Query         028770
Match_columns 204
No_of_seqs    120 out of 1113
Neff          8.3 
Searched_HMMs 13730
Date          Tue Mar 26 18:23:21 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/028770.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2262-2266//hhsearch_scop/028770hhsearch_scop 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d3adka_ c.37.1.1 (A:) Adenylat 100.0 6.5E-32 4.7E-36  195.5  18.4  166    2-190    25-192 (194)
  2 d1ak2a1 c.37.1.1 (A:14-146,A:1 100.0 1.5E-29 1.1E-33  182.2  21.7  163    2-191    20-188 (190)
  3 d2ak3a1 c.37.1.1 (A:0-124,A:16 100.0 1.3E-29 9.2E-34  182.7  18.6  160    2-198    23-184 (189)
  4 d1e4va1 c.37.1.1 (A:1-121,A:15 100.0 6.4E-30 4.7E-34  184.4  16.8  155    2-188    17-178 (179)
  5 d2cdna1 c.37.1.1 (A:1-181) Ade 100.0 4.4E-29 3.2E-33  179.7  18.4  160    2-189    17-180 (181)
  6 d1ukza_ c.37.1.1 (A:) Uridylat 100.0 6.1E-29 4.5E-33  178.9  17.1  168    2-192    25-196 (196)
  7 d1qf9a_ c.37.1.1 (A:) UMP/CMP  100.0 3.5E-28 2.6E-32  174.6  20.1  165    2-191    23-192 (194)
  8 d1s3ga1 c.37.1.1 (A:1-125,A:16 100.0 7.7E-28 5.6E-32  172.7  21.2  157    2-190    17-179 (182)
  9 d1zaka1 c.37.1.1 (A:3-127,A:15 100.0 2.6E-28 1.9E-32  175.4  18.1  169    2-201    20-188 (189)
 10 d1akya1 c.37.1.1 (A:3-130,A:16 100.0 7.8E-28 5.7E-32  172.7  18.1  154    2-189    19-178 (180)
 11 d1teva_ c.37.1.1 (A:) UMP/CMP  100.0 6.8E-28   5E-32  173.0  17.7  166    2-190    18-192 (194)
 12 d1zina1 c.37.1.1 (A:1-125,A:16  99.9 2.8E-25   2E-29  158.4  20.7  159    2-192    17-181 (182)
 13 d1nn5a_ c.37.1.1 (A:) Thymidyl  99.0 1.3E-08 9.5E-13   65.2  14.1  135   27-196    43-200 (209)
 14 d4tmka_ c.37.1.1 (A:) Thymidyl  98.7 5.3E-07 3.9E-11   56.3  13.9   77   86-193   129-208 (210)
 15 d1tmka_ c.37.1.1 (A:) Thymidyl  98.6 9.2E-07 6.7E-11   54.9  13.5  146   26-197    39-207 (214)
 16 d1q3ta_ c.37.1.1 (A:) CMP kina  98.6 2.4E-12 1.7E-16   86.1 -16.0  179    2-192    20-223 (223)
 17 d1e6ca_ c.37.1.2 (A:) Shikimat  98.5 9.5E-07 6.9E-11   54.8  11.4  145    3-188    20-168 (170)
 18 d1khta_ c.37.1.1 (A:) Adenylat  98.4   6E-07 4.4E-11   55.9   7.6  159    2-188    18-189 (190)
 19 d1knqa_ c.37.1.17 (A:) Glucona  98.4 9.9E-07 7.2E-11   54.7   8.4  140    3-189    24-170 (171)
 20 d1ckea_ c.37.1.1 (A:) CMP kina  98.3 3.5E-08 2.5E-12   62.9   0.4   48  144-193   175-223 (225)
 21 d1y63a_ c.37.1.1 (A:) Probable  98.3 1.7E-06 1.2E-10   53.5   8.5  147    2-190    22-169 (174)
 22 d1nksa_ c.37.1.1 (A:) Adenylat  98.3 3.1E-06 2.3E-10   52.0   9.6  158    3-188    19-193 (194)
 23 d1gsia_ c.37.1.1 (A:) Thymidyl  97.9 1.9E-05 1.4E-09   47.5   7.3   77   86-184   130-207 (208)
 24 d1p5zb_ c.37.1.1 (B:) Deoxycyt  97.8 3.7E-05 2.7E-09   45.9   7.0   83   87-194   151-240 (241)
 25 d1rkba_ c.37.1.1 (A:) Adenylat  97.8 3.7E-05 2.7E-09   45.9   6.9  141    2-189    21-162 (173)
 26 d2bdta1 c.37.1.25 (A:1-176) Hy  97.6 9.6E-05   7E-09   43.6   6.5  146    3-190    20-170 (176)
 27 d1viaa_ c.37.1.2 (A:) Shikimat  97.5 4.2E-05 3.1E-09   45.6   4.2  142    3-188    18-160 (161)
 28 d1zaka2 g.41.2.1 (A:128-158) M  97.5 1.9E-05 1.4E-09   47.5   2.1   31  108-138     1-31  (31)
 29 d1ly1a_ c.37.1.1 (A:) Polynucl  97.3  0.0007 5.1E-08   38.8   8.4   99    8-110    26-127 (152)
 30 d1akya2 g.41.2.1 (A:131-168) M  97.3 3.5E-05 2.5E-09   46.1   1.4   34  108-141     1-38  (38)
 31 d2iyva1 c.37.1.2 (A:2-166) Shi  97.1  0.0017 1.2E-07   36.7   8.7  144    3-187    19-164 (165)
 32 d2ocpa1 c.37.1.1 (A:37-277) De  96.9  0.0011 7.8E-08   37.8   6.0   78   87-189   148-232 (241)
 33 d1jjva_ c.37.1.1 (A:) Dephosph  96.9   0.011 7.9E-07   32.2  12.3  149    4-193    20-195 (205)
 34 d2ak3a2 g.41.2.1 (A:125-161) M  96.8 0.00012 8.6E-09   43.1   0.3   33  108-140     1-37  (37)
 35 d1e4va2 g.41.2.1 (A:122-156) M  96.3 0.00039 2.8E-08   40.3   0.6   26  108-133     1-26  (35)
 36 d1zina2 g.41.2.1 (A:126-160) M  95.9 0.00086 6.2E-08   38.3   0.6   27  108-134     1-27  (35)
 37 d1s3ga2 g.41.2.1 (A:126-160) M  95.8 0.00099 7.2E-08   38.0   0.7   27  108-134     1-27  (35)
 38 d1yj5a2 c.37.1.1 (A:351-522) 5  95.2   0.052 3.8E-06   28.4   7.9   80    4-112    33-116 (172)
 39 d1ak2a2 g.41.2.1 (A:147-176) M  95.0  0.0032 2.3E-07   35.1   1.2   22  113-134     1-22  (30)
 40 d1zp6a1 c.37.1.25 (A:6-181) Hy  94.6    0.07 5.1E-06   27.6   7.2  142    3-191    22-171 (176)
 41 d2vp4a1 c.37.1.1 (A:12-208) De  94.2   0.043 3.2E-06   28.8   5.3   26   85-110   132-157 (197)
 42 d1gkya_ c.37.1.1 (A:) Guanylat  94.1    0.12   9E-06   26.2   7.6   89   65-189    93-183 (186)
 43 d1vhta_ c.37.1.1 (A:) Dephosph  92.5    0.27   2E-05   24.3   7.7  151    4-196    21-199 (208)
 44 d1kaga_ c.37.1.2 (A:) Shikimat  91.5    0.36 2.6E-05   23.7   7.4  146    2-188    19-168 (169)
 45 d1uf9a_ c.37.1.1 (A:) Dephosph  90.8    0.42   3E-05   23.3   9.2  145    5-191    22-189 (191)
 46 d1lvga_ c.37.1.1 (A:) Guanylat  89.9     0.5 3.6E-05   22.9   7.7   81   80-195   104-188 (190)
 47 d1osna_ c.37.1.1 (A:) Thymidin  82.8    0.39 2.8E-05   23.5   2.7   45   67-111   119-182 (331)
 48 d1e2ka_ c.37.1.1 (A:) Thymidin  80.7     1.5 0.00011   20.2   6.9   47   65-111   112-177 (329)
 49 d1znwa1 c.37.1.1 (A:20-201) Gu  79.9     1.6 0.00012   20.0  11.6   75   79-188   106-181 (182)
 50 d1p6xa_ c.37.1.1 (A:) Thymidin  76.3    0.67 4.9E-05   22.2   2.2   46   66-111   115-179 (333)
 51 d1qhxa_ c.37.1.3 (A:) Chloramp  73.1     1.4 9.9E-05   20.4   3.1   87   65-188    87-176 (178)
 52 d1uj2a_ c.37.1.6 (A:) Uridine-  60.0     4.7 0.00034   17.4   6.2   42   64-110   111-152 (213)
 53 d1bifa1 c.37.1.7 (A:37-249) 6-  25.2     7.1 0.00052   16.4   0.0   43   65-107    87-132 (213)
 54 d1s96a_ c.37.1.1 (A:) Guanylat  24.9      18  0.0013   14.1   9.7   61  123-189   121-182 (205)

No 1  
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=100.00  E-value=6.5e-32  Score=195.50  Aligned_cols=166  Identities=36%  Similarity=0.608  Sum_probs=154.7

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      |..||++||++|||+|+++|+++...++.|..+.+++.+|..+|++++..++..++....+..+|||+||||++..||+.
T Consensus        25 a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ildg~pr~~~qa~~  104 (194)
T d3adka_          25 CEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEE  104 (194)
T ss_dssp             HHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTTCSCEEEESCCSSHHHHHH
T ss_pred             HHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEHHHHHHHCCCCCCCCEEEECCCHHHHHHH
T ss_conf             99999986984683347899999876765145677776313776222441024566403223566024311101578999


Q ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99829999778885389899999984797679888200146899982575411057899939999999999999799999
Q 028770           82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL  161 (204)
Q Consensus        82 l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~  161 (204)
                      +......|..++++.++.+++.+|...+.                       +..+|.+|.++.+.+|+..|++++.|++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----------------------~~~~r~~d~~e~i~~R~~~y~~~~~~~~  161 (194)
T d3adka_         105 FERKIGQPTLLLYVDAGPETMTKRLLKRG-----------------------ETSGRVDDNEETIKKRLETYYKATEPVI  161 (194)
T ss_dssp             HHHHTCCCSEEEEEECCHHHHHHHHHHHH-----------------------HHHTCCCCCSTTHHHHHHHHHHHTHHHH
T ss_pred             HHHHHCCCCCHHCCCCCHHHHHHHHHHHC-----------------------CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99983775200003331256676764200-----------------------0126775028999999999999888999


Q ss_pred             HHHHC--CEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             98323--566780999978899999999999
Q 028770          162 SLYED--VTVEVNGSVNKEDVFAQIDVALTN  190 (204)
Q Consensus       162 ~~y~~--~~~~IDa~~~~~~V~~~i~~~l~~  190 (204)
                      +||++  .++.|||++++++||++|.+.|++
T Consensus       162 ~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         162 AFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             9998459889998999999999999999985


No 2  
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=99.97  E-value=1.5e-29  Score=182.24  Aligned_cols=163  Identities=33%  Similarity=0.608  Sum_probs=149.4

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      |..||++||++||++|+++|++...+|+.|..++.++.+|..+|++.+..++..++.+... .+|||+||||++..|+..
T Consensus        20 a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~-~~g~ii~g~pr~~~qa~~   98 (190)
T d1ak2a1          20 APKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC-KNGFLLDGFPRTVRQAEM   98 (190)
T ss_dssp             HHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG-TTCEEEESCCCSHHHHHH
T ss_pred             HHHHHHHHCCEEEEHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEHHHHCCCCC-CCCEEECCCCCCHHHHHH
T ss_conf             9999998698577577889988742674330233132167743330245311134015433-475442222100038899


Q ss_pred             HHH----CCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             998----2999977888538989999998479767988820014689998257541105789993999999999999979
Q 028770           82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV  157 (204)
Q Consensus        82 l~~----~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~  157 (204)
                      |..    .+..|.+++.|+|+++.+.+|+..|..                          +.+++++.+.+|+..|++++
T Consensus        99 l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~--------------------------~~d~~~e~i~~R~~~y~~~~  152 (190)
T d1ak2a1          99 LDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI--------------------------HSDDNKKALKIRLEAYHTQT  152 (190)
T ss_dssp             HHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE--------------------------CCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC--------------------------CCCHHHHHHHHHHHHHHHHH
T ss_conf             9987452145511010111037888745305777--------------------------77413689999999999989


