQVYREQT 157 (191)
T ss_pred HHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc-----------------------CCCCCCCHHHHHHHHHHHHHHh
Confidence 764 5678999999999999999999999642 3588999999999999999999
Q ss_pred HHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHH
Q 028770 158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 158 ~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l 188 (204)
.||++||.+ .++.|||++++++|+++|+..|
T Consensus 158 ~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 158 QPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999984 6999999999999999998865
No 19
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=2.4e-31 Score=215.77 Aligned_cols=167 Identities=28% Similarity=0.560 Sum_probs=152.4
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|+.+|++||++|||+||++|+++...++.|..+.+.+.+|+++|++++..++.+++.... .+||||||||||..|+..
T Consensus 60 a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~--~~~~ILDG~Prt~~q~~~ 137 (234)
T PLN02200 60 CEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD--NNKFLIDGFPRTEENRIA 137 (234)
T ss_pred HHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--CCeEEecCCcccHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999998654 479999999999999999
Q ss_pred HHHc-CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHH
Q 028770 82 LKKY-GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 160 (204)
Q Consensus 82 l~~~-~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v 160 (204)
|... +..||.+|+|++|++++++|+.+|+. .|.||+.+.+++|+..|++.+.++
T Consensus 138 l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-------------------------~r~dd~~e~~~~Rl~~y~~~~~pv 192 (234)
T PLN02200 138 FERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-------------------------GRVDDNIDTIKKRLKVFNALNLPV 192 (234)
T ss_pred HHHHhccCCCEEEEEECCHHHHHHHHHcCcC-------------------------CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9764 56899999999999999999998852 367888999999999999999999
Q ss_pred HHHhhc--ceeEEeCCCCHHHHHHHHHHHHHHHHhhh
Q 028770 161 LSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQR 195 (204)
Q Consensus 161 ~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~~~~~~ 195 (204)
++||++ .++.|||++++++|++.|.+.+...+.-|
T Consensus 193 ~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~~~ 229 (234)
T PLN02200 193 IDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEAMK 229 (234)
T ss_pred HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCCcc
Confidence 999974 69999999999999999999998876544
No 20
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=4.7e-31 Score=206.66 Aligned_cols=160 Identities=37% Similarity=0.662 Sum_probs=146.7
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
++.||++||++|+++|+++|+++..+++.|..++.++.+|.++|++++..++.+++.+.++ ..||||||||||..|++.
T Consensus 18 a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~-~~g~vldGfPr~~~q~~~ 96 (184)
T PRK02496 18 AVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA-ANGWILDGFPRKVTQAAF 96 (184)
T ss_pred HHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc-cCCEEEeCCCCCHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999988776 579999999999999988
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|+. .+..|+.+|+|++|++++.+|+..|. |.||+++.+++|+..|++++
T Consensus 97 l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---------------------------~~dd~~~~~~~r~~~y~~~~ 149 (184)
T PRK02496 97 LDELLQEIGQSGERVVNLDVPDDVVVERLLARG---------------------------RKDDTEEVIRRRLEVYREQT 149 (184)
T ss_pred HHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---------------------------CCCCCHHHHHHHHHHHHHHH
Confidence 875 45689999999999999999999873 46778899999999999999
Q ss_pred HHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHHH
Q 028770 158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 158 ~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
.++.++|+. .++.|||++++++|+++|...|.
T Consensus 150 ~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 150 APLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred HHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 999999974 68999999999999999998763
No 21
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.98 E-value=1e-30 Score=204.18 Aligned_cols=162 Identities=30% Similarity=0.573 Sum_probs=146.9
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|..||++||++|||++|++|+++..+++.|..+++++.+|..+|++++..++.+++.+.. .+||||||||||..|++.
T Consensus 16 a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~--~~~~vlDg~p~~~~q~~~ 93 (183)
T TIGR01359 16 CAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG--SKKFLIDGFPRNEENLEA 93 (183)
T ss_pred HHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC--CCcEEEeCCCCCHHHHHH
Confidence 578899999999999999999999889999999999999999999999999999988764 679999999999999998
Q ss_pred HHH---cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 028770 82 LKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE 158 (204)
Q Consensus 82 l~~---~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~ 158 (204)
|.. .+..|+.+|+|++|++++++|+..|... ..|.||+.+.+++|+..|.+++.
T Consensus 94 ~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~-----------------------~~r~dd~~e~~~~r~~~y~~~~~ 150 (183)
T TIGR01359 94 WEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS-----------------------SGRVDDNIESIKKRFRTYNEQTL 150 (183)
T ss_pred HHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc-----------------------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 875 3468999999999999999999988531 24678889999999999999999
Q ss_pred HHHHHhhc--ceeEEeCCCCHHHHHHHHHHHH
Q 028770 159 AVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 159 ~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l 188 (204)
++.++|.. .++.|||++++++|+++|.+.|
T Consensus 151 ~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 151 PVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 99999974 6899999999999999998876
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=3.9e-30 Score=200.33 Aligned_cols=157 Identities=47% Similarity=0.758 Sum_probs=147.9
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..||++|+++|||.|+++|..+...|++|..++.++++|++|||+++..++..++.+.+|.. |||+||||||..|++.
T Consensus 17 A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~-~~I~dg~PR~~~qa~~ 95 (178)
T COG0563 17 AKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA-GFILDGFPRTLCQARA 95 (178)
T ss_pred HHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC-eEEEeCCCCcHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999999988765 9999999999999999
Q ss_pred HHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 82 l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
|.+ .|..++.++.++++++.++.|+.+|.. |.||+++.+++|+..|++.+
T Consensus 96 l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--------------------------r~dd~~~~~~~R~~~y~~~~ 149 (178)
T COG0563 96 LKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--------------------------REDDNEETVKKRLKVYHEQT 149 (178)
T ss_pred HHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--------------------------cccCCHHHHHHHHHHHHhcc
Confidence 985 378899999999999999999999852 78999999999999999999
Q ss_pred HHHHHHhhcceeEEeCCCCHHHHHHHHHHHH
Q 028770 158 EAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 158 ~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l 188 (204)
.|+..||. +.|||.+++++|++++.+.+
T Consensus 150 ~pli~~y~---~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 150 APLIEYYS---VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred cchhhhhe---eeccCCCCHHHHHHHHHHhh
Confidence 99999998 89999999999999998765
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=5.8e-27 Score=183.26 Aligned_cols=166 Identities=35% Similarity=0.593 Sum_probs=148.9
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|..++++||+.|+++|+++|+++...++.|..++..+.+|.++|++.+..++.+++........|||+||||++..|++.
T Consensus 20 ~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~dg~~~~~~q~~~ 99 (188)
T TIGR01360 20 CEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEE 99 (188)
T ss_pred HHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeEEEeCCCCCHHHHHH
Confidence 56788999999999999999998888899999999999999999999999999888765445789999999999999999
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 161 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~ 161 (204)
|......|+.+|+|++|.+++.+|+..|.. ...|.|++++.+.+|+..|.++..++.
T Consensus 100 ~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~-----------------------~~~r~d~~~~~~~~r~~~~~~~~~~~~ 156 (188)
T TIGR01360 100 FERRIGPPTLVLYFDCSEDTMVKRLLKRAE-----------------------TSGRVDDNEKTIKKRLETYYKATEPVI 156 (188)
T ss_pred HHHcCCCCCEEEEEECCHHHHHHHHHcccc-----------------------cCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 988767899999999999999999998852 124788899999999999999999999
Q ss_pred HHhhc--ceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 162 SLYED--VTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 162 ~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
++|.. .++.|||++++++|++.|...|..
T Consensus 157 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 157 AYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 99974 788999999999999999998864
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=99.56 E-value=1e-13 Score=110.94 Aligned_cols=137 Identities=23% Similarity=0.403 Sum_probs=103.2
Q ss_pred cCChhHHHHHHHHH--cCCCCCHHHHHHHH--HHH------hcCCCCCCCc-EEE-----------eccCCCHHH--HHH
Q 028770 26 AGSENGKRAKEHME--KGQLVPDEIVVTMV--KER------LSQPDSQENG-WLL-----------DGYPRSLSQ--ATA 81 (204)
Q Consensus 26 ~~t~~g~~i~~~l~--~G~~vpde~i~~ll--~~~------l~~~~~~~~G-~IL-----------DGfPrt~~Q--a~~ 81 (204)
.+|++|+.|++++. .|...|+..+..++ .++ +..+.. .+| +|| +||||+..+ +..
T Consensus 46 ~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~~~~~i~~~l-~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~ 124 (212)
T PRK13974 46 GGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQHVSKIIRPAL-ENGDWVISDRFSGSTLAYQGYGRGLDLELIKN 124 (212)
T ss_pred CCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEcCchhhHHHHccccCCCCHHHHHH
Confidence 36789999999996 35567887776666 333 111211 345 788 999997643 555
Q ss_pred HHH---cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 028770 82 LKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE 158 (204)
Q Consensus 82 l~~---~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~ 158 (204)
++. .+..||.+|+|+||++++.+|+.+|. || .+.+|...|.+.+.
T Consensus 125 l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~-----------------------------dD---~~e~~~~~y~~~v~ 172 (212)
T PRK13974 125 LESIATQGLSPDLTFFLEISVEESIRRRKNRK-----------------------------PD---RIEAEGIEFLERVA 172 (212)
T ss_pred HHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc-----------------------------cC---chhhhhHHHHHHHH
Confidence 553 35689999999999999999987662 22 24566788999999
Q ss_pred HHHHHhhc--ceeEEeCCCCHHHHHHHHHHHHHHHHhhh
Q 028770 159 AVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQR 195 (204)
Q Consensus 159 ~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l~~~~~~~ 195 (204)
++..+|.+ .++.|||++++++|+++|.++|.+.+..|
T Consensus 173 ~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~~~ 211 (212)
T PRK13974 173 EGFALIAEERNWKVISADQSIETISNEIKETLLNNFSNK 211 (212)
T ss_pred HHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHhhc
Confidence 99888863 79999999999999999999999876554
No 25
>PRK13973 thymidylate kinase; Provisional
Probab=99.44 E-value=3.8e-12 Score=101.98 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=113.9
Q ss_pred chhhhhHh---CCceeCH--------HHHHHHHHHcC--ChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCC-CCCcE
Q 028770 2 KSSSYMQY---GLVHIAA--------GDLLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS-QENGW 67 (204)
Q Consensus 2 ~~~~a~~~---gl~~is~--------~dllr~~i~~~--t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~-~~~G~ 67 (204)
+..+++.+ |+.++.+ |++||+.+... ...+..+..++-.+ .+.+.+..++...+.+... ....|
T Consensus 20 ~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~~~i~~~l~~g~~Vi~DRy 97 (213)
T PRK13973 20 IRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVEEVIRPALARGKIVLCDRF 97 (213)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHHHCCCEEEEcch
Confidence 34566777 8888866 88999887642 33445555555554 3556777777777776431 02233
Q ss_pred -----EEeccCCCH--HHHHHHHHc---CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccC
Q 028770 68 -----LLDGYPRSL--SQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK 137 (204)
Q Consensus 68 -----ILDGfPrt~--~Qa~~l~~~---~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~ 137 (204)
+.+|+|++. .++..|+.. +..||++|+|+||++++.+|+..|..+. . ..
T Consensus 98 ~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~-~--------------------~~ 156 (213)
T PRK13973 98 IDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSD-T--------------------PD 156 (213)
T ss_pred hhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCC-c--------------------cC
Confidence 377787754 477777642 3689999999999999999999885321 0 01
Q ss_pred CCC-CcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHHh
Q 028770 138 RFD-DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 138 r~d-d~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~~ 193 (204)
|.+ +..+.++++...|.+.. +.|...++.|||++++++|+++|..++.+.+.
T Consensus 157 ~~e~~~~~~~~~~~~~y~~l~----~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 157 RFEKEDLAFHEKRREAFLQIA----AQEPERCVVIDATASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred chhhchHHHHHHHHHHHHHHH----HhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 333 34566677777887644 45666789999999999999999999987665
No 26
>PRK01184 hypothetical protein; Provisional
Probab=99.40 E-value=5.1e-11 Score=93.01 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=108.2
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHc-CC-----hhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAA-GS-----ENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSL 76 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~-~t-----~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~ 76 (204)
+++++++|++++++||++|+++.. +. .+|..+.+... .+.+ +++..++...+... ....+|+||| |+.
T Consensus 18 a~~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~~~~-~~~~~~~~~~i~~~--~~~~vvidg~-r~~ 91 (184)
T PRK01184 18 SKIAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--ELGM-DAVAKRTVPKIREK--GDEVVVIDGV-RGD 91 (184)
T ss_pred HHHHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--HHCh-HHHHHHHHHHHHhc--CCCcEEEeCC-CCH
Confidence 458899999999999999999853 22 36777766554 2333 45555655666653 2467999999 899
Q ss_pred HHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCC--cHHHHHHHHHHHH
Q 028770 77 SQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD--TEEKVKLRLKTHH 154 (204)
Q Consensus 77 ~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd--~~e~i~~Rl~~y~ 154 (204)
.|++.+.+....+..+|+++||+++..+|+..|.. .+| +.+.+.+|.....
T Consensus 92 ~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~---------------------------~~d~~~~~~~~~r~~~q~ 144 (184)
T PRK01184 92 AEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGR---------------------------SDDPKSWEELEERDEREL 144 (184)
T ss_pred HHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCC---------------------------CCChhhHHHHHHHHHHHh
Confidence 99999877533467899999999999999988741 122 3556666665432
Q ss_pred HHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHHh
Q 028770 155 HNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 155 ~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~~ 193 (204)
. .++.+.+..-=+.||.+.+.+++.+++.+.+...+.
T Consensus 145 ~--~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 145 S--WGIGEVIALADYMIVNDSTLEEFRARVRKLLERILR 181 (184)
T ss_pred c--cCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 1 112233332223567788999999999998876654
No 27
>PRK08356 hypothetical protein; Provisional
Probab=99.28 E-value=7.3e-11 Score=93.21 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=75.7
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHc----CC---hhHHHH----HHHHHcCCCCCH----HHHHHHHHHHhcCCCCCCCc
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAA----GS---ENGKRA----KEHMEKGQLVPD----EIVVTMVKERLSQPDSQENG 66 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~----~t---~~g~~i----~~~l~~G~~vpd----e~i~~ll~~~l~~~~~~~~G 66 (204)
|..| +++|++|||+|+.++..... .+ +.+... ..+++.|+++|+ +++++++.+++.. + ..
T Consensus 22 a~~l-~~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~~~~~~~~~~--~--~~ 96 (195)
T PRK08356 22 AKFF-EEKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILIRLAVDKKRN--C--KN 96 (195)
T ss_pred HHHH-HHCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHHHHHHHHhcc--C--Ce
Confidence 3445 46899999999966543332 22 334333 577888999995 7888888777743 2 25
Q ss_pred EEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 67 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 67 ~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
|+|||| |+..|++.|...+ ..+|+|++|++++.+|+..|.
T Consensus 97 ividG~-r~~~q~~~l~~~~---~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 97 IAIDGV-RSRGEVEAIKRMG---GKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred EEEcCc-CCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHhcC
Confidence 999999 9999999998752 479999999999999998885
No 28
>PRK03839 putative kinase; Provisional
Probab=98.96 E-value=1.5e-08 Score=78.82 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=83.7
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..||+++|+.|+++++++++. .++..... .| +.....+...+.+.. ...+||+||++...
T Consensus 17 ~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~---~~-----~~~~~~l~~~~~~~~-~~~~vIidG~~~~l----- 77 (180)
T PRK03839 17 SKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD---EM-----EIDFDKLAYFIEEEF-KEKNVVLDGHLSHL----- 77 (180)
T ss_pred HHHHHHHhCCcEEehhhhhhhc-----CCcccCCh---hh-----hcCHHHHHHHHHHhc-cCCCEEEEeccccc-----
Confidence 4678999999999999998763 12211110 11 122334444443322 24579999986431
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 161 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~ 161 (204)
..|+.+|+|+++.+++.+|+..|... +.+ ..+.+..++. + ..+.
T Consensus 78 -----~~~~~vi~L~~~~~~~~~Rl~~R~~~-------------------------~~~-~~~~~~~~~~---~--~~~~ 121 (180)
T PRK03839 78 -----LPVDYVIVLRAHPKIIKERLKERGYS-------------------------KKK-ILENVEAELV---D--VCLC 121 (180)
T ss_pred -----cCCCEEEEEECCHHHHHHHHHHcCCC-------------------------HHH-HHHHHHHHHH---H--HHHH
Confidence 35899999999999999999877421 000 0011111111 1 1233
Q ss_pred HHhh--cceeEEeCC-CCHHHHHHHHHHHHHHH
Q 028770 162 SLYE--DVTVEVNGS-VNKEDVFAQIDVALTNL 191 (204)
Q Consensus 162 ~~y~--~~~~~Ida~-~~~~~V~~~i~~~l~~~ 191 (204)
+.|. ..++.||++ .++++|++.|.+.|.+-
T Consensus 122 ~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 122 EALEEKEKVIEVDTTGKTPEEVVEEILELIKSG 154 (180)
T ss_pred HHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 4453 468899997 69999999999988754
No 29
>PRK06217 hypothetical protein; Validated
Probab=98.89 E-value=3.1e-08 Score=77.41 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=94.2
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..|++++|++|++.+++++.. .+++.+ ...|++....++.+.+.. ..+|||||+|... .+.
T Consensus 18 a~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~~vi~G~~~~~--~~~ 79 (183)
T PRK06217 18 GAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLRP----REGWVLSGSALGW--GDP 79 (183)
T ss_pred HHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHhc----CCCEEEEccHHHH--HHH
Confidence 4678899999999999998742 222211 124666666666666643 3579999998653 222
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHH------
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH------ 155 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~------ 155 (204)
+. ..+|.+|+|++|.++++.|+..|...+ .|+ |+.. ....+.....+.++...|..
T Consensus 80 ~~---~~~d~~i~Ld~~~~~~~~Rl~~R~~~~-~~~-------~~~~-------~~~~e~~~~~~~~~~~~~~~~~~~~~ 141 (183)
T PRK06217 80 LE---PLFDLVVFLTIPPELRLERLRLREFQR-YGN-------RILP-------GGDMHKASLEFLEWAASYDTAGPEGR 141 (183)
T ss_pred HH---hhCCEEEEEECCHHHHHHHHHcCcccc-cCc-------ccCC-------CCCHHHHHHHHHHHHHhccCCCCCcc
Confidence 22 247899999999999999999986432 111 0000 00000111234444444432
Q ss_pred HHHHHHHHhh---cceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 156 NVEAVLSLYE---DVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 156 ~~~~v~~~y~---~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
.......++. ..++.+++..+++++.+.|.+.|.+
T Consensus 142 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 142 SLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred cHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 2222222333 4688899999999999999998865
No 30
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.87 E-value=5.2e-07 Score=72.00 Aligned_cols=141 Identities=22% Similarity=0.389 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHcC-CCCCHHHHHHHH-HHHhcC------C-CCCCCcEEEeccCCC-HH-HH----------HHHHHc
Q 028770 27 GSENGKRAKEHMEKG-QLVPDEIVVTMV-KERLSQ------P-DSQENGWLLDGYPRS-LS-QA----------TALKKY 85 (204)
Q Consensus 27 ~t~~g~~i~~~l~~G-~~vpde~i~~ll-~~~l~~------~-~~~~~G~ILDGfPrt-~~-Qa----------~~l~~~ 85 (204)
+|++|+.|++.+.++ ..+.+....-|. .+|..+ + .....-+|.|.|=-+ ++ |. ..+.+.
T Consensus 42 ~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~ 121 (208)
T COG0125 42 GTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEF 121 (208)
T ss_pred CChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHh
Confidence 588999999999987 444443332222 222221 1 111223566887443 22 42 223233
Q ss_pred ---CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 028770 86 ---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS 162 (204)
Q Consensus 86 ---~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~ 162 (204)
+..||.+|+|++|++++++|+.+|+... .|.+.....+.+|.. +....+.+
T Consensus 122 ~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~-----------------------~r~E~~~~~f~~kvr---~~Y~~la~ 175 (208)
T COG0125 122 APGGLKPDLTLYLDVPPEVALERIRKRGELR-----------------------DRFEKEDDEFLEKVR---EGYLELAA 175 (208)
T ss_pred ccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc-----------------------chhhhHHHHHHHHHH---HHHHHHHh
Confidence 4489999999999999999999986420 111111112333332 22233444
Q ss_pred HhhcceeEEeCCCCHHHHHHHHHHHHHHHHh
Q 028770 163 LYEDVTVEVNGSVNKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 163 ~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~~ 193 (204)
.+.+.+++|||++++++|.++|.+++.+.+.
T Consensus 176 ~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 176 KFPERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred hCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence 4556799999999999999999999988764
No 31
>PRK13975 thymidylate kinase; Provisional
Probab=98.74 E-value=6.2e-07 Score=70.41 Aligned_cols=139 Identities=18% Similarity=0.254 Sum_probs=83.1
Q ss_pred CChhHHHHHHHHHcCCCCCHHHHHHHH-HHHhcC-----CCCCCCcEEEeccCCCH-H-H---------HHHHHHcCCCC
Q 028770 27 GSENGKRAKEHMEKGQLVPDEIVVTMV-KERLSQ-----PDSQENGWLLDGYPRSL-S-Q---------ATALKKYGFQP 89 (204)
Q Consensus 27 ~t~~g~~i~~~l~~G~~vpde~i~~ll-~~~l~~-----~~~~~~G~ILDGfPrt~-~-Q---------a~~l~~~~~~p 89 (204)
++.+|..+++.+..+. +++..+..+. ..+... +....+++|+|+|+.+- . | ...+......|
T Consensus 36 ~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i~~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~p 114 (196)
T PRK13975 36 DGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEIEEDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKP 114 (196)
T ss_pred CChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCC
Confidence 3567888888877653 3333222222 122111 01113568999987542 1 1 12233333579
Q ss_pred CEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhh-cce
Q 028770 90 DLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE-DVT 168 (204)
Q Consensus 90 ~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~-~~~ 168 (204)
|.+|+|++|.+++.+|+..|..+ ..++.+...+....|.+... ...++. ..+
T Consensus 115 d~vi~L~~~~e~~~~Rl~~r~~~--------------------------~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~ 167 (196)
T PRK13975 115 DLVFLLDVDIEEALKRMETRDKE--------------------------IFEKKEFLKKVQEKYLELAN-NEKFMPKYGF 167 (196)
T ss_pred CEEEEEcCCHHHHHHHHhccCcc--------------------------ccchHHHHHHHHHHHHHHHh-hcccCCcCCE
Confidence 99999999999999999877410 01123344444456655444 222232 358
Q ss_pred eEEeCC-CCHHHHHHHHHHHHHHHHh
Q 028770 169 VEVNGS-VNKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 169 ~~Ida~-~~~~~V~~~i~~~l~~~~~ 193 (204)
+.||++ .++++|++.|.+.|.+.++
T Consensus 168 ~~Id~~~~~~eev~~~I~~~i~~~~~ 193 (196)
T PRK13975 168 IVIDTTNKSIEEVFNEILNKIKDKIP 193 (196)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 999996 8999999999998877654
No 32
>PLN02924 thymidylate kinase
Probab=98.64 E-value=9.4e-07 Score=71.21 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=80.9
Q ss_pred cCChhHHHHHHHHHcCCCCCHHHHHHHH-HHHhcCC------CCCCCcEEEeccCCCH-----------HHHHHHHHcCC
Q 028770 26 AGSENGKRAKEHMEKGQLVPDEIVVTMV-KERLSQP------DSQENGWLLDGYPRSL-----------SQATALKKYGF 87 (204)
Q Consensus 26 ~~t~~g~~i~~~l~~G~~vpde~i~~ll-~~~l~~~------~~~~~G~ILDGfPrt~-----------~Qa~~l~~~~~ 87 (204)
.+|++|+.+++++..+..+++....-+. ..+..+. -.....+|.|.|.-+. +....+.....
T Consensus 55 ~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~ 134 (220)
T PLN02924 55 RTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLP 134 (220)
T ss_pred CCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCC
Confidence 3588999999999877656554332111 1222111 0123457889997632 22233333445
Q ss_pred CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHH-HHHHHHHHHHHHhhc
Q 028770 88 QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK-THHHNVEAVLSLYED 166 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~-~y~~~~~~v~~~y~~ 166 (204)
.||++|+|++|++++.+|...+ . + |.+ . ..+.+|+. .|.+.. ..
T Consensus 135 ~PDlvi~Ld~~~~~a~~R~~~~-~---------------------~----~~E-~-~~~~~rv~~~Y~~la-------~~ 179 (220)
T PLN02924 135 APDLVLYLDISPEEAAERGGYG-G---------------------E----RYE-K-LEFQKKVAKRFQTLR-------DS 179 (220)
T ss_pred CCCEEEEEeCCHHHHHHHhccC-c---------------------c----ccc-c-HHHHHHHHHHHHHHh-------hc
Confidence 7999999999999999985321 0 0 111 1 12333333 232221 13
Q ss_pred ceeEEeCCCCHHHHHHHHHHHHHHHHh
Q 028770 167 VTVEVNGSVNKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 167 ~~~~Ida~~~~~~V~~~i~~~l~~~~~ 193 (204)
.++.|||++++++|+++|...+.+.+.
T Consensus 180 ~~~vIDa~~sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 180 SWKIIDASQSIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999988665
No 33
>PRK08233 hypothetical protein; Provisional
Probab=98.64 E-value=9.1e-08 Score=74.04 Aligned_cols=152 Identities=15% Similarity=0.199 Sum_probs=90.0
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCC-CCCcEEEeccCCCHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS-QENGWLLDGYPRSLSQAT 80 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~-~~~G~ILDGfPrt~~Qa~ 80 (204)
+.+|++.++..++...|..+... ....+.+.+..|... +......+.+.+..... ...+||+.+||+.....+
T Consensus 20 a~~L~~~l~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~vivd~~~~~~~~~ 93 (182)
T PRK08233 20 TERLTHKLKNSKALYFDRYDFDN-----CPEDICKWIDKGANY-SEWVLTPLIKDIQELIAKSNVDYIIVDYPFAYLNSE 93 (182)
T ss_pred HHHHHhhCCCCceEEECCEEccc-----CchhhhhhhhccCCh-hhhhhHHHHHHHHHHHcCCCceEEEEeeehhhccHH
Confidence 45677777655555555554311 112344555555554 33344444444432211 123677777787644332
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHH
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 160 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v 160 (204)
+. ..+|.+|+|++|.+++++|+..|.. .+++.+.+.+++..|.....+.
T Consensus 94 -~~---~~~d~~i~l~~~~~~~~~R~~~R~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 142 (182)
T PRK08233 94 -MR---QFIDVTIFIDTPLDIAMARRILRDF---------------------------KEDTGNEIHNDLKHYLNYARPL 142 (182)
T ss_pred -HH---HHcCEEEEEcCCHHHHHHHHHHHHh---------------------------hhccccchhhHHHHHHHHHHHH
Confidence 22 2478999999999999999877742 0112234556677776665554
Q ss_pred HHH-hh----cceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 161 LSL-YE----DVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 161 ~~~-y~----~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
... +. ...+.||++.++++++++|...|..