Q ss_pred             HHHHHHHHC--CEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             999998323--5667809999788999999999997
Q 028770          158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL  191 (204)
Q Consensus       158 ~~i~~~y~~--~~~~IDa~~~~~~V~~~i~~~l~~~  191 (204)
                      .|++++|.+  .++.|||++++++||++|..+|...
T Consensus       153 ~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~k~  188 (190)
T d1ak2a1         153 TPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  188 (190)
T ss_dssp             HHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             999999996698899989999999999999999775


No 3  
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=99.97  E-value=1.3e-29  Score=182.72  Aligned_cols=160  Identities=34%  Similarity=0.579  Sum_probs=145.0

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      +..||++||++|||+|+++|+++..+++.|..++..+..|.++|++++..++.+.+....  ..|||||||||+..|++.
T Consensus        23 a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~--~~~~ildGfPr~~~q~~~  100 (189)
T d2ak3a1          23 SSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT--QYNWLLDGFPRTLPQAEA  100 (189)
T ss_dssp             HHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT--TSCEEEESCCCSHHHHHH
T ss_pred             HHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HCCCCCCCCCCHHHHHHH
T ss_conf             999999979868718999999987401566899987636641330344544555442121--058424452100067887


Q ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99829999778885389899999984797679888200146899982575411057899939999999999999799999
Q 028770           82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL  161 (204)
Q Consensus        82 l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~  161 (204)
                      |+.. ..|+.||+|+||++.+.+|+..|                                 ++.+.+|+..|++++.|++
T Consensus       101 l~~~-~~~~~vi~L~v~~~~l~~R~~~r---------------------------------~e~~~kr~~~y~~~~~~v~  146 (189)
T d2ak3a1         101 LDRA-YQIDTVINLNVPFEVIKQRLTDR---------------------------------PETVVKRLKAYEAQTEPVL  146 (189)
T ss_dssp             HHTT-CCCCEEEEEECCHHHHHHHHTGS---------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHC-CCCEEEEEEECCCHHHHHHCCCC---------------------------------HHHHHHHHHHHHHHHHHHH
T ss_conf             6315-75329999724411312101440---------------------------------5899999999999988999


Q ss_pred             HHHHC--CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98323--56678099997889999999999977632320
Q 028770          162 SLYED--VTVEVNGSVNKEDVFAQIDVALTNLLEQRKSA  198 (204)
Q Consensus       162 ~~y~~--~~~~IDa~~~~~~V~~~i~~~l~~~~~~~~~~  198 (204)
                      +||.+  .++.|||+. +++||++|...|.+.+.++...
T Consensus       147 ~~Y~~~~~l~~idg~~-~~eV~~~I~~~i~~~l~~~~~~  184 (189)
T d2ak3a1         147 EYYRKKGVLETFSGTE-TNKIWPHVYAFLQTKLPQRSQE  184 (189)
T ss_dssp             HHHHHHTCEEEEECSS-HHHHHHHHHHHHHTTSCBCSCC
T ss_pred             HHHHHCCCEEEECCCC-HHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999639899988987-5899999999998773401667


No 4  
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=6.4e-30  Score=184.36  Aligned_cols=155  Identities=39%  Similarity=0.687  Sum_probs=143.6

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      |..||++||++|||+++++|++...+|+.|..+++++.+|.++|++++..++..++....+ .+||++||||++..|+..
T Consensus        17 ~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~-~~g~i~~g~pr~~~~~~~   95 (179)
T d1e4va1          17 AQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC-RNGFLLDGFPRTIPQADA   95 (179)
T ss_dssp             HHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG-GGCEEEESCCCSHHHHHH
T ss_pred             HHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC-CCCEEECCCCCCHHHHHH
T ss_conf             9999998699555101476775503985899999999769987116399999985225210-166342244530577655


Q ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99829999778885389899999984797679888200146899982575411057899939999999999999799999
Q 028770           82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL  161 (204)
Q Consensus        82 l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~  161 (204)
                      +.+.+..|+.||+|+||++++.+|+..|                               |.++.+.+|+..|++.+.|++
T Consensus        96 ~~~~~~~~~~vi~L~~~~~~l~~R~~~~-------------------------------~~~e~i~~r~~~y~~~~~~v~  144 (179)
T d1e4va1          96 MKEAGINVDYVLEFDVPDELIVDRIVKD-------------------------------DQEETVRKRLVEYHQMTAPLI  144 (179)
T ss_dssp             HHHTTCCCSEEEEEECCHHHHHHHHHTT-------------------------------CSHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHCCCCCEEEEEECCCHHHHHHHHCCC-------------------------------CCHHHHHHHHHHHHHHHHHHH
T ss_conf             4440687039998446212332230044-------------------------------227999988999999999999


Q ss_pred             HHHHC-------CEEEEECCCCHHHHHHHHHHHH
Q ss_conf             98323-------5667809999788999999999
Q 028770          162 SLYED-------VTVEVNGSVNKEDVFAQIDVAL  188 (204)
Q Consensus       162 ~~y~~-------~~~~IDa~~~~~~V~~~i~~~l  188 (204)
                      ++|..       +++.|||++++++|+++|..+|
T Consensus       145 ~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         145 GYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             HHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             9999842246772799989999999999999975


No 5  
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.97  E-value=4.4e-29  Score=179.68  Aligned_cols=160  Identities=35%  Similarity=0.592  Sum_probs=148.2

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      |..||++||++||++++++++++...++.|..++.++++|..+|++++..++..++....+ ..||++||||++..|+..
T Consensus        17 a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~i~d~~p~~~~~~~~   95 (181)
T d2cdna1          17 AVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA-ANGFILDGYPRSVEQAKA   95 (181)
T ss_dssp             HHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGG-TTCEEEESCCCSHHHHHH
T ss_pred             HHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEECCCCCCHHHHHH
T ss_conf             9999999899167257889987710035677899999864111468999999987627454-561784166432057999


Q ss_pred             HHH----CCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             998----2999977888538989999998479767988820014689998257541105789993999999999999979
Q 028770           82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV  157 (204)
Q Consensus        82 l~~----~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~  157 (204)
                      |..    .+..|+++++|+|+++++.+|+.+|.                           |.+|.++.+.+|+..|++++
T Consensus        96 l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~---------------------------r~~~~~~~i~~rl~~y~~~~  148 (181)
T d2cdna1          96 LHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---------------------------RADDTDDVILNRMKVYRDET  148 (181)
T ss_dssp             HHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------CTTCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCC---------------------------CCCCHHHHHHHHHHHHHHHH
T ss_conf             998778619986588761577899986633443---------------------------43301388999999999989


Q ss_pred             HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99999832356678099997889999999999
Q 028770          158 EAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  189 (204)
Q Consensus       158 ~~i~~~y~~~~~~IDa~~~~~~V~~~i~~~l~  189 (204)
                      .|+.++|+++++.|||++++++||++|..+|.
T Consensus       149 ~~l~~~y~~~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         149 APLLEYYRDQLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             TTHHHHTTTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf             89999985185999798999999999999968


No 6  
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.96  E-value=6.1e-29  Score=178.88  Aligned_cols=168  Identities=30%  Similarity=0.565  Sum_probs=150.6

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHC-CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-CCCCCEEEECCCCCHHHH
Q ss_conf             0004647199410788999999982-99459999999883999799999999999863999-999857884668999989
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD-SQENGWLLDGYPRSLSQA   79 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~-~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~-~~~~G~vldGfPrt~~Qa   79 (204)
                      +..||++||++|||+|+++|+++.. .+.+|..++.+...|.++|+..+..++..++.... +...|||+||||++..|+
T Consensus        25 a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~g~p~~~~q~  104 (196)
T d1ukza_          25 CEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQA  104 (196)
T ss_dssp             HHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEEEEETCCCSHHHH
T ss_pred             HHHHHHHHCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH
T ss_conf             99999985990885358999886201017889988764000023203678999999886400377753540431368999


Q ss_pred             HHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99998299997788853898999999847976798882001468999825754110578999399999999999997999
Q 028770           80 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA  159 (204)
Q Consensus        80 ~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~  159 (204)
                      ..+......|+.+++|+++++++.+|+..+.                       +..+|.++..+.+.+|+..|++++.|
T Consensus       105 ~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~-----------------------~~~~r~~~~~e~~~~r~~~y~~~~~~  161 (196)
T d1ukza_         105 ISFERDIVESKFILFFDCPEDIMLERLLERG-----------------------KTSGRSDDNIESIKKRFNTFKETSMP  161 (196)
T ss_dssp             HHHHHHTCCCSEEEEEECCHHHHHHHHHHHH-----------------------HHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHCCCCCEEECCCCCHHHHHHHHHHCC-----------------------CCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999861545543125798999999987314-----------------------45565522788999889999998899


Q ss_pred             HHHHHHC--CEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             9998323--56678099997889999999999977
Q 028770          160 VLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLL  192 (204)
Q Consensus       160 i~~~y~~--~~~~IDa~~~~~~V~~~i~~~l~~~~  192 (204)
                      +++||+.  +++.|||++++++||++|+.+|.+.+
T Consensus       162 l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~L  196 (196)
T d1ukza_         162 VIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDSL  196 (196)
T ss_dssp             HHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             99999956988999899999999999999997249


No 7  
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=99.96  E-value=3.5e-28  Score=174.62  Aligned_cols=165  Identities=22%  Similarity=0.475  Sum_probs=148.6

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      +..||++||++||++|+++|+++...++.|..++.++..|..+|++.+..++..++....  .+||++||||++..|+..
T Consensus        23 a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~dg~p~~~~~~~~  100 (194)
T d1qf9a_          23 CANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQ--GKNFLVDGFPRNEENNNS  100 (194)
T ss_dssp             HHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTST--TCCEEEETCCCSHHHHHH
T ss_pred             HHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHH
T ss_conf             999999979926721268888751001332456667652123202789998887766653--287588730000456899


Q ss_pred             HHH---CCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             998---29999778885389899999984797679888200146899982575411057899939999999999999799
Q 028770           82 LKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE  158 (204)
Q Consensus        82 l~~---~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~  158 (204)
                      |..   ....|+++|+|+||++++.+|+..|..                       ...|.+|.++.+.+|+..|+++..
T Consensus       101 l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~-----------------------~~~~~~d~~e~~~~Rl~~y~~~~~  157 (194)
T d1qf9a_         101 WEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE-----------------------SSGRSDDNIESIKKRFNTFNVQTK  157 (194)
T ss_dssp             HHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT-----------------------TSCCTTCSHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCC-----------------------CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             986522036651799830413789999986022-----------------------234555438999999999999999


Q ss_pred             HHHHHHHC--CEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             99998323--5667809999788999999999997
Q 028770          159 AVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNL  191 (204)
Q Consensus       159 ~i~~~y~~--~~~~IDa~~~~~~V~~~i~~~l~~~  191 (204)
                      |++++|++  .++.|||++++++||++|..+|.+.
T Consensus       158 ~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~~  192 (194)
T d1qf9a_         158 LVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf             99999996799899979899999999999999976


No 8  
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=99.96  E-value=7.7e-28  Score=172.72  Aligned_cols=157  Identities=38%  Similarity=0.705  Sum_probs=142.8

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      +..||++||++|||+|+++|++....++.|..|+.++++|.++|+.....++..++....+ .+|||+||||++..|+..
T Consensus        17 a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~-~~~~vl~g~p~~~~~~~~   95 (182)
T d1s3ga1          17 ADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDC-DNGFLLDGFPRTVPQAEA   95 (182)
T ss_dssp             HHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTT-SSCEEEESCCCSHHHHHH
T ss_pred             HHHHHHHHCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC-CCCEEEECCCCCHHHHHH
T ss_conf             9999998799366388999886403780689999999869844672056778876505454-452355222222037888


Q ss_pred             HHH----CCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             998----2999977888538989999998479767988820014689998257541105789993999999999999979
Q 028770           82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV  157 (204)
Q Consensus        82 l~~----~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~  157 (204)
                      |.+    .+..+..++.|+++.+.+.+|+.                               .+|+++.+.+|+..|++++
T Consensus        96 l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~-------------------------------~~~~~e~i~~R~~~y~~~~  144 (182)
T d1s3ga1          96 LDQLLADMGRKIEHVLNIQVEKEELIARLT-------------------------------ADDNPDTVTNRLEVNMNQT  144 (182)
T ss_dssp             HHHHHHHTTCCCCEEEEEECCHHHHHHHHH-------------------------------TTCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEECCCHHHHHHHHHHHHH-------------------------------CCCHHHHHHHHHHHHHHHH
T ss_conf             988754289844220230010002454431-------------------------------2210099999999999999


Q ss_pred             HHHHHHHHC--CEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             999998323--566780999978899999999999
Q 028770          158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  190 (204)
Q Consensus       158 ~~i~~~y~~--~~~~IDa~~~~~~V~~~i~~~l~~  190 (204)
                      .|+.+||.+  +++.|||++++++||++|..+|..
T Consensus       145 ~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~~  179 (182)
T d1s3ga1         145 APLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG  179 (182)
T ss_dssp             HHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             99999998359899998999989999999999976


No 9  
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=99.96  E-value=2.6e-28  Score=175.40  Aligned_cols=169  Identities=63%  Similarity=0.926  Sum_probs=154.6

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      |..||++||++|||+++++++.+...++.+..+.+.+..|..+|+++...++..++....+..+|||+||||++..|+..
T Consensus        20 a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vid~~~~~~~q~~~   99 (189)
T d1zaka1          20 CELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMA   99 (189)
T ss_dssp             HHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTCEEEESCCCSHHHHHH
T ss_pred             HHHHHHHHCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf             99999987991785007888764113378999999986688543212103566676530144673796062124677754


Q ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99829999778885389899999984797679888200146899982575411057899939999999999999799999
Q 028770           82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL  161 (204)
Q Consensus        82 l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~  161 (204)
                      |...+..|+.+|+|+++++++.+|+..+.                               +++.+.+|+..|++++.++.
T Consensus       100 l~~~~~~p~~~i~L~~~~e~l~~R~~~~~-------------------------------~~e~~~~rl~~y~~~~~~l~  148 (189)
T d1zaka1         100 LETLEIRPDTFILLDVPDELLVERVVFDD-------------------------------TEEKVKLRLETYYQNIESLL  148 (189)
T ss_dssp             HHTTTCCCSEEEEEECCHHHHHHHHTTTC-------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCHHEEECHHHHHHHHHCCCCC-------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_conf             43013451121011100465542013431-------------------------------07899999999999898999


Q ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9832356678099997889999999999977632320066
Q 028770          162 SLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRKSALGS  201 (204)
Q Consensus       162 ~~y~~~~~~IDa~~~~~~V~~~i~~~l~~~~~~~~~~~~~  201 (204)
                      ++|++.++.|||++++++|+++|...|...+.++.+..-|
T Consensus       149 ~~y~~~~~~Id~~~~idev~~~I~~~l~~il~~~~~~~~~  188 (189)
T d1zaka1         149 STYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSS  188 (189)
T ss_dssp             HTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9848878999899999999999999999886412301358


No 10 
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.96  E-value=7.8e-28  Score=172.69  Aligned_cols=154  Identities=33%  Similarity=0.565  Sum_probs=140.9

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      +..||++||++||+++++++++....++.|..++.++..|.++|++++..++..++.+..+..+|||+||||++..|++.
T Consensus        19 a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~dg~p~~~~q~~~   98 (180)
T d1akya1          19 APNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEK   98 (180)
T ss_dssp             HHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSCEEEESCCCSHHHHHH
T ss_pred             HHHHHHHHCCCEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHH
T ss_conf             99999996994583442000001367707899999876331332203677778888618211387732574200335778


Q ss_pred             HH----HCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99----82999977888538989999998479767988820014689998257541105789993999999999999979
Q 028770           82 LK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV  157 (204)
Q Consensus        82 l~----~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~  157 (204)
                      +.    ..+..|+.+|+|+++++++.+|+..+                                  +.+.+|+..|++++
T Consensus        99 ~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~----------------------------------~~~~~r~~~y~~~~  144 (180)
T d1akya1          99 LDQMLKEQGTPLEKAIELKVDDELLVARITNA----------------------------------DALKKRLAAYHAQT  144 (180)
T ss_dssp             HHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH----------------------------------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCHHHHCCCCC----------------------------------CCCCCHHHHHHHHH
T ss_conf             77668870997426653023320132002222----------------------------------11012699999999


Q ss_pred             HHHHHHHHC--CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             999998323--56678099997889999999999
Q 028770          158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALT  189 (204)
Q Consensus       158 ~~i~~~y~~--~~~~IDa~~~~~~V~~~i~~~l~  189 (204)
                      .|+.++|++  +++.|||++++++||++|...|.
T Consensus       145 ~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         145 EPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             THHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf             9999999966988999799999999999999980


No 11 
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96  E-value=6.8e-28  Score=173.04  Aligned_cols=166  Identities=25%  Similarity=0.485  Sum_probs=147.1

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHC-CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC---CCCCCEEEECCCCCHH
Q ss_conf             0004647199410788999999982-99459999999883999799999999999863999---9998578846689999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD---SQENGWLLDGYPRSLS   77 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~-~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~---~~~~G~vldGfPrt~~   77 (204)
                      +..||++||++||++|+++|+++.. .++.+..+..++++|..+||+.+..++..++.+..   ...+||++|||||+..
T Consensus        18 a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~pr~~~   97 (194)
T d1teva_          18 CARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQD   97 (194)
T ss_dssp             HHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCCSHH
T ss_pred             HHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCEEECCCHHHHH
T ss_conf             99999986992676889999988762046899999997069721134036788876412100011245111011030489


Q ss_pred             HHHHHHHC---CCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             89999982---999977888538989999998479767988820014689998257541105789993999999999999
Q 028770           78 QATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHH  154 (204)
Q Consensus        78 Qa~~l~~~---~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~  154 (204)
                      |+..|+..   ...|+.+++++++.+.+.+|+..|..                       ..+|.+|.++.+.+|+..|+
T Consensus        98 ~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~-----------------------~~~r~~~~~e~i~~r~~~y~  154 (194)
T d1teva_          98 NLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK-----------------------SSGRSDDNRESLEKRIQTYL  154 (194)
T ss_dssp             HHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH-----------------------TSSCCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCHHHEEECCCCCC-----------------------CCCCCCCCHHHHHHHHHHHH
T ss_conf             9999864421055433899624763421110046787-----------------------44577641578999999999


Q ss_pred             HHHHHHHHHHHC--CEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             979999998323--566780999978899999999999
Q 028770          155 HNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTN  190 (204)
Q Consensus       155 ~~~~~i~~~y~~--~~~~IDa~~~~~~V~~~i~~~l~~  190 (204)
                      +++.|++++|++  .++.|||++++++|+++|.++|+.
T Consensus       155 ~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         155 QSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             99999999999559989997999999999999999822


No 12 
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.94  E-value=2.8e-25  Score=158.41  Aligned_cols=159  Identities=38%  Similarity=0.677  Sum_probs=144.6

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      +..||++||++||+++++++++....++.|..++.++.+|+++|++..+.++.+++....+ ..||+++|||++..|+..
T Consensus        17 a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~   95 (182)
T d1zina1          17 AEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDC-QNGFLLDGFPRTVAQAEA   95 (182)
T ss_dssp             HHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG-TTCEEEESCCCSHHHHHH
T ss_pred             HHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCHHH-HCCCCCCCCCCHHHHHHH
T ss_conf             9999998799266153899874026984469999999769800252277899987515254-258121553210378999


Q ss_pred             HHH----CCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             998----2999977888538989999998479767988820014689998257541105789993999999999999979
Q 028770           82 LKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNV  157 (204)
Q Consensus        82 l~~----~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~  157 (204)
                      +..    .+..|+.+++|+++.+.+.+|+..+                               |+++.+.+|+..|++++
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~-------------------------------~~~e~~~~Rl~~y~~~~  144 (182)
T d1zina1          96 LETMLADIGRKLDYVIHIDVRQDVLMERLTAD-------------------------------DNEATVANRLEVNMKQM  144 (182)
T ss_dssp             HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT-------------------------------CSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHCCCCC-------------------------------CCHHHHHHHHHHHHHHH
T ss_conf             98752225985012111112210233201354-------------------------------30278999999999988


Q ss_pred             HHHHHHHHC--CEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             999998323--56678099997889999999999977
Q 028770          158 EAVLSLYED--VTVEVNGSVNKEDVFAQIDVALTNLL  192 (204)
Q Consensus       158 ~~i~~~y~~--~~~~IDa~~~~~~V~~~i~~~l~~~~  192 (204)
                      .|++++|++  +++.|||++++++|+++|..+|....
T Consensus       145 ~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~~l~  181 (182)
T d1zina1         145 KPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLA  181 (182)
T ss_dssp             THHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             9999999956988999899998999999999997310


No 13 
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.98  E-value=1.3e-08  Score=65.24  Aligned_cols=135  Identities=22%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHCCCCCCCCCEEEECCCCC------------HHHHHHHH
Q ss_conf             994599999998839997999999999-----------9986399999985788466899------------99899999
Q 028770           27 GSENGKRAKEHMEKGQLVPDEIVVTMV-----------KERLSQPDSQENGWLLDGYPRS------------LSQATALK   83 (204)
Q Consensus        27 ~t~~g~~i~~~l~~G~~vpde~i~~ll-----------~~~l~~~~~~~~G~vldGfPrt------------~~Qa~~l~   83 (204)
                      .+++|..+++.+.....++.....-+.           ...+..    ...+|+|.|+-+            ......+.
T Consensus        43 ~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i~~~l~~----g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~  118 (209)
T d1nn5a_          43 STEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLSQ----GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPD  118 (209)
T ss_dssp             TSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHHHHT----TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGG
T ss_pred             CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCEEECCHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             76520246652000222340566657999999887768887621----44312121020033665640686488999886


Q ss_pred             HCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             82999977888538989999998479767988820014689998257541105789993999999999999979999998
Q 028770           84 KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL  163 (204)
Q Consensus        84 ~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~~~  163 (204)
                      .....||++|+|++|.+++.+|...+..                          +.+ +.+...+....|.+    +.+.
T Consensus       119 ~~~~~PDl~i~Ld~~~e~~~~R~~~~~~--------------------------~~E-~~~~~~r~~~~Y~~----l~~~  167 (209)
T d1nn5a_         119 VGLPKPDLVLFLQLQLADAAKRGAFGHE--------------------------RYE-NGAFQERALRCFHQ----LMKD  167 (209)
T ss_dssp             TTSBCCSEEEEEECCHHHHHHC-----C--------------------------TTC-SHHHHHHHHHHHHH----HTTC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHCCCCC--------------------------CCC-CHHHHHHHHHHHHH----HHHH
T ss_conf             0588882124405618877532012221--------------------------111-39999999999999----9972


Q ss_pred             HHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             323566780999978899999999999776323
Q 028770          164 YEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRK  196 (204)
Q Consensus       164 y~~~~~~IDa~~~~~~V~~~i~~~l~~~~~~~~  196 (204)
                      +..+++.|||++++++|.++|..++...+.+.+
T Consensus       168 ~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~~~~  200 (209)
T d1nn5a_         168 TTLNWKMVDASKSIEAVHEDIRVLSEDAIATAT  200 (209)
T ss_dssp             TTSCEEEEETTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             879889998999999999999999999987541


No 14 
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=98.68  E-value=5.3e-07  Score=56.26  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999977888538989999998479767988820014689998257541105789-9939999999999999799999983
Q 028770           86 GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF-DDTEEKVKLRLKTHHHNVEAVLSLY  164 (204)
Q Consensus        86 ~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~-dd~~e~i~~rl~~y~~~~~~i~~~y  164 (204)
                      ...||++|+|++|++++.+|+..|...                        .+. ....+...+-...|.+       ++
T Consensus       129 ~~~pdl~i~Ld~~~e~~~~Ri~~R~~~------------------------~~~~~~~~~~~~~v~~~y~~-------~~  177 (210)
T d4tmka_         129 DFRPDLTLYLDVTPEVGLKRARARGEL------------------------DRIEQESFDFFNRTRARYLE-------LA  177 (210)
T ss_dssp             TCCCSEEEEEECCHHHHHHHHHHHSSC------------------------CTTTTSCHHHHHHHHHHHHH-------HH
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHCCCC------------------------CHHHHCCHHHHHHHHHHHHH-------HH
T ss_conf             888843787431589988776620442------------------------01414049999999999999-------98