T Consensus 143 y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 143 YLEALHTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred HHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 211 11 2357799999999999999998874
No 34
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.62 E-value=2.8e-06 Score=66.99 Aligned_cols=138 Identities=19% Similarity=0.269 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHc--CCCCCHHHHHHHHHHH-------hcCCCCCCCcEEEeccCCCH------------HHHHHHHHc
Q 028770 27 GSENGKRAKEHMEK--GQLVPDEIVVTMVKER-------LSQPDSQENGWLLDGYPRSL------------SQATALKKY 85 (204)
Q Consensus 27 ~t~~g~~i~~~l~~--G~~vpde~i~~ll~~~-------l~~~~~~~~G~ILDGfPrt~------------~Qa~~l~~~ 85 (204)
++..|..+++.+.. +...|.....-.+..+ +.........+|+|.|+-+. .+...+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~ 121 (205)
T PRK00698 42 GTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDF 121 (205)
T ss_pred CChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHH
Confidence 35678888888773 3333322221111111 11111123457889765542 222233322
Q ss_pred ---CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHH-HHHHHHHHHH
Q 028770 86 ---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK-THHHNVEAVL 161 (204)
Q Consensus 86 ---~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~-~y~~~~~~v~ 161 (204)
...||.+|+|++|++++.+|+..|+.. .+.++....+.+|+. .|. ++.
T Consensus 122 ~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~------------------------~~~~~~~~~~~~~~~~~y~----~~~ 173 (205)
T PRK00698 122 ALGGFRPDLTLYLDVPPEVGLARIRARGEL------------------------DRIEQEGLDFFERVREGYL----ELA 173 (205)
T ss_pred HhCCCCCCEEEEEeCCHHHHHHHHHhcCCc------------------------chhhhhhHHHHHHHHHHHH----HHH
Confidence 257999999999999999999988520 011111223344444 233 223
Q ss_pred HHhhcceeEEeCCCCHHHHHHHHHHHHHHHH
Q 028770 162 SLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 162 ~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~ 192 (204)
+.+...++.||+++++++|+++|.+++.+.+
T Consensus 174 ~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 174 EKEPERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred HhCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 3444578999999999999999999987754
No 35
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.61 E-value=1.2e-07 Score=79.51 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=89.5
Q ss_pred chhhhhHh-CCceeCHHHHHHHHHHcCChhHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHH
Q 028770 2 KSSSYMQY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-LVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA 79 (204)
Q Consensus 2 ~~~~a~~~-gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~-~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa 79 (204)
+..+++++ ++.+||.++ +|..+....+.|.. .+..++. .+ .++...++...+.. ..++|||++|.+..|.
T Consensus 19 a~~L~~~~~~~~~l~~D~-~r~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~l~~----g~~vIid~~~~~~~~~ 90 (300)
T PHA02530 19 AREFAAKNPKAVNVNRDD-LRQSLFGHGEWGEY--KFTKEKEDLV-TKAQEAAALAALKS----GKSVIISDTNLNPERR 90 (300)
T ss_pred HHHHHHHCCCCEEEeccH-HHHHhcCCCccccc--ccChHHHHHH-HHHHHHHHHHHHHc----CCeEEEeCCCCCHHHH
Confidence 34567778 999999855 56665433222110 0000000 01 12333444444432 3579999999999988
Q ss_pred HHHHH----cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHH---HHHHH
Q 028770 80 TALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVK---LRLKT 152 (204)
Q Consensus 80 ~~l~~----~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~---~Rl~~ 152 (204)
+.+.. .+..+ .+|+|++|.+++.+|...|..+ +...+.++ +|++.
T Consensus 91 ~~~~~la~~~~~~~-~~v~l~~~~e~~~~R~~~R~~~---------------------------~~~~~~i~~~~~~~~~ 142 (300)
T PHA02530 91 RKWKELAKELGAEF-EEKVFDVPVEELVKRNRKRGER---------------------------AVPEDVLRSMFKQMKE 142 (300)
T ss_pred HHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHccCcC---------------------------CCCHHHHHHHHHHHHH
Confidence 87754 23322 3799999999999999998422 12344455 88999
Q ss_pred HHHHHHHHHHHhhc--ceeEEeCCCCHHH
Q 028770 153 HHHNVEAVLSLYED--VTVEVNGSVNKED 179 (204)
Q Consensus 153 y~~~~~~v~~~y~~--~~~~Ida~~~~~~ 179 (204)
|...+.|+...|.. ..+.+|.++++.+
T Consensus 143 ~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 143 YRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred hcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 99999999877763 4677777777654
No 36
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.54 E-value=2.1e-06 Score=67.00 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=73.1
Q ss_pred CChhHHHHHHHHHcCCCCCHHHHHHHH-HHH-------hcCCCCCCCcEEEeccCC-C-----------HHHHHHHHHcC
Q 028770 27 GSENGKRAKEHMEKGQLVPDEIVVTMV-KER-------LSQPDSQENGWLLDGYPR-S-----------LSQATALKKYG 86 (204)
Q Consensus 27 ~t~~g~~i~~~l~~G~~vpde~i~~ll-~~~-------l~~~~~~~~G~ILDGfPr-t-----------~~Qa~~l~~~~ 86 (204)
.+++|..+++++..+.........-+. ..+ +...-....-+|.|.|-- + ......+....
T Consensus 35 ~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~ 114 (186)
T PF02223_consen 35 STPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDI 114 (186)
T ss_dssp SSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHh
Confidence 467889999988844444443222221 111 110001123467787632 1 22333333322
Q ss_pred C--CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 028770 87 F--QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 164 (204)
Q Consensus 87 ~--~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y 164 (204)
. .||++|+|++|++++.+|+..|... .+.+.....+ +..+++....+.+ +
T Consensus 115 ~~~~PDl~~~Ldv~pe~~~~R~~~r~~~------------------------~~~~~~~~~~---~~~~~~~y~~l~~-~ 166 (186)
T PF02223_consen 115 FLPKPDLTFFLDVDPEEALKRIAKRGEK------------------------DDEEEEDLEY---LRRVREAYLELAK-D 166 (186)
T ss_dssp HTTE-SEEEEEECCHHHHHHHHHHTSST------------------------TTTTTHHHHH---HHHHHHHHHHHHH-T
T ss_pred cCCCCCEEEEEecCHHHHHHHHHcCCcc------------------------chHHHHHHHH---HHHHHHHHHHHHc-C
Confidence 2 8999999999999999999998530 0111111122 2333333444444 5
Q ss_pred hcceeEEeCCCCHHHHHHHH
Q 028770 165 EDVTVEVNGSVNKEDVFAQI 184 (204)
Q Consensus 165 ~~~~~~Ida~~~~~~V~~~i 184 (204)
..+++.|||+.++++|.++|
T Consensus 167 ~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 167 PNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp TTTEEEEETTS-HHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHhhC
Confidence 67899999999999999886
No 37
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=2.7e-06 Score=65.94 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHcCCCCCHHHH-----------HHHHHHHhcCCCCCCCcEEEeccCCC-H--HHHHHHH--------H
Q 028770 27 GSENGKRAKEHMEKGQLVPDEIV-----------VTMVKERLSQPDSQENGWLLDGYPRS-L--SQATALK--------K 84 (204)
Q Consensus 27 ~t~~g~~i~~~l~~G~~vpde~i-----------~~ll~~~l~~~~~~~~G~ILDGfPrt-~--~Qa~~l~--------~ 84 (204)
.|++|+.|..++.+-.-+||+++ +.+|++.+.+ ....|+|.|--+ . .-|+.|. .
T Consensus 45 st~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~i~e~l~k----g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~ 120 (208)
T KOG3327|consen 45 STSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSLIKEKLAK----GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV 120 (208)
T ss_pred cccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHHHHHHHhc----CCeEEEecceecchhhhhhcCCCcchhhCCcc
Confidence 47789999999998888888765 3455555554 234788988442 2 2233322 2
Q ss_pred cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 028770 85 YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY 164 (204)
Q Consensus 85 ~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y 164 (204)
--.+||+|++|+++++++ .|..+++. +| .+ ...++++...+.+... +.-
T Consensus 121 gL~KPDlvlfL~v~p~~~-a~rggfG~---------------------Er----ye--~v~fqekv~~~~q~l~---r~e 169 (208)
T KOG3327|consen 121 GLPKPDLVLFLDVSPEDA-ARRGGFGE---------------------ER----YE--TVAFQEKVLVFFQKLL---RKE 169 (208)
T ss_pred CCCCCCeEEEEeCCHHHH-HHhcCcch---------------------hH----HH--HHHHHHHHHHHHHHHH---hcc
Confidence 235899999999999994 44455431 11 11 2244444443332222 111
Q ss_pred hcceeEEeCCCCHHHHHHHHHHHHHHHHhhh
Q 028770 165 EDVTVEVNGSVNKEDVFAQIDVALTNLLEQR 195 (204)
Q Consensus 165 ~~~~~~Ida~~~~~~V~~~i~~~l~~~~~~~ 195 (204)
...+++|||+.+.++|.++|..++++.+...
T Consensus 170 ~~~~~~vDAs~sve~V~~~V~~i~e~~~~~~ 200 (208)
T KOG3327|consen 170 DLNWHVVDASKSVEKVHQQVRSLVENVLSEP 200 (208)
T ss_pred CCCeEEEecCccHHHHHHHHHHHHHHhccCC
Confidence 1379999999999999999999999888643
No 38
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.51 E-value=7.3e-06 Score=63.91 Aligned_cols=99 Identities=23% Similarity=0.268 Sum_probs=61.6
Q ss_pred CCcEEEeccCCCH------------HHHHHHH---HcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCc
Q 028770 64 ENGWLLDGYPRSL------------SQATALK---KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET 128 (204)
Q Consensus 64 ~~G~ILDGfPrt~------------~Qa~~l~---~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~ 128 (204)
...+|+|.|+-+. .+...+. .....|+.+|+|++|++++.+|+..|.-..
T Consensus 86 ~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--------------- 150 (200)
T cd01672 86 GKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD--------------- 150 (200)
T ss_pred CCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---------------
Confidence 4567888766431 2333332 234579999999999999999999885211
Q ss_pred hHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHH
Q 028770 129 DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 129 ~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
...+....+.+++..+ ..++...+...++.||++.++++++++|...|.
T Consensus 151 ---------~~~~~~~~~~~~~~~~---y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 151 ---------RDEQEGLEFHERVREG---YLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred ---------hhhhhhHHHHHHHHHH---HHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 0001112233333322 222333333468899999999999999988774
No 39
>PRK13949 shikimate kinase; Provisional
Probab=98.33 E-value=2.3e-05 Score=60.50 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=65.3
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEE-e--ccCCCHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLL-D--GYPRSLSQA 79 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~IL-D--GfPrt~~Qa 79 (204)
..+|+.+|++++++++++.+.... .++...+ +.|...-.++-.+++.+ +.. ..+||+ + |+|.+..+.
T Consensus 19 ~~La~~l~~~~id~D~~i~~~~~~--~~~~~~~---~~g~~~fr~~e~~~l~~-l~~----~~~~vis~Ggg~~~~~~~~ 88 (169)
T PRK13949 19 KALARELGLSFIDLDFFIENRFHK--TVGDIFA---ERGEAVFRELERNMLHE-VAE----FEDVVISTGGGAPCFFDNM 88 (169)
T ss_pred HHHHHHcCCCeecccHHHHHHHCc--cHHHHHH---HhCHHHHHHHHHHHHHH-HHh----CCCEEEEcCCcccCCHHHH
Confidence 467889999999999998876432 2233222 23554444555666655 432 246777 3 688888899
Q ss_pred HHHHHcCCCCCEEEEecCCHHHHHHHHhCC
Q 028770 80 TALKKYGFQPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 80 ~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r 109 (204)
+.|.+. +.+|+|++|.+++++|+..+
T Consensus 89 ~~l~~~----~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 89 ELMNAS----GTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred HHHHhC----CeEEEEECCHHHHHHHHhcC
Confidence 988775 36899999999999999753
No 40
>PRK08118 topology modulation protein; Reviewed
Probab=98.30 E-value=1.7e-06 Score=66.72 Aligned_cols=83 Identities=22% Similarity=0.375 Sum_probs=62.2
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEec-cCCCHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDG-YPRSLSQAT 80 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDG-fPrt~~Qa~ 80 (204)
+..|++++|++++++++++... ....++++....++.+.+.+ .+||+|| |+++....
T Consensus 18 ak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~~-----~~wVidG~~~~~~~~~- 75 (167)
T PRK08118 18 ARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVKE-----DEWIIDGNYGGTMDIR- 75 (167)
T ss_pred HHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhcC-----CCEEEeCCcchHHHHH-
Confidence 5678899999999999998631 12356777677777665443 4799999 66666422
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
+. .+|.+|+|++|.++++.|+..|..
T Consensus 76 -l~----~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 76 -LN----AADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred -HH----hCCEEEEEeCCHHHHHHHHHHHHH
Confidence 22 489999999999999999998854
No 41
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.27 E-value=4.3e-05 Score=58.68 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=81.4
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCCCCCcEEE-ec--cCCCHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQENGWLL-DG--YPRSLS 77 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~-G~~vpde~i~~ll~~~l~~~~~~~~G~IL-DG--fPrt~~ 77 (204)
+..+|+++|+++++.+.++.... +..+ .++++. |...=-+.-.+++ ..+. ..++|| .| ++-+..
T Consensus 19 ~~~la~~lg~~~~d~D~~~~~~~--g~~~----~~~~~~~g~~~~~~~e~~~~-~~~~-----~~~~vi~~ggg~vl~~~ 86 (171)
T PRK03731 19 GMALAQALGYRFVDTDQWLQSTS--NMTV----AEIVEREGWAGFRARESAAL-EAVT-----APSTVIATGGGIILTEE 86 (171)
T ss_pred HHHHHHHhCCCEEEccHHHHHHh--CCCH----HHHHHHHCHHHHHHHHHHHH-HHhc-----CCCeEEECCCCccCCHH
Confidence 34678899999999988876643 2222 222221 2100001122333 2222 123444 33 555555
Q ss_pred HHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccC-C-CCCcHHHHHHHHHHHHH
Q 028770 78 QATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK-R-FDDTEEKVKLRLKTHHH 155 (204)
Q Consensus 78 Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~-r-~dd~~e~i~~Rl~~y~~ 155 (204)
..+.+.. .+.+|+|++|.+++.+|+..|..+. + . |. +.. . .++..+.+++|...|.+
T Consensus 87 ~~~~l~~----~~~~v~l~~~~~~~~~Rl~~r~~~~--~-------r-p~-------~~~~~~~~~~~~~~~~r~~~y~~ 145 (171)
T PRK03731 87 NRHFMRN----NGIVIYLCAPVSVLANRLEANPEED--Q-------R-PT-------LTGKPISEEVAEVLAEREALYRE 145 (171)
T ss_pred HHHHHHh----CCEEEEEECCHHHHHHHHccccccc--c-------C-Cc-------CCCCChHHHHHHHHHHHHHHHHH
Confidence 6666654 4579999999999999998763210 0 0 00 000 0 11223344444444433
Q ss_pred HHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 156 NVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 156 ~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
. ..++||+++++++|+++|...+.+
T Consensus 146 ~----------a~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 146 V----------AHHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred h----------CCEEEcCCCCHHHHHHHHHHHHhc
Confidence 1 237899999999999999987753
No 42
>PRK07933 thymidylate kinase; Validated
Probab=98.26 E-value=3.9e-05 Score=61.48 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=50.3
Q ss_pred CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHH-HHHHHHHHHHHHHhhc
Q 028770 88 QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRL-KTHHHNVEAVLSLYED 166 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl-~~y~~~~~~v~~~y~~ 166 (204)
.||++|+|++|++++.+|+..|... ..+. -..|.+.. ..+.+|+ +.|.+.... .+..
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~-~~~~-----------------~~d~~E~~-~~f~~~v~~~Y~~~~~~---~~~~ 189 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQ-DADR-----------------ARDAYERD-DGLQQRTGAVYAELAAQ---GWGG 189 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccc-cCCc-----------------cccccccc-HHHHHHHHHHHHHHHHh---cCCC
Confidence 6999999999999999999887421 0000 00111111 2233333 244443321 1245
Q ss_pred ceeEEeCCCCHHHHHHHHHHHH
Q 028770 167 VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 167 ~~~~Ida~~~~~~V~~~i~~~l 188 (204)
.++.|||++++++|.+.|.+.|
T Consensus 190 ~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 190 PWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred CeEEeCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 43
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.24 E-value=3.2e-05 Score=60.59 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=27.9
Q ss_pred ccCCCHH--HHHHHHHcCC--CCCEEEEecCCHHHHHHHHhCCC
Q 028770 71 GYPRSLS--QATALKKYGF--QPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 71 GfPrt~~--Qa~~l~~~~~--~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
|+|++.. +...+..... .||++|+|++|.+.+++|+..|.
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 106 GGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred cccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 4455433 3344443322 49999999999999999998874
No 44
>PRK13976 thymidylate kinase; Provisional
Probab=98.22 E-value=0.00021 Score=57.16 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=52.3
Q ss_pred CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHH-HHHHHHHHHHHHHh
Q 028770 86 GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRL-KTHHHNVEAVLSLY 164 (204)
Q Consensus 86 ~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl-~~y~~~~~~v~~~y 164 (204)
+..||++|+|++|++++++|+..+++. .... .+.+|+ +.|.+.. +.+
T Consensus 122 ~~~PDl~i~Ldv~~e~a~~Ri~~~~~e---------------------------~~~~-~~l~~v~~~Y~~l~----~~~ 169 (209)
T PRK13976 122 DKYPDITFVLDIDIELSLSRADKNGYE---------------------------FMDL-EFYDKVRKGFREIV----IKN 169 (209)
T ss_pred CCCCCEEEEEeCCHHHHHHHhcccchh---------------------------cccH-HHHHHHHHHHHHHH----HhC
Confidence 347999999999999999998543221 0011 222233 3454332 234
Q ss_pred hcceeEEeC---CCC---HHHHHHHHHHHHHHHHhhh
Q 028770 165 EDVTVEVNG---SVN---KEDVFAQIDVALTNLLEQR 195 (204)
Q Consensus 165 ~~~~~~Ida---~~~---~~~V~~~i~~~l~~~~~~~ 195 (204)
.+.+..||+ +++ +++|.++|.+++.+.+..|
T Consensus 170 ~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~ 206 (209)
T PRK13976 170 PHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDK 206 (209)
T ss_pred CCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 557888998 456 9999999999999888443
No 45
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.15 E-value=6.1e-05 Score=56.72 Aligned_cols=137 Identities=18% Similarity=0.250 Sum_probs=91.4
Q ss_pred CchhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHH
Q 028770 1 MKSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK---GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLS 77 (204)
Q Consensus 1 ~~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~---G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~ 77 (204)
.|+++|+.+|+.+|.+++++++.= +..-.++ --.+.++.+.+.|...|.+ .|.|+|=--..
T Consensus 23 l~~~lae~~~~~~i~isd~vkEn~---------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~-----Gg~IVDyHgCd-- 86 (176)
T KOG3347|consen 23 LAERLAEKTGLEYIEISDLVKENN---------LYEGYDEEYKCHILDEDKVLDELEPLMIE-----GGNIVDYHGCD-- 86 (176)
T ss_pred HHHHHHHHhCCceEehhhHHhhhc---------chhcccccccCccccHHHHHHHHHHHHhc-----CCcEEeecccC--
Confidence 378999999999999999999741 1111111 1246778889999988886 36777631100
Q ss_pred HHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHH--HHHHHH
Q 028770 78 QATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLR--LKTHHH 155 (204)
Q Consensus 78 Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~R--l~~y~~ 155 (204)
.|- .-..|+|++|.||.+++.+|+..|..+. ..++.- -..|..
T Consensus 87 ---~Fp--erwfdlVvVLr~~~s~LY~RL~sRgY~e------------------------------~Ki~eNiecEIfgv 131 (176)
T KOG3347|consen 87 ---FFP--ERWFDLVVVLRTPNSVLYDRLKSRGYSE------------------------------KKIKENIECEIFGV 131 (176)
T ss_pred ---ccc--hhheeEEEEEecCchHHHHHHHHcCCCH------------------------------HHHhhhcchHHHHH
Confidence 010 1246899999999999999999987531 111111 235666
Q ss_pred HHHHHHHHhhc-ceeEEeCCCCHHHHHHHHHHHHH
Q 028770 156 NVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 156 ~~~~v~~~y~~-~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
..+..++.|.. .++...++.. ++....+..++.
T Consensus 132 ~~eea~eSy~~~iV~eL~s~~~-Eem~~ni~ri~~ 165 (176)
T KOG3347|consen 132 VLEEARESYSPKIVVELQSETK-EEMESNISRILN 165 (176)
T ss_pred HHHHHHHHcCCcceeecCcCCH-HHHHHHHHHHHH
Confidence 66677788874 6777877766 777777666554
No 46
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=98.11 E-value=3.9e-07 Score=52.01 Aligned_cols=32 Identities=38% Similarity=0.889 Sum_probs=25.3
Q ss_pred CCcCCCCCceecccCCCCCchHhhh----hccCCCC
Q 028770 109 RRLDPVTGKIYHVKYSPPETDEIAA----RLTKRFD 140 (204)
Q Consensus 109 r~~~~~~g~~y~~~~~pp~~~~~~~----rl~~r~d 140 (204)
|++|+.||++||+.++||..+++++ +|.+|.|
T Consensus 1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~D 36 (36)
T PF05191_consen 1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELVQRKD 36 (36)
T ss_dssp EEEETTTTEEEETTTB--SSTTBCTTTTEBEBEEGG
T ss_pred CcCcCCCCCccccccCCCCCCCccCCCCCeeEeCCC
Confidence 5789999999999999999988765 6777754
No 47
>PRK04040 adenylate kinase; Provisional
Probab=98.08 E-value=0.00027 Score=55.54 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=86.5
Q ss_pred chhhhhHh--CCceeCHHHHHHHHHHcCC--hhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccC--CC
Q 028770 2 KSSSYMQY--GLVHIAAGDLLRAEIAAGS--ENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYP--RS 75 (204)
Q Consensus 2 ~~~~a~~~--gl~~is~~dllr~~i~~~t--~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfP--rt 75 (204)
+..+++++ ++.+++.|+++++.+.... .....+++. ..-...-+-.+..+++.+.. ....+|+||.. +|
T Consensus 19 ~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~~-~~~~~~~~~h~~i~~ 93 (188)
T PRK04040 19 LNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEMA-GEGPVIVDTHATIKT 93 (188)
T ss_pred HHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHhh-cCCCEEEeeeeeecc
Confidence 45677888 8999999999998765432 111222211 00011112223333433321 12348999832 11
Q ss_pred H------HHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHH
Q 028770 76 L------SQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLR 149 (204)
Q Consensus 76 ~------~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~R 149 (204)
. -....+.. ..||.+|+|.+|++++++|..... . -.|..++++.+..+
T Consensus 94 ~~g~~~~~~~~~~~~--l~pd~ii~l~a~p~~i~~Rrl~d~----------------------~--R~R~~es~e~I~~~ 147 (188)
T PRK04040 94 PAGYLPGLPEWVLEE--LNPDVIVLIEADPDEILMRRLRDE----------------------T--RRRDVETEEDIEEH 147 (188)
T ss_pred CCCCcCCCCHHHHhh--cCCCEEEEEeCCHHHHHHHHhccc----------------------c--cCCCCCCHHHHHHH
Confidence 1 13344443 489999999999999988877420 0 02444567777777
Q ss_pred HHHHHHHHHHHHHHhhc--ceeEEeCCCCHHHHHHHHHHHH
Q 028770 150 LKTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 150 l~~y~~~~~~v~~~y~~--~~~~Ida~~~~~~V~~~i~~~l 188 (204)
+..-...... ..+|.+ .++.+|-+...++.++++.++|
T Consensus 148 ~~~a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 148 QEMNRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 6554332222 222323 3455666655888888887765
No 48
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.06 E-value=6.7e-05 Score=59.55 Aligned_cols=146 Identities=18% Similarity=0.275 Sum_probs=88.6
Q ss_pred hHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHH-----HHHHH----------------------HHHHhcC
Q 028770 7 MQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE-----IVVTM----------------------VKERLSQ 59 (204)
Q Consensus 7 ~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde-----~i~~l----------------------l~~~l~~ 59 (204)
..+|+++|+.+++.++.+..+++....+.+.+-.+-+.|+. .+.++ +.+++..
T Consensus 22 ~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~~~le~i~hP~v~~~~~~~~~~ 101 (200)
T PRK14734 22 SSEGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQTALLNAITHPRIAEETARRFNE 101 (200)
T ss_pred HHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 34799999999999999988888777777666444333321 11111 1111111
Q ss_pred CCCCCCcEEEeccCCCHHHHHHHHHcCC--CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccC
Q 028770 60 PDSQENGWLLDGYPRSLSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK 137 (204)
Q Consensus 60 ~~~~~~G~ILDGfPrt~~Qa~~l~~~~~--~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~ 137 (204)
.......+++-- +-.|.+.+. .+|.+|++++|.++.++|+..|+-
T Consensus 102 ~~~~~~~~vv~e-------~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g-------------------------- 148 (200)
T PRK14734 102 ARAQGAKVAVYD-------MPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRG-------------------------- 148 (200)
T ss_pred HHhcCCCEEEEE-------eeceeEcCccccCCeEEEEECCHHHHHHHHHHcCC--------------------------
Confidence 100011222222 222222233 579999999999999999988731
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHH
Q 028770 138 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 138 r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~ 192 (204)
-+++.+..|+..+...... ...--+.||.+.+++++.+++...+...+
T Consensus 149 ---~s~e~~~~ri~~Q~~~~~k----~~~ad~vI~N~g~~e~l~~~v~~~~~~~~ 196 (200)
T PRK14734 149 ---LDEDDARRRIAAQIPDDVR----LKAADIVVDNNGTREQLLAQVDGLIAEIL 196 (200)
T ss_pred ---CCHHHHHHHHHhcCCHHHH----HHhCCEEEECcCCHHHHHHHHHHHHHHHH
Confidence 1346677777655333111 12233579999999999999998886654
No 49
>PRK04182 cytidylate kinase; Provisional
Probab=98.06 E-value=0.00031 Score=53.94 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=56.0
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHc-CChhHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCCCCCcEEEeccCCCHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPD--EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ 78 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~-~t~~g~~i~~~l~~G~~vpd--e~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Q 78 (204)
+..||+++|+++++++++++..... +..... + ...+...|. ..+...+. .+.. ...++|+||-=..
T Consensus 17 a~~la~~lg~~~id~~~~~~~~~~~~g~~~~~-~---~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~Vi~g~~~~--- 85 (180)
T PRK04182 17 ARLLAEKLGLKHVSAGEIFRELAKERGMSLEE-F---NKYAEEDPEIDKEIDRRQL-EIAE---KEDNVVLEGRLAG--- 85 (180)
T ss_pred HHHHHHHcCCcEecHHHHHHHHHHHcCCCHHH-H---HHHhhcCchHHHHHHHHHH-HHHh---cCCCEEEEEeecc---
Confidence 4578899999999999999986543 222222 2 222333331 22222222 1221 2457999983110
Q ss_pred HHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 79 ATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 79 a~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.+.. ..++.+|+|++|.+++.+|+..|.