Q ss_pred             H--CCEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             2--3566780999978899999999999776
Q 028770          165 E--DVTVEVNGSVNKEDVFAQIDVALTNLLE  193 (204)
Q Consensus       165 ~--~~~~~IDa~~~~~~V~~~i~~~l~~~~~  193 (204)
                      .  .+++.|||++++++|.++|...+.+.+.
T Consensus       178 ~~~~~~~~IDa~~~~e~v~~~I~~~i~~~l~  208 (210)
T d4tmka_         178 AQDKSIHTIDATQPLEAVMDAIRTTVTHWVK  208 (210)
T ss_dssp             HTCTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             2599889998999999999999999999985


No 15 
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.61  E-value=9.2e-07  Score=54.91  Aligned_cols=146  Identities=14%  Similarity=0.131  Sum_probs=84.1

Q ss_pred             CCCHHHHHHHHHHHCCCC-CCHHHHHHHH-HHH------HCCCCCCCCCEEEECCCCC-HH-------------HHHHHH
Q ss_conf             299459999999883999-7999999999-998------6399999985788466899-99-------------899999
Q 028770           26 AGSENGKRAKEHMEKGQL-VPDEIVVTMV-KER------LSQPDSQENGWLLDGYPRS-LS-------------QATALK   83 (204)
Q Consensus        26 ~~t~~g~~i~~~l~~G~~-vpde~i~~ll-~~~------l~~~~~~~~G~vldGfPrt-~~-------------Qa~~l~   83 (204)
                      ..+++|..|++.+..... +++....-+. ..+      +.........+|.|.|.-+ .+             +...+.
T Consensus        39 ~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~  118 (214)
T d1tmka_          39 RSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPD  118 (214)
T ss_dssp             TTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99607676777654002345616778888888899988777877148706734743031676641366248899999887


Q ss_pred             HCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             82999977888538989999998479767988820014689998257541105789993999999999999979999998
Q 028770           84 KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL  163 (204)
Q Consensus        84 ~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~~~  163 (204)
                      .....||++|+|++|+.....|..++..+                         +.+ +.+...+-...|.+-...-...
T Consensus       119 ~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~-------------------------~~e-~~~~~~~v~~~Y~~l~~~~~~~  172 (214)
T d1tmka_         119 VGLLKPDLTLFLSTQDVDNNAEKSGFGDE-------------------------RYE-TVKFQEKVKQTFMKLLDKEIRK  172 (214)
T ss_dssp             TTSBCCSEEEEEECC----------CCSS-------------------------TTC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCCCCEEHHCCCCHHHHHHHHCCCCHH-------------------------HHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             42787630000166688887775255534-------------------------443-5999999999999999974540


Q ss_pred             HHCCEEEEECC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32356678099-99788999999999997763232
Q 028770          164 YEDVTVEVNGS-VNKEDVFAQIDVALTNLLEQRKS  197 (204)
Q Consensus       164 y~~~~~~IDa~-~~~~~V~~~i~~~l~~~~~~~~~  197 (204)
                      +...++.|||+ .++++|.++|...+...+..+..
T Consensus       173 ~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~~~~  207 (214)
T d1tmka_         173 GDESITIVDVTNKGIQEVEALIWQIVEPVLSTHID  207 (214)
T ss_dssp             TCTTEEEEECTTCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89868999899999999999999999999986338


No 16 
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=98.57  E-value=2.4e-12  Score=86.14  Aligned_cols=179  Identities=11%  Similarity=0.062  Sum_probs=83.8

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHCCC--------CCCCCCEEEECC
Q ss_conf             000464719941078899999998299459999999883999799999-99999986399--------999985788466
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV-VTMVKERLSQP--------DSQENGWLLDGY   72 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i-~~ll~~~l~~~--------~~~~~G~vldGf   72 (204)
                      |..||++||++|||+|+|+|....          ....+|...+...- ...........        .....++..+++
T Consensus        20 ak~La~~lg~~~istGdl~R~~a~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (223)
T d1q3ta_          20 AKIIAKDFGFTYLDTGAMYRAATY----------MALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVFVGDVDITHP   89 (223)
T ss_dssp             HHHHHHHHCCEEEEHHHHHHHHHH----------HHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEEETTEEESSS
T ss_pred             HHHHHHHHCCCEECHHHHHHHHHH----------HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
T ss_conf             999999969947877999999999----------9987089803777899997654554113201336776067532110


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECC--------CHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHH-H---HC--CCC
Q ss_conf             8999989999982999977888538--------98999999847976798882001468999825754-1---10--578
Q 028770           73 PRSLSQATALKKYGFQPDLFILLEV--------PEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA-A---RL--TKR  138 (204)
Q Consensus        73 Prt~~Qa~~l~~~~~~pd~vI~L~~--------~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~-~---rl--~~r  138 (204)
                      +++..+..........|.....+..        +...+..|..++.+++.++..|++..+|+...... .   ..  ..+
T Consensus        90 ~~~~~~~~~~s~ia~~~~~r~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  169 (223)
T d1q3ta_          90 IRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETD  169 (223)
T ss_dssp             SCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSSSGGGCSEEEEEECCHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             24678874788871776666777777899885588035311111101343011220122615432010121320022211


Q ss_pred             CCCCHHHHHHHHH-HHHHHHHHHHHHHHCCEEEEE-CCCCHHHHHHHHHHHHHHHH
Q ss_conf             9993999999999-999979999998323566780-99997889999999999977
Q 028770          139 FDDTEEKVKLRLK-THHHNVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVALTNLL  192 (204)
Q Consensus       139 ~dd~~e~i~~rl~-~y~~~~~~i~~~y~~~~~~ID-a~~~~~~V~~~i~~~l~~~~  192 (204)
                      .++..+.+.+|.. .|.....|+..++  ..+.|| ++.++++|++.|.+.+...+
T Consensus       170 ~~~~~~~i~~Rd~~D~~r~~~pL~~~~--~~i~Idts~~s~eeV~~~I~~~i~kkl  223 (223)
T d1q3ta_         170 LETLKKEIAARDYKDSHRETSPLKQAE--DAVYLDTTGLNIQEVVEKIKAEAEKRM  223 (223)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSSCCSCCT--TCEEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             677788999989876305557772679--859998999999999999999999539


No 17 
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=98.51  E-value=9.5e-07  Score=54.84  Aligned_cols=145  Identities=13%  Similarity=0.137  Sum_probs=82.7

Q ss_pred             HHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHCCCCCCCCCEEE--ECCCCCHHHH
Q ss_conf             00464719941078899999998299459999999883-99979999999999986399999985788--4668999989
Q 028770            3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQENGWLL--DGYPRSLSQA   79 (204)
Q Consensus         3 ~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~-G~~vpde~i~~ll~~~l~~~~~~~~G~vl--dGfPrt~~Qa   79 (204)
                      ..+|+++|+++++.++++++..  +.    .+.+.+.. |.    +...++....+..... ..+++.  .|.+......
T Consensus        20 ~~LA~~Lg~~~id~D~~ie~~~--g~----~i~ei~~~~g~----~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~   88 (170)
T d1e6ca_          20 RELARALGYEFVDTDIFMQHTS--GM----TVADVVAAEGW----PGFRRRESEALQAVAT-PNRVVATGGGMVLLEQNR   88 (170)
T ss_dssp             HHHHHHHTCEEEEHHHHHHHHH--CS----CHHHHHHHHHH----HHHHHHHHHHHHHHCC-SSEEEECCTTGGGSHHHH
T ss_pred             HHHHHHHCCCEEEHHHHHHHHH--HH----HHHHHHCCCCH----HHHHHHHHHHHHHHCC-CCCEECCCCCCHHHHHHH
T ss_conf             9999994998786565665554--10----00033303436----7889999998876413-440001443200016777


Q ss_pred             HHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99998299997788853898999999847976798882001468999825754110578999399999999999997999
Q 028770           80 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA  159 (204)
Q Consensus        80 ~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~  159 (204)
                      ..+.+.+    .+|+|++|.+.+.+|+..+...                       ..|...........+........|
T Consensus        89 ~~l~~~~----~~v~L~~~~e~l~~Rl~~~~~~-----------------------~~r~~~~~~~~~~~~~~~~~er~~  141 (170)
T d1e6ca_          89 QFMRAHG----TVVYLFAPAEELALRLQASLQA-----------------------HQRPTLTGRPIAEEMEAVLREREA  141 (170)
T ss_dssp             HHHHHHS----EEEEEECCHHHHHHHHHHHHCS-----------------------CCCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCC----EEEEEECCCHHHHHHHHHCCCC-----------------------CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             7651466----1699844704677887513334-----------------------557777789989999999999999


Q ss_pred             HHHHHHC-CEEEEECCCCHHHHHHHHHHHH
Q ss_conf             9998323-5667809999788999999999
Q 028770          160 VLSLYED-VTVEVNGSVNKEDVFAQIDVAL  188 (204)
Q Consensus       160 i~~~y~~-~~~~IDa~~~~~~V~~~i~~~l  188 (204)
                      +   |.+ --+.||++++++++..+|...|
T Consensus       142 l---Y~~~a~~~Id~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_         142 L---YQDVAHYVVDATQPPAAIVCELMQTM  168 (170)
T ss_dssp             H---HHHHCSEEEETTSCHHHHHHHHHHHT
T ss_pred             H---HHHCCCEEECCCCCHHHHHHHHHHHC
T ss_conf             9---99759899929799899999999980


No 18 
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=98.38  E-value=6e-07  Score=55.95  Aligned_cols=159  Identities=12%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             CHHHHHHH-----CCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCH
Q ss_conf             00046471-----9941078899999998299459999999883999799999999999863999999857884668999
Q 028770            2 KSSSYMQY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSL   76 (204)
Q Consensus         2 ~~~~a~~~-----g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~   76 (204)
                      +..|+++|     ++..++.++..+.+.........  ...+..................+.... ..+.+++||++++.
T Consensus        18 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~d~~~~~~   94 (190)
T d1khta_          18 SQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD--RDQMRKMDPETQKRIQKMAGRKIAEMA-KESPVAVDTHSTVS   94 (190)
T ss_dssp             HHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSS--GGGGSSCCHHHHHHHHHHHHHHHHHHH-TTSCEEEECCSEEE
T ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCH
T ss_conf             999999998769986999568766999999876666--400115311056789999999999984-79969987843126


Q ss_pred             HHHH------HHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             9899------9998299997788853898999999847976798882001468999825754110578999399999999
Q 028770           77 SQAT------ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRL  150 (204)
Q Consensus        77 ~Qa~------~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl  150 (204)
                      .+..      .+......|+.+|+|+++++++..|+..+..                        ..|..+..+.+ ++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~------------------------~~~~~~~~~~~-~~~  149 (190)
T d1khta_          95 TPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDET------------------------RVRDLDTASTI-EQH  149 (190)
T ss_dssp             ETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSS------------------------CSSSCCCHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCC------------------------CCCCCCCHHHH-HHH
T ss_conf             78999876346666520345304431888999999987313------------------------46775338999-999


Q ss_pred             HHHHHHHHHHHHHHHC--CEEEEECCCCHHHHHHHHHHHH
Q ss_conf             9999979999998323--5667809999788999999999
Q 028770          151 KTHHHNVEAVLSLYED--VTVEVNGSVNKEDVFAQIDVAL  188 (204)
Q Consensus       151 ~~y~~~~~~i~~~y~~--~~~~IDa~~~~~~V~~~i~~~l  188 (204)
                      ..++.........+.+  .++.++++.++++++++|...|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         150 QFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             9999999999998629985999899999899999999975


No 19 
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=98.36  E-value=9.9e-07  Score=54.74  Aligned_cols=140  Identities=16%  Similarity=0.015  Sum_probs=80.4

Q ss_pred             HHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHCCCCCCCCCEEEECCCCC
Q ss_conf             00464719941078899999998299459999999883999799999-------99999986399999985788466899
Q 028770            3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV-------VTMVKERLSQPDSQENGWLLDGYPRS   75 (204)
Q Consensus         3 ~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i-------~~ll~~~l~~~~~~~~G~vldGfPrt   75 (204)
                      ..||+++|+.+++.+++.......          ....+.....+..       ...+...+.     ....+..+++..
T Consensus        24 ~~La~~l~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~   88 (171)
T d1knqa_          24 SEVAHQLHAAFLDGDFLHPRRNIE----------KMASGEPLNDDDRKPWLQALNDAAFAMQR-----TNKVSLIVCSAL   88 (171)
T ss_dssp             HHHHHHHTCEEEEGGGGCCHHHHH----------HHHTTCCCCHHHHHHHHHHHHHHHHHHHH-----HCSEEEEECCCC
T ss_pred             HHHHHHHCCCEECHHHHHHHHHHH----------HHCCCCCEEHHHHHHHHHHHHHHHHHHHH-----CCCCEEEECCCH
T ss_conf             999998697831036645998853----------00247630011347789999999999872-----467468623613


Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99899999829999778885389899999984797679888200146899982575411057899939999999999999
Q 028770           76 LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH  155 (204)
Q Consensus        76 ~~Qa~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~  155 (204)
                      ..+...+......+..+|+|+||.+++.+|+..|..+                           ...++.+..++..|..
T Consensus        89 ~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~---------------------------~~~~~~~~~~~~~~e~  141 (171)
T d1knqa_          89 KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH---------------------------FFKTQMLVTQFETLQE  141 (171)
T ss_dssp             SHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTC---------------------------CCCHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCC---------------------------CCCHHHHHHHHHHHHC
T ss_conf             8888999998278835986458889999999857488---------------------------8667888756887507


Q ss_pred             HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             7999999832356678099997889999999999
Q 028770          156 NVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALT  189 (204)
Q Consensus       156 ~~~~i~~~y~~~~~~IDa~~~~~~V~~~i~~~l~  189 (204)
                         +  .+....++.||+++++++|.++|...|.
T Consensus       142 ---~--~~~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         142 ---P--GADETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             ---C--CTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ---C--CCCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf             ---7--7554898999498999999999999965


No 20 
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=98.33  E-value=3.5e-08  Score=62.87  Aligned_cols=48  Identities=10%  Similarity=0.077  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCEEEEECC-CCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999997999999832356678099-9978899999999999776
Q 028770          144 EKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTNLLE  193 (204)
Q Consensus       144 e~i~~rl~~y~~~~~~i~~~y~~~~~~IDa~-~~~~~V~~~i~~~l~~~~~  193 (204)
                      +....++..|.....|+...+  ..+.||++ .++++|+++|...|...+.
T Consensus       175 ~~~~~~~~d~~~~~~pl~~~~--~~~~Id~s~~s~eeV~~~I~~~I~~Kl~  223 (225)
T d1ckea_         175 EIKERDDRDRNRAVAPLVPAA--DALVLDSTTLSIEQVIEKALQYARQKLA  223 (225)
T ss_dssp             HHC-------------CCCCT--TCEEEETTTSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCCCCCCCCC--CEEEEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf             999878876223457771469--9799989899999999999999999977


No 21 
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=98.31  E-value=1.7e-06  Score=53.48  Aligned_cols=147  Identities=15%  Similarity=0.133  Sum_probs=86.8

Q ss_pred             CHHHHHHHC-CCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf             000464719-9410788999999982994599999998839997999999999998639999998578846689999899
Q 028770            2 KSSSYMQYG-LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT   80 (204)
Q Consensus         2 ~~~~a~~~g-~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~   80 (204)
                      +..||++|+ +.+++.+++..........       ....+..++.+.....+.+.+........++++++++++.-+. 
T Consensus        22 ~~~La~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-   93 (174)
T d1y63a_          22 AEMIAAELDGFQHLEVGKLVKENHFYTEY-------DTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPE-   93 (174)
T ss_dssp             HHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHHHTSSSEEEEECSCCTTSCG-
T ss_pred             HHHHHHHHCCCCEEEHHHHHHHHHHHHHH-------HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-
T ss_conf             99999985899087479988887643567-------7762354207999999999998543110354354899999997-


Q ss_pred             HHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99982999977888538989999998479767988820014689998257541105789993999999999999979999
Q 028770           81 ALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV  160 (204)
Q Consensus        81 ~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i  160 (204)
                            ..++.+|+|+||.+++.+|+..|....                   .+.    .   +  ......+.......
T Consensus        94 ------~~~~~vI~L~~~~e~l~~Rl~~R~~~~-------------------~~~----~---~--~~~~e~~~~~~~~~  139 (174)
T d1y63a_          94 ------RWFHMVVVLHTSTEVLFERLTKRQYSE-------------------AKR----A---E--NMEAEIQCICEEEA  139 (174)
T ss_dssp             ------GGCSEEEEEECCHHHHHHHHHHTTCCH-------------------HHH----H---H--HHHHHHTTHHHHHH
T ss_pred             ------HCCCEEEEEECCHHHHHHHHHHCCCCC-------------------CCC----C---C--CHHHHHHHHHHHHH
T ss_conf             ------068658999789999999998279862-------------------120----0---0--12566666658988


Q ss_pred             HHHHHCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             998323566780999978899999999999
Q 028770          161 LSLYEDVTVEVNGSVNKEDVFAQIDVALTN  190 (204)
Q Consensus       161 ~~~y~~~~~~IDa~~~~~~V~~~i~~~l~~  190 (204)
                      .+.|...++....+.+++++.+.|..++..
T Consensus       140 ~~~~~~~~~i~~~~~t~ee~~~~V~~I~~~  169 (174)
T d1y63a_         140 RDAYEDDIVLVRENDTLEQMAATVEEIRER  169 (174)
T ss_dssp             HHHSCGGGEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             886168779999989999999999999999


No 22 
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=98.29  E-value=3.1e-06  Score=51.97  Aligned_cols=158  Identities=15%  Similarity=0.103  Sum_probs=91.4

Q ss_pred             HHHHHHH-----CCCEECHHHHHHHHHHCCCHHH--HHHHHH-HHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf             0046471-----9941078899999998299459--999999-8839997999999999998639999998578846689
Q 028770            3 SSSYMQY-----GLVHIAAGDLLRAEIAAGSENG--KRAKEH-MEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPR   74 (204)
Q Consensus         3 ~~~a~~~-----g~~~Is~~~llr~~i~~~t~~g--~~i~~~-l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPr   74 (204)
                      ..||+.+     .+++++.++..+.....+....  ...... .......+.. ....+.......  ...++++|+++.
T Consensus        19 ~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~i~~~~~~   95 (194)
T d1nksa_          19 AKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQID-AAKGIAEEARAG--GEGYLFIDTHAV   95 (194)
T ss_dssp             HHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHT--CSSEEEEEECSE
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCHHH-HHHHHHHHHHHH--CCCCEEEECCCC
T ss_conf             99999998769988999789842677777775401220453303311468999-999999999970--799579980470


Q ss_pred             CHHHH-------HHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHH
Q ss_conf             99989-------99998299997788853898999999847976798882001468999825754110578999399999
Q 028770           75 SLSQA-------TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVK  147 (204)
Q Consensus        75 t~~Qa-------~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~  147 (204)
                      +..+.       ..+.. ...|+.+++|++|.+++.+|+..|...                        .|.+...+.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~~~~~~R~~~r~~~------------------------~r~~~~~~~~~  150 (194)
T d1nksa_          96 IRTPSGYLPGLPSYVIT-EINPSVIFLLEADPKIILSRQKRDTTR------------------------NRNDYSDESVI  150 (194)
T ss_dssp             EEETTEEEESSCHHHHH-HHCCSEEEEEECCHHHHHHHHHHCTTT------------------------CCCCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHCCCCCEEEECCHHHHHHHHHHHHHC------------------------CCCCCHHHHHH
T ss_conf             27777777767888776-502343157866999999999876403------------------------55532089999


Q ss_pred             HHHHHHHHHHHHHHHHHH-CC-EEEEECCCCHHHHHHHHHHHH
Q ss_conf             999999997999999832-35-667809999788999999999
Q 028770          148 LRLKTHHHNVEAVLSLYE-DV-TVEVNGSVNKEDVFAQIDVAL  188 (204)
Q Consensus       148 ~rl~~y~~~~~~i~~~y~-~~-~~~IDa~~~~~~V~~~i~~~l  188 (204)
                      ++...+..........+. .. ++.++++.+++++.++|...|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         151 LETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             9999998739998999719984999999999999999999985


No 23 
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.90  E-value=1.9e-05  Score=47.52  Aligned_cols=77  Identities=17%  Similarity=0.158  Sum_probs=47.3

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             999977888538989999998479767988820014689998257541105789993999999999-9999799999983
Q 028770           86 GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK-THHHNVEAVLSLY  164 (204)
Q Consensus        86 ~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~-~y~~~~~~i~~~y  164 (204)
                      ...||++|+|++|.+++.+|+..|.......                  -..+.+-+. ...+++. .|.+..   .+.+
T Consensus       130 ~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~------------------~~d~~e~~~-~y~~~~~~~Y~~~~---~~~~  187 (208)
T d1gsia_         130 LPKPDWQVLLAVSAELAGERSRGRAQRDPGR------------------ARDNYERDA-ELQQRTGAVYAELA---AQGW  187 (208)
T ss_dssp             CCCCSEEEEECCCHHHHHHHHHHHHHHCTTC------------------CCCTTTTCH-HHHHHHHHHHHHHH---HHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCCC------------------CCCCHHHHH-HHHHHHHHHHHHHH---HHCC
T ss_conf             4688536776356789999987531000012------------------456006579-99999999999999---7267


Q ss_pred             HCCEEEEECCCCHHHHHHHH
Q ss_conf             23566780999978899999
Q 028770          165 EDVTVEVNGSVNKEDVFAQI  184 (204)
Q Consensus       165 ~~~~~~IDa~~~~~~V~~~i  184 (204)
                      ...+++|||++++++|.++|
T Consensus       188 ~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         188 GGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             TSEEEEECTTCCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHH
T ss_conf             99889982999999999964


No 24 
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.77  E-value=3.7e-05  Score=45.93  Aligned_cols=83  Identities=14%  Similarity=0.129  Sum_probs=51.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH-HHHHHHHHHHHH--
Q ss_conf             99977888538989999998479767988820014689998257541105789993999999999-999979999998--
Q 028770           87 FQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLK-THHHNVEAVLSL--  163 (204)
Q Consensus        87 ~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~-~y~~~~~~i~~~--  163 (204)
                      ..||++|+|++|.+++.+|+..|....                      ..  ....+ ...++. .|.+........  
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r~~~~----------------------e~--~~~~~-yl~~l~~~y~~~~~~~~~~~~  205 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLRGRNE----------------------EQ--GIPLE-YLEKLHYKHESWLLHRTLKTN  205 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHHCCGG----------------------GT--TCCHH-HHHHHHHHHHHHHTTCCCCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCHH----------------------HH--CCCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             787655431458899999998511015----------------------52--28999-999999999999987465556


Q ss_pred             ---H-HCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             ---3-235667809999788999999999997763
Q 028770          164 ---Y-EDVTVEVNGSVNKEDVFAQIDVALTNLLEQ  194 (204)
Q Consensus       164 ---y-~~~~~~IDa~~~~~~V~~~i~~~l~~~~~~  194 (204)
                         + ..++++|||++++++|.+++...|...+.+
T Consensus       206 ~~~~~~~~~~~ID~~~~ie~v~~~i~~~i~~~l~~  240 (241)
T d1p5zb_         206 FDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLST  240 (241)
T ss_dssp             CGGGGGSCEEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf             76437898899989999899999999999999855


No 25 
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=97.77  E-value=3.7e-05  Score=45.92  Aligned_cols=141  Identities=16%  Similarity=0.209  Sum_probs=82.8

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf             00046471994107889999999829945999999988399979999999999986399999985788466899998999
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA   81 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~   81 (204)
                      |..||++||+++++.++.++..-......      ....+..+..+.+...+.....     ..+..++++++....   
T Consensus        21 a~~La~~l~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---   86 (173)
T d1rkba_          21 GKELASKSGLKYINVGDLAREEQLYDGYD------EEYDCPILDEDRVVDELDNQMR-----EGGVIVDYHGCDFFP---   86 (173)
T ss_dssp             HHHHHHHHCCEEEEHHHHHHHTTCBCCCC------SSSSCCCBCHHHHHHHHHHHHH-----HCCEEEECSCCTTSC---
T ss_pred             HHHHHHHHCCCEEECHHHHHHHCCCCCHH------HHHHHHHHHHHHHHHHHHHHHH-----CCCCCCCHHHHHHHH---
T ss_conf             99999997995895168898840020025------7740016899999998655520-----478445355899988---