T Consensus 86 --~~~~--~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 86 --WMAK--DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred --eEec--CCCCEEEEEECCHHHHHHHHHhcc
Confidence 1111 127899999999999999998774
No 50
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.95 E-value=0.00011 Score=57.88 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=86.4
Q ss_pred hHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcC-----CCCCHHHHHHHH----------------------HHHhcC
Q 028770 7 MQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPDEIVVTMV----------------------KERLSQ 59 (204)
Q Consensus 7 ~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G-----~~vpde~i~~ll----------------------~~~l~~ 59 (204)
+++|+++|+++++.++.+..+++.+..+.+..-.+ +.+.-..+.+++ .+.+.+
T Consensus 23 ~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~L~~i~hP~v~~~~~~~~~~ 102 (194)
T PRK00081 23 AELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEARKKLEAILHPLIREEILEQLQE 102 (194)
T ss_pred HHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999888887777776654321 123322222221 222222
Q ss_pred CCCCCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCC
Q 028770 60 PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 139 (204)
Q Consensus 60 ~~~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~ 139 (204)
.. ..++++---|.-.+ . .+ ....|.++++++|.++..+|+..|.
T Consensus 103 ~~--~~~~vv~e~pll~e-~-~~---~~~~D~vi~V~a~~e~~~~Rl~~R~----------------------------- 146 (194)
T PRK00081 103 AE--SSPYVVLDIPLLFE-N-GL---EKLVDRVLVVDAPPETQLERLMARD----------------------------- 146 (194)
T ss_pred cc--cCCEEEEEehHhhc-C-Cc---hhhCCeEEEEECCHHHHHHHHHHcC-----------------------------
Confidence 21 12454433333222 0 11 1236899999999999999998773
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 140 DDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 140 dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
..+.+.+..|+..+...... -..--+.||.+++++++..++.+.+..
T Consensus 147 ~~s~e~~~~ri~~Q~~~~~~----~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 147 GLSEEEAEAIIASQMPREEK----LARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred CCCHHHHHHHHHHhCCHHHH----HHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 12355677777654321111 111236789999999999999887753
No 51
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.94 E-value=0.00068 Score=51.65 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=56.1
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcC-ChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAG-SENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT 80 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~-t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~ 80 (204)
+..+++++|+++++.+++++...... .+.. .+.........+ +..+...+..... ...++|+||.-.+.
T Consensus 17 a~~la~~lg~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-~~~~~~~i~~~~~----~~~~~Vi~g~~~~~---- 86 (171)
T TIGR02173 17 AKILAEKLSLKLISAGDIFRELAAKMGLDLI-EFLNYAEENPEI-DKKIDRRIHEIAL----KEKNVVLESRLAGW---- 86 (171)
T ss_pred HHHHHHHcCCceecHHHHHHHHHHHcCCCHH-HHHHHHhcCcHH-HHHHHHHHHHHHh----cCCCEEEEecccce----
Confidence 34678889999999999998765432 1111 112222222111 1222222222211 13579999963221
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.+ ...++.+|+|++|.++..+|+..|.
T Consensus 87 ~~---~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 87 IV---REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred ee---cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 11 2347899999999999999998874
No 52
>PRK13947 shikimate kinase; Provisional
Probab=97.81 E-value=0.001 Score=50.92 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=54.7
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCCCCCcEEEe---ccCCCHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQENGWLLD---GYPRSLS 77 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~-G~~vpde~i~~ll~~~l~~~~~~~~G~ILD---GfPrt~~ 77 (204)
+..+|+++|+++++.+.++++.. +. .+.+++.. |...-.+.-..+++ .+... .+.|+. |++....
T Consensus 18 a~~La~~lg~~~id~d~~~~~~~--g~----~~~~~~~~~ge~~~~~~e~~~~~-~l~~~----~~~vi~~g~g~vl~~~ 86 (171)
T PRK13947 18 GKRVATTLSFGFIDTDKEIEKMT--GM----TVAEIFEKDGEVRFRSEEKLLVK-KLARL----KNLVIATGGGVVLNPE 86 (171)
T ss_pred HHHHHHHhCCCEEECchhhhhhc--CC----cHHHHHHHhChHHHHHHHHHHHH-HHhhc----CCeEEECCCCCcCCHH
Confidence 34678999999999999887652 22 22233332 32111122223332 23221 233332 2444555
Q ss_pred HHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 78 QATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 78 Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
+...|.+. +.+|+|++|++.+.+|+..|.
T Consensus 87 ~~~~l~~~----~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 87 NVVQLRKN----GVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred HHHHHHhC----CEEEEEECCHHHHHHHhcCCC
Confidence 66666654 369999999999999998764
No 53
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.0013 Score=50.83 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=81.9
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
|+.|+ ++|+.++++.+++++.=- -+..-. ...-..|..+.+...+...+. ..+.|+||--
T Consensus 17 ~~~L~-~lg~~~i~l~el~~e~~~-~~~~de-----~r~s~~vD~d~~~~~le~~~~-----~~~~Ivd~H~-------- 76 (180)
T COG1936 17 CKLLR-ELGYKVIELNELAKENGL-YTEYDE-----LRKSVIVDVDKLRKRLEELLR-----EGSGIVDSHL-------- 76 (180)
T ss_pred HHHHH-HhCCceeeHHHHHHhcCC-eeccCC-----ccceEEeeHHHHHHHHHHHhc-----cCCeEeechh--------
Confidence 56676 899999999999886400 000000 000112344455555544431 3568898841
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 161 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~ 161 (204)
......||+||.|.++++.+.+|+.+|+.++. .+ .|.+...+ +---.....
T Consensus 77 -~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~e---------------KI-----------~ENveAEi--~~vi~~EA~ 127 (180)
T COG1936 77 -SHLLPDCDLVVVLRADPEVLYERLKGRGYSEE---------------KI-----------LENVEAEI--LDVILIEAV 127 (180)
T ss_pred -hhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHH---------------HH-----------HHHHHHHH--HHHHHHHHH
Confidence 11111489999999999999999999986320 00 01111111 111111223
Q ss_pred HHhhcceeEEe-CCCCHHHHHHHHHHHHHH
Q 028770 162 SLYEDVTVEVN-GSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 162 ~~y~~~~~~Id-a~~~~~~V~~~i~~~l~~ 190 (204)
+.| ..++.|| .+.+++++.+.|..++..
T Consensus 128 E~~-~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 128 ERF-EAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred Hhc-CceEEEECCCCCHHHHHHHHHHHHcc
Confidence 333 6788899 689999999999999884
No 54
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.69 E-value=0.002 Score=49.25 Aligned_cols=94 Identities=23% Similarity=0.256 Sum_probs=58.2
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHc-CChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT 80 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~-~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~ 80 (204)
.+.||++||+.|+|.|.++|+..+. +-++.+ +.++-++.-.+ |-.+-....+... ..++||+|= =|-
T Consensus 17 a~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~e-f~~~AE~~p~i-D~~iD~rq~e~a~-----~~nvVlegr-----LA~ 84 (179)
T COG1102 17 ARELAEHLGLKLVSAGTIFREMARERGMSLEE-FSRYAEEDPEI-DKEIDRRQKELAK-----EGNVVLEGR-----LAG 84 (179)
T ss_pred HHHHHHHhCCceeeccHHHHHHHHHcCCCHHH-HHHHHhcCchh-hHHHHHHHHHHHH-----cCCeEEhhh-----hHH
Confidence 4578999999999999999987653 222222 22222222212 2222333222222 346888873 122
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCC
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r 109 (204)
.+.+ ..+|+-|+|..|-++-.+|+..|
T Consensus 85 Wi~k--~~adlkI~L~Apl~vRa~Ria~R 111 (179)
T COG1102 85 WIVR--EYADLKIWLKAPLEVRAERIAKR 111 (179)
T ss_pred HHhc--cccceEEEEeCcHHHHHHHHHHh
Confidence 2222 45899999999999999999987
No 55
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.67 E-value=0.00074 Score=53.83 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028770 88 QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV 167 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~ 167 (204)
.+|.+|++++|.++..+|+..|.. .+.+.+.+|+..+......+ +. -
T Consensus 133 ~~d~ii~V~a~~e~~~~Rl~~R~~-----------------------------~s~e~~~~Ri~~q~~~~~~~-~~---a 179 (208)
T PRK14731 133 GLDFIVVVAADTELRLERAVQRGM-----------------------------GSREEIRRRIAAQWPQEKLI-ER---A 179 (208)
T ss_pred cCCeEEEEECCHHHHHHHHHHcCC-----------------------------CCHHHHHHHHHHcCChHHHH-Hh---C
Confidence 469999999999999999988731 24678889988766555554 22 2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHHHH
Q 028770 168 TVEVNGSVNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 168 ~~~Ida~~~~~~V~~~i~~~l~~~~ 192 (204)
-+.|+.+.+++++++++.+.+...+
T Consensus 180 d~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 180 DYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHH
Confidence 3468899999999999999987765
No 56
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.67 E-value=0.00037 Score=55.19 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=87.8
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhH-HHHHHHHHcCCCCCHHHHHHHHHHHhcCCC--------------CCCCc
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENG-KRAKEHMEKGQLVPDEIVVTMVKERLSQPD--------------SQENG 66 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g-~~i~~~l~~G~~vpde~i~~ll~~~l~~~~--------------~~~~G 66 (204)
+..+|+++|+.++..||++|+.+...++.+ ...+...+.|+.++++....++...+.+.+ .....
T Consensus 20 a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v~~~L~~va~~~l~~G~s 99 (197)
T PRK12339 20 SGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAIMPGINRVIRRALLNGED 99 (197)
T ss_pred HHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456888999999999999999998765544 344444555666665443333332111111 01345
Q ss_pred EEEeccCCCHHHHHHHHHcCCCCCEEEEecC-CHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHH
Q 028770 67 WLLDGYPRSLSQATALKKYGFQPDLFILLEV-PEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK 145 (204)
Q Consensus 67 ~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~-~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~ 145 (204)
+|+||..-...+.......+ ..++++.+ ++++..+|+..|..+. .++.+
T Consensus 100 VIvEgv~l~p~~~~~~~~~~---v~~i~l~v~d~e~lr~Rl~~R~~~~-------------------------~~~~p-- 149 (197)
T PRK12339 100 LVIESLYFHPPMIDENRTNN---IRAFYLYIRDAELHRSRLADRINYT-------------------------HKNSP-- 149 (197)
T ss_pred EEEEecCcCHHHHHHHHhcC---eEEEEEEeCCHHHHHHHHHHHhhcc-------------------------cCCCc--
Confidence 89999776666654433332 25677766 4667779998885321 12222
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-----ceeEEeCCCCHHHHHHHH
Q 028770 146 VKLRLKTHHHNVEAVLSLYED-----VTVEVNGSVNKEDVFAQI 184 (204)
Q Consensus 146 i~~Rl~~y~~~~~~v~~~y~~-----~~~~Ida~~~~~~V~~~i 184 (204)
.+|+..|-.++..|.+|.-+ .+-.||+. +.++-++.+
T Consensus 150 -~~~~~~~~~~ir~i~~~l~~~a~~~~i~~i~~~-~~~~~~~~~ 191 (197)
T PRK12339 150 -GKRLAEHLPEYRTIMDYSIADARGYNIKVIDTD-NYREARNPL 191 (197)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCc-cHHHHHHHH
Confidence 23566666666777777632 45566653 344444443
No 57
>PRK13946 shikimate kinase; Provisional
Probab=97.61 E-value=0.0058 Score=47.62 Aligned_cols=152 Identities=17% Similarity=0.144 Sum_probs=84.7
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEecc--CCCHHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGY--PRSLSQAT 80 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGf--Prt~~Qa~ 80 (204)
..||+++|+++++.+.++.... +.++...+..+ |...-.++..+++..-+.. ...+|..|. +-+....+
T Consensus 28 ~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~~---ge~~~~~~e~~~l~~l~~~----~~~Vi~~ggg~~~~~~~r~ 98 (184)
T PRK13946 28 RRLATMLGLPFLDADTEIERAA--RMTIAEIFAAY---GEPEFRDLERRVIARLLKG----GPLVLATGGGAFMNEETRA 98 (184)
T ss_pred HHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHHH---CHHHHHHHHHHHHHHHHhc----CCeEEECCCCCcCCHHHHH
Confidence 4678899999999988766553 33333322221 3221123334444443322 223444543 34444455
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHH
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 160 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v 160 (204)
.|... ..+|+|++|.+++.+|+..|...|. .. ..+..+.+++-+..+ .
T Consensus 99 ~l~~~----~~~v~L~a~~e~~~~Rl~~r~~rp~---------------------~~-~~~~~~~i~~~~~~R----~-- 146 (184)
T PRK13946 99 AIAEK----GISVWLKADLDVLWERVSRRDTRPL---------------------LR-TADPKETLARLMEER----Y-- 146 (184)
T ss_pred HHHcC----CEEEEEECCHHHHHHHhcCCCCCCc---------------------CC-CCChHHHHHHHHHHH----H--
Confidence 55443 3689999999999999987742221 00 111122222222221 1
Q ss_pred HHHhhc-ceeEEeCCCCHHHHHHHHHHHHHHHHhhhh
Q 028770 161 LSLYED-VTVEVNGSVNKEDVFAQIDVALTNLLEQRK 196 (204)
Q Consensus 161 ~~~y~~-~~~~Ida~~~~~~V~~~i~~~l~~~~~~~~ 196 (204)
.+|.. .++......+++++.+.|...+.+.+.|-.
T Consensus 147 -~~y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~~~ 182 (184)
T PRK13946 147 -PVYAEADLTVASRDVPKEVMADEVIEALAAYLEKEE 182 (184)
T ss_pred -HHHHhCCEEEECCCCCHHHHHHHHHHHHHHhhcccc
Confidence 23432 455567889999999999999988665543
No 58
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.60 E-value=0.0016 Score=51.43 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=86.7
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHH------cCCCCCHHHHH----------------------HHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHME------KGQLVPDEIVV----------------------TMV 53 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~------~G~~vpde~i~----------------------~ll 53 (204)
+..++++||+++|+++++.++.+..+++.+..+.+..- .|..+.-..+. +-+
T Consensus 18 ~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~~~~l~~i~hP~i~~~~ 97 (195)
T PRK14730 18 GNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEERRWLENLIHPYVRERF 97 (195)
T ss_pred HHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHHHHHHHHHHhHHHHHHH
Confidence 34566667999999999999999888888888877653 23112211111 111
Q ss_pred HHHhcCCCCCCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhh
Q 028770 54 KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA 133 (204)
Q Consensus 54 ~~~l~~~~~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~ 133 (204)
.+++.+.. ...+++=--|--.+- .+. ...|.+++++||.++.++|+..|.
T Consensus 98 ~~~~~~~~--~~~~vv~e~pll~E~--~~~---~~~D~ii~V~a~~e~r~~Rl~~R~----------------------- 147 (195)
T PRK14730 98 EEELAQLK--SNPIVVLVIPLLFEA--KLT---DLCSEIWVVDCSPEQQLQRLIKRD----------------------- 147 (195)
T ss_pred HHHHHhcC--CCCEEEEEeHHhcCc--chH---hCCCEEEEEECCHHHHHHHHHHcC-----------------------
Confidence 22232221 223444222322110 111 136899999999999999998873
Q ss_pred hccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHH
Q 028770 134 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 134 rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
.-+.+.+.+|+... + ++...-..-=+.|+.+.+.+++.+++.+.+.
T Consensus 148 ------g~s~e~~~~ri~~Q---~-~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 148 ------GLTEEEAEARINAQ---W-PLEEKVKLADVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred ------CCCHHHHHHHHHhC---C-CHHHHHhhCCEEEECCCCHHHHHHHHHHHHh
Confidence 11345566666532 1 1111111112478999999999999987753
No 59
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.53 E-value=0.0016 Score=51.74 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=62.2
Q ss_pred cEEEeccCCCHHHHHHHHHcCCCCCEEEEecCC--HHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcH
Q 028770 66 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVP--EDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 143 (204)
Q Consensus 66 G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~--~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~ 143 (204)
-.|+|.=+ .-+..+.+. .||.++++.+| .+++.+|+..|. +++.
T Consensus 105 ~vi~~~~~---~g~~~l~~~--~pd~~~if~~pps~e~l~~Rl~~R~-----------------------------~~~~ 150 (206)
T PRK14738 105 DVIVKVDV---QGAASIKRL--VPEAVFIFLAPPSMDELTRRLELRR-----------------------------TESP 150 (206)
T ss_pred cEEEEcCH---HHHHHHHHh--CCCeEEEEEeCCCHHHHHHHHHHcC-----------------------------CCCH
Confidence 35776633 334445443 48887777775 457889987763 3346
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHH
Q 028770 144 EKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 191 (204)
Q Consensus 144 e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~ 191 (204)
+.+.+|+..+...+... +...++.||++.++++++++|.+.|.+.
T Consensus 151 ~~~~~Rl~~~~~e~~~~---~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 151 EELERRLATAPLELEQL---PEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred HHHHHHHHHHHHHHhcc---cCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 78899998776554422 1226789999999999999999999876
No 60
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.46 E-value=0.0021 Score=51.08 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=90.0
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCC--H-HHHHHHHHHHhcCCCC------------CCCc-
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP--D-EIVVTMVKERLSQPDS------------QENG- 66 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vp--d-e~i~~ll~~~l~~~~~------------~~~G- 66 (204)
|++++++|++.|+++++.|+.+..+++....+.+. .|..+- | .+-...|.+++-+... ....
T Consensus 19 a~~~~~~G~~vidaD~v~r~~~~~~~~~~~~i~~~--fG~~i~~~dg~~~r~~L~~~vf~~~~~~~~Le~i~hPli~~~~ 96 (201)
T COG0237 19 AKILAELGFPVIDADDVAREVVEPGGEALQEIAER--FGLEILDEDGGLDRRKLREKVFNDPEARLKLEKILHPLIRAEI 96 (201)
T ss_pred HHHHHHcCCeEEEccHHHHHHHhccchHHHHHHHH--cCCcccCCCchhHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence 56677799999999999998888776655444332 232221 1 1222222222221110 0000
Q ss_pred -EEEeccCCC---HHHHHHHHHcCC--CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCC
Q 028770 67 -WLLDGYPRS---LSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 140 (204)
Q Consensus 67 -~ILDGfPrt---~~Qa~~l~~~~~--~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~d 140 (204)
.+++|. ++ +..+..|.+.+. ..|.||.++||+++-++|+..|. .
T Consensus 97 ~~~~~~~-~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~-----------------------------~ 146 (201)
T COG0237 97 KVVIDGA-RSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD-----------------------------G 146 (201)
T ss_pred HHHHHHh-hCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcC-----------------------------C
Confidence 122222 11 133445555422 26899999999999999998874 2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHHhh
Q 028770 141 DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 194 (204)
Q Consensus 141 d~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~~~ 194 (204)
++.+.+..|+..-....+. +.--=..+|++.+++...+++...+...+..
T Consensus 147 ~~~e~~~~~~~~Q~~~~ek----~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 147 LDEEDAEARLASQRDLEEK----LALADVVIDNDGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred CCHHHHHHHHHhcCCHHHH----HhhcCChhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 3344555555433222222 1111236999999999999999998877654
No 61
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.46 E-value=0.0033 Score=51.35 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeccCCCHHH---HHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCC
Q 028770 48 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQ---ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 124 (204)
Q Consensus 48 ~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Q---a~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~ 124 (204)
....++...+... ..+|+||......+ ...+.+....|..+|++++|.+++.+|...|.. +
T Consensus 56 ~~~~~i~~~l~~~----~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-~----------- 119 (249)
T TIGR03574 56 STLYLIKTALKNK----YSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-K----------- 119 (249)
T ss_pred HHHHHHHHHHhCC----CeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-C-----------
Confidence 3444555555532 34889997544433 333333334578899999999999999877631 0
Q ss_pred CCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHH-hhcceeEEeCCC--CHHHHHHHHHHHHHHHH
Q 028770 125 PPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL-YEDVTVEVNGSV--NKEDVFAQIDVALTNLL 192 (204)
Q Consensus 125 pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~-y~~~~~~Ida~~--~~~~V~~~i~~~l~~~~ 192 (204)
..++.+...+..|. .|...+ +....++||++. +++++++.|...+.+.+
T Consensus 120 ----------------~~~~~i~~l~~r~e---~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~~~ 171 (249)
T TIGR03574 120 ----------------IPNEVIKDMYEKFD---EPGTKYSWDLPDLTIDTTKKIDYNEILEEILEISENKL 171 (249)
T ss_pred ----------------CCHHHHHHHHHhhC---CCCCCCCccCceEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 11334444333442 222222 244678889876 66899999988776544
No 62
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.41 E-value=0.0042 Score=49.85 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=45.0
Q ss_pred CCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHH-HHHHHHHHHhh
Q 028770 87 FQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHH-HNVEAVLSLYE 165 (204)
Q Consensus 87 ~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~-~~~~~v~~~y~ 165 (204)
..||++|+|++|++++.+|+..|.... ..........++..+. +...+ .|.
T Consensus 141 ~~Pd~~i~l~~~~~~~~~Ri~~R~~~~-------------------------e~~~~~~yl~~l~~~y~~~~~~---~~~ 192 (219)
T cd02030 141 LPPHLVIYLDVPVPEVQKRIKKRGDPH-------------------------EMKVTSAYLQDIENAYKKTFLP---EIS 192 (219)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCch-------------------------hhcccHHHHHHHHHHHHHHHHH---hhc
Confidence 579999999999999999998874210 0011112223333222 21111 132
Q ss_pred --cceeEEeCC--CCHHHHHHHHHH
Q 028770 166 --DVTVEVNGS--VNKEDVFAQIDV 186 (204)
Q Consensus 166 --~~~~~Ida~--~~~~~V~~~i~~ 186 (204)
..++.||++ .++++|..+|..
T Consensus 193 ~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 193 EHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHc
Confidence 378899999 888888888753
No 63
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.012 Score=45.46 Aligned_cols=145 Identities=23% Similarity=0.241 Sum_probs=85.7
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCCCCCcEEEe--ccCCCHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQENGWLLD--GYPRSLSQA 79 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~-G~~vpde~i~~ll~~~l~~~~~~~~G~ILD--GfPrt~~Qa 79 (204)
..+|+.+|++.++++.+|.+... ..|.+..+. |+.-=-..=.+++.+-+... ..+|=- |..-+..-.
T Consensus 20 r~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~----~~ViaTGGG~v~~~enr 89 (172)
T COG0703 20 RALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEED----NAVIATGGGAVLSEENR 89 (172)
T ss_pred HHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhcC----CeEEECCCccccCHHHH
Confidence 46889999999999999998754 233444443 33110112222333322222 122222 345566666
Q ss_pred HHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCC---cHHHHHHHHHHHHHH
Q 028770 80 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD---TEEKVKLRLKTHHHN 156 (204)
Q Consensus 80 ~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd---~~e~i~~Rl~~y~~~ 156 (204)
..|.+.| .||+|++|.+++.+|+.....-| +.+..+. -.+.+.+|...|++.
T Consensus 90 ~~l~~~g----~vv~L~~~~e~l~~Rl~~~~~RP---------------------ll~~~~~~~~l~~L~~~R~~~Y~e~ 144 (172)
T COG0703 90 NLLKKRG----IVVYLDAPFETLYERLQRDRKRP---------------------LLQTEDPREELEELLEERQPLYREV 144 (172)
T ss_pred HHHHhCC----eEEEEeCCHHHHHHHhccccCCC---------------------cccCCChHHHHHHHHHHHHHHHHHh
Confidence 7777776 79999999999999998432211 1111221 124455555555433
Q ss_pred HHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHH
Q 028770 157 VEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 157 ~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~ 192 (204)
..+.++++...++|.+.|...|...+
T Consensus 145 ----------a~~~~~~~~~~~~v~~~i~~~l~~~~ 170 (172)
T COG0703 145 ----------ADFIIDTDDRSEEVVEEILEALEGSL 170 (172)
T ss_pred ----------CcEEecCCCCcHHHHHHHHHHHHHhc
Confidence 34578888777999999988876543
No 64
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.27 E-value=0.0035 Score=48.92 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=83.4
Q ss_pred hhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHH-----H-cCCCCCHH----------------------HHHHHHHH
Q 028770 4 SSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHM-----E-KGQLVPDE----------------------IVVTMVKE 55 (204)
Q Consensus 4 ~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l-----~-~G~~vpde----------------------~i~~ll~~ 55 (204)
.+++..|+++|+++++.++.+..+++....+.+.. . .|+ +.-. .+.+-+.+
T Consensus 18 ~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~~~le~ilhP~i~~~i~~ 96 (188)
T TIGR00152 18 YLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEELKWLNNLLHPLIREWMKK 96 (188)
T ss_pred HHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHHHHHHHhhCHHHHHHHHH
Confidence 34445469999999999998887776555554332 1 222 2211 12222233
Q ss_pred HhcCCCCCCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhc
Q 028770 56 RLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARL 135 (204)
Q Consensus 56 ~l~~~~~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl 135 (204)
.+.+... ..++|+-+.|.-... .+. ...|.++++++|.++..+|+..|.
T Consensus 97 ~i~~~~~-~~~~vvi~~pll~e~--~~~---~~~D~vv~V~~~~~~~~~Rl~~R~------------------------- 145 (188)
T TIGR00152 97 LLAQFQS-KLAYVLLDVPLLFEN--KLR---SLCDRVIVVDVSPQLQLERLMQRD------------------------- 145 (188)
T ss_pred HHHHhhc-CCCEEEEEchHhhhC--CcH---HhCCEEEEEECCHHHHHHHHHHcC-------------------------
Confidence 3333211 124777777665432 122 236899999999999999998874
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHH
Q 028770 136 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQID 185 (204)
Q Consensus 136 ~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~ 185 (204)
..+.+.+.+|+....... ..-..-=+.|+.+.++++...++.
T Consensus 146 ----~~s~~~~~~r~~~q~~~~----~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 146 ----NLTEEEVQKRLASQMDIE----ERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred ----CCCHHHHHHHHHhcCCHH----HHHHhCCEEEECCCCHHHHHHHHh
Confidence 123456677766542111 111112246888999999888774
No 65
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.27 E-value=0.0036 Score=48.76 Aligned_cols=117 Identities=19% Similarity=0.321 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCCCCHHHHH--------HHHHHHhcCCCCCCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCH-HHH
Q 028770 32 KRAKEHMEKGQLVPDEIVV--------TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE-DTL 102 (204)
Q Consensus 32 ~~i~~~l~~G~~vpde~i~--------~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~-~~~ 102 (204)
..+.+.+++|+.++..... ..+...+.+ .+.+|||+.|+...|++.. ...| .+|+|..|+ +.+
T Consensus 57 ~ef~~~i~~g~fve~~~~~g~~YGt~~~~i~~~~~~----~~~~ild~~~~~~~~l~~~---~~~~-~vIfi~~~s~~~l 128 (184)
T smart00072 57 EEFEDDIKSGLFLEWGEYSGNYYGTSKETIRQVAEQ----GKHCLLDIDPQGVKQLRKA---QLYP-IVIFIAPPSSEEL 128 (184)
T ss_pred HHHHHHHHcCCeEEEEEEcCcCcccCHHHHHHHHHc----CCeEEEEECHHHHHHHHHh---CCCc-EEEEEeCcCHHHH
Confidence 6778888888877654322 245555543 4679999999999888754 2333 788888555 568
Q ss_pred HHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHH
Q 028770 103 VERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFA 182 (204)
Q Consensus 103 ~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~ 182 (204)
.+|+..| .+++++.+.+|+........ .|..--..|+.+ +.++.++
T Consensus 129 ~~rl~~R-----------------------------~~~~~~~i~~rl~~a~~~~~----~~~~fd~~I~n~-~l~~~~~ 174 (184)
T smart00072 129 ERRLRGR-----------------------------GTETAERIQKRLAAAQKEAQ----EYHLFDYVIVND-DLEDAYE 174 (184)
T ss_pred HHHHHhc-----------------------------CCCCHHHHHHHHHHHHHHHh----hhccCCEEEECc-CHHHHHH
Confidence 8877655 35567889999986543322 232222344544 7888888
Q ss_pred HHHHHHHH
Q 028770 183 QIDVALTN 190 (204)
Q Consensus 183 ~i~~~l~~ 190 (204)
++..+|.+
T Consensus 175 ~l~~~i~~ 182 (184)
T smart00072 175 ELKEILEA 182 (184)
T ss_pred HHHHHHHh
Confidence 88888764
No 66
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.19 E-value=0.034 Score=42.11 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=77.6
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEec--cCCCHHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDG--YPRSLSQAT 80 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDG--fPrt~~Qa~ 80 (204)
..||+++|+.+++.+++++.... .++...+.+ .|...--+....++..-.... ..+|..| +.-......
T Consensus 22 ~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~~---~g~~~~~~~~~~~~~~l~~~~----~~vi~~g~~~~~~~~~r~ 92 (175)
T PRK00131 22 RLLAKRLGYDFIDTDHLIEARAG--KSIPEIFEE---EGEAAFRELEEEVLAELLARH----NLVISTGGGAVLREENRA 92 (175)
T ss_pred HHHHHHhCCCEEEChHHHHHHcC--CCHHHHHHH---HCHHHHHHHHHHHHHHHHhcC----CCEEEeCCCEeecHHHHH
Confidence 35789999999999998875432 222222211 232112233344444333221 2244434 222223333
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHH
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 160 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v 160 (204)
.|.. ...+|+|++|.+.+.+|+..|.-.+ +. ..++..+.+.+.+..+ .+
T Consensus 93 ~l~~----~~~~v~l~~~~~~~~~R~~~~~~r~---------------------~~-~~~~~~~~~~~~~~~~----~~- 141 (175)
T PRK00131 93 LLRE----RGTVVYLDASFEELLRRLRRDRNRP---------------------LL-QTNDPKEKLRDLYEER----DP- 141 (175)
T ss_pred HHHh----CCEEEEEECCHHHHHHHhcCCCCCC---------------------cC-CCCChHHHHHHHHHHH----HH-
Confidence 3422 3479999999999999998764211 00 1122222222222222 11
Q ss_pred HHHhhc-ceeEEe-CCCCHHHHHHHHHHHHHHHH
Q 028770 161 LSLYED-VTVEVN-GSVNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 161 ~~~y~~-~~~~Id-a~~~~~~V~~~i~~~l~~~~ 192 (204)
.|.. --+.|| .+.+++++.+.|.+.+...+
T Consensus 142 --~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~~ 173 (175)
T PRK00131 142 --LYEEVADITVETDGRSPEEVVNEILEKLEAAW 173 (175)
T ss_pred --HHHhhcCeEEeCCCCCHHHHHHHHHHHHHhhc
Confidence 1222 124566 68999999999999987654
No 67
>PRK13948 shikimate kinase; Provisional
Probab=97.16 E-value=0.026 Score=44.10 Aligned_cols=146 Identities=18% Similarity=0.146 Sum_probs=80.9
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCCCCCcEEEe---ccCCCHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQENGWLLD---GYPRSLSQ 78 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~-~G~~vpde~i~~ll~~~l~~~~~~~~G~ILD---GfPrt~~Q 78 (204)
..+|+++|..+|+++.++++... ..+.++.. .|+..=-++-.+++..-+.. .+.||. |-+-....
T Consensus 28 ~~La~~lg~~~iD~D~~ie~~~g------~si~~if~~~Ge~~fR~~E~~~l~~l~~~-----~~~VIa~GgG~v~~~~n 96 (182)
T PRK13948 28 WELSRALMLHFIDTDRYIERVTG------KSIPEIFRHLGEAYFRRCEAEVVRRLTRL-----DYAVISLGGGTFMHEEN 96 (182)
T ss_pred HHHHHHcCCCEEECCHHHHHHHh------CCHHHHHHHhCHHHHHHHHHHHHHHHHhc-----CCeEEECCCcEEcCHHH
Confidence 45788999999999988877543 23333333 23311112233333332221 344554 56666655
Q ss_pred HHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 028770 79 ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE 158 (204)
Q Consensus 79 a~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~ 158 (204)
...|.+.| .+|+|++|.+++.+|+..+ .-| +... .+..+ ++.. ...
T Consensus 97 ~~~l~~~g----~vV~L~~~~e~l~~Rl~~~-~RP---------------------ll~~-~~~~~----~l~~---l~~ 142 (182)
T PRK13948 97 RRKLLSRG----PVVVLWASPETIYERTRPG-DRP---------------------LLQV-EDPLG----RIRT---LLN 142 (182)
T ss_pred HHHHHcCC----eEEEEECCHHHHHHHhcCC-CCC---------------------CCCC-CChHH----HHHH---HHH
Confidence 55666543 5899999999999998432 111 1111 11111 2221 122
Q ss_pred HHHHHhhcceeEEeC-CCCHHHHHHHHHHHHHHHHh
Q 028770 159 AVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 159 ~v~~~y~~~~~~Ida-~~~~~~V~~~i~~~l~~~~~ 193 (204)
.-..+|..--++||. ..+++++.+.|...+...+.
T Consensus 143 ~R~~~Y~~a~~~i~t~~~~~~ei~~~i~~~l~~~~~ 178 (182)
T PRK13948 143 EREPVYRQATIHVSTDGRRSEEVVEEIVEKLWAWAE 178 (182)
T ss_pred HHHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 223345433346775 47899999999998887553
No 68
>PRK00625 shikimate kinase; Provisional
Probab=97.12 E-value=0.021 Score=44.27 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=54.4
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCCCCCcEEEec--cCCCHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQENGWLLDG--YPRSLSQ 78 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~-G~~vpde~i~~ll~~~l~~~~~~~~G~ILDG--fPrt~~Q 78 (204)
+..+|+++|+++|++++++++..... ....+.+..+. |...=-+.-..++. .+.. ...+|-+| .+-....
T Consensus 17 ~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~-~l~~----~~~VIs~GGg~~~~~e~ 89 (173)
T PRK00625 17 GKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALT-SLPV----IPSIVALGGGTLMIEPS 89 (173)
T ss_pred HHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHH-Hhcc----CCeEEECCCCccCCHHH
Confidence 45688999999999999999765431 00113333322 32111111122222 2321 22344444 3344433
Q ss_pred HHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 79 ATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 79 a~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.+.|... ..||+|++|.+++.+|+..|.
T Consensus 90 ~~~l~~~----~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 90 YAHIRNR----GLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred HHHHhcC----CEEEEEECCHHHHHHHHhcCC
Confidence 4444322 469999999999999998874
No 69
>PLN02422 dephospho-CoA kinase
Probab=97.04 E-value=0.019 Score=46.69 Aligned_cols=144 Identities=18% Similarity=0.160 Sum_probs=83.3
Q ss_pred hHhCCceeCHHHHHHHHHHcCChhHHHHHHHH-----H-cCCCCCHHHHHHHH----------------------HHHhc
Q 028770 7 MQYGLVHIAAGDLLRAEIAAGSENGKRAKEHM-----E-KGQLVPDEIVVTMV----------------------KERLS 58 (204)
Q Consensus 7 ~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l-----~-~G~~vpde~i~~ll----------------------~~~l~ 58 (204)
+++|+++|+++++.++.+..+++....+.+.. . .|+ +.-..+.+++ ..++.
T Consensus 22 ~~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~-idR~~L~~~VF~d~~~~~~Le~IlHP~V~~~~~~~~~ 100 (232)
T PLN02422 22 KSSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGE-VDREKLGQIVFSDPSKRQLLNRLLAPYISSGIFWEIL 100 (232)
T ss_pred HHCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCc-CCHHHHHHHHhCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47899999999999999988776555554433 1 232 3322222222 11111
Q ss_pred CCCCCCCcEEEeccCCCHHHHHHHHHcCC--CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhcc
Q 028770 59 QPDSQENGWLLDGYPRSLSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLT 136 (204)
Q Consensus 59 ~~~~~~~G~ILDGfPrt~~Qa~~l~~~~~--~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~ 136 (204)
+.......+++--.| .|.+.+. ..|.+++++||.++..+|+..|.-
T Consensus 101 ~~~~~~~~~vv~eip-------LL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g------------------------- 148 (232)
T PLN02422 101 KLWLKGCKVIVLDIP-------LLFETKMDKWTKPVVVVWVDPETQLERLMARDG------------------------- 148 (232)
T ss_pred HHHhcCCCEEEEEeh-------hhhhcchhhhCCEEEEEECCHHHHHHHHHHcCC-------------------------
Confidence 110011234443233 2222222 358999999999999999998831
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHH
Q 028770 137 KRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 191 (204)
Q Consensus 137 ~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~ 191 (204)
-+.+.+.+|+..-...... -..--+.|+.+.+.+++..++.+.++..
T Consensus 149 ----~s~eea~~Ri~~Q~~~eek----~~~AD~VI~N~gs~e~L~~qv~~ll~~l 195 (232)
T PLN02422 149 ----LSEEQARNRINAQMPLDWK----RSKADIVIDNSGSLEDLKQQFQKVLEKI 195 (232)
T ss_pred ----CCHHHHHHHHHHcCChhHH----HhhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 1345666666322111111 0111247889999999999999888764
No 70
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.02 E-value=0.033 Score=42.15 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=54.7
Q ss_pred cEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHH
Q 028770 66 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK 145 (204)
Q Consensus 66 G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~ 145 (204)
.+|-.|+.+ ......+...+ .+-.+|+|++|.+++.+|+..|..+ . ...+.
T Consensus 73 ~Vi~~t~~~-~~~r~~~~~~~-~~~~~i~l~~~~e~~~~R~~~R~~~--------------------------~-~~~~~ 123 (163)
T TIGR01313 73 GIITCSALK-RHYRDILREAE-PNLHFIYLSGDKDVILERMKARKGH--------------------------F-MKADM 123 (163)
T ss_pred EEEEecccH-HHHHHHHHhcC-CCEEEEEEeCCHHHHHHHHHhccCC--------------------------C-CCHHH
Confidence 466678764 23334444443 2234799999999999999887411 0 01233
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cceeEEeCCCCHHHHHHHHHHHHH
Q 028770 146 VKLRLKTHHHNVEAVLSLYE-DVTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 146 i~~Rl~~y~~~~~~v~~~y~-~~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
+..++..+.. + .+. ..++.||+++++++|.+++...|-
T Consensus 124 i~~~~~~~~~---~---~~~e~~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 124 LESQFAALEE---P---LADETDVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred HHHHHHHhCC---C---CCCCCceEEEECCCCHHHHHHHHHHHHh
Confidence 4444443321 1 011 257899999999999999887763
No 71
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.94 E-value=0.018 Score=44.84 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=57.8
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHH
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE 144 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e 144 (204)
..+|++|- +.. ...+.+....+-.+|+|++|.+++.+|+..|.- .+++
T Consensus 90 ~~VI~~G~-~~~--~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~-----------------------------~~~~ 137 (186)
T PRK10078 90 FDVLVNGS-RAH--LPQARARYQSALLPVCLQVSPEILRQRLENRGR-----------------------------ENAS 137 (186)
T ss_pred CEEEEeCh-HHH--HHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC-----------------------------CCHH
Confidence 35788887 222 222333222455789999999999999986621 1345
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cceeEEeCCCCHHHHHHHHHHHHHHH
Q 028770 145 KVKLRLKTHHHNVEAVLSLYE-DVTVEVNGSVNKEDVFAQIDVALTNL 191 (204)
Q Consensus 145 ~i~~Rl~~y~~~~~~v~~~y~-~~~~~Ida~~~~~~V~~~i~~~l~~~ 191 (204)
.+.+|+..+. +|. ...+.||.+++++++.++|...+...
T Consensus 138 ~i~~rl~r~~--------~~~~ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 138 EINARLARAA--------RYQPQDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred HHHHHHHHhh--------hhccCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 6777875331 233 35678999999999999998887643
No 72
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.89 E-value=0.018 Score=44.25 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=57.9
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHH
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE 144 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e 144 (204)
..+|+||-+. ....+.+.. ....+|+|++|.+++.+|+..|. |. +++
T Consensus 91 ~~vv~~g~~~---~~~~~~~~~-~~~~~i~l~~~~~~~~~Rl~~R~---------------------------~~--~~~ 137 (179)
T TIGR02322 91 DVVVVNGSRA---VLPEARQRY-PNLLVVNITASPDVLAQRLAARG---------------------------RE--SRE 137 (179)
T ss_pred CEEEEECCHH---HHHHHHHHC-CCcEEEEEECCHHHHHHHHHHcC---------------------------CC--CHH
Confidence 4588899732 223333322 24479999999999999998773 11 245
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 145 KVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 145 ~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
.+.+|+..+..... -...++.||++.+++++.++|...+..
T Consensus 138 ~~~~rl~~~~~~~~-----~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 138 EIEERLARSARFAA-----APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred HHHHHHHHHhhccc-----ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 67777754432211 112466789999999999999988753
No 73
>PRK06762 hypothetical protein; Provisional
Probab=96.81 E-value=0.016 Score=44.11 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=75.0
Q ss_pred hhhhhHh--CCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHH---
Q 028770 3 SSSYMQY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLS--- 77 (204)
Q Consensus 3 ~~~a~~~--gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~--- 77 (204)
..+++++ ++.+++ +|.++..+..... ..+. .-.+.+..++...+.. ..-+|+||.-....
T Consensus 20 ~~L~~~l~~~~~~i~-~D~~r~~l~~~~~---------~~~~-~~~~~~~~~~~~~~~~----g~~vild~~~~~~~~~~ 84 (166)
T PRK06762 20 KQLQERLGRGTLLVS-QDVVRRDMLRVKD---------GPGN-LSIDLIEQLVRYGLGH----CEFVILEGILNSDRYGP 84 (166)
T ss_pred HHHHHHhCCCeEEec-HHHHHHHhccccC---------CCCC-cCHHHHHHHHHHHHhC----CCEEEEchhhccHhHHH
Confidence 3456666 677777 4556654432100 0011 1123333444333322 24578999733222
Q ss_pred HHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 78 QATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 78 Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
..+.+.+....|..+|+|++|.+++.+|...|... +. -..+.+..++..+..
T Consensus 85 ~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~-------------------------~~-~~~~~l~~~~~~~~~-- 136 (166)
T PRK06762 85 MLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS-------------------------HE-FGEDDMRRWWNPHDT-- 136 (166)
T ss_pred HHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc-------------------------cc-CCHHHHHHHHhhcCC--
Confidence 23444443344789999999999999999888420 00 113444444433221
Q ss_pred HHHHHHhhcceeEEeCCCCHHHHHHHHHHHH
Q 028770 158 EAVLSLYEDVTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 158 ~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l 188 (204)
+ +.--.+.++.+.++++|.++|...+
T Consensus 137 --~---~~~~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 137 --L---GVIGETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred --c---CCCCeEEecCCCCHHHHHHHHHHHh
Confidence 1 1113466778899999999998765
No 74
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.79 E-value=0.064 Score=39.87 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=52.0
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEe---ccCCCHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLD---GYPRSLSQA 79 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILD---GfPrt~~Qa 79 (204)
..+|+++|+.+++.++++...... ......... | .+.....-.+.+.... ...++||+ |+.-+....
T Consensus 17 ~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~----~~~~~~~e~~~~~~~~-~~~~~vi~~g~~~i~~~~~~ 86 (154)
T cd00464 17 RLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---G----EEGFRELEREVLLLLL-TKENAVIATGGGAVLREENR 86 (154)
T ss_pred HHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---C----HHHHHHHHHHHHHHHh-ccCCcEEECCCCccCcHHHH
Confidence 467889999999999988765432 222222211 2 1222222111111111 12356666 343343332
Q ss_pred HHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 80 TALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 80 ~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
..+. ....+|+|++|.+++.+|+..|.
T Consensus 87 ~~~~----~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 87 RLLL----ENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred HHHH----cCCeEEEEeCCHHHHHHHhccCC
Confidence 3332 24579999999999999998764
No 75
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.76 E-value=0.025 Score=44.73 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=84.4
Q ss_pred hhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHH-----H-cCCCCCHH------------------HHHHHH----HHH
Q 028770 5 SYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHM-----E-KGQLVPDE------------------IVVTMV----KER 56 (204)
Q Consensus 5 ~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l-----~-~G~~vpde------------------~i~~ll----~~~ 56 (204)
+.+++|++.|+.+++.++.+..+++....+.+.. . +|. +.-. ++-.++ ...
T Consensus 18 ~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~~~~~~L~~i~hP~v~~~~~~~ 96 (196)
T PRK14732 18 ILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDEEKLKALNELIHPLVRKDFQKI 96 (196)
T ss_pred HHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456799999999999988776666544444322 1 222 1111 111222 222
Q ss_pred hcCCCCCCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhcc
Q 028770 57 LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLT 136 (204)
Q Consensus 57 l~~~~~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~ 136 (204)
+.... ..++++..-|-=.+ ... .-..|.++++++|.++.++|+..|.-
T Consensus 97 ~~~~~--~~~~vi~e~pLL~E-~~~----~~~~D~vi~V~a~~e~r~~RL~~R~g------------------------- 144 (196)
T PRK14732 97 LQTTA--EGKLVIWEVPLLFE-TDA----YTLCDATVTVDSDPEESILRTISRDG------------------------- 144 (196)
T ss_pred HHHHh--cCCcEEEEeeeeeE-cCc----hhhCCEEEEEECCHHHHHHHHHHcCC-------------------------
Confidence 22111 22455555554322 100 11358999999999999999988731
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHH
Q 028770 137 KRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 137 ~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~ 192 (204)
-+.+.+..|+..-. ++.+.-..-=+.|+.+.+.+++..++.+.+...+
T Consensus 145 ----~s~e~a~~ri~~Q~----~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 145 ----MKKEDVLARIASQL----PITEKLKRADYIVRNDGNREGLKEECKILYSTLL 192 (196)
T ss_pred ----CCHHHHHHHHHHcC----CHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 13566777765421 2211111112468888899999999998876544
No 76
>PRK07261 topology modulation protein; Provisional
Probab=96.75 E-value=0.0025 Score=49.19 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=59.5
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..|++.+|+++++.+++... + .....|.+-....+...+.+ ..||+||.+.+..+...
T Consensus 17 a~~l~~~~~~~~i~~D~~~~~------~----------~~~~~~~~~~~~~~~~~~~~-----~~wIidg~~~~~~~~~~ 75 (171)
T PRK07261 17 ARKLSQHYNCPVLHLDTLHFQ------P----------NWQERDDDDMIADISNFLLK-----HDWIIDGNYSWCLYEER 75 (171)
T ss_pred HHHHHHHhCCCeEecCCEEec------c----------ccccCCHHHHHHHHHHHHhC-----CCEEEcCcchhhhHHHH
Confidence 345778889999988776421 1 01223455556666665543 24999999888666666
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
+.. .|.+|+|++|..+++.|+..|.+
T Consensus 76 l~~----ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 76 MQE----ADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred HHH----CCEEEEEcCCHHHHHHHHHHHHH
Confidence 653 48899999999999999998854
No 77
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.73 E-value=0.056 Score=40.95 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=58.0
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEe--ccCCCHHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLD--GYPRSLSQAT 80 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILD--GfPrt~~Qa~ 80 (204)
..+|+.+|++.+++++++.+... ..++..+.+. |..-=-+.-.+++.+-+... ..+|-- |.+.+....+
T Consensus 10 ~~lA~~L~~~fiD~D~~i~~~~g--~si~~i~~~~---G~~~fr~~E~~~l~~l~~~~----~~VIa~GGG~~~~~~~~~ 80 (158)
T PF01202_consen 10 KLLAKRLGRPFIDLDDEIEERTG--MSISEIFAEE---GEEAFRELESEALRELLKEN----NCVIACGGGIVLKEENRE 80 (158)
T ss_dssp HHHHHHHTSEEEEHHHHHHHHHT--SHHHHHHHHH---HHHHHHHHHHHHHHHHHCSS----SEEEEE-TTGGGSHHHHH
T ss_pred HHHHHHhCCCccccCHHHHHHhC--CcHHHHHHcC---ChHHHHHHHHHHHHHHhccC----cEEEeCCCCCcCcHHHHH
Confidence 35789999999999999977643 2333333222 22100123344454433332 233333 4777778777
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.|.+.+ .||+|+.+.+++.+|+..+.
T Consensus 81 ~L~~~g----~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 81 LLKENG----LVIYLDADPEELAERLRARD 106 (158)
T ss_dssp HHHHHS----EEEEEE--HHHHHHHHHHHC
T ss_pred HHHhCC----EEEEEeCCHHHHHHHHhCCC
Confidence 777443 69999999999999997653
No 78
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.57 E-value=0.076 Score=44.92 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=78.2
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCCCCCcEEE-ecc--CCCHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQENGWLL-DGY--PRSLSQ 78 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~-~G~~vpde~i~~ll~~~l~~~~~~~~G~IL-DGf--Prt~~Q 78 (204)
..+|+++|+++++++..+.+... .. +.+... .|...-.++-.+++...+.+. ...|| .|- +.....
T Consensus 151 ~~La~~Lg~~~id~D~~i~~~~G--~~----i~ei~~~~G~~~fr~~e~~~l~~ll~~~----~~~VI~~Ggg~v~~~~~ 220 (309)
T PRK08154 151 RMLAARLGVPFVELNREIEREAG--LS----VSEIFALYGQEGYRRLERRALERLIAEH----EEMVLATGGGIVSEPAT 220 (309)
T ss_pred HHHHHHcCCCEEeHHHHHHHHhC--CC----HHHHHHHHCHHHHHHHHHHHHHHHHhhC----CCEEEECCCchhCCHHH
Confidence 45788999999998877665432 22 222222 232211223334444433322 12344 332 333333
Q ss_pred HHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 028770 79 ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE 158 (204)
Q Consensus 79 a~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~ 158 (204)
.+.+.. ...+|+|++|.+++.+|+..|.... | +.. .++..+.+++.+...
T Consensus 221 ~~~l~~----~~~~V~L~a~~e~~~~Rl~~r~~~r------------p--------~~~-~~~~~e~i~~~~~~R----- 270 (309)
T PRK08154 221 FDLLLS----HCYTVWLKASPEEHMARVRAQGDLR------------P--------MAD-NREAMEDLRRILASR----- 270 (309)
T ss_pred HHHHHh----CCEEEEEECCHHHHHHHHhcCCCCC------------C--------CCC-CCChHHHHHHHHHHH-----
Confidence 333333 3469999999999999998764210 0 000 111223333222221
Q ss_pred HHHHHhhcceeEEeCCC-CHHHHHHHHHHHHHHHHh
Q 028770 159 AVLSLYEDVTVEVNGSV-NKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 159 ~v~~~y~~~~~~Ida~~-~~~~V~~~i~~~l~~~~~ 193 (204)
..+|..-=+.||.+. +++++.+.|...+...+.
T Consensus 271 --~~~y~~ad~~I~t~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 271 --EPLYARADAVVDTSGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred --HHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 223332223577665 999999999999877654
No 79
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.53 E-value=0.14 Score=39.51 Aligned_cols=144 Identities=18% Similarity=0.228 Sum_probs=73.6
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEe-c--cCCCHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLD-G--YPRSLSQA 79 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILD-G--fPrt~~Qa 79 (204)
..+|+.+|+.+++.+..+..... ..++...+. .|...=-+.-.+++.. +.. ..++|+. | .+-+..-.
T Consensus 22 ~~La~~l~~~~vd~D~~i~~~~g--~~i~~~~~~---~g~~~fr~~e~~~l~~-l~~----~~~~vi~~ggg~v~~~~~~ 91 (172)
T PRK05057 22 RQLAQQLNMEFYDSDQEIEKRTG--ADIGWVFDV---EGEEGFRDREEKVINE-LTE----KQGIVLATGGGSVKSRETR 91 (172)
T ss_pred HHHHHHcCCcEEECCchHHHHhC--cCHhHHHHH---hCHHHHHHHHHHHHHH-HHh----CCCEEEEcCCchhCCHHHH
Confidence 45778889999999887665432 222222211 1110000011233332 221 2345553 2 34444434
Q ss_pred HHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHH
Q 028770 80 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA 159 (204)
Q Consensus 80 ~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~ 159 (204)
..|.+. +.+|+|++|.+++++|+..+..-|. .. ..+..+. +....+.-.
T Consensus 92 ~~l~~~----~~vv~L~~~~e~~~~Ri~~~~~rP~---------------------~~-~~~~~~~----~~~l~~~R~- 140 (172)
T PRK05057 92 NRLSAR----GVVVYLETTIEKQLARTQRDKKRPL---------------------LQ-VDDPREV----LEALANERN- 140 (172)
T ss_pred HHHHhC----CEEEEEeCCHHHHHHHHhCCCCCCC---------------------CC-CCCHHHH----HHHHHHHHH-
Confidence 556554 3799999999999999975532221 10 1111111 222222222
Q ss_pred HHHHhhc-ceeEEeCC-CCHHHHHHHHHHHHH
Q 028770 160 VLSLYED-VTVEVNGS-VNKEDVFAQIDVALT 189 (204)
Q Consensus 160 v~~~y~~-~~~~Ida~-~~~~~V~~~i~~~l~ 189 (204)
.+|.. --+.||++ .+++++.+.|...+.
T Consensus 141 --~~Y~~~Ad~~idt~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 141 --PLYEEIADVTIRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred --HHHHhhCCEEEECCCCCHHHHHHHHHHHHh
Confidence 23433 22567865 699999999888764
No 80
>PLN02199 shikimate kinase
Probab=96.47 E-value=0.44 Score=40.19 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=82.5
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCCCCCcEEEe--ccCCCHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQENGWLLD--GYPRSLSQA 79 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~-~G~~vpde~i~~ll~~~l~~~~~~~~G~ILD--GfPrt~~Qa 79 (204)
..+|+.+|++.|+++.++.+... +..+ .++.. .|+..=-+.-.+++.+-... ...+|-- |.+-...-.
T Consensus 120 r~LA~~Lg~~fIDtD~lIe~~~~-G~sI----~eIf~~~GE~~FR~~E~e~L~~L~~~----~~~VIStGGG~V~~~~n~ 190 (303)
T PLN02199 120 KLMSKVLGYTFFDCDTLIEQAMN-GTSV----AEIFVHHGENFFRGKETDALKKLSSR----YQVVVSTGGGAVIRPINW 190 (303)
T ss_pred HHHHHHhCCCEEehHHHHHHHhc-CCCH----HHHHHHhCHHHHHHHHHHHHHHHHhc----CCEEEECCCcccCCHHHH
Confidence 45778899999999999998643 3333 33333 24322122333333332111 1223322 333333333
Q ss_pred HHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHH---HHHHHHHHHH
Q 028770 80 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKV---KLRLKTHHHN 156 (204)
Q Consensus 80 ~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i---~~Rl~~y~~~ 156 (204)
..|. .| .+|+|++|.+++.+|+.....+ . .| |... ++.+.+ ..++.. .