Q ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99829999778885389899999984797679888200146899982575411057899939999999999999799999
Q 028770           82 LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL  161 (204)
Q Consensus        82 l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~  161 (204)
                        .  -.+..+|+|+|+.+++.+|+..|....                   .+         ..-..+...+........
T Consensus        87 --~--~~~~~~i~l~~~~~~~~~Rl~~r~~~~-------------------~~---------~~~~~~~~~~~~~~~e~~  134 (173)
T d1rkba_          87 --E--RWFHIVFVLRTDTNVLYERLETRGYNE-------------------KK---------LTDNIQCEIFQVLYEEAT  134 (173)
T ss_dssp             --G--GGCSEEEEEECCHHHHHHHHHHTTCCH-------------------HH---------HHHHHHHHHTTHHHHHHH
T ss_pred             --H--HCCCCCCEECCCHHHHHHHHHHCCCCC-------------------CC---------CCCCCHHHHHHHHHHHHH
T ss_conf             --8--527876244079999999998557774-------------------23---------434314566777788888


Q ss_pred             HHHHC-CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             98323-56678099997889999999999
Q 028770          162 SLYED-VTVEVNGSVNKEDVFAQIDVALT  189 (204)
Q Consensus       162 ~~y~~-~~~~IDa~~~~~~V~~~i~~~l~  189 (204)
                      .+|.. ..+.+|.+ +++++.+.+..++.
T Consensus       135 ~~~~~~~~i~~~~~-~~~~~~~~i~~Ii~  162 (173)
T d1rkba_         135 ASYKEEIVHQLPSN-KPEELENNVDQILK  162 (173)
T ss_dssp             HHSCGGGEEEEECS-SHHHHHHHHHHHHH
T ss_pred             HHHHHCCEEEECCC-CHHHHHHHHHHHHH
T ss_conf             77532657998997-97999999999999


No 26 
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=97.55  E-value=9.6e-05  Score=43.63  Aligned_cols=146  Identities=17%  Similarity=0.079  Sum_probs=83.4

Q ss_pred             HHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf             00464719941078899999998299459999999883999799999999999863999999857884668999989999
Q 028770            3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL   82 (204)
Q Consensus         3 ~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~l   82 (204)
                      ..||++++..+++.+|.++..+..+..........    .......+..++...+..    ..++++|++..+..+...+
T Consensus        20 ~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~iid~~~~~~~~~~~~   91 (176)
T d2bdta1          20 KRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDEL----LALTWKNITDLTVNFLLA----QNDVVLDYIAFPDEAEALA   91 (176)
T ss_dssp             HHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHH----HHHHHHHHHHHHHHHHHT----TCEEEEESCCCHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEHHHHHHHHHCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCHHHHHHH
T ss_conf             99999809988983078899874566323677888----889999999999999862----7885224443528899999


Q ss_pred             H----HCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9----829999778885389899999984797679888200146899982575411057899939999999999999799
Q 028770           83 K----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE  158 (204)
Q Consensus        83 ~----~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~  158 (204)
                      .    .....+..+++|.++.+++.+|+..|..+...+                       .   +    .+..|.    
T Consensus        92 ~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~-----------------------~---~----~~~~~~----  137 (176)
T d2bdta1          92 QTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMG-----------------------E---R----CLELVE----  137 (176)
T ss_dssp             HHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----C-----------------------G---G----GGHHHH----
T ss_pred             HHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHH-----------------------H---H----HHHHHH----
T ss_conf             99998538986278742532799999998578860120-----------------------8---8----999999----


Q ss_pred             HHHHHHHCCEEEEECC-CCHHHHHHHHHHHHHH
Q ss_conf             9999832356678099-9978899999999999
Q 028770          159 AVLSLYEDVTVEVNGS-VNKEDVFAQIDVALTN  190 (204)
Q Consensus       159 ~i~~~y~~~~~~IDa~-~~~~~V~~~i~~~l~~  190 (204)
                      ...+......+.||.+ .+++++.+.|..++.+
T Consensus       138 ~~~~~~~~~~~~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         138 EFESKGIDERYFYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             HHHHTTCCTTSEEECSSSCGGGHHHHHHHHHHC
T ss_pred             HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf             887279987299989898999999999999814


No 27 
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=97.51  E-value=4.2e-05  Score=45.62  Aligned_cols=142  Identities=13%  Similarity=0.093  Sum_probs=69.9

Q ss_pred             HHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf             00464719941078899999998299459999999883999799999999999863999999857884668999989999
Q 028770            3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL   82 (204)
Q Consensus         3 ~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~l   82 (204)
                      ..||+++|++++++++++++..  +..+    ...+.......-...-..+...+...    ...|+.. +.+......+
T Consensus        18 k~La~~l~~~~~d~d~~ie~~~--g~~i----~~~~~~~g~~~~r~~e~~v~~~l~~~----~~~v~~~-~g~~~~~~~l   86 (161)
T d1viaa_          18 RALAKDLDLVFLDSDFLIEQKF--NQKV----SEIFEQKRENFFREQEQKMADFFSSC----EKACIAT-GGGFVNVSNL   86 (161)
T ss_dssp             HHHHHHHTCEEEEHHHHHHHHH--TSCH----HHHHHHHCHHHHHHHHHHHHHHHTTC----CSEEEEC-CTTGGGSTTG
T ss_pred             HHHHHHHCCCEEECCCHHHHHH--HHHH----HHHHHHHHHCCCHHHHHHHCHHHHHC----CCCCCCC-CCCHHHHHHH
T ss_conf             9999983998783673045677--6410----36877630101001221200000100----2201133-4452138899


Q ss_pred             HHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98299997788853898999999847976798882001468999825754110578999399999999999997999999
Q 028770           83 KKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS  162 (204)
Q Consensus        83 ~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~~  162 (204)
                      .    ....+|+|++|.+++.+|+..+..+.          .|         +....+...+.+..|...|.+       
T Consensus        87 ~----~~~~vI~L~~s~~~l~~Rl~~~~~~~----------Rp---------~~~~~~~~~~l~~~r~~~Y~~-------  136 (161)
T d1viaa_          87 E----KAGFCIYLKADFEYLKKRLDKDEISK----------RP---------LFYDEIKAKKLYNERLSKYEQ-------  136 (161)
T ss_dssp             G----GGCEEEEEECCHHHHTTCCCGGGTTT----------SC---------TTCCHHHHHHHHHHHHHHHHH-------
T ss_pred             H----HCCEEEEECCCHHHHHHHHCCCCCCC----------CC---------CCCCCHHHHHHHHHHHHHHHH-------
T ss_conf             7----18869996440679999872555555----------43---------346816899999999999986-------


Q ss_pred             HHHCCEEEEECC-CCHHHHHHHHHHHH
Q ss_conf             832356678099-99788999999999
Q 028770          163 LYEDVTVEVNGS-VNKEDVFAQIDVAL  188 (204)
Q Consensus       163 ~y~~~~~~IDa~-~~~~~V~~~i~~~l  188 (204)
                       + .. +.||.+ .+++++.+.|...|
T Consensus       137 -~-ad-~~Idt~~~s~eei~~~I~~~i  160 (161)
T d1viaa_         137 -K-AN-FILNIENKNIDELLSEIKKVI  160 (161)
T ss_dssp             -H-CS-EEEECTTCCHHHHHHHHHHHH
T ss_pred             -H-CC-EEEECCCCCHHHHHHHHHHHH
T ss_conf             -5-99-999899999999999999986


No 28 
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=97.47  E-value=1.9e-05  Score=47.53  Aligned_cols=31  Identities=84%  Similarity=1.410  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCEECCCCCCCCCHHHHHHCCCC
Q ss_conf             7976798882001468999825754110578
Q 028770          108 GRRLDPVTGKIYHVKYSPPETDEIAARLTKR  138 (204)
Q Consensus       108 ~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r  138 (204)
                      +|+.||.||++||+.|+||+.+++.+||.+|
T Consensus         1 GRR~DP~TG~iYH~~f~ppp~~ei~~RLvqr   31 (31)
T d1zaka2           1 GRRLDPVTGKIYHLKYSPPENEEIASRLTQR   31 (31)
T ss_dssp             TEEECTTTCCEEESSSSCCCSSGGGGGCBCC
T ss_pred             CCCCCCCCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf             9767887776867752798987999887439


No 29 
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=97.31  E-value=0.0007  Score=38.81  Aligned_cols=99  Identities=16%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             HHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHH---
Q ss_conf             71994107889999999829945999999988399979999999999986399999985788466899998999998---
Q 028770            8 QYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK---   84 (204)
Q Consensus         8 ~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~l~~---   84 (204)
                      ..|+.+++.+++.+.........+...... .  ..........++...+..... ....|+|+...+......+..   
T Consensus        26 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~~~vi~d~~~~~~~~~~~~~~~~~  101 (152)
T d1ly1a_          26 NPGFYNINRDDYRQSIMAHEERDEYKYTKK-K--EGIVTGMQFDTAKSILYGGDS-VKGVIISDTNLNPERRLAWETFAK  101 (152)
T ss_dssp             STTEEEECHHHHHHHHTTSCCGGGCCCCHH-H--HHHHHHHHHHHHHHHHTSCSS-CCEEEECSCCCSHHHHHHHHHHHH
T ss_pred             CCCCEEECHHHHHHHHHCCCCHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             799799603999999841011001243255-5--688999999999999875224-777500466689999999998653


Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHCCC
Q ss_conf             29999778885389899999984797
Q 028770           85 YGFQPDLFILLEVPEDTLVERVVGRR  110 (204)
Q Consensus        85 ~~~~pd~vI~L~~~~~~~~~R~~~r~  110 (204)
                      ....+..+|+|++|.+++.+|...|.
T Consensus       102 ~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (152)
T d1ly1a_         102 EYGWKVEHKVFDVPWTELVKRNSKRG  127 (152)
T ss_dssp             HHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred             HHCCCHHHHHCCCCHHHHHHHHHCCC
T ss_conf             20100455535998999999997458


No 30 
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.27  E-value=3.5e-05  Score=46.09  Aligned_cols=34  Identities=38%  Similarity=0.763  Sum_probs=29.8

Q ss_pred             CCCCCCCCCCEECCCCCCCCCHHHH----HHCCCCCCC
Q ss_conf             7976798882001468999825754----110578999
Q 028770          108 GRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDD  141 (204)
Q Consensus       108 ~r~~~~~~g~~y~~~~~pp~~~~~~----~rl~~r~dd  141 (204)
                      +|++|+.||++||..|+||+.++++    +.|.+|.||
T Consensus         1 GRr~C~~cG~~Yh~~~~ppk~~g~CD~cg~~L~qR~DD   38 (38)
T d1akya2           1 GRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDD   38 (38)
T ss_dssp             TEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             96688474664544235867678457889985626998


No 31 
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.11  E-value=0.0017  Score=36.70  Aligned_cols=144  Identities=18%  Similarity=0.172  Sum_probs=73.6

Q ss_pred             HHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf             00464719941078899999998299459999999883999799999999999863999999857884668999989999
Q 028770            3 SSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL   82 (204)
Q Consensus         3 ~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~l   82 (204)
                      ..+|+++|+++++.++.+.+..  +..+.+.....   |..--.+.-.+.+..-+.+    ..+.+..|-+.........
T Consensus        19 ~~La~~l~~~fiD~D~~ie~~~--g~~i~~~~~~~---g~~~~r~~e~~~~~~~~~~----~~~vi~~gg~~~~~~~~~~   89 (165)
T d2iyva1          19 RRLAKALGVGLLDTDVAIEQRT--GRSIADIFATD---GEQEFRRIEEDVVRAALAD----HDGVLSLGGGAVTSPGVRA   89 (165)
T ss_dssp             HHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHHHH---CHHHHHHHHHHHHHHHHHH----CCSEEECCTTGGGSHHHHH
T ss_pred             HHHHHHHCCCEEEECCCHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCC
T ss_conf             9999984998696022025556--42322435444---2788889876222100124----5643343310011221111


Q ss_pred             HHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98299997788853898999999847976798882001468999825754110578999399999999999997999999
Q 028770           83 KKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLS  162 (204)
Q Consensus        83 ~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~~  162 (204)
                      .   .....+|+|.++.+++.+|+..+...|.                     . ...+..+.+..-+.+       -..
T Consensus        90 ~---l~~~~~I~L~~~~~~~~~R~~~~~~Rpl---------------------l-~~~~~~e~~~~l~~e-------R~~  137 (165)
T d2iyva1          90 A---LAGHTVVYLEISAAEGVRRTGGNTVRPL---------------------L-AGPDRAEKYRALMAK-------RAP  137 (165)
T ss_dssp             H---HTTSCEEEEECCHHHHHHHTTCCCCCSS---------------------T-TSCCHHHHHHHHHHH-------HHH
T ss_pred             C---CCCCCEEEEECCCHHHHHCCCCCCCCHH---------------------C-CCCCHHHHHHHHHHH-------HHH
T ss_conf             1---2444201101010245640434666410---------------------0-384489999999999-------999