T Consensus 191 ~~L~-~G----~vV~Ldas~E~l~~RL~~~~~~---~-------RP---------LL~~--~~~d~~~~~~~~L~~---L 241 (303)
T PLN02199 191 KYMH-KG----ISIWLDVPLEALAHRIAAVGTD---S-------RP---------LLHD--ESGDAYSVAFKRLSA---I 241 (303)
T ss_pred HHHh-CC----eEEEEECCHHHHHHHHhhcCCC---C-------CC---------cCCC--CCcchhhhHHHHHHH---H
Confidence 4443 23 6999999999999999742100 0 00 1111 111111 122222 2
Q ss_pred HHHHHHHhhcceeEEe-------------CCCCHHHHHHHHHHHHHHHHhhhh
Q 028770 157 VEAVLSLYEDVTVEVN-------------GSVNKEDVFAQIDVALTNLLEQRK 196 (204)
Q Consensus 157 ~~~v~~~y~~~~~~Id-------------a~~~~~~V~~~i~~~l~~~~~~~~ 196 (204)
...-..+|..-=+.|| .+.+++++...|...+.+.+.+.+
T Consensus 242 ~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~~ 294 (303)
T PLN02199 242 WDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEE 294 (303)
T ss_pred HHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2222334543223455 468999999999999999886543
No 81
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.33 E-value=0.035 Score=43.21 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.9
Q ss_pred CCCCEEEEecCCHHHHHHHHhCCC
Q 028770 87 FQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 87 ~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
..||.+|+|++|++++.+|+..|.
T Consensus 123 ~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 123 LPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcC
Confidence 579999999999999999998774
No 82
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.27 E-value=0.066 Score=41.51 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcH
Q 028770 64 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 143 (204)
Q Consensus 64 ~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~ 143 (204)
..|||+..|-+. .+...+.+. ..|-.+|+|++|.+++.+|+..|..|. -..
T Consensus 76 ~~g~iv~s~~~~-~~R~~~r~~-~~~~~~v~l~a~~~~l~~Rl~~R~~~~---------------------------~~~ 126 (176)
T PRK09825 76 ETGFIVCSSLKK-QYRDILRKS-SPNVHFLWLDGDYETILARMQRRAGHF---------------------------MPP 126 (176)
T ss_pred CCEEEEEEecCH-HHHHHHHhh-CCCEEEEEEeCCHHHHHHHHhcccCCC---------------------------CCH
Confidence 579999888543 233344444 356789999999999999999885211 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHH
Q 028770 144 EKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 144 e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~ 192 (204)
+.+...+..|... +. =...++.||++++++++.+++...+...+
T Consensus 127 ~vl~~Q~~~~e~~--~~---~e~~~~~~d~~~~~~~~~~~~~~~~~~~~ 170 (176)
T PRK09825 127 DLLQSQFDALERP--CA---DEHDIARIDVNHDIENVTEQCRQAVQAFR 170 (176)
T ss_pred HHHHHHHHHcCCC--CC---CcCCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence 3333333333210 00 01258999999999999999988887654
No 83
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.20 E-value=0.13 Score=45.00 Aligned_cols=147 Identities=15% Similarity=0.187 Sum_probs=80.2
Q ss_pred hhHhCCceeCHHHHHHHHHHcCChhHHHHHHHH-----HcCCCCCHHH----------------------HHHHHHHHhc
Q 028770 6 YMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHM-----EKGQLVPDEI----------------------VVTMVKERLS 58 (204)
Q Consensus 6 a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l-----~~G~~vpde~----------------------i~~ll~~~l~ 58 (204)
.+++|++.|+++.+.++.+..+++.-..+.+.. ...+.+.-.. +...+.+.+.
T Consensus 21 L~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~~le~i~hP~I~~~i~~~i~ 100 (395)
T PRK03333 21 LAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARAVLNGIVHPLVGARRAELIA 100 (395)
T ss_pred HHHCCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345799999999999998876654322232221 1111111111 1222223332
Q ss_pred CCCCCCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCC
Q 028770 59 QPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR 138 (204)
Q Consensus 59 ~~~~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r 138 (204)
.. ....+|+.+-|-=.+ .. +. ...|.+|++++|.++.++|+..|+-
T Consensus 101 ~~--~~~~vvv~eipLL~E-~~-~~---~~~D~iI~V~ap~e~ri~Rl~~rRg--------------------------- 146 (395)
T PRK03333 101 AA--PEDAVVVEDIPLLVE-SG-MA---PLFHLVVVVDADVEVRVRRLVEQRG--------------------------- 146 (395)
T ss_pred hc--CCCCEEEEEeeeeec-CC-ch---hhCCEEEEEECCHHHHHHHHHhcCC---------------------------
Confidence 22 134577777653222 11 11 2358999999999999999987531
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHH
Q 028770 139 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 139 ~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~ 192 (204)
-+.+....|+...... ++- ... --+.||.+.+.+++..++...++..+
T Consensus 147 --~s~~~a~~ri~~Q~~~-e~k-~~~--AD~vIdN~~s~e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 147 --MAEADARARIAAQASD-EQR-RAV--ADVWLDNSGTPDELVEAVRALWADRL 194 (395)
T ss_pred --CCHHHHHHHHHhcCCh-HHH-HHh--CCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 0122333333321000 000 001 13568899999999999988887655
No 84
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.16 E-value=0.0063 Score=45.75 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=19.7
Q ss_pred CC-CCEEEEecCCHHHHHHHHhCCCc
Q 028770 87 FQ-PDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 87 ~~-p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
.. ||++|+|++|++++++|+..|+.
T Consensus 65 ~~~pdl~IYL~~~~e~~~~RI~kRgR 90 (146)
T PF01712_consen 65 PKSPDLIIYLDASPETCLERIKKRGR 90 (146)
T ss_dssp CHH-SEEEEEE--HHHHHHHHHHCTT
T ss_pred hccCCeEEEEeCCHHHHHHHHHHhCC
Confidence 35 99999999999999999999963
No 85
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.01 E-value=0.03 Score=43.38 Aligned_cols=98 Identities=14% Similarity=0.270 Sum_probs=58.3
Q ss_pred HhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCC-----CCC------------------HHHHHHHHHHHhcCC--CC
Q 028770 8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVP------------------DEIVVTMVKERLSQP--DS 62 (204)
Q Consensus 8 ~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~-----~vp------------------de~i~~ll~~~l~~~--~~ 62 (204)
++|+++|+++++.++.+..+++.+..+.+..-.+- .+. +.++-.++..++.+. ..
T Consensus 21 ~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~l~~i~hp~i~~~~~~~~~~~ 100 (179)
T cd02022 21 ELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKKLEAITHPLIRKEIEEQLAEA 100 (179)
T ss_pred HCCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37999999999999988887777777766642211 121 222223333332210 01
Q ss_pred CCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 63 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 63 ~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
...++++-.-|--.+.- +. ...|.++++++|.++.++|+..|.
T Consensus 101 ~~~~~vive~plL~e~~--~~---~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 101 RKEKVVVLDIPLLFETG--LE---KLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred cCCCEEEEEehHhhcCC--cH---HhCCeEEEEECCHHHHHHHHHHcC
Confidence 12356553344332210 11 246899999999999999998873
No 86
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.01 E-value=0.2 Score=45.72 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=57.6
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCCCCCcEEEe--ccCCCHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQENGWLLD--GYPRSLSQA 79 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~-~G~~vpde~i~~ll~~~l~~~~~~~~G~ILD--GfPrt~~Qa 79 (204)
..+|+++|+..|++++.+.+.. |..+.+++. .|+.---++-.+++++-+... ..+|-- |.|-+....
T Consensus 24 ~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~----~~VIs~GGG~v~~~~n~ 93 (542)
T PRK14021 24 KEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLEDF----DGIFSLGGGAPMTPSTQ 93 (542)
T ss_pred HHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CeEEECCCchhCCHHHH
Confidence 4688999999999999988764 334555443 354333344444444432221 223323 345555544
Q ss_pred HHHHHcCCCCCEEEEecCCHHHHHHHHhCC
Q 028770 80 TALKKYGFQPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 80 ~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r 109 (204)
..|.++.-.--.||+|+.|.+++.+|+..+
T Consensus 94 ~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 94 HALASYIAHGGRVVYLDADPKEAMERANRG 123 (542)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHhCC
Confidence 444321111137999999999999998654
No 87
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=95.95 E-value=0.37 Score=39.46 Aligned_cols=72 Identities=8% Similarity=0.058 Sum_probs=48.0
Q ss_pred CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028770 88 QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV 167 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~ 167 (204)
..|.++++.+|.++.++|+..|+ .-+.+.+.+|+..- ...-.......
T Consensus 136 ~~D~iv~V~a~~e~ri~RL~~R~-----------------------------g~s~eea~~Ri~~Q---~~~~ek~~~aD 183 (244)
T PTZ00451 136 FVSASVVVSCSEERQIERLRKRN-----------------------------GFSKEEALQRIGSQ---MPLEEKRRLAD 183 (244)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC-----------------------------CCCHHHHHHHHHhC---CCHHHHHHhCC
Confidence 35899999999999999998773 12356777777541 11100001112
Q ss_pred eeEEeCC--CCHHHHHHHHHHHHHHHH
Q 028770 168 TVEVNGS--VNKEDVFAQIDVALTNLL 192 (204)
Q Consensus 168 ~~~Ida~--~~~~~V~~~i~~~l~~~~ 192 (204)
+ .|+.+ ++.+++..++...+..+-
T Consensus 184 ~-VI~N~~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 184 Y-IIENDSADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred E-EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 3 56667 899999999998876644
No 88
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.83 E-value=0.32 Score=38.11 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=46.0
Q ss_pred EEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeE
Q 028770 91 LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVE 170 (204)
Q Consensus 91 ~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~ 170 (204)
.|+++.++.+++.+|+..| .+++++.+++|+..+...+.+. ..| .++.
T Consensus 119 ~I~i~~~s~~~l~~Rl~~R-----------------------------~~~~~~~i~~rl~~~~~~~~~~-~~~--d~vi 166 (205)
T PRK00300 119 SIFILPPSLEELERRLRGR-----------------------------GTDSEEVIARRLAKAREEIAHA-SEY--DYVI 166 (205)
T ss_pred EEEEECcCHHHHHHHHHhc-----------------------------CCCCHHHHHHHHHHHHHHHHhH-HhC--CEEE
Confidence 3444456677777777655 3456789999999887766542 223 2333
Q ss_pred EeCCCCHHHHHHHHHHHHHHH
Q 028770 171 VNGSVNKEDVFAQIDVALTNL 191 (204)
Q Consensus 171 Ida~~~~~~V~~~i~~~l~~~ 191 (204)
+| .++++++.++..++.+.
T Consensus 167 ~n--~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 167 VN--DDLDTALEELKAIIRAE 185 (205)
T ss_pred EC--CCHHHHHHHHHHHHHHH
Confidence 44 48999999999999876
No 89
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.83 E-value=0.13 Score=46.65 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=44.7
Q ss_pred CEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCC--CCcHHHHHHHHH--HHHHHHHHHHHHhh
Q 028770 90 DLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF--DDTEEKVKLRLK--THHHNVEAVLSLYE 165 (204)
Q Consensus 90 ~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~--dd~~e~i~~Rl~--~y~~~~~~v~~~y~ 165 (204)
++-|+|++|.++..+|...+.. .|. +.+.+.+.+-+. .+......+-..|.
T Consensus 422 dlKIfL~As~evRa~RR~~~l~-------------------------~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~ 476 (512)
T PRK13477 422 ELKIFLTASVEERARRRALDLQ-------------------------AQGFPVIDLEQLEAQIAERDRLDSTREIAPLRK 476 (512)
T ss_pred CEEEEEECCHHHHHHHHHhhhh-------------------------hCCCccCCHHHHHHHHHHHHhhhcccccccccc
Confidence 6899999999999998654411 111 111222222221 22222222333444
Q ss_pred c-ceeEEeC-CCCHHHHHHHHHHHHHH
Q 028770 166 D-VTVEVNG-SVNKEDVFAQIDVALTN 190 (204)
Q Consensus 166 ~-~~~~Ida-~~~~~~V~~~i~~~l~~ 190 (204)
. --+.||. ..++++|.+.|...+.+
T Consensus 477 a~dai~IDTs~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 477 ADDAIELITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred cCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 3 4567885 57999999999998865
No 90
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.47 E-value=0.19 Score=45.33 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=51.8
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCCCCCcEEE-ec--cCCCHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQENGWLL-DG--YPRSLS 77 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~-~G~~vpde~i~~ll~~~l~~~~~~~~G~IL-DG--fPrt~~ 77 (204)
+..+|+++|+.++++++++.+.. |..+.++.. .|+..--++-.+++++-.... +.|| .| .+.+..
T Consensus 17 ~~~La~~lg~~~id~D~~i~~~~------g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~-----~~Vis~Gggvv~~~~ 85 (488)
T PRK13951 17 GKRVSEVLDLQFIDMDEEIERRE------GRSVRRIFEEDGEEYFRLKEKELLRELVERD-----NVVVATGGGVVIDPE 85 (488)
T ss_pred HHHHHHHcCCeEEECcHHHHHHc------CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcC-----CEEEECCCccccChH
Confidence 34677889999999999987642 222233222 233222233344443322221 1222 33 233334
Q ss_pred HHHHHHHcCCCCCEEEEecCCHHHHHHHHhCC
Q 028770 78 QATALKKYGFQPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 78 Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r 109 (204)
..+.|.+ ..+|+|++|.+++.+|+..+
T Consensus 86 ~r~~l~~-----~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 86 NRELLKK-----EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred HHHHHhc-----CeEEEEECCHHHHHHHhccC
Confidence 4455543 35899999999999999654
No 91
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.43 E-value=0.19 Score=40.53 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.7
Q ss_pred chhhhhHhCCceeCHHHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAE 23 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~ 23 (204)
+..+|++||+.+++.|++.|..
T Consensus 21 ~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 21 AKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred HHHHHHHhCCCcccCchhHHHH
Confidence 3457899999999999998873
No 92
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.36 E-value=0.74 Score=36.63 Aligned_cols=71 Identities=7% Similarity=0.141 Sum_probs=47.9
Q ss_pred CCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028770 88 QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV 167 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~ 167 (204)
..|.++.+.||.++.++|+..|.- -+.+.+..|+..-....+.. ..-
T Consensus 128 ~~D~vi~V~a~~e~ri~Rl~~Rd~-----------------------------~s~~~a~~ri~~Q~~~eek~----~~a 174 (204)
T PRK14733 128 YLKKVIVIKADLETRIRRLMERDG-----------------------------KNRQQAVAFINLQISDKERE----KIA 174 (204)
T ss_pred hCCEEEEEECCHHHHHHHHHHcCC-----------------------------CCHHHHHHHHHhCCCHHHHH----HhC
Confidence 468999999999999999988741 13455566654321111111 001
Q ss_pred eeEEeCCC-CHHHHHHHHHHHHHHH
Q 028770 168 TVEVNGSV-NKEDVFAQIDVALTNL 191 (204)
Q Consensus 168 ~~~Ida~~-~~~~V~~~i~~~l~~~ 191 (204)
=+.||.+. +.+++.+++..++.+.
T Consensus 175 D~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 175 DFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred CEEEECcCCCHHHHHHHHHHHHHHH
Confidence 13688888 9999999999888765
No 93
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.32 E-value=0.026 Score=41.53 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=49.5
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..||+++|+++++.+.+-.+++.. ........ .. -++.+.+++.+ +. ...+||+||-.... .
T Consensus 16 a~~la~~~~~~~~~~~~i~~e~~~~------~~~~~~~~-~~-i~~~l~~~~~~-~~----~~~~~Vidg~~~~~--~-- 78 (147)
T cd02020 16 AKLLAKKLGLPYLDTGGIRTEEVGK------LASEVAAI-PE-VRKALDERQRE-LA----KKPGIVLEGRDIGT--V-- 78 (147)
T ss_pred HHHHHHHhCCceeccccCCHHHHHH------HHHHhccc-Hh-HHHHHHHHHHH-Hh----hCCCEEEEeeeeee--E--
Confidence 4578999999999998543332221 11111000 00 01222222222 22 13469999964211 1
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCC
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r 109 (204)
+ ....+.+|+|++|++...+|+..|
T Consensus 79 ~---~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 79 V---FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred E---cCCCCEEEEEECCHHHHHHHHHHH
Confidence 1 123679999999999999999875
No 94
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=95.24 E-value=0.55 Score=37.39 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=85.7
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHH-----HcCCCCCHHHHHHHHH----------------------H
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHM-----EKGQLVPDEIVVTMVK----------------------E 55 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l-----~~G~~vpde~i~~ll~----------------------~ 55 (204)
|++.+.+|++.|+.+.+-|+.++.+++-...|.+.. .+++-+.-+.+-+++. +
T Consensus 18 s~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~~Ln~IthP~Ir~em~k 97 (225)
T KOG3220|consen 18 SQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQALNKITHPAIRKEMFK 97 (225)
T ss_pred HHHHHHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 455578899999999999999998888777776543 2333333333333331 1
Q ss_pred HhcCCCCCCCcEEEeccCCCHHHHHHHHH-cCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhh
Q 028770 56 RLSQPDSQENGWLLDGYPRSLSQATALKK-YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAAR 134 (204)
Q Consensus 56 ~l~~~~~~~~G~ILDGfPrt~~Qa~~l~~-~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~r 134 (204)
++...-....-||+=..|- +|+. +--....+|...||.++-++|+..|.
T Consensus 98 e~~~~~l~G~r~ivlDiPL------LFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd------------------------ 147 (225)
T KOG3220|consen 98 EILKLLLRGYRVIVLDIPL------LFEAKLLKICHKTVVVTCDEELQLERLVERD------------------------ 147 (225)
T ss_pred HHHHHHhcCCeEEEEechH------HHHHhHHhheeeEEEEEECcHHHHHHHHHhc------------------------
Confidence 1110000111233323332 2222 11123468888999999999998773
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 135 LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 135 l~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
.-+++..+.|+..-- |+.+.-+.-=+.||.+.++++..+++..++..
T Consensus 148 -----~lse~dAe~Rl~sQm----p~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~ 194 (225)
T KOG3220|consen 148 -----ELSEEDAENRLQSQM----PLEKKCELADVVIDNNGSLEDLYEQVEKVLAL 194 (225)
T ss_pred -----cccHHHHHHHHHhcC----CHHHHHHhhheeecCCCChHHHHHHHHHHHHH
Confidence 223455566654331 21111111234799999999999999887653
No 95
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.08 E-value=0.1 Score=38.25 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=56.3
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCCh----hHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSE----NGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ 78 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~----~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Q 78 (204)
..+++.++..+|+.+++.+.......+ ... ..+.. .+.+...+...+... ..+|+|+.-.+..+
T Consensus 17 ~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~l~~g----~~~vvd~~~~~~~~ 84 (143)
T PF13671_consen 17 KRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIE-AEERA-------YQILNAAIRKALRNG----NSVVVDNTNLSREE 84 (143)
T ss_dssp HHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHH-HHHHH-------HHHHHHHHHHHHHTT-----EEEEESS--SHHH
T ss_pred HHHHHHCCCEEEeHHHHHHHHcccccccchhHHH-HHHHH-------HHHHHHHHHHHHHcC----CCceeccCcCCHHH
Confidence 345667789999987765543222111 111 11111 124455566666543 45899976555555
Q ss_pred HHHHHH---cCCCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 79 ATALKK---YGFQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 79 a~~l~~---~~~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
...+.+ ....+-.+|+|++|.+++.+|+..|..
T Consensus 85 r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 85 RARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp HHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence 544432 223466899999999999999999854
No 96
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.56 Score=37.51 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=22.4
Q ss_pred CCCEEEEecCCHHHHHHHHhCCCc
Q 028770 88 QPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
.||++|+|+|+-+++++|+..|+.
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR 149 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGR 149 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCC
Confidence 799999999999999999999853
No 97
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.42 E-value=1.2 Score=33.82 Aligned_cols=142 Identities=17% Similarity=0.154 Sum_probs=79.9
Q ss_pred hhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHH---HHHHhcCCC-CCCCcEEEeccCCCHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTM---VKERLSQPD-SQENGWLLDGYPRSLSQ 78 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~l---l~~~l~~~~-~~~~G~ILDGfPrt~~Q 78 (204)
+.||+++|...|.-++|=-. ..| +.|.+|.++.|+--... |..++.+.. ....++|... -=-.+
T Consensus 13 ~~lA~~lg~~fidGDdlHp~---------aNi-~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS--ALKr~ 80 (161)
T COG3265 13 SALAERLGAKFIDGDDLHPP---------ANI-EKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS--ALKRS 80 (161)
T ss_pred HHHHHHcCCceecccccCCH---------HHH-HHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH--HHHHH
Confidence 46777888777775544211 112 23678888888743332 334443321 1123444321 11223
Q ss_pred HHHHHHcCCCCC-EEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 028770 79 ATALKKYGFQPD-LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV 157 (204)
Q Consensus 79 a~~l~~~~~~p~-~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~ 157 (204)
-..+-.. ..|+ .+|+|+-+.+++.+|+..|.-| |.|+. -+. .+|....
T Consensus 81 YRD~LR~-~~~~~~Fv~L~g~~~~i~~Rm~~R~gH----------FM~~~-----------------ll~---SQfa~LE 129 (161)
T COG3265 81 YRDLLRE-ANPGLRFVYLDGDFDLILERMKARKGH----------FMPAS-----------------LLD---SQFATLE 129 (161)
T ss_pred HHHHHhc-cCCCeEEEEecCCHHHHHHHHHhcccC----------CCCHH-----------------HHH---HHHHHhc
Confidence 3333333 2444 6899999999999999999643 34432 111 1221111
Q ss_pred HHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 158 EAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 158 ~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
.|-- .+.++.||.++++++|.+++...+.+
T Consensus 130 ~P~~---de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 130 EPGA---DEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred CCCC---CCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence 1100 12688999999999999999888764
No 98
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.25 E-value=0.76 Score=34.96 Aligned_cols=92 Identities=14% Similarity=0.007 Sum_probs=55.8
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHH
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE 144 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e 144 (204)
.++|+-.|.+ ..+.+.+.+. ..|-.+|+|++|.+++.+|+..|.-|. ...+
T Consensus 69 ~~viv~s~~~-~~~r~~~~~~-~~~~~~v~l~a~~~~l~~Rl~~R~~~~---------------------------a~~~ 119 (163)
T PRK11545 69 VSLIVCSALK-KHYRDLLREG-NPNLSFIYLKGDFDVIESRLKARKGHF---------------------------FKTQ 119 (163)
T ss_pred ceEEEEecch-HHHHHHHHcc-CCCEEEEEEECCHHHHHHHHHhccCCC---------------------------CCHH
Confidence 3456655643 2233334443 456789999999999999999985211 0223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 145 KVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 145 ~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
.+...+..|. +...- ...++.||++.+++++..++...+.+
T Consensus 120 vl~~Q~~~~e----p~~~~-e~~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 120 MLVTQFETLQ----EPGAD-ETDVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred HHHHHHHHcC----CCCCC-CCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3333332221 11000 02478999999999999999888754
No 99
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=94.04 E-value=0.5 Score=39.54 Aligned_cols=49 Identities=29% Similarity=0.495 Sum_probs=37.4
Q ss_pred CCCcEEEeccCCC-HHHHHHHHHcC---------------------CCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 63 QENGWLLDGYPRS-LSQATALKKYG---------------------FQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 63 ~~~G~ILDGfPrt-~~Qa~~l~~~~---------------------~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
..+|+||+.-|-+ ..=++.|...| .+|.+||+|++|...+.+++..|..
T Consensus 170 TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 170 TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIKRRGN 240 (393)
T ss_pred cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHHhcCC
Confidence 4689999998875 33444444322 4799999999999999999998863
No 100
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.74 E-value=1.4 Score=33.65 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=30.5
Q ss_pred CCcEEEec-cCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 64 ENGWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 64 ~~G~ILDG-fPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
...+|+|. |+.....-+.+......|-..|++.||.+++.+|...|.
T Consensus 85 G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 85 GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred CCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 35688985 662222223333332245689999999999999998874
No 101
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.61 E-value=2.5 Score=32.19 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=53.1
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHH
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE 144 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e 144 (204)
..+|+|. +...+..+.+....|..++++..+++.+.+|+..|. +++.+
T Consensus 92 ~~vi~d~---~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~-----------------------------~~~~~ 139 (180)
T TIGR03263 92 KDVLLEI---DVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRG-----------------------------TDSEE 139 (180)
T ss_pred CeEEEEC---CHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC-----------------------------CCCHH
Confidence 3467774 444445454443344456666777788888887653 34567
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHH
Q 028770 145 KVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 145 ~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
.+++|+..+...... ..+| .++.++ + +.++.++++...+.
T Consensus 140 ~i~~rl~~~~~~~~~-~~~~--d~~i~n-~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 140 VIERRLAKAKKEIAH-ADEF--DYVIVN-D-DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHHHHHHHHHHhc-cccC--cEEEEC-C-CHHHHHHHHHHHHh
Confidence 889999877644322 1111 233344 3 78999988887764
No 102
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.41 Score=37.58 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=44.2
Q ss_pred CCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHH
Q 028770 123 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL 191 (204)
Q Consensus 123 ~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~ 191 (204)
..||...+...||.+|..|+++.+.+||...+........ | ..+.| +-+.+..++.+.+++...
T Consensus 120 i~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~-f--dyviv--Ndd~e~a~~~l~~ii~ae 183 (191)
T COG0194 120 ILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADE-F--DYVIV--NDDLEKALEELKSIILAE 183 (191)
T ss_pred EcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh-C--CEEEE--CccHHHHHHHHHHHHHHH
Confidence 3455555555666677788999999999988777765444 3 33334 456778888888877654
No 103
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=93.46 E-value=2.5 Score=35.37 Aligned_cols=114 Identities=13% Similarity=0.266 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCc--EEEec----cCCCHHH-HHHHHHcCCCCCEEEEecCCHHHHHHHHhC-CCcCCCC
Q 028770 44 VPDEIVVTMVKERLSQPDSQENG--WLLDG----YPRSLSQ-ATALKKYGFQPDLFILLEVPEDTLVERVVG-RRLDPVT 115 (204)
Q Consensus 44 vpde~i~~ll~~~l~~~~~~~~G--~ILDG----fPrt~~Q-a~~l~~~~~~p~~vi~L~~~~~~~~~R~~~-r~~~~~~ 115 (204)
+|..++-+++........ ..+. +++|- |...+.+ ...+.+.++. -.+|+|+++++++++|... |+.||..
T Consensus 32 lP~~Ll~~l~~~~~~~~~-~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~-~~ilFLdA~d~~LirRy~eTRR~HPL~ 109 (284)
T PF03668_consen 32 LPPSLLPQLIELLAQSNS-KIEKVAIVIDIRSREFFEDLFEALDELRKKGID-VRILFLDASDEVLIRRYSETRRRHPLS 109 (284)
T ss_pred CcHHHHHHHHHHHHhcCC-CCceEEEEEeCCChHHHHHHHHHHHHHHhcCCc-eEEEEEECChHHHHHHHHhccCCCCCC
Confidence 788999988865332221 1233 45563 2222222 2334445443 4699999999999999988 7877754
Q ss_pred CceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeC-CCCHHHHHHHHHHHH
Q 028770 116 GKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVAL 188 (204)
Q Consensus 116 g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida-~~~~~~V~~~i~~~l 188 (204)
.. ....+. +..-++...++.+.- =+.||. +.++.+..+.|...+
T Consensus 110 ~~----------------------~~~le~----I~~Er~~L~~lr~~A---d~vIDTs~l~~~~Lr~~i~~~~ 154 (284)
T PF03668_consen 110 SD----------------------GSLLEA----IEKERELLEPLRERA---DLVIDTSNLSVHQLRERIRERF 154 (284)
T ss_pred CC----------------------CCcHHH----HHHHHHHHHHHHHhC---CEEEECCCCCHHHHHHHHHHHh
Confidence 31 112222 344455566665432 246895 566766666665544
No 104
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.36 E-value=0.59 Score=34.59 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCcEEEeccCCCHHHHHHHHHcC-CCCCEEEEecCCHHHHHHHHhCCC
Q 028770 64 ENGWLLDGYPRSLSQATALKKYG-FQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 64 ~~G~ILDGfPrt~~Qa~~l~~~~-~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
..++|+|.---+..+...+.... ..+-.+|+|++|.+++.+|+..|.
T Consensus 72 ~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 72 GEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 44688874223344444555431 245679999999999999998884
No 105
>PRK12338 hypothetical protein; Provisional
Probab=93.16 E-value=3 Score=35.56 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.3
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHc
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAA 26 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~ 26 (204)
++.+|+++|+.|+..+|.+|+.+..
T Consensus 21 a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 21 ASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred HHHHHHHCCCeEEccChHHHHHHcC
Confidence 5678999999999889999997663
No 106
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.55 E-value=0.02 Score=40.86 Aligned_cols=96 Identities=19% Similarity=0.336 Sum_probs=46.5
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA 81 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~ 81 (204)
+..||++||+++++++++++..-....+.+. .+... ...+.+...+..... .....+||+||. +. ... .
T Consensus 16 a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~l~~~~~--~~~~~~~ii~g~-~~-~~~-~ 84 (121)
T PF13207_consen 16 AKELAERLGFPVISMDDLIREPGWIERDDDE--REYID----ADIDLLDDILEQLQN--KPDNDNWIIDGS-YE-SEM-E 84 (121)
T ss_dssp HHHHHHHHTCEEEEEHHHHCCGTHCHGCTTC--CHHHH----HHHHHHHHHHHHHHE--TTT--EEEEECC-SC-HCC-H
T ss_pred HHHHHHHHCCeEEEecceEEeccccccCcch--hhHHH----HHHHHHHHHHHhhhc--cCCCCeEEEeCC-Cc-cch-h
Confidence 5678999999999999954221110000000 00000 001222333333222 123568999992 11 100 1
Q ss_pred HHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 82 LKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 82 l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
+ .....+.+|+|+++.+++..|+..|+
T Consensus 85 ~--~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 85 I--RLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp S--CCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred h--hhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 1 11124579999999986666666553
No 107
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=91.40 E-value=5.9 Score=32.90 Aligned_cols=117 Identities=15% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHh-cCCCCCCCcEEEec----cCCCHHHH-HHHHHcC-CCCCEEEEecCCHHHHHHHHhC-CCcCCCC
Q 028770 44 VPDEIVVTMVKERL-SQPDSQENGWLLDG----YPRSLSQA-TALKKYG-FQPDLFILLEVPEDTLVERVVG-RRLDPVT 115 (204)
Q Consensus 44 vpde~i~~ll~~~l-~~~~~~~~G~ILDG----fPrt~~Qa-~~l~~~~-~~p~~vi~L~~~~~~~~~R~~~-r~~~~~~ 115 (204)
+|.+++-+++.-.. .+....+-.+++|= |+..+.|. ..+...+ +.| .+++|+.+++++++|... |+.||.+
T Consensus 32 LPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~ 110 (286)
T COG1660 32 LPPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSHPLS 110 (286)
T ss_pred CCHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHHHHHHHHHhcCCCCc-eEEEEECchhHHHHHHhhhhhcCCCC
Confidence 78889888886332 22222233466662 33344332 3344443 333 599999999999999988 8888865
Q ss_pred CceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeC-CCCHHHHHHHHHHHHHH
Q 028770 116 GKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNG-SVNKEDVFAQIDVALTN 190 (204)
Q Consensus 116 g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida-~~~~~~V~~~i~~~l~~ 190 (204)
+. ++ +..-+..-++...|+.+.- =..||. +.++.++.+.|...+..
T Consensus 111 ~~-------------------~~-------l~~~I~~ERelL~pLk~~A---~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 111 ED-------------------GL-------LLEAIAKERELLAPLREIA---DLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred cc-------------------Cc-------HHHHHHHHHHHHHHHHHHh---hhEeecccCCHHHHHHHHHHHHcc
Confidence 42 11 2223444455555554431 136884 77888888888877763
No 108
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=91.39 E-value=5.8 Score=33.29 Aligned_cols=117 Identities=15% Similarity=0.238 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEeccCC-----CHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhC-CCcCCCCCc
Q 028770 44 VPDEIVVTMVKERLSQPDSQENGWLLDGYPR-----SLSQATALKKYGFQPDLFILLEVPEDTLVERVVG-RRLDPVTGK 117 (204)
Q Consensus 44 vpde~i~~ll~~~l~~~~~~~~G~ILDGfPr-----t~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~-r~~~~~~g~ 117 (204)
+|.+++.+++...........--+++|---+ -.+....|.+.|. +-.+|+|+++.+++.+|+.. |+.+|..
T Consensus 37 ~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~-~~~iI~L~a~~e~L~~Rl~~~rr~RPLl-- 113 (288)
T PRK05416 37 LPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERGI-DVRVLFLDASDEVLIRRYSETRRRHPLS-- 113 (288)
T ss_pred cCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcCC-cEEEEEEECCHHHHHHHHhhcccCCCcc--
Confidence 4556666665433222011112355665211 1133444555543 44689999999999999975 3333321
Q ss_pred eecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCC-CCHHHHHHHHHHHHHH
Q 028770 118 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTN 190 (204)
Q Consensus 118 ~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~-~~~~~V~~~i~~~l~~ 190 (204)
.. .+..+. +..-++...+ +|..-=+.||.+ .+++++.+.|.+.+..
T Consensus 114 -------------------~~-~~l~e~----I~~eR~~l~p---l~~~ADivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 114 -------------------GD-GSLLEG----IELERELLAP---LRERADLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred -------------------CC-ccHHHH----HHHHHhhhhh---HHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 11 111121 2222222233 232112567865 5999999999887743
No 109
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.88 E-value=2.2 Score=33.25 Aligned_cols=85 Identities=18% Similarity=0.302 Sum_probs=49.4
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCC--EEEEecCCH-HHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCC
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPD--LFILLEVPE-DTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 141 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~--~vi~L~~~~-~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd 141 (204)
+-.|+|-=|....+++.. .|+ .+|++..|+ +++.+|+..| .++
T Consensus 95 ~~~i~d~~~~g~~~l~~~-----~~~~~~~Ifi~pps~e~l~~RL~~R-----------------------------~~~ 140 (186)
T PRK14737 95 RSAIMDIDVQGAKIIKEK-----FPERIVTIFIEPPSEEEWEERLIHR-----------------------------GTD 140 (186)
T ss_pred CeEEEEcCHHHHHHHHHh-----CCCCeEEEEEECCCHHHHHHHHHhc-----------------------------CCC
Confidence 345677655555554432 244 467777654 6667776655 334
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-ceeEEeCCCCHHHHHHHHHHHHH
Q 028770 142 TEEKVKLRLKTHHHNVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 142 ~~e~i~~Rl~~y~~~~~~v~~~y~~-~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
+++.+++|+........ +.. -=..|+.+ +.++..+++..+|.
T Consensus 141 s~e~i~~Rl~~~~~e~~-----~~~~~D~vI~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 141 SEESIEKRIENGIIELD-----EANEFDYKIIND-DLEDAIADLEAIIC 183 (186)
T ss_pred CHHHHHHHHHHHHHHHh-----hhccCCEEEECc-CHHHHHHHHHHHHh
Confidence 56788999886432222 211 11234444 88999888887765
No 110
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=90.77 E-value=3.4 Score=34.97 Aligned_cols=107 Identities=11% Similarity=0.103 Sum_probs=54.4
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCC--hh--HH--HHHHHHH--cCCCCCHH-----------HHHHHHHHHhcCCCC
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGS--EN--GK--RAKEHME--KGQLVPDE-----------IVVTMVKERLSQPDS 62 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t--~~--g~--~i~~~l~--~G~~vpde-----------~i~~ll~~~l~~~~~ 62 (204)
+..||++||+.++--+|.+|+.+..-. +. +. ..-..+. .+..-|++ .+...+..-+...-.
T Consensus 109 A~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~~~~~v~~gi~~~I~~~~~ 188 (301)
T PRK04220 109 AFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFERHVEPVSVGVEAVIERALK 188 (301)
T ss_pred HHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999986544888887666311 10 00 0001111 11122332 211112222222111
Q ss_pred CCCcEEEeccCCCHHHHHHHHHcCCCCC-EEEEecCCH-HHHHHHHhCCC
Q 028770 63 QENGWLLDGYPRSLSQATALKKYGFQPD-LFILLEVPE-DTLVERVVGRR 110 (204)
Q Consensus 63 ~~~G~ILDGfPrt~~Qa~~l~~~~~~p~-~vi~L~~~~-~~~~~R~~~r~ 110 (204)
.....|++|.--.....+.+... .|+ ..+.+.+++ +...+|+..|.
T Consensus 189 ~g~s~IiEGvhl~P~~i~~~~~~--~~~~i~~~l~i~~ee~h~~RF~~R~ 236 (301)
T PRK04220 189 EGISVIIEGVHIVPGFIKEKYLE--NPNVFMFVLTLSDEEAHKARFYARA 236 (301)
T ss_pred hCCcEEEecCCCCHHHHHHhhhc--CCCEEEEEEEECCHHHHHHHHHHHH
Confidence 24568999987777665554332 244 345555544 78888988774
No 111
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=90.69 E-value=7.7 Score=31.25 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.6
Q ss_pred chhhhhHhCCceeCHHHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAE 23 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~ 23 (204)
|..+|++|||.|+++|-+-|..
T Consensus 21 ak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 21 AKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred HHHHHHHhCCCeecccHHHHHH
Confidence 4678999999999999999974
No 112
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.25 E-value=2.5 Score=33.23 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=30.1
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.-||+||++--..+ .+.. ..|.+|++++|.++++.|+..|.
T Consensus 107 ~~vIieG~~~~~~~--~~~~---~~d~~I~v~~~~~~~l~R~~~R~ 147 (207)
T TIGR00235 107 DVVILEGIMPLFDE--RLRD---LMDLKIFVDTPLDIRLIRRIERD 147 (207)
T ss_pred CEEEEEehhhhchH--hHHH---hCCEEEEEECChhHHHHHHHHHH
Confidence 44789999654321 2322 36899999999999999988774
No 113
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=89.18 E-value=0.68 Score=43.71 Aligned_cols=29 Identities=3% Similarity=0.169 Sum_probs=23.3
Q ss_pred ceeEEe-CCCCHHHHHHHHHHHHHHHHhhh
Q 028770 167 VTVEVN-GSVNKEDVFAQIDVALTNLLEQR 195 (204)
Q Consensus 167 ~~~~Id-a~~~~~~V~~~i~~~l~~~~~~~ 195 (204)
-.+.|| ...++++|++.|...+...+...
T Consensus 207 da~~idts~~~~~~v~~~i~~~i~~~~~~~ 236 (712)
T PRK09518 207 GVTTLDNSDLDFDETLDLLIGLVEDAIEEQ 236 (712)
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHhhhhhh
Confidence 456777 58899999999999998777543
No 114
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=88.68 E-value=1.2 Score=34.62 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=53.4
Q ss_pred hhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHH-----cCCCCCHHHHH----------------------HHHHHH
Q 028770 4 SSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-----KGQLVPDEIVV----------------------TMVKER 56 (204)
Q Consensus 4 ~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~-----~G~~vpde~i~----------------------~ll~~~ 56 (204)
++.+++|++.|+++++.++.+..+++....+.+..- ..+.+.-..+. +.+.++
T Consensus 18 ~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~~L~~iihP~I~~~~~~~ 97 (180)
T PF01121_consen 18 KILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLKKLENIIHPLIREEIEKF 97 (180)
T ss_dssp HHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHHH
Confidence 344579999999999999888877776666654332 22222222222 222223
Q ss_pred hcCCCCCCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCC
Q 028770 57 LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 57 l~~~~~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r 109 (204)
+..... ..-+|+| .|-=.+ . .+ ....|.++.+.||.++-++|+..|
T Consensus 98 ~~~~~~-~~~~v~e-~pLL~E-~-~~---~~~~D~vi~V~a~~e~ri~Rl~~R 143 (180)
T PF01121_consen 98 IKRNKS-EKVVVVE-IPLLFE-S-GL---EKLCDEVIVVYAPEEIRIKRLMER 143 (180)
T ss_dssp HHHCHS-TSEEEEE--TTTTT-T-TG---GGGSSEEEEEE--HHHHHHHHHHH
T ss_pred HHhccC-CCEEEEE-cchhhh-h-hH---hhhhceEEEEECCHHHHHHHHHhh
Confidence 332221 1223333 332111 0 11 123689999999999999999887
No 115
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=88.49 E-value=6.7 Score=36.80 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.3
Q ss_pred chhhhhHhCCceeCHHHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAE 23 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~ 23 (204)
+..+|+++|+.|++.|++.|..
T Consensus 459 ~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 459 AARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred HHHHHHHhCCeEecHHHhhhHH
Confidence 3568999999999999999985
No 116
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=87.08 E-value=2.9 Score=36.01 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=30.4
Q ss_pred EEEec-cCC-C-HHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 67 WLLDG-YPR-S-LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 67 ~ILDG-fPr-t-~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
+|+|+ |.. + ..++..+.+.-..+-.+|++++|.+++++|...|.
T Consensus 130 vilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R~ 176 (340)
T TIGR03575 130 LVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQRP 176 (340)
T ss_pred ceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcCC
Confidence 67765 422 2 23455555443455689999999999999998884
No 117
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=85.15 E-value=4.1 Score=31.55 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=50.0
Q ss_pred EEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeE
Q 028770 91 LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVE 170 (204)
Q Consensus 91 ~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~ 170 (204)
.++.|.++++++.+|+..|+- .+.|.|..|+..-...+.. ..-+++
T Consensus 117 lvv~ita~p~VLaqRL~~RGR-----------------------------Es~eeI~aRL~R~a~~~~~-----~~dv~~ 162 (192)
T COG3709 117 LVVCITASPEVLAQRLAERGR-----------------------------ESREEILARLARAARYTAG-----PGDVTT 162 (192)
T ss_pred eeEEEecCHHHHHHHHHHhcc-----------------------------CCHHHHHHHHHhhcccccC-----CCCeEE
Confidence 689999999999999988852 2567778887643221110 247999
Q ss_pred EeCCCCHHHHHHHHHHHHHHH
Q 028770 171 VNGSVNKEDVFAQIDVALTNL 191 (204)
Q Consensus 171 Ida~~~~~~V~~~i~~~l~~~ 191 (204)
||.++..+.--+.+.+.|...
T Consensus 163 idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 163 IDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred EcCCCcHHHHHHHHHHHHHhh
Confidence 999999999988888877743
No 118
>PRK05480 uridine/cytidine kinase; Provisional
Probab=83.89 E-value=6.6 Score=30.79 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=28.0
Q ss_pred cEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 66 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 66 G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
-+|+||..--.. ..+. -..|.+|++++|.++++.|...|.
T Consensus 108 ~vivEg~~l~~~--~~~~---~~~d~~I~v~~~~~~~~~R~~~Rd 147 (209)
T PRK05480 108 VIILEGILLLED--ERLR---DLMDIKIFVDTPLDIRLIRRLKRD 147 (209)
T ss_pred EEEEEeehhcCc--hhHh---hhhceeEEEeCChhHHHHHHHhhc
Confidence 467799743211 1122 236899999999999999988875
No 119
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.14 E-value=5.3 Score=32.23 Aligned_cols=45 Identities=27% Similarity=0.234 Sum_probs=31.8
Q ss_pred cEEE-ec--cCCCHH-HHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 66 GWLL-DG--YPRSLS-QATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 66 G~IL-DG--fPrt~~-Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
-||| |. |-.+++ |.....+....+-.+|++-||.++|++|-.+|.
T Consensus 75 ~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg 123 (261)
T COG4088 75 YLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG 123 (261)
T ss_pred eEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC
Confidence 3544 54 334443 766666655678899999999999999986664
No 120
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=82.06 E-value=9.6 Score=29.23 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=30.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 138 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 138 r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
|.+++.+.+.+|+..+..... +|..-=..|. +.+.++.++.|..+|++
T Consensus 135 r~~~~~~~i~~r~~~~~~~~~----~~~~fd~vi~-n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 135 RGDESEEEIEERLERAEKEFE----HYNEFDYVIV-NDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp TTHCHHHHHHHHHHHHHHHHG----GGGGSSEEEE-CSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHh----HhhcCCEEEE-CcCHHHHHHHHHHHHHh
Confidence 444566678888877654333 2322112333 34899999999998875
No 121
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=81.20 E-value=7.5 Score=31.04 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 86 GFQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 86 ~~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
.+.+|.+|+|..++++|.+|+..|..
T Consensus 151 ~v~~dgiIYLrasPetc~~Ri~~R~R 176 (244)
T KOG4235|consen 151 DVSLDGIIYLRASPETCYKRIYLRAR 176 (244)
T ss_pred ccccceEEEeecChHHHHHHHHHHhh
Confidence 47899999999999999999998854
No 122
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=80.97 E-value=40 Score=32.64 Aligned_cols=135 Identities=20% Similarity=0.365 Sum_probs=83.9
Q ss_pred hHHHHHHHHHcCCC--------CCHHHHHH-------------HHHHHhcCCCCCCCcEEEeccCCCHHHHHHHHHcCCC
Q 028770 30 NGKRAKEHMEKGQL--------VPDEIVVT-------------MVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQ 88 (204)
Q Consensus 30 ~g~~i~~~l~~G~~--------vpde~i~~-------------ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~l~~~~~~ 88 (204)
.-..+++.+++|++ ..||.+.. .|.+.........-||=||=|-.+..||..|..+|
T Consensus 109 ~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslfAqmG-- 186 (996)
T KOG1959|consen 109 QKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLFAQMG-- 186 (996)
T ss_pred HHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHHHHhC--
Confidence 35677888888874 34554332 22333332222357999999999999999998876
Q ss_pred CCEEEEecCCHHHHHHHHhCCCc-------CC-------CCCceecccCCCCCch--Hh-h--hhccCCCCCcHHHHHHH
Q 028770 89 PDLFILLEVPEDTLVERVVGRRL-------DP-------VTGKIYHVKYSPPETD--EI-A--ARLTKRFDDTEEKVKLR 149 (204)
Q Consensus 89 p~~vi~L~~~~~~~~~R~~~r~~-------~~-------~~g~~y~~~~~pp~~~--~~-~--~rl~~r~dd~~e~i~~R 149 (204)
.|.+++=-++-+.=-+|+..+.. +. =||-.|+ .++||+-- ++ | +++.....-.+-.++.|
T Consensus 187 fd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n-~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~NVker 265 (996)
T KOG1959|consen 187 FDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYN-HYSPPPGFCFDVLCGDDPIIDGPRSYDYNVKER 265 (996)
T ss_pred ccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhcccc-CCCCCCCceeccccCCCCCCCCCCCCCccHHHH
Confidence 45666666666666667665421 11 2455566 67777531 11 1 22221111123368999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 028770 150 LKTHHHNVEAVLSLYEDV 167 (204)
Q Consensus 150 l~~y~~~~~~v~~~y~~~ 167 (204)
.+.|-.......++|..+
T Consensus 266 Vd~Fv~~a~~~a~~~Rtn 283 (996)
T KOG1959|consen 266 VDDFVAYAKNQAAYYRTN 283 (996)
T ss_pred HHHHHHHHHHhHhheecc
Confidence 999999999999999854
No 123
>PLN02772 guanylate kinase
Probab=79.02 E-value=29 Score=30.62 Aligned_cols=63 Identities=25% Similarity=0.441 Sum_probs=39.9
Q ss_pred CCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHH--HHhhcceeEEeCCCCHHHHHHHHHHHHH
Q 028770 123 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL--SLYEDVTVEVNGSVNKEDVFAQIDVALT 189 (204)
Q Consensus 123 ~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~--~~y~~~~~~Ida~~~~~~V~~~i~~~l~ 189 (204)
+.||...++..||..|..++++.+++|+..+........ .+| -.+.+|. +.++-++.+.++|.
T Consensus 253 I~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~f--D~vIvND--dLe~A~~~L~~iL~ 317 (398)
T PLN02772 253 ICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIF--DHILYND--NLEECYKNLKKLLG 317 (398)
T ss_pred EeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCC--CEEEECC--CHHHHHHHHHHHHh
Confidence 445555555566666666778999999998865443211 112 2333443 78888888888775
No 124
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=78.33 E-value=10 Score=34.72 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=50.0
Q ss_pred hhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCC---HHHHH
Q 028770 4 SSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRS---LSQAT 80 (204)
Q Consensus 4 ~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt---~~Qa~ 80 (204)
.+++..|..+||.+++ .. . +.....+...|.+ ...+|+|.==.+ +.+..
T Consensus 388 ~l~~~~g~~~vn~D~l-g~-----------~------------~~~~~~a~~~L~~----G~sVVIDaTn~~~~~R~~~i 439 (526)
T TIGR01663 388 KFFQPAGYKHVNADTL-GS-----------T------------QNCLTACERALDQ----GKRCAIDNTNPDAASRAKFL 439 (526)
T ss_pred HHHHHcCCeEECcHHH-HH-----------H------------HHHHHHHHHHHhC----CCcEEEECCCCCHHHHHHHH
Confidence 4455668999998765 11 0 1123344555554 346899884233 33444
Q ss_pred HHHHcCCCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 81 ALKKYGFQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 81 ~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
.+.+...-|-.++++++|.+++.+|...|..
T Consensus 440 ~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 440 QCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred HHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 4433323366899999999999999988854
No 125
>PRK06547 hypothetical protein; Provisional
Probab=78.17 E-value=2 Score=33.08 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=51.1
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHH-HHHcCCCC--CHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKE-HMEKGQLV--PDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ 78 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~-~l~~G~~v--pde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Q 78 (204)
++.+++.+|+..++++++....-. -+.....+.+ .+..|+.. |=+....... ...... ....+|++|----..+
T Consensus 32 a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~-~~~~l~-~~~vVIvEG~~al~~~ 108 (172)
T PRK06547 32 AGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPG-DWVSVE-PGRRLIIEGVGSLTAA 108 (172)
T ss_pred HHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCC-CcEEeC-CCCeEEEEehhhccHH
Confidence 356777889999999988643111 0111122222 33344321 1000000000 000001 1345889996221122
Q ss_pred HH-HHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 79 AT-ALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 79 a~-~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.. .+.+. .....|+|++|.++.++|+..|.
T Consensus 109 ~r~~~d~~--g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 109 NVALASLL--GEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred HHHHhccC--CCEEEEEEECCHHHHHHHHHhcC
Confidence 21 22221 12389999999999999998883
No 126
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=77.99 E-value=6 Score=31.66 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.0
Q ss_pred hhhhhHhCCceeCHHHHHHHH
Q 028770 3 SSSYMQYGLVHIAAGDLLRAE 23 (204)
Q Consensus 3 ~~~a~~~gl~~is~~dllr~~ 23 (204)
..+|++||+.+++.|++.|..
T Consensus 20 ~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 20 KAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred HHHHHHhCCceeeCchHHHHH
Confidence 457889999999999998865
No 127
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=77.34 E-value=32 Score=26.81 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=50.6
Q ss_pred hHh-CCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEecc----------CCC
Q 028770 7 MQY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGY----------PRS 75 (204)
Q Consensus 7 ~~~-gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGf----------Prt 75 (204)
+.. +...++.|+++=+....+.- -..++-|. .+|.+....+...+.........-.|+|+- |--
T Consensus 26 ~~l~~~~ivNyG~~Mle~A~k~gl--ve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgL 100 (189)
T COG2019 26 KELVKHKIVNYGDLMLEIAKKKGL--VEHRDEMR---KLPLENQRELQAEAAKRIAEMALEIIVDTHATIKTPAGYLPGL 100 (189)
T ss_pred HHHhhceeeeHhHHHHHHHHHhCC--cccHHHHh---cCCHHHHHHHHHHHHHHHHHhhhceEEeccceecCCCccCCCC
Confidence 444 77778889887664443221 12233333 356666655554333221111111666652 222
Q ss_pred HHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhC
Q 028770 76 LSQATALKKYGFQPDLFILLEVPEDTLVERVVG 108 (204)
Q Consensus 76 ~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~ 108 (204)
..+. |+ .+.||.++.|+.+++.++.|..+
T Consensus 101 P~~V--l~--~l~pd~ivllEaDp~~Il~RR~~ 129 (189)
T COG2019 101 PSWV--LE--ELNPDVIVLLEADPEEILERRLR 129 (189)
T ss_pred cHHH--HH--hcCCCEEEEEeCCHHHHHHHHhc
Confidence 2222 22 25899999999999988887643
No 128
>COG4639 Predicted kinase [General function prediction only]
Probab=75.56 E-value=4.8 Score=30.83 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEeccC---CCHHHHHHHHH-cCCCCCEEEEecCCHHHHHHHHh
Q 028770 46 DEIVVTMVKERLSQPDSQENGWLLDGYP---RSLSQATALKK-YGFQPDLFILLEVPEDTLVERVV 107 (204)
Q Consensus 46 de~i~~ll~~~l~~~~~~~~G~ILDGfP---rt~~Qa~~l~~-~~~~p~~vi~L~~~~~~~~~R~~ 107 (204)
++.+.+++.+.+++.....+-.|+|-.= +++.+...|.+ +|.. ..+|+|+.|.+.|.+|-.
T Consensus 51 ~~~~~~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~-~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 51 DELVWDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYK-IYAIVFDTPLELCLARNK 115 (168)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCe-EEEEEEeCCHHHHHHHhh
Confidence 4455555544444433234568999874 55666666654 4444 467999999999999964
No 129
>PRK05541 adenylylsulfate kinase; Provisional
Probab=73.61 E-value=6 Score=30.05 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=27.1
Q ss_pred cEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHh
Q 028770 66 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 107 (204)
Q Consensus 66 G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~ 107 (204)
-+|+||.- .......+......+..+|+|++|.+++.+|..
T Consensus 80 ~VI~~~~~-~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~ 120 (176)
T PRK05541 80 IVIVTTIS-MFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ 120 (176)
T ss_pred EEEEEeCC-cHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch
Confidence 46778752 222333333333456789999999999999975
No 130
>PRK03846 adenylylsulfate kinase; Provisional
Probab=72.16 E-value=9.5 Score=29.74 Aligned_cols=39 Identities=8% Similarity=0.082 Sum_probs=25.3
Q ss_pred EEEeccCCCH-HHHHHHHHcC-CCCCEEEEecCCHHHHHHH
Q 028770 67 WLLDGYPRSL-SQATALKKYG-FQPDLFILLEVPEDTLVER 105 (204)
Q Consensus 67 ~ILDGfPrt~-~Qa~~l~~~~-~~p~~vi~L~~~~~~~~~R 105 (204)
.|+..|.... .+-+.+.+.. ..+-.+|+|++|.+++.+|
T Consensus 98 ~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 98 VVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred EEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 5677887543 3444444331 1233489999999999998
No 131
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=70.42 E-value=46 Score=27.02 Aligned_cols=87 Identities=13% Similarity=0.086 Sum_probs=53.5
Q ss_pred HHHHHHHHHc---CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHH
Q 028770 76 LSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKT 152 (204)
Q Consensus 76 ~~Qa~~l~~~---~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~ 152 (204)
+.+...|+++ ....=+=++|.+|.++-.+|+..|.-+|.+.= +.....-.-.++...