Q ss_pred             HHHC-CEEEEECC-CCHHHHHHHHHHH
Q ss_conf             8323-56678099-9978899999999
Q 028770          163 LYED-VTVEVNGS-VNKEDVFAQIDVA  187 (204)
Q Consensus       163 ~y~~-~~~~IDa~-~~~~~V~~~i~~~  187 (204)
                      +|.+ --++||.+ .+++++.+.|...
T Consensus       138 ~Y~~~ad~~Idt~~~s~~ei~~~Ii~~  164 (165)
T d2iyva1         138 LYRRVATMRVDTNRRNPGAVVRHILSR  164 (165)
T ss_dssp             HHHHHCSEEEECSSSCHHHHHHHHHTT
T ss_pred             HHHHHCCEEEECCCCCHHHHHHHHHHC
T ss_conf             999659999989999999999999962


No 32 
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.87  E-value=0.0011  Score=37.77  Aligned_cols=78  Identities=9%  Similarity=0.010  Sum_probs=44.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH-HHHHH--
Q ss_conf             999778885389899999984797679888200146899982575411057899939999999999999799-99998--
Q 028770           87 FQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE-AVLSL--  163 (204)
Q Consensus        87 ~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~-~i~~~--  163 (204)
                      ..||++|+|+++.+++.+|+..|.-...                        .... ....+++....+.+. .....  
T Consensus       148 ~~pdl~i~Ld~~~~~~~~Ri~~r~r~~E------------------------~~i~-~~yl~~l~~~Y~~~~~~~~~~~~  202 (241)
T d2ocpa1         148 ITLHGFIYLQASPQVCLKRLYQRAREEE------------------------KGIE-LAYLEQLHGQHEAWLIHKTTKLH  202 (241)
T ss_dssp             HCCCEEEEEECCHHHHHHHHHHSCCTTT------------------------TTCC-HHHHHHHHHHHHHHHTSCCSCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHCCCCHHH------------------------HCCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5445578833789999999860121244------------------------1289-99999999999999986044555


Q ss_pred             ----HHCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             ----32356678099997889999999999
Q 028770          164 ----YEDVTVEVNGSVNKEDVFAQIDVALT  189 (204)
Q Consensus       164 ----y~~~~~~IDa~~~~~~V~~~i~~~l~  189 (204)
                          ...+++.|||+++..++..++..++.
T Consensus       203 ~~~~~~~~~~iID~~~d~~~~~~~~~~i~~  232 (241)
T d2ocpa1         203 FEALMNIPVLVLDVNDDFSEEVTKQEDLMR  232 (241)
T ss_dssp             CTTGGGCCEEEEECCSCTTTCHHHHHHHHH
T ss_pred             HHHCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             765279987999899865662999999999


No 33 
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}
Probab=96.87  E-value=0.011  Score=32.16  Aligned_cols=149  Identities=15%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             HHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH---------------------------HHHHHHHHH
Q ss_conf             04647199410788999999982994599999998839997999---------------------------999999998
Q 028770            4 SSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE---------------------------IVVTMVKER   56 (204)
Q Consensus         4 ~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde---------------------------~i~~ll~~~   56 (204)
                      ++.+++|+++++++++.++.+..+++....+.+..-.....++.                           .+..-+...
T Consensus        20 ~~l~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~~~l~~i~hp~v~~~~~~~   99 (205)
T d1jjva_          20 NLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQK   99 (205)
T ss_dssp             HHHHTTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEECHHHHHHHHHCCCHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99998799399746999999861130689999850331104788652898864410013566676403678999999999


Q ss_pred             HCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCC
Q ss_conf             63999999857884668999989999982999977888538989999998479767988820014689998257541105
Q 028770           57 LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLT  136 (204)
Q Consensus        57 l~~~~~~~~G~vldGfPrt~~Qa~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~  136 (204)
                      +...   ...+++-.-|--.+ .    .+....+.+|+++||.++..+|+..|.                          
T Consensus       100 ~~~~---~~~~vv~e~~ll~e-~----~~~~~~d~ii~v~~~~~~r~~R~~~R~--------------------------  145 (205)
T d1jjva_         100 LAEQ---TAPYTLFVVPLLIE-N----KLTALCDRILVVDVSPQTQLARSAQRD--------------------------  145 (205)
T ss_dssp             HHTC---CSSEEEEECTTTTT-T----TCGGGCSEEEEEECCHHHHHHHHC-----------------------------
T ss_pred             HHHC---CCCEEEEEECCCCC-C----CHHHHHHHEEEECCHHHHHHHHHHHCC--------------------------
T ss_conf             8635---69869997122100-0----002221120012112889999998658--------------------------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             789993999999999999979999998323566780999978899999999999776
Q 028770          137 KRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLE  193 (204)
Q Consensus       137 ~r~dd~~e~i~~rl~~y~~~~~~i~~~y~~~~~~IDa~~~~~~V~~~i~~~l~~~~~  193 (204)
                         +.+.+.+..|+........  ...+.+  ..|+-+.+.++..+++...+.....
T Consensus       146 ---~~s~e~~~~~~~~Q~~~~~--k~~~aD--~vI~N~~~l~~~~~~l~~~i~~i~~  195 (205)
T d1jjva_         146 ---NNNFEQIQRIMNSQVSQQE--RLKWAD--DVINNDAELAQNLPHLQQKVLELHQ  195 (205)
T ss_dssp             -----CHHHHHHHHHHSCCHHH--HHHHCS--EEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHCCCHHH--HHHHCC--EEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             ---9609999999994799899--998599--9998999759999999999999999


No 34 
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=96.75  E-value=0.00012  Score=43.12  Aligned_cols=33  Identities=33%  Similarity=0.736  Sum_probs=27.1

Q ss_pred             CCCCCCCCCCEECCCCCCCCCHHHHH----HCCCCCC
Q ss_conf             79767988820014689998257541----1057899
Q 028770          108 GRRLDPVTGKIYHVKYSPPETDEIAA----RLTKRFD  140 (204)
Q Consensus       108 ~r~~~~~~g~~y~~~~~pp~~~~~~~----rl~~r~d  140 (204)
                      .|++|+.||++||+.|+||+.+++++    .|.+|.|
T Consensus         1 sR~vc~~cG~~Yh~~~~pPk~~g~CD~cg~~L~qR~D   37 (37)
T d2ak3a2           1 ARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQRED   37 (37)
T ss_dssp             CEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred             CCEEECCCCCHHHHCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             9505177587021045774466886477982771689


No 35 
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=96.32  E-value=0.00039  Score=40.26  Aligned_cols=26  Identities=38%  Similarity=0.930  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCEECCCCCCCCCHHHHH
Q ss_conf             79767988820014689998257541
Q 028770          108 GRRLDPVTGKIYHVKYSPPETDEIAA  133 (204)
Q Consensus       108 ~r~~~~~~g~~y~~~~~pp~~~~~~~  133 (204)
                      +|++|+.||++||..|+||+.+++++
T Consensus         1 GRr~c~~cG~~Yh~~~~PPk~~g~CD   26 (35)
T d1e4va2           1 GRRVHAPSGRVYHVKFNPPKVEGKDD   26 (35)
T ss_dssp             TEEEETTTTEEEETTTBCCSSTTBCT
T ss_pred             CCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             96677686772320047644588126


No 36 
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=95.87  E-value=0.00086  Score=38.32  Aligned_cols=27  Identities=30%  Similarity=0.689  Sum_probs=23.8

Q ss_pred             CCCCCCCCCCEECCCCCCCCCHHHHHH
Q ss_conf             797679888200146899982575411
Q 028770          108 GRRLDPVTGKIYHVKYSPPETDEIAAR  134 (204)
Q Consensus       108 ~r~~~~~~g~~y~~~~~pp~~~~~~~r  134 (204)
                      +|++|+.||++||..|+||+.+++++.
T Consensus         1 GRr~C~~CG~~Yh~~~~pPk~~g~CD~   27 (35)
T d1zina2           1 GRRICRNCGATYHLIFHPPAKPGVCDK   27 (35)
T ss_dssp             TEEEETTTCCEEETTTBCCSSTTBCTT
T ss_pred             CCCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf             965886767521265679887884779


No 37 
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=95.81  E-value=0.00099  Score=37.97  Aligned_cols=27  Identities=33%  Similarity=0.764  Sum_probs=23.8

Q ss_pred             CCCCCCCCCCEECCCCCCCCCHHHHHH
Q ss_conf             797679888200146899982575411
Q 028770          108 GRRLDPVTGKIYHVKYSPPETDEIAAR  134 (204)
Q Consensus       108 ~r~~~~~~g~~y~~~~~pp~~~~~~~r  134 (204)
                      +|++|+.||++||..|+||+.+++++.
T Consensus         1 GR~~C~~CG~~Yh~~~~pPk~~g~CD~   27 (35)
T d1s3ga2           1 GRRICKVCGTSYHLLFNPPQVEGKCDK   27 (35)
T ss_dssp             SEEEETTTCCEEETTTBCCSBTTBCTT
T ss_pred             CCCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf             966885747511456679888883679


No 38 
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.23  E-value=0.052  Score=28.36  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             HHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             04647199410788999999982994599999998839997999999999998639999998578846689999899999
Q 028770            4 SSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK   83 (204)
Q Consensus         4 ~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt~~Qa~~l~   83 (204)
                      ++++..++.+||.+++....                        -+.+.++..+..    ...+|+|+--.+..+-..+.
T Consensus        33 ~l~~~~~~~~i~~D~~~~~~------------------------~~~~~~~~~l~~----g~~vIiD~t~~~~~~R~~~~   84 (172)
T d1yj5a2          33 EHLVSAGYVHVNRDTLGSWQ------------------------RCVSSCQAALRQ----GKRVVIDNTNPDVPSRARYI   84 (172)
T ss_dssp             HHTGGGTCEEEEHHHHCSHH------------------------HHHHHHHHHHHT----TCCEEEESCCCSHHHHHHHH
T ss_pred             HHHHHCCCEEECHHHHHHHH------------------------HHHHHHHHHHHC----CCCCEEECCCCCHHHHHHHH
T ss_conf             99976597897607777888------------------------999999999977----99955517679999999999


Q ss_pred             ----HCCCCCCEEEEECCCHHHHHHHHHCCCCC
Q ss_conf             ----82999977888538989999998479767
Q 028770           84 ----KYGFQPDLFILLEVPEDTLVERVVGRRLD  112 (204)
Q Consensus        84 ----~~~~~pd~vI~L~~~~~~~~~R~~~r~~~  112 (204)
                          +.+. +-.+++|++|.+++.+|...|..+
T Consensus        85 ~~a~~~~~-~~~~v~l~~~~e~~~~Rn~~R~~~  116 (172)
T d1yj5a2          85 QCAKDAGV-PCRCFNFCATIEQARHNNRFREMT  116 (172)
T ss_dssp             HHHHHHTC-CEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCC-CEEEEEECCCHHHHHHHHHHHCCC
T ss_conf             99985588-879999489999999999974546


No 39 
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=95.04  E-value=0.0032  Score=35.12  Aligned_cols=22  Identities=27%  Similarity=0.647  Sum_probs=19.2

Q ss_pred             CCCCCEECCCCCCCCCHHHHHH
Q ss_conf             9888200146899982575411
Q 028770          113 PVTGKIYHVKYSPPETDEIAAR  134 (204)
Q Consensus       113 ~~~g~~y~~~~~pp~~~~~~~r  134 (204)
                      |.||++||+.||||+.+++|+.
T Consensus         1 P~sG~~Yhv~f~PPk~~g~cD~   22 (30)
T d1ak2a2           1 PQSGRSYHEEFNPPKEPMKDDI   22 (30)
T ss_dssp             TTTCCEEBTTTBCCSSTTBCTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9987774564569898883678


No 40 
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=94.64  E-value=0.07  Score=27.64  Aligned_cols=142  Identities=16%  Similarity=0.086  Sum_probs=73.4