T Consensus 120 ~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~W--------------------k~~~~D~~~~~~yd~ 179 (230)
T TIGR03707 120 LRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQW--------------------KLSPMDLASLDRWDD 179 (230)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc--------------------cCCHHHHHHHHhHHH
Confidence 3455556653 12233568999999999999999887764421 112122233445667
Q ss_pred HHHHHHHHHHHhh---cceeEEeCCCCHHHHHH
Q 028770 153 HHHNVEAVLSLYE---DVTVEVNGSVNKEDVFA 182 (204)
Q Consensus 153 y~~~~~~v~~~y~---~~~~~Ida~~~~~~V~~ 182 (204)
|....+.+++.=. .-++.|+|+..-..-..
T Consensus 180 y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~ 212 (230)
T TIGR03707 180 YSRAKDEMFARTDTPEAPWTVVRSDDKKRARLN 212 (230)
T ss_pred HHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHH
Confidence 7776666665432 25999999877554444
No 132
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=69.70 E-value=20 Score=26.88 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=40.8
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcC--ChhHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVVTMVKE 55 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~--t~~g~~i~~~l~~G~~vpde~i~~ll~~ 55 (204)
.+++|+++|+...-+=-+|......+ +..-..+.+++.+|-.+|.+++.+++..
T Consensus 98 aR~~A~~lgL~V~GtlGvL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 98 ARNVAKSLGLKVTGTLGVLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHHHHHcCCeeeehhHHHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 46789999999997666665544433 3334678888999999999999998865
No 133
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=69.27 E-value=16 Score=28.16 Aligned_cols=140 Identities=18% Similarity=0.224 Sum_probs=74.0
Q ss_pred hhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHH-------HHHHhcCCCCCCCcEEEeccCCCH
Q 028770 4 SSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTM-------VKERLSQPDSQENGWLLDGYPRSL 76 (204)
Q Consensus 4 ~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~l-------l~~~l~~~~~~~~G~ILDGfPrt~ 76 (204)
.+++++|+..+.-+|+=-. .=.+.+.+|-++.|+=-... +..++. ..+|+||-.--- .
T Consensus 31 ~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~----~~q~vVlACSaL-K 95 (191)
T KOG3354|consen 31 ALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELRKALA----SGQGVVLACSAL-K 95 (191)
T ss_pred HHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHHHHhh----cCCeEEEEhHHH-H
Confidence 4556666666655544111 11344666777766532222 222333 357888844211 1
Q ss_pred HHHHHHHH-------cCCCCC---EEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHH
Q 028770 77 SQATALKK-------YGFQPD---LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKV 146 (204)
Q Consensus 77 ~Qa~~l~~-------~~~~p~---~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i 146 (204)
.+-..+-. .+..|. .+|+|..+.+++.+|+..|.-| |.|+.. +
T Consensus 96 k~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gH----------FMp~~l-----------------l 148 (191)
T KOG3354|consen 96 KKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGH----------FMPADL-----------------L 148 (191)
T ss_pred HHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccc----------cCCHHH-----------------H
Confidence 12222211 123343 6899999999999999999643 444321 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcceeEEeCC-CCHHHHHHHHHHHHHH
Q 028770 147 KLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTN 190 (204)
Q Consensus 147 ~~Rl~~y~~~~~~v~~~y~~~~~~Ida~-~~~~~V~~~i~~~l~~ 190 (204)
+- +|.....| +--+++++.||.. .+++++...|.+.+..
T Consensus 149 eS---Qf~~LE~p--~~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 149 ES---QFATLEAP--DADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred HH---HHHhccCC--CCCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 00 11110000 0001368899987 9999988888776543
No 134
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=69.16 E-value=54 Score=27.23 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=53.5
Q ss_pred HHHHHHHHHc---CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHH
Q 028770 76 LSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKT 152 (204)
Q Consensus 76 ~~Qa~~l~~~---~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~ 152 (204)
+.++..|+++ ....=+=++|.++.++-.+|+..|.-+|.+. -+.....-...++...
T Consensus 145 ~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~--------------------Wk~s~~D~~~~~~yd~ 204 (264)
T TIGR03709 145 YEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKN--------------------WKFSPADLKERAYWDD 204 (264)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCccc--------------------ccCCHHHHHHHHhHHH
Confidence 3455566653 1223356889999999999999987776432 1122122234556677
Q ss_pred HHHHHHHHHHHhh---cceeEEeCCCCHHHHH
Q 028770 153 HHHNVEAVLSLYE---DVTVEVNGSVNKEDVF 181 (204)
Q Consensus 153 y~~~~~~v~~~y~---~~~~~Ida~~~~~~V~ 181 (204)
|....+.++..=. .-++.|+|+.....-.
T Consensus 205 y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l 236 (264)
T TIGR03709 205 YMEAYEDALTATSTKHAPWYVVPADDKWFRRL 236 (264)
T ss_pred HHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHH
Confidence 7777766665422 3589999987755433
No 135
>PHA03132 thymidine kinase; Provisional
Probab=68.04 E-value=16 Score=33.89 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.4
Q ss_pred CCCEEEEecCCHHHHHHHHhCCC
Q 028770 88 QPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.||++|+|+++.+++++|+..|.
T Consensus 401 ~PDLiIyLdv~pe~alkRIkkRg 423 (580)
T PHA03132 401 EGDVIVLLKLNSEENLRRVKKRG 423 (580)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcC
Confidence 59999999999999999998884
No 136
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=65.98 E-value=49 Score=30.57 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.1
Q ss_pred eeEEeCC-CCHHHHHHHHHHHHHH
Q 028770 168 TVEVNGS-VNKEDVFAQIDVALTN 190 (204)
Q Consensus 168 ~~~Ida~-~~~~~V~~~i~~~l~~ 190 (204)
-++||.+ .+++++.+.|...|..
T Consensus 539 dl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 539 ELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHH
Confidence 3578876 5899999998887754
No 137
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=65.44 E-value=7.3 Score=30.50 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=29.3
Q ss_pred cEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 66 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 66 G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
-+|+||+ --. +-..+.. ..|.+|++++|.+++++|+..|..
T Consensus 113 iViVEG~-~l~-~~~~l~~---l~D~~Ifvd~~~d~~~~Rr~~R~~ 153 (187)
T cd02024 113 ILIVDGF-LLY-NYKPLVD---LFDIRYFLRVPYETCKRRREARTG 153 (187)
T ss_pred EEEEech-Hhc-CCHHHHh---hcCceeEecCCHHHHHHHHHHcCC
Confidence 4688998 111 1122332 478999999999999999999854
No 138
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=64.95 E-value=4.7 Score=32.28 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=29.7
Q ss_pred cEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 66 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 66 G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
-+|+||+..-... ..+.......|.+|++++|.++.++|+..|.
T Consensus 139 ivIvEG~~~l~~~-~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~ 182 (229)
T PRK09270 139 LVIVEGNYLLLDE-EPWRRLAGLFDFTIFLDAPAEVLRERLVARK 182 (229)
T ss_pred EEEEcCcceeecc-ccHHHHHhhCCEEEEEECCHHHHHHHHHHHH
Confidence 4677998554321 1222222235899999999999999998873
No 139
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=64.78 E-value=7.1 Score=27.39 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=35.2
Q ss_pred cCCCCCHHHHHHHHHHHhcCC--CCCCCcEEEeccCCCHHHHHHHHHcCCCCCEE-EEecCCHHHHHHHHhCCCc
Q 028770 40 KGQLVPDEIVVTMVKERLSQP--DSQENGWLLDGYPRSLSQATALKKYGFQPDLF-ILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 40 ~G~~vpde~i~~ll~~~l~~~--~~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~v-i~L~~~~~~~~~R~~~r~~ 111 (204)
.......+....++....... ......+|+||......... ..... |+|+||++++.+|+..|..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~-------~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 47 ENKRLDMEFQDELLDSIIQAIRRMNKGRNIIIDGILSNLELER-------LFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEEESSEEECETT-------EEEESSEEEE--HHHHHHHHHCTTT
T ss_pred hhhhhhhhhHHHHHHHHHHhhcccccCCcEEEecccchhcccc-------cceeeEEEEECCHHHHHHHHHhCCC
Confidence 344455555444443222211 11245689999865433111 11222 9999999999999999854
No 140
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=62.43 E-value=8.8 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=23.9
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEEEEecC
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEV 97 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~ 97 (204)
..||+||+.....+.. ......+|..|+|++
T Consensus 33 ~~~I~eg~~~~~~~~~--~~~~~~~d~~Iyld~ 63 (69)
T cd02019 33 EIVILEGLYASYKSRD--ARIRDLADLKIYLDA 63 (69)
T ss_pred EEEEecchhhhhhhHH--hhccccccEEEEEEe
Confidence 4799999988877765 334557899999987
No 141
>KOG4479 consensus Transcription factor e(y)2 [Transcription]
Probab=62.38 E-value=15 Score=24.74 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=29.4
Q ss_pred CchhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHH
Q 028770 1 MKSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVK 54 (204)
Q Consensus 1 ~~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~ 54 (204)
||.++-.+-|+.+|++++|+-+. ||-|. -+|||.+--+|+.
T Consensus 40 mcrniimEkG~~n~tvdqL~Aei----tPkaR---------aLVPd~VKkEll~ 80 (92)
T KOG4479|consen 40 MCRNIIMEKGVDNITVDQLAAEI----TPKAR---------ALVPDVVKKELLL 80 (92)
T ss_pred HHHHHHHHhccccccHHHHHHHh----Cchhh---------hhchHHHHHHHHH
Confidence 78888889999999999987654 33232 3588877666653
No 142
>PHA03136 thymidine kinase; Provisional
Probab=55.80 E-value=12 Score=32.70 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 87 FQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 87 ~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
..||.+|+|+.+.+++++|+..|..
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARGR 214 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 3589999999999999999999864
No 143
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=54.65 E-value=50 Score=27.39 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=32.0
Q ss_pred CcEEEec--cCCCHH-HHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 65 NGWLLDG--YPRSLS-QATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 65 ~G~ILDG--fPrt~~-Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.-+|+|+ |=++++ |.-.+.+....+-.+|+++||.+.++.|-..|.
T Consensus 72 ~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 72 TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 4678888 445554 777776665667899999999999999988875
No 144
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=51.88 E-value=62 Score=29.32 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=60.7
Q ss_pred eeCHHHHHHHH---HHc----------CChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHH
Q 028770 13 HIAAGDLLRAE---IAA----------GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA 79 (204)
Q Consensus 13 ~is~~dllr~~---i~~----------~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa 79 (204)
.+|||+.+|.- |.. +..+-..|..++.+.-.+-+.+|.+....+|++.+ -++.-|++... +.
T Consensus 300 s~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgd----viltyg~s~vV-~~ 374 (556)
T KOG1467|consen 300 SISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGD----VLLTYGSSSVV-NM 374 (556)
T ss_pred cchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----EEEEecchHHH-HH
Confidence 47889887753 331 12234455556666555677788888888887643 36668885544 44
Q ss_pred HHHHHcCCCCC-EEEEecCCH----HHHHHHHhCCCcC
Q 028770 80 TALKKYGFQPD-LFILLEVPE----DTLVERVVGRRLD 112 (204)
Q Consensus 80 ~~l~~~~~~p~-~vi~L~~~~----~~~~~R~~~r~~~ 112 (204)
-+++.+...++ .|+++|..+ ..+++|+..++++
T Consensus 375 ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~Gin 412 (556)
T KOG1467|consen 375 ILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGIN 412 (556)
T ss_pred HHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCC
Confidence 44554434444 688888765 4788898888763
No 145
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=51.56 E-value=49 Score=26.67 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCcEEEecc-CCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 64 ENGWLLDGY-PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 64 ~~G~ILDGf-Prt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.+-+||+|+ +-+- +.+.+ .-|+-|++++|.++++.|...|.
T Consensus 108 ~~VVIvEGi~~l~d---~~lr~---~~d~kIfvdtd~D~RliRri~RD 149 (218)
T COG0572 108 NDVVIVEGILLLYD---ERLRD---LMDLKIFVDTDADVRLIRRIKRD 149 (218)
T ss_pred CcEEEEeccccccc---HHHHh---hcCEEEEEeCCccHHHHHHHHHH
Confidence 345788998 2222 22332 25789999999999988887774
No 146
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=49.59 E-value=81 Score=24.23 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=26.4
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.-+|+||.- ..... .+.. ..|.+|++++|.++.+.|...|.
T Consensus 100 ~~vI~eg~~-~~~~~-~~~~---~~d~~i~v~~~~~~~~~R~~~Rd 140 (198)
T cd02023 100 DVIILEGIL-ALYDK-ELRD---LMDLKIFVDTDADVRLIRRIERD 140 (198)
T ss_pred CEEEEechh-hccch-hHHh---hcCeEEEEECChhHHHHHHHHHH
Confidence 456778862 11111 2211 25899999999999888887663
No 147
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=47.64 E-value=38 Score=27.52 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=44.6
Q ss_pred CCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcceeEEeCCCCHHHHHHHHHHHHHHHHhh
Q 028770 123 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQ 194 (204)
Q Consensus 123 ~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~Ida~~~~~~V~~~i~~~l~~~~~~ 194 (204)
+.||..+...+||-.|--++.+.+.+|+..=........+-+.-.+..+++ .+.++.+..+...+..-..+
T Consensus 155 ~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns-~~lee~~kel~~~~~~~~~~ 225 (231)
T KOG0707|consen 155 IKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENSGSFDLVIVNS-DRLEEAYKELEIFISSDDKE 225 (231)
T ss_pred ecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCCccccceecCC-CchhhhhhhhhhhhhHHHHh
Confidence 346666666677777766778888888884434444333322223444444 88899988888777654443
No 148
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=47.48 E-value=23 Score=28.32 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=44.2
Q ss_pred CCCEEEEecCCHHHHHHHHhCCCcC--CCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHH-HHHHHHHHHHHh
Q 028770 88 QPDLFILLEVPEDTLVERVVGRRLD--PVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKT-HHHNVEAVLSLY 164 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r~~~--~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~-y~~~~~~v~~~y 164 (204)
..|..|++++|.+++..|+..|... ...|+.. ...+.+-..-+++....+... |.....+...-|
T Consensus 128 ~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (220)
T cd02025 128 FFDFSIYVDADEDDIEKWYIKRFLKLRETAFSDP------------DSYFHRYAKMSEEEAIAFAREVWKNINLKNLREN 195 (220)
T ss_pred hCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhCc------------hhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhh
Confidence 3689999999999987777766321 0000000 000011011234555566654 777777755333
Q ss_pred -------hcceeEEeCCCCHHHH
Q 028770 165 -------EDVTVEVNGSVNKEDV 180 (204)
Q Consensus 165 -------~~~~~~Ida~~~~~~V 180 (204)
.+.++..+++.++..+
T Consensus 196 i~p~~~~AD~ii~~~~~~~~~~~ 218 (220)
T cd02025 196 ILPTRNRADLILEKGADHSIEEV 218 (220)
T ss_pred ccCCccceEEEEEeCCCCcEEEE
Confidence 2356777777776554
No 149
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.18 E-value=31 Score=19.54 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.3
Q ss_pred HHHHHHHcCCCCCHHHHHHH
Q 028770 33 RAKEHMEKGQLVPDEIVVTM 52 (204)
Q Consensus 33 ~i~~~l~~G~~vpde~i~~l 52 (204)
.+-++|.+|..||++++..+
T Consensus 16 ~ayK~l~~~~pVP~~l~~~I 35 (37)
T PF08880_consen 16 LAYKYLARNQPVPPQLQQAI 35 (37)
T ss_pred HHHHHHHcCCCCCHHHHHhh
Confidence 45678999999999987654
No 150
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=44.60 E-value=1.4e+02 Score=22.78 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=44.1
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChh--------HHHH--HHH---HHcC-------CCCCHHHHHHHHHHHhcCCC
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSEN--------GKRA--KEH---MEKG-------QLVPDEIVVTMVKERLSQPD 61 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~--------g~~i--~~~---l~~G-------~~vpde~i~~ll~~~l~~~~ 61 (204)
+..||+++|+.+++- ++|.+.... ..+ .+.. ... +..+ ....++.+.....+-+.+.-
T Consensus 16 a~~LA~~Lg~~~~d~-~ii~~~a~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~la 93 (179)
T PF13189_consen 16 AERLAEKLGYPYYDR-EIIEEAAKE-SGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDKIFRAQSEIIRELA 93 (179)
T ss_dssp HHHHHHHCT--EE-H-HHHHHCT-------------SS-HHH--HH---HHS--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccCCH-HHHHHHHHH-ccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHHHHHHHHHHHHHHh
Confidence 467999999999997 888765443 111 0110 111 1111 11223333333332222221
Q ss_pred CCCCcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCC
Q 028770 62 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 62 ~~~~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r 109 (204)
...+.|+.|. .. ..+-+ +....+-|+|..|.+.-.+|+..+
T Consensus 94 -~~~~~Vi~GR--~a---~~il~-~~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 94 -AKGNCVIVGR--CA---NYILR-DIPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp -H---EEEEST--TH---HHHTT-T-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred -ccCCEEEEec--CH---hhhhC-CCCCeEEEEEECCHHHHHHHHHHH
Confidence 1335777775 11 11111 223457899999999999999876
No 151
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=43.89 E-value=1.4e+02 Score=22.43 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=50.4
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHH-H
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA-T 80 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa-~ 80 (204)
+.++++++|+..+-+..++.+. +...|.+.-+++++|. .+.+-+.-.--+ --+-+|.||-+.|+.+- .
T Consensus 28 ~~~Ls~rL~I~Pv~iESMl~qM---Gk~~~~~Firyl~~~~---e~hl~nAA~vll-----IyQ~~Ivd~sd~Nl~~W~~ 96 (148)
T PF06711_consen 28 IRRLSERLNIKPVYIESMLDQM---GKRAGQEFIRYLSRGN---EEHLQNAAQVLL-----IYQTFIVDGSDENLQRWRR 96 (148)
T ss_pred HHHHHHHhCCCceeHHHHHHHH---hHhHHHHHHHHHcCCC---HHHHHhhhhhhh-----eeeeeeecCCHHHHHHHHH
Confidence 4578999999999999888864 3345677777787764 222222111000 13568899999998755 4
Q ss_pred HHHHcCCCCC
Q 028770 81 ALKKYGFQPD 90 (204)
Q Consensus 81 ~l~~~~~~p~ 90 (204)
.|.+.+..|.
T Consensus 97 ~L~ka~l~~~ 106 (148)
T PF06711_consen 97 ILQKAGLSPP 106 (148)
T ss_pred HHHHcCCCCC
Confidence 4566666664
No 152
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=43.34 E-value=2.1e+02 Score=26.03 Aligned_cols=83 Identities=19% Similarity=0.102 Sum_probs=52.6
Q ss_pred EEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhh---cc
Q 028770 91 LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE---DV 167 (204)
Q Consensus 91 ~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~---~~ 167 (204)
+=++|.++.++-.+|+..|.-+|.+.= ......-.-.++...|....+.++..=. .-
T Consensus 147 lKffLhIsk~EQ~kRl~~r~~~P~k~W--------------------K~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~AP 206 (493)
T TIGR03708 147 LKFWLHLSKKQQKERLKKLEKDPETRW--------------------RVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAP 206 (493)
T ss_pred EEEEEECCHHHHHHHHHHHhcCCcccc--------------------CCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCC
Confidence 568899999999999999987774321 1111122334456677766666655422 25
Q ss_pred eeEEeCCCCHH---HHHHHHHHHHHHHHh
Q 028770 168 TVEVNGSVNKE---DVFAQIDVALTNLLE 193 (204)
Q Consensus 168 ~~~Ida~~~~~---~V~~~i~~~l~~~~~ 193 (204)
++.|+|+..-- .|.+.|...|...+.
T Consensus 207 W~vI~addK~~arl~v~~~il~~L~~~l~ 235 (493)
T TIGR03708 207 WTVVEGEDDRYRSLTVGRTLLAAIRARLA 235 (493)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987543 455555666666653
No 153
>PRK07667 uridine kinase; Provisional
Probab=43.23 E-value=53 Score=25.40 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=26.9
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCC
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r 109 (204)
.-+|+||-- +.. ..+.. ..|.+|++++|+++.++|+..|
T Consensus 121 ~vvIvEG~~--l~~-~~~~~---~~d~~v~V~~~~~~~~~R~~~r 159 (193)
T PRK07667 121 GVIVIEGVF--LQR-KEWRD---FFHYMVYLDCPRETRFLRESEE 159 (193)
T ss_pred CEEEEEehh--hhh-hhHHh---hceEEEEEECCHHHHHHHHhcc
Confidence 346778863 111 12222 3589999999999999999765
No 154
>PRK06696 uridine kinase; Validated
Probab=41.42 E-value=42 Score=26.60 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=20.0
Q ss_pred CCEEEEecCCHHHHHHHHhCCC
Q 028770 89 PDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 89 p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
.|.+|++++|.++..+|+..|.
T Consensus 147 ~d~~i~v~~~~e~~~~R~~~Rd 168 (223)
T PRK06696 147 WDYKIFLDTDFEVSRRRGAKRD 168 (223)
T ss_pred CCEEEEEECCHHHHHHHHHHhh
Confidence 5899999999999999998874
No 155
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=40.02 E-value=1.5e+02 Score=24.84 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=32.9
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHHHHH
Q 028770 39 EKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK 84 (204)
Q Consensus 39 ~~G~~vpde~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~l~~ 84 (204)
..|...|+|.+.+++..--.......-.-|+.||=.|.+|.+.+..
T Consensus 48 ~~g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~ 93 (281)
T COG2240 48 WTGIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAG 93 (281)
T ss_pred CCCcCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHH
Confidence 3477889999999987533312112334699999999999988765
No 156
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=39.20 E-value=1e+02 Score=21.34 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=41.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhh----------cceeEEeCCC-CHHHHHHHHHHHHHHHHh
Q 028770 140 DDTEEKVKLRLKTHHHNVEAVLSLYE----------DVTVEVNGSV-NKEDVFAQIDVALTNLLE 193 (204)
Q Consensus 140 dd~~e~i~~Rl~~y~~~~~~v~~~y~----------~~~~~Ida~~-~~~~V~~~i~~~l~~~~~ 193 (204)
.+.+..+...+.+|-+....|..-|- ..++.||... +.++++..+..+....+.
T Consensus 14 ~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~ 78 (108)
T PF14581_consen 14 EEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLP 78 (108)
T ss_pred ccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCC
Confidence 45677888889989888888877662 1478899888 999999999887766543
No 157
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=38.10 E-value=91 Score=25.21 Aligned_cols=84 Identities=10% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHHHHHc---CCCCCEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHH
Q 028770 76 LSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKT 152 (204)
Q Consensus 76 ~~Qa~~l~~~---~~~p~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~ 152 (204)
++++..|+++ ....=+=++|.++.++-.+|+..|.-+|.+.- +.....-.-.+.+..
T Consensus 120 ~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~w--------------------kv~~~D~~~~~~yd~ 179 (228)
T PF03976_consen 120 LEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRW--------------------KVSPEDWEQRKHYDR 179 (228)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGG--------------------G--HHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccc--------------------cCCHHHHHHHhhHHH
Confidence 4455556553 12223567899999999999999877664421 111111122334566
Q ss_pred HHHHHHHHHHHhh---cceeEEeCCCCHHH
Q 028770 153 HHHNVEAVLSLYE---DVTVEVNGSVNKED 179 (204)
Q Consensus 153 y~~~~~~v~~~y~---~~~~~Ida~~~~~~ 179 (204)
|....+.+++.=. .-++.|+|+...-.
T Consensus 180 y~~a~~~~l~~T~t~~APW~iI~a~dk~~a 209 (228)
T PF03976_consen 180 YQKAYEEMLERTDTPYAPWHIIPADDKRYA 209 (228)
T ss_dssp HHHHHHHHHHHH-BSSS-EEEEE-SSHHHH
T ss_pred HHHHHHHHHhccCCCCCCeEEEeCCCHHHH
Confidence 7666666655422 36999999876543
No 158
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=36.50 E-value=3.3e+02 Score=24.86 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=45.1
Q ss_pred CEEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHhh---c
Q 028770 90 DLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE---D 166 (204)
Q Consensus 90 ~~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~Rl~~y~~~~~~v~~~y~---~ 166 (204)
=+=++|+++.++=.+|+..|.-+|.+.- +..+..-.-.++...|....+.++..=. .
T Consensus 405 ivKf~LhIsk~EQ~~R~~~r~~~p~k~W--------------------K~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~A 464 (493)
T TIGR03708 405 VVKFWLHIDKEEQLRRFEERENTPFKRY--------------------KITDEDWRNREKWDAYEDAVNDMIDRTSTIIA 464 (493)
T ss_pred EEEEEEEcCHHHHHHHHHHHhcCCccCC--------------------cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCC
Confidence 3568899999999999999987764321 1121222334456677776666655432 2
Q ss_pred ceeEEeCCCCHHH
Q 028770 167 VTVEVNGSVNKED 179 (204)
Q Consensus 167 ~~~~Ida~~~~~~ 179 (204)
-++.|+|+...-.
T Consensus 465 PW~vI~a~dK~~a 477 (493)
T TIGR03708 465 PWTLVEANDKRYA 477 (493)
T ss_pred CeEEEeCCChHHH
Confidence 5899999876443
No 159
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.95 E-value=72 Score=28.48 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=39.7
Q ss_pred chhhhhHhCC-----ceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHH--HHHHHHHhcCCCCCCCcEEEe--cc
Q 028770 2 KSSSYMQYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV--VTMVKERLSQPDSQENGWLLD--GY 72 (204)
Q Consensus 2 ~~~~a~~~gl-----~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i--~~ll~~~l~~~~~~~~G~ILD--Gf 72 (204)
+.++|..+.+ +++...|..|.... .+++.+.+... +|.... ...+...+.... ...+|+| |+
T Consensus 240 aaKLA~~~~~~~G~~V~Lit~Dt~R~aA~------eQLk~yAe~lg-vp~~~~~~~~~l~~~l~~~~--~D~VLIDTaGr 310 (432)
T PRK12724 240 IAKLAAKYFLHMGKSVSLYTTDNYRIAAI------EQLKRYADTMG-MPFYPVKDIKKFKETLARDG--SELILIDTAGY 310 (432)
T ss_pred HHHHHHHHHHhcCCeEEEecccchhhhHH------HHHHHHHHhcC-CCeeehHHHHHHHHHHHhCC--CCEEEEeCCCC
Confidence 3455554421 55666677665322 24455544433 222111 223344454322 4568999 98
Q ss_pred C-CCHHHHHHHHH
Q 028770 73 P-RSLSQATALKK 84 (204)
Q Consensus 73 P-rt~~Qa~~l~~ 84 (204)
+ ++..|++.|.+
T Consensus 311 ~~rd~~~l~eL~~ 323 (432)
T PRK12724 311 SHRNLEQLERMQS 323 (432)
T ss_pred CccCHHHHHHHHH
Confidence 4 88999998876
No 160
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=35.60 E-value=58 Score=21.94 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=23.3
Q ss_pred CcE-EEeccCCCHH----HHHHHHHcCCCCCEEEEec
Q 028770 65 NGW-LLDGYPRSLS----QATALKKYGFQPDLFILLE 96 (204)
Q Consensus 65 ~G~-ILDGfPrt~~----Qa~~l~~~~~~p~~vi~L~ 96 (204)
.-| ++-+|||-.- .-..|+..|..|..+++++
T Consensus 43 ~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 43 ERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred CCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 345 8899999432 1147888999999888874
No 161
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=35.35 E-value=88 Score=28.95 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcC---CCCCCCc--EEEeccCCCH--HHHHHHHHc-CC-CCCEEEEecCC
Q 028770 31 GKRAKEHMEKGQLVPDEIVVTMVKERLSQ---PDSQENG--WLLDGYPRSL--SQATALKKY-GF-QPDLFILLEVP 98 (204)
Q Consensus 31 g~~i~~~l~~G~~vpde~i~~ll~~~l~~---~~~~~~G--~ILDGfPrt~--~Qa~~l~~~-~~-~p~~vi~L~~~ 98 (204)
|..++++|.+|..+|+.++-.=+.+.|.+ +. ..+| ++|-|+|-+= .=+..|.+. +. ..-.+++|+.+
T Consensus 355 gt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r-~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D 430 (568)
T PRK05537 355 GTELRRRLREGLEIPEWFSFPEVVAELRRTYPPR-HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD 430 (568)
T ss_pred HHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccc-cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc
Confidence 78999999999999997654333322222 22 2455 4778999862 234444432 11 11236666655
No 162
>PTZ00301 uridine kinase; Provisional
Probab=35.34 E-value=1.3e+02 Score=23.76 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=27.8
Q ss_pred cEEEeccCCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCc
Q 028770 66 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 111 (204)
Q Consensus 66 G~ILDGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~ 111 (204)
-+|++|+=- + +-..+.. ..|..|++++|.++++.|...|.+
T Consensus 109 ViIvEGi~~-l-~~~~l~~---l~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 109 VLIVEGILL-F-TNAELRN---EMDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred EEEEechhh-h-CCHHHHH---hCCEEEEEeCChhHHHHHHHhhhH
Confidence 356699721 1 1122333 258899999999999999988853
No 163
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=34.73 E-value=55 Score=22.05 Aligned_cols=32 Identities=13% Similarity=0.428 Sum_probs=23.2
Q ss_pred CcE-EEeccCCCHHH---------HHHHHHcCCCCCEEEEec
Q 028770 65 NGW-LLDGYPRSLSQ---------ATALKKYGFQPDLFILLE 96 (204)
Q Consensus 65 ~G~-ILDGfPrt~~Q---------a~~l~~~~~~p~~vi~L~ 96 (204)
..| ++.+|||-.-. ...|+..|+.|..++++.
T Consensus 42 ~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 42 EKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 345 67899996543 347888899998777764
No 164
>PF14066 DUF4256: Protein of unknown function (DUF4256)
Probab=34.58 E-value=26 Score=26.74 Aligned_cols=52 Identities=19% Similarity=0.471 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCCCCCcEE-------EeccCCCHHHHHHHHHcCCCCCE---------EEEecCCHHH
Q 028770 50 VTMVKERLSQPDSQENGWL-------LDGYPRSLSQATALKKYGFQPDL---------FILLEVPEDT 101 (204)
Q Consensus 50 ~~ll~~~l~~~~~~~~G~I-------LDGfPrt~~Qa~~l~~~~~~p~~---------vi~L~~~~~~ 101 (204)
.++|+.|..++..+..|+- |..-|.-+--...|+..|..||+ .|+.||+.+.
T Consensus 2 l~~Lk~RFekn~~RH~~l~W~~V~~kL~~~p~kLwsL~eME~TgGEPDVv~~d~~t~~yiF~DCs~ES 69 (173)
T PF14066_consen 2 LKILKARFEKNMNRHPGLEWAKVQAKLEANPEKLWSLNEMERTGGEPDVVGYDKKTGEYIFYDCSAES 69 (173)
T ss_pred hHHHHHHHHhchhccCCCcHHHHHHHHHcChHHHHHHHHHHHhCCCCCeeeecCCCCeEEEEECCCCC
Confidence 3556677766655455531 33335555555667778888875 5677777663
No 165
>PF14240 YHYH: YHYH protein
Probab=34.56 E-value=16 Score=27.96 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=9.5
Q ss_pred CCcEEEeccCC
Q 028770 64 ENGWLLDGYPR 74 (204)
Q Consensus 64 ~~G~ILDGfPr 74 (204)
--||.+||||-
T Consensus 87 liG~A~DGfPI 97 (166)
T PF14240_consen 87 LIGYAADGFPI 97 (166)
T ss_pred eEEEEecCCee
Confidence 46999999985
No 166
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=33.21 E-value=94 Score=20.39 Aligned_cols=44 Identities=16% Similarity=0.444 Sum_probs=27.8
Q ss_pred HHHHhcCCCCCCCcE-EEeccCCCH-HH---HHHHHHcCCCCCEEEEec
Q 028770 53 VKERLSQPDSQENGW-LLDGYPRSL-SQ---ATALKKYGFQPDLFILLE 96 (204)
Q Consensus 53 l~~~l~~~~~~~~G~-ILDGfPrt~-~Q---a~~l~~~~~~p~~vi~L~ 96 (204)
|.+.+.........| ++.+|||-. .+ -..|.+.|+.|..++++.
T Consensus 30 v~~fV~~~~~~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 30 VRLFVELNTGNGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 344444332222345 779999962 22 356888899999988874
No 167
>TIGR02786 addB_alphas double-strand break repair protein AddB, alphaproteobacterial type. AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage. More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of the alphaproteobacteial type.
Probab=32.24 E-value=1.6e+02 Score=29.34 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=43.2
Q ss_pred HHHHcCCCCCHHH----HHHHHHHHhcCCCCCCCcEEEeccCC-CHHHHHHHHHcCCCCC-EEE----EecCCHHH
Q 028770 36 EHMEKGQLVPDEI----VVTMVKERLSQPDSQENGWLLDGYPR-SLSQATALKKYGFQPD-LFI----LLEVPEDT 101 (204)
Q Consensus 36 ~~l~~G~~vpde~----i~~ll~~~l~~~~~~~~G~ILDGfPr-t~~Qa~~l~~~~~~p~-~vi----~L~~~~~~ 101 (204)
+.|++.+.+..+- ++..+.+++.+... ..-+++|||=- |..|+..++...-.|. ++| -|++++..
T Consensus 184 ~~L~~~~~~d~~~r~~~~l~~la~~l~~~~~-~~~viiaGftg~tp~~~~ll~al~~~~~g~vVLPgldl~ld~~~ 258 (1021)
T TIGR02786 184 KRLAELGRSNPAARRNRLLRALAARWATNPP-EGPVIAAGSTGSIPATADLLAVVARLPQGAVVLPGLDLDMDEEA 258 (1021)
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCCEECCCCCCCCCHHH
Confidence 4454444666666 77777888886654 45589999944 4668888887544554 566 67777654
No 168
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=30.62 E-value=78 Score=24.43 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCcEEEeccCCCHHH-HHHHHH-cCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 64 ENGWLLDGYPRSLSQ-ATALKK-YGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 64 ~~G~ILDGfPrt~~Q-a~~l~~-~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
...+|+|+...+... .+.+.+ ....|-++|-+.||.+++.+|-..|.
T Consensus 83 G~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 83 GNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp T-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred CCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence 456899988676664 444523 33457789999999999999887774
No 169
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=30.37 E-value=59 Score=26.15 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=13.0
Q ss_pred HHHHhcCCCCCCCcEEE--eccCCC
Q 028770 53 VKERLSQPDSQENGWLL--DGYPRS 75 (204)
Q Consensus 53 l~~~l~~~~~~~~G~IL--DGfPrt 75 (204)
+...|.+....-.|=++ |||||+
T Consensus 40 ~~~vL~~~~~~Md~pLvd~eGfPRs 64 (231)
T KOG3129|consen 40 LVEVLENNGGTMDGPLVDAEGFPRS 64 (231)
T ss_pred HHHHHhcCCCcCCCcccCCCCCccc
Confidence 34445544333445455 799996
No 170
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=29.59 E-value=1.8e+02 Score=19.84 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=10.5
Q ss_pred CCEEEEecCCHHHHHHH
Q 028770 89 PDLFILLEVPEDTLVER 105 (204)
Q Consensus 89 p~~vi~L~~~~~~~~~R 105 (204)
|-.+|.|+.|+++-...
T Consensus 4 p~y~InLdlpP~eRw~~ 20 (95)
T PF15508_consen 4 PWYTINLDLPPEERWVQ 20 (95)
T ss_pred CEEEeeCCCCHHHHHHH
Confidence 55667777777655443
No 171
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=29.06 E-value=2e+02 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=20.6
Q ss_pred ceeEEe-CCCCHHHHHHHHHHHHHHH
Q 028770 167 VTVEVN-GSVNKEDVFAQIDVALTNL 191 (204)
Q Consensus 167 ~~~~Id-a~~~~~~V~~~i~~~l~~~ 191 (204)
.++.|| +..+.+++++++.++|.++
T Consensus 144 eivvv~~~e~~~eELveDlisIltsf 169 (193)
T COG2452 144 EIVVVNQEDKDSEELVEDLVSILTSF 169 (193)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 578888 5666699999999999864
No 172
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=27.33 E-value=56 Score=20.46 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCCCCCCcEEEeccCCCHH
Q 028770 50 VTMVKERLSQPDSQENGWLLDGYPRSLS 77 (204)
Q Consensus 50 ~~ll~~~l~~~~~~~~G~ILDGfPrt~~ 77 (204)
..-++..+... ..-||+.|||-+-+
T Consensus 18 l~~lr~~~k~~---~DI~I~NGF~~~~d 42 (57)
T PF14453_consen 18 LFELRKESKPD---ADIVILNGFPTKED 42 (57)
T ss_pred HHHHHHhhCCC---CCEEEEcCcccCCc
Confidence 33445554432 45799999997643
No 173
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=27.27 E-value=38 Score=20.15 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=17.2
Q ss_pred EeccCCCHHHHHHHHHcCCC
Q 028770 69 LDGYPRSLSQATALKKYGFQ 88 (204)
Q Consensus 69 LDGfPrt~~Qa~~l~~~~~~ 88 (204)
|-||.+-..|++.|.+.|+.
T Consensus 11 lTG~k~~~~Q~~~L~~~Gi~ 30 (47)
T PF13986_consen 11 LTGYKRPSKQIRWLRRNGIP 30 (47)
T ss_pred HHCCCCHHHHHHHHHHCCCe
Confidence 57898999999999998764
No 174
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=26.05 E-value=95 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 028770 143 EEKVKLRLKTHHHNVEAVLSLYED 166 (204)
Q Consensus 143 ~e~i~~Rl~~y~~~~~~v~~~y~~ 166 (204)
-+.+.+|++.|++++..|...|..
T Consensus 86 L~eVd~RY~qY~~Qmq~VvssFe~ 109 (140)
T PF07526_consen 86 LDEVDRRYRQYYDQMQAVVSSFEA 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999998864
No 175
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=25.64 E-value=64 Score=24.33 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHHH
Q 028770 48 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL 82 (204)
Q Consensus 48 ~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~l 82 (204)
+.-+++..+..... -.|+|+||+-|..++...+
T Consensus 69 ~~G~~~~~~a~~~G--~~G~VidG~vRD~~~i~~~ 101 (150)
T TIGR01935 69 LLGDNLAVLAEENG--WEGVIVNGCVRDVAELAGM 101 (150)
T ss_pred eehHHHHHHHHHCC--CEEEEEeecccCHHHHhhC
Confidence 33455544444433 4799999999999998765
No 176
>PHA02436 hypothetical protein
Probab=25.44 E-value=48 Score=19.62 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=17.4
Q ss_pred ceeEEeCCCCHHHHHHHHHHHH
Q 028770 167 VTVEVNGSVNKEDVFAQIDVAL 188 (204)
Q Consensus 167 ~~~~Ida~~~~~~V~~~i~~~l 188 (204)
.+..+=|++.+++||+.+.+.+
T Consensus 10 iiKE~yGeRkIEEVFeE~YE~~ 31 (52)
T PHA02436 10 IIKETYGERNIEEVFKEAYESF 31 (52)
T ss_pred EeehhhchhhHHHHHHHHHHHh
Confidence 3556779999999999987755
No 177
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=24.46 E-value=3.9e+02 Score=23.04 Aligned_cols=72 Identities=24% Similarity=0.441 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHc--CCCCCHHHHHHHHHHHhcCCCCCCCc-EEEe----ccCCCHHHHHHHHHcCCC
Q 028770 16 AGDLLRAEIAAGSENGKRAKEHMEK--GQLVPDEIVVTMVKERLSQPDSQENG-WLLD----GYPRSLSQATALKKYGFQ 88 (204)
Q Consensus 16 ~~dllr~~i~~~t~~g~~i~~~l~~--G~~vpde~i~~ll~~~l~~~~~~~~G-~ILD----GfPrt~~Qa~~l~~~~~~ 88 (204)
+.+++......+--....|.+.|.. |+.+|+-=..+-+.+.+... -| +|.| ||-|--...=.++.++..
T Consensus 196 vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~a----GGv~IaDEVQvGFGRvG~hyWafq~y~fi 271 (452)
T KOG1403|consen 196 VKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSA----GGVCIADEVQVGFGRVGSHYWAFQTYNFI 271 (452)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcC----CCeEEeehhhhcccccchhhhhhhhhccc
Confidence 3455666666666677788888875 77788877777777777754 34 4555 787765544444444444
Q ss_pred CCE
Q 028770 89 PDL 91 (204)
Q Consensus 89 p~~ 91 (204)
||.
T Consensus 272 PDI 274 (452)
T KOG1403|consen 272 PDI 274 (452)
T ss_pred cch
Confidence 543
No 178
>COG0645 Predicted kinase [General function prediction only]
Probab=24.17 E-value=3.4e+02 Score=20.99 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=55.9
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHcCChhHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC--C--CCCcEEEec-c--CC
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD--S--QENGWLLDG-Y--PR 74 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~--~--~~~G~ILDG-f--Pr 74 (204)
...+++.+|-.+|+.+++ |+.+......-. ...| ++..-+...+...|...- + ....+|||+ | |.
T Consensus 18 A~~l~~~lgA~~lrsD~i-rk~L~g~p~~~r-----~~~g--~ys~~~~~~vy~~l~~~A~l~l~~G~~VVlDa~~~r~~ 89 (170)
T COG0645 18 ARGLAELLGAIRLRSDVI-RKRLFGVPEETR-----GPAG--LYSPAATAAVYDELLGRAELLLSSGHSVVLDATFDRPQ 89 (170)
T ss_pred HHHHHhhcCceEEehHHH-HHHhcCCccccc-----CCCC--CCcHHHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHH
Confidence 356788999999996555 655554111000 0012 222222222222222210 0 133479997 4 33
Q ss_pred CHHHHHHHHHcCCCCCEEEEecCCHHHHHHHHhCCCcCC
Q 028770 75 SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDP 113 (204)
Q Consensus 75 t~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~~~~ 113 (204)
..+-+..+...-.-|-..|.+++|.+++..|+..|.-|+
T Consensus 90 ~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~ 128 (170)
T COG0645 90 ERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDA 128 (170)
T ss_pred HHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCc
Confidence 333333333332345677999999999999999997543
No 179
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=23.83 E-value=2.8e+02 Score=20.46 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=29.6
Q ss_pred hhhhHhCCceeCHHH----HHHHHHHcCC------------hhHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 028770 4 SSYMQYGLVHIAAGD----LLRAEIAAGS------------ENGKRAKEHMEK-GQLVPDEIVVTMVKER 56 (204)
Q Consensus 4 ~~a~~~gl~~is~~d----llr~~i~~~t------------~~g~~i~~~l~~-G~~vpde~i~~ll~~~ 56 (204)
.+.++||+..+|-.+ ++++.+.... .+|..+...+++ ++.+....+.+++++.
T Consensus 77 ~ii~~~~l~~isd~~el~~~v~~vi~~~~~~v~~~~~g~~k~~~~l~G~vMk~~~G~ad~~~v~~~l~~~ 146 (147)
T smart00845 77 EIVEEKGLKQISDEGELEAIVDEVIAENPKAVEDYRAGKKKALGFLVGQVMKATRGKADPKLVNELLKEK 146 (147)
T ss_pred HHHHHcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 467889999998653 3444444321 244455555442 3335666666666654
No 180
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=22.98 E-value=1.1e+02 Score=20.28 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=23.0
Q ss_pred CCcE-EEeccCCCHH----HHHHHHHcCCCCCEEEEec
Q 028770 64 ENGW-LLDGYPRSLS----QATALKKYGFQPDLFILLE 96 (204)
Q Consensus 64 ~~G~-ILDGfPrt~~----Qa~~l~~~~~~p~~vi~L~ 96 (204)
...| ++-.|||-.- --..|...|+.|..+++++
T Consensus 41 ~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 41 IDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3467 6699999421 2247888899999887764
No 181
>PF10798 YmgB: Biofilm development protein YmgB/AriR; InterPro: IPR024753 YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid, which indicates that YmgB has an important function in acid-resistance []. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole) [].; GO: 0042710 biofilm formation, 0071229 cellular response to acid; PDB: 2OXL_B.
Probab=22.80 E-value=1.9e+02 Score=18.19 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.2
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 028770 30 NGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 60 (204)
Q Consensus 30 ~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~ 60 (204)
+|..+++.+..|+.|...-++.-|-.+|+..
T Consensus 7 L~~iv~ell~~g~~vsnKaII~~LI~~LE~e 37 (61)
T PF10798_consen 7 LGAIVRELLASGGHVSNKAIILKLIHRLESE 37 (61)
T ss_dssp HHHHHHHHHHTT---SHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 6888899999999999965555555567653
No 182
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=22.78 E-value=87 Score=21.06 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHH
Q 028770 43 LVPDEIVVTMVK 54 (204)
Q Consensus 43 ~vpde~i~~ll~ 54 (204)
.||+++-.+++.
T Consensus 68 ~VP~~vk~ell~ 79 (86)
T PF10163_consen 68 MVPDEVKKELLQ 79 (86)
T ss_dssp CS-HHHHHHHHH
T ss_pred HCCHHHHHHHHH
Confidence 588887777664
No 183
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=22.39 E-value=6e+02 Score=23.14 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=19.6
Q ss_pred chhhhhHhCCceeCHHHHHHHHHHc
Q 028770 2 KSSSYMQYGLVHIAAGDLLRAEIAA 26 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~~i~~ 26 (204)
++.+|+++|+.+|-..|.+|+.+..
T Consensus 272 a~~LA~~lg~~~ii~tD~iR~~lr~ 296 (475)
T PRK12337 272 ASALAYRLGITRIVSTDAVREVLRA 296 (475)
T ss_pred HHHHHHHcCCcEEeehhHHHHHHHh
Confidence 4678999999988778888886653
No 184
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=22.29 E-value=1.9e+02 Score=22.26 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEeccCCCHHHHH----HHHHcCCCCCEEEEecCCHHHHHHHHhCCC
Q 028770 48 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT----ALKKYGFQPDLFILLEVPEDTLVERVVGRR 110 (204)
Q Consensus 48 ~i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~----~l~~~~~~p~~vi~L~~~~~~~~~R~~~r~ 110 (204)
+...++...+.+ ...+|+||--++..... .+.+.|... .++++.+|++..+.|...|.
T Consensus 81 ~~~~~~~~a~~~----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 81 LAEKLIEYAIEN----RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHHHHHHHHHC----T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHH
Confidence 334445555554 34699999666655444 344456654 47788899999999988874
No 185
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=21.81 E-value=4.7e+02 Score=21.78 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=46.9
Q ss_pred EEEEecCCHHHHHHHHhCCCcCCCCCceecccCCCCCchHhhhhccCCCCCcHHHHHH--HHHHHHHHHHHHHHHhh---
Q 028770 91 LFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKL--RLKTHHHNVEAVLSLYE--- 165 (204)
Q Consensus 91 ~vi~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~--Rl~~y~~~~~~v~~~y~--- 165 (204)
+=+.|++++++=.+|+..|..||.- +-.=++..++. |-..|-.....++.+=.
T Consensus 181 ~Kfwl~Is~eeQ~~RF~~R~~dP~K----------------------~WKlSp~D~~~r~~WddYt~A~~em~~~T~T~~ 238 (270)
T COG2326 181 VKFWLSISREEQLERFLERRNDPLK----------------------QWKLSPMDLESRDRWDDYTKAKDEMFARTSTPE 238 (270)
T ss_pred EEEEEeCCHHHHHHHHHHHhcCHHh----------------------ccCCCHHHHHHHHhHHHHHHHHHHHHhccCCCC
Confidence 4678999999999999999877621 11122333333 33456555554443322
Q ss_pred cceeEEeCCCCHHHHHHHHHHHHHH
Q 028770 166 DVTVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 166 ~~~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
.-++.|-|+.-.-.=.+.+..+|++
T Consensus 239 APW~vV~addKk~aRlnvi~~il~~ 263 (270)
T COG2326 239 APWYVVPADDKKRARLNVIRHLLSA 263 (270)
T ss_pred CCeEEEeCCcHHHHHHHHHHHHHHh
Confidence 2588888877655555555554443
No 186
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=21.80 E-value=1.2e+02 Score=20.04 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHH
Q 028770 168 TVEVNGSVNKEDVFAQIDVALTN 190 (204)
Q Consensus 168 ~~~Ida~~~~~~V~~~i~~~l~~ 190 (204)
=+.|+.+++.++|.+.|..+|.+
T Consensus 13 El~ies~~s~dev~~~v~~Al~~ 35 (74)
T PF11305_consen 13 ELVIESDQSADEVEAAVTDALAD 35 (74)
T ss_pred eEEEecCCCHHHHHHHHHHHHhC
Confidence 35789999999999999888864
No 187
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=21.56 E-value=55 Score=24.95 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCCCCCcEEEeccCCCHHHHHHH
Q 028770 49 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL 82 (204)
Q Consensus 49 i~~ll~~~l~~~~~~~~G~ILDGfPrt~~Qa~~l 82 (204)
.-+++........ -.|+|+||.-|..+|...+
T Consensus 74 ~G~~~~~~a~~~G--~~G~VidG~vRD~~~i~~~ 105 (159)
T PRK09372 74 VGDNLAELAVDNG--WEGIVVYGCVRDVDELAEL 105 (159)
T ss_pred ehHHHHHHHHHcC--CeEEEecccccCHHHHhhC
Confidence 3445544444332 4799999999999998754
No 188
>smart00574 POX domain associated with HOX domains.
Probab=21.52 E-value=1.4e+02 Score=22.31 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 028770 143 EEKVKLRLKTHHHNVEAVLSLYED 166 (204)
Q Consensus 143 ~e~i~~Rl~~y~~~~~~v~~~y~~ 166 (204)
-+.+.+|++.|++++..|...|..
T Consensus 86 L~eVd~RY~qY~~qmq~v~ssFe~ 109 (140)
T smart00574 86 LEEVDRRYKHYYEQMQTVVSSFDQ 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999998863
No 189
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=21.50 E-value=3.5e+02 Score=25.28 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.5
Q ss_pred eeEEeC-CCCHHHHHHHHHHHHHH
Q 028770 168 TVEVNG-SVNKEDVFAQIDVALTN 190 (204)
Q Consensus 168 ~~~Ida-~~~~~~V~~~i~~~l~~ 190 (204)
-+.||. ..+++++.+.|.+.|..
T Consensus 605 ~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 605 ELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457886 77999999999888754
No 190
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=21.37 E-value=1.5e+02 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=17.2
Q ss_pred CCCEEEEecCCHHHHHHHHhCC
Q 028770 88 QPDLFILLEVPEDTLVERVVGR 109 (204)
Q Consensus 88 ~p~~vi~L~~~~~~~~~R~~~r 109 (204)
..|.+|++++|.++.+.|...|
T Consensus 115 ~~D~~I~vd~~~e~r~~r~i~R 136 (273)
T cd02026 115 LLDFSVYLDISDEVKFAWKIQR 136 (273)
T ss_pred hccEEEEEECChhHHHHHHHHH
Confidence 3689999999999986655444
No 191
>PF15543 Toxin_65: Putative toxin 65
Probab=21.35 E-value=69 Score=22.76 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=23.0
Q ss_pred CcEEEeccCCCHHHHHHHHHcCCCCCEE
Q 028770 65 NGWLLDGYPRSLSQATALKKYGFQPDLF 92 (204)
Q Consensus 65 ~G~ILDGfPrt~~Qa~~l~~~~~~p~~v 92 (204)
.-+.|.|||-.+.-|..++..|.-|-.+
T Consensus 98 ~AV~I~G~~VDi~TA~~WE~~G~L~~GT 125 (135)
T PF15543_consen 98 SAVLIEGYPVDIPTARLWEAHGKLPAGT 125 (135)
T ss_pred cceeecCEEecchHHHHHHHhCcCcCcc
Confidence 4578899999999999999988766543
No 192
>COG4544 Uncharacterized conserved protein [Function unknown]
Probab=21.01 E-value=72 Score=26.12 Aligned_cols=29 Identities=31% Similarity=0.842 Sum_probs=23.0
Q ss_pred cEEE---eccCCCHHHHHHHHHcCCCCCEEEEecCCHH
Q 028770 66 GWLL---DGYPRSLSQATALKKYGFQPDLFILLEVPED 100 (204)
Q Consensus 66 G~IL---DGfPrt~~Qa~~l~~~~~~p~~vi~L~~~~~ 100 (204)
-||+ ||||-- |...|+.|+.+|+..|+++
T Consensus 88 vWi~tr~dlf~pa------L~~~Gl~~~RlifVea~~e 119 (260)
T COG4544 88 VWILTREDLFPPA------LAAFGLDPERLIFVEARKE 119 (260)
T ss_pred EEEEecccccchh------HhhcCCChhhEEEEeCCcH
Confidence 3777 677655 6778999999999999876
No 193
>PRK00889 adenylylsulfate kinase; Provisional
Probab=20.97 E-value=3.3e+02 Score=20.21 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=24.4
Q ss_pred cEEEecc-CCCHHHHHHHHHcCCCCCEEEEecCCHHHHHHHH
Q 028770 66 GWLLDGY-PRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 106 (204)
Q Consensus 66 G~ILDGf-Prt~~Qa~~l~~~~~~p~~vi~L~~~~~~~~~R~ 106 (204)
.+++|+. |. ....+.+.... .+-.+|+|++|.+++.+|.
T Consensus 78 ~vi~~~~~~~-~~~~~~l~~~~-~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 78 IVLVSAISPY-RETREEVRANI-GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred EEEEecCCCC-HHHHHHHHhhc-CCeEEEEEcCCHHHHHHhC
Confidence 3556654 32 33334444432 3446999999999999994
No 194
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=20.82 E-value=50 Score=20.03 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=15.7
Q ss_pred chhhhhHhCCceeCHHHHHHH
Q 028770 2 KSSSYMQYGLVHIAAGDLLRA 22 (204)
Q Consensus 2 ~~~~a~~~gl~~is~~dllr~ 22 (204)
++.+|++||+..=++.+++.+
T Consensus 25 ~~~ia~~fgv~~sTv~~I~K~ 45 (53)
T PF04218_consen 25 KRDIAREFGVSRSTVSTILKN 45 (53)
T ss_dssp HHHHHHHHT--CCHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHh
Confidence 467899999999888888775
Done!