Q ss_pred             HHHHHHHCCCEECH-HHHHHHHHHCCC-----HH-HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
Q ss_conf             00464719941078-899999998299-----45-999999988399979999999999986399999985788466899
Q 028770            3 SSSYMQYGLVHIAA-GDLLRAEIAAGS-----EN-GKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRS   75 (204)
Q Consensus         3 ~~~a~~~g~~~Is~-~~llr~~i~~~t-----~~-g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPrt   75 (204)
                      ..+|+++|.+++++ +|.++..+....     .. ...-....        .....++...+..    ...+|+|+.++.
T Consensus        22 ~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----~~~vi~~~~~~~   89 (176)
T d1zp6a1          22 EALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIM--------QIAADVAGRYAKE----GYFVILDGVVRP   89 (176)
T ss_dssp             HHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHH--------HHHHHHHHHHHHT----SCEEEECSCCCT
T ss_pred             HHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHC----CCCEEECCCCCH
T ss_conf             9999995999799068999999843876556312145788899--------9899999999826----997586152428


Q ss_pred             HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99899999829999778885389899999984797679888200146899982575411057899939999999999999
Q 028770           76 LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH  155 (204)
Q Consensus        76 ~~Qa~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~  155 (204)
                      .. ...+... ..+..+++|.|+.+++.+|+..|....                          ....+.+......|. 
T Consensus        90 ~~-~~~~~~~-~~~~~~i~l~~~~e~~~~R~~~R~~~~--------------------------~~~~~~~~~~~~~~~-  140 (176)
T d1zp6a1          90 DW-LPAFTAL-ARPLHYIVLRTTAAEAIERCLDRGGDS--------------------------LSDPLVVADLHSQFA-  140 (176)
T ss_dssp             TT-THHHHTT-CSCEEEEEEECCHHHHHHHHHTTCTTS--------------------------CCCHHHHHHHHHHTT-
T ss_pred             HH-HHHHHHC-CCCCCCCCCCCCHHHHHHHHHHCCCCC--------------------------CCCHHHHHHHHHHHH-
T ss_conf             88-9999853-321235667899999999999379965--------------------------542426999999875-


Q ss_pred             HHHHHHHHHHCCEEEEE-CCCCHHHHHHHHHHHHHHH
Q ss_conf             79999998323566780-9999788999999999997
Q 028770          156 NVEAVLSLYEDVTVEVN-GSVNKEDVFAQIDVALTNL  191 (204)
Q Consensus       156 ~~~~i~~~y~~~~~~ID-a~~~~~~V~~~i~~~l~~~  191 (204)
                            ..+...-+.|| .+.+++++.+.|...+...
T Consensus       141 ------~~~~~~~~~idt~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         141 ------DLGAFEHHVLPVSGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             ------CCGGGGGGEEECTTCCTTTTTTTTHHHHHHT
T ss_pred             ------HCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             ------1065258798899999999999999999708


No 41 
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=94.16  E-value=0.043  Score=28.79  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHCCC
Q ss_conf             29999778885389899999984797
Q 028770           85 YGFQPDLFILLEVPEDTLVERVVGRR  110 (204)
Q Consensus        85 ~~~~pd~vI~L~~~~~~~~~R~~~r~  110 (204)
                      ....||++|+|++|++++++|+..|.
T Consensus       132 ~~~~pdl~i~Ld~~~~~~~~Ri~~R~  157 (197)
T d2vp4a1         132 IHVQADLIIYLRTSPEVAYERIRQRA  157 (197)
T ss_dssp             BCCCCSEEEEEECCHHHHHHHHHHHC
T ss_pred             CCCCCCHHHEEECCHHHHHHHHHHHC
T ss_conf             13222014202407899999999719


No 42 
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.13  E-value=0.12  Score=26.24  Aligned_cols=89  Identities=17%  Similarity=0.260  Sum_probs=56.6

Q ss_pred             CCEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHH
Q ss_conf             85788466899998999998299997788853898999999847976798882001468999825754110578999399
Q 028770           65 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEE  144 (204)
Q Consensus        65 ~G~vldGfPrt~~Qa~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e  144 (204)
                      +..|+++.|....++..+.  ...|..++++..+.+++.+|+..|.                             .++++
T Consensus        93 ~~~i~~~~~~~~~~lk~~~--~~~~~~i~~~~~~~e~l~~RL~~Rg-----------------------------~~~~~  141 (186)
T d1gkya_          93 KTCILDIDMQGVKSVKAIP--ELNARFLFIAPPSVEDLKKRLEGRG-----------------------------TETEE  141 (186)
T ss_dssp             SEEEEECCHHHHHHHHTCG--GGCCEEEEEECSCHHHHHHHHHHHS-----------------------------CSCHH
T ss_pred             CEEEECCHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHC-----------------------------CCHHH
T ss_conf             8698454088899999752--2365078704774999977777504-----------------------------52167


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCC--EEEEECCCCHHHHHHHHHHHHH
Q ss_conf             99999999999799999983235--6678099997889999999999
Q 028770          145 KVKLRLKTHHHNVEAVLSLYEDV--TVEVNGSVNKEDVFAQIDVALT  189 (204)
Q Consensus       145 ~i~~rl~~y~~~~~~i~~~y~~~--~~~IDa~~~~~~V~~~i~~~l~  189 (204)
                      .+.+|+..+.....   ..+...  ++.+|  .+.+...+++..+|.
T Consensus       142 ~I~~Rl~~~~~e~~---~~~~~~fd~vI~N--~dle~a~~~l~~iI~  183 (186)
T d1gkya_         142 SINKRLSAAQAELA---YAETGAHDKVIVN--DDLDKAYKELKDFIF  183 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHTTTCSSEEEEC--SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHCCCCEEEEC--CCHHHHHHHHHHHHH
T ss_conf             89999999999997---4153599789989--299999999999999


No 43 
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}
Probab=92.49  E-value=0.27  Score=24.35  Aligned_cols=151  Identities=12%  Similarity=0.153  Sum_probs=81.1

Q ss_pred             HHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHH-----CCCCCCHHHHHH------------------HHHHH----
Q ss_conf             046471994107889999999829945999999988-----399979999999------------------99998----
Q 028770            4 SSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-----KGQLVPDEIVVT------------------MVKER----   56 (204)
Q Consensus         4 ~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~-----~G~~vpde~i~~------------------ll~~~----   56 (204)
                      ++.+++|++.++++++.++.+..+++....+.+...     .+..+.-..+..                  ++.+.    
T Consensus        21 ~~l~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~~~Le~i~hp~v~~~~~~~  100 (208)
T d1vhta_          21 NAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQ  100 (208)
T ss_dssp             HHHHHTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998799199743999999841336789999876000124786520012466652138899999988689999999998


Q ss_pred             HCCCCCCCCCEEEECCCCCHHHHHHHHH-CCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHC
Q ss_conf             6399999985788466899998999998-299997788853898999999847976798882001468999825754110
Q 028770           57 LSQPDSQENGWLLDGYPRSLSQATALKK-YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARL  135 (204)
Q Consensus        57 l~~~~~~~~G~vldGfPrt~~Qa~~l~~-~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl  135 (204)
                      +...  ....+++++ |--      ++. .....+.+|++.||.++-.+|+..|..                        
T Consensus       101 ~~~~--~~~~~~~e~-~ll------~e~~~~~~~~~iI~V~a~~e~r~~R~~~R~~------------------------  147 (208)
T d1vhta_         101 IQQA--TSPYVLWVV-PLL------VENSLYKKANRVLVVDVSPETQLKRTMQRDD------------------------  147 (208)
T ss_dssp             HHHC--CSSEEEEEC-TTT------TTTTGGGGCSEEEEEECCHHHHHHHHHHHHT------------------------
T ss_pred             HHHH--HCCCCCEEE-EEC------CCCCCCCCCCEEEEEECCHHHHHHHHHHHHH------------------------
T ss_conf             7774--267753331-011------0245455688899996899999999987323------------------------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5789993999999999999979999998323566780999978899999999999776323
Q 028770          136 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNLLEQRK  196 (204)
Q Consensus       136 ~~r~dd~~e~i~~rl~~y~~~~~~i~~~y~~~~~~IDa~~~~~~V~~~i~~~l~~~~~~~~  196 (204)
                           -+.+.+..|+.........  ..+. . ..||-+.+++++..+|..++...+.-..
T Consensus       148 -----~~~~~~~~~~~~Q~~~~~k--~~~a-D-~vI~N~~~le~l~~~v~~l~~~~l~~~~  199 (208)
T d1vhta_         148 -----VTREHVEQILAAQATREAR--LAVA-D-DVIDNNGAPDAIASDVARLHAHYLQLAS  199 (208)
T ss_dssp             -----CCHHHHHHHHHHSCCHHHH--HHHC-S-EEEECSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHCCCHHHH--HHHC-C-EEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----3399999999957998999--9859-9-9998999999999999999999999999


No 44 
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=91.49  E-value=0.36  Score=23.68  Aligned_cols=146  Identities=14%  Similarity=0.065  Sum_probs=72.2

Q ss_pred             CHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCC--CHHHH
Q ss_conf             0004647199410788999999982994599999998839997999999999998639999998578846689--99989
Q 028770            2 KSSSYMQYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPR--SLSQA   79 (204)
Q Consensus         2 ~~~~a~~~g~~~Is~~~llr~~i~~~t~~g~~i~~~l~~G~~vpde~i~~ll~~~l~~~~~~~~G~vldGfPr--t~~Qa   79 (204)
                      +..||+++|+++++.+.....................      ...............   ....++..+.+.  .....
T Consensus        19 ak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   89 (169)
T d1kaga_          19 GRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEE------GFRDREEKVINELTE---KQGIVLATGGGSVKSRETR   89 (169)
T ss_dssp             HHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHH------HHHHHHHHHHHHHHT---SSSEEEECCTTGGGSHHHH
T ss_pred             HHHHHHHHCCCEEEECHHHHHHHCCCCCCHHHHHHHH------HHHHHHHHHHHHHCC---CCCEEEECCCHHHHHHHHH
T ss_conf             9999999699969500567766255432205666566------789998888776415---5415763142013334466


Q ss_pred             HHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99998299997788853898999999847976798882001468999825754110578999399999999999997999
Q 028770           80 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA  159 (204)
Q Consensus        80 ~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~  159 (204)
                      ..+..    ....+++.++...+..|...+.....                     ..........+...+..+      
T Consensus        90 ~~l~~----~~~~~~~~~~~~~~~~r~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~------  138 (169)
T d1kaga_          90 NRLSA----RGVVVYLETTIEKQLARTQRDKKRPL---------------------LHVETPPREVLEALANER------  138 (169)
T ss_dssp             HHHHH----HSEEEECCCCHHHHHSCC------CC---------------------SSSSCCCHHHHHHHHHHH------
T ss_pred             HHHHH----CCEEEECCCCHHHHHHHHHHCCCCCH---------------------HCCCCCCHHHHHHHHHHH------
T ss_conf             77640----54233204767886457652333230---------------------003565166888889875------


Q ss_pred             HHHHHHC-CEEEEEC-CCCHHHHHHHHHHHH
Q ss_conf             9998323-5667809-999788999999999
Q 028770          160 VLSLYED-VTVEVNG-SVNKEDVFAQIDVAL  188 (204)
Q Consensus       160 i~~~y~~-~~~~IDa-~~~~~~V~~~i~~~l  188 (204)
                       ...|.. -=++||. +++++++.+.|.+.|
T Consensus       139 -~~~y~~~~d~~Idt~~~s~ee~v~~Ii~~l  168 (169)
T d1kaga_         139 -NPLYEEIADVTIRTDDQSAKVVANQIIHML  168 (169)
T ss_dssp             -HHHHHHHCSEEC-----CHHHHHHHHHHHH
T ss_pred             -HHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             -042202498999999799999999999976


No 45 
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=90.82  E-value=0.42  Score=23.30  Aligned_cols=145  Identities=17%  Similarity=0.076  Sum_probs=71.9

Q ss_pred             HHHHHCCCEECHHHHHHHHHHCCCHHHH---------------HHHHHHHCCC--------CCCHHHHHHHHHHHHCCCC
Q ss_conf             4647199410788999999982994599---------------9999988399--------9799999999999863999
Q 028770            5 SYMQYGLVHIAAGDLLRAEIAAGSENGK---------------RAKEHMEKGQ--------LVPDEIVVTMVKERLSQPD   61 (204)
Q Consensus         5 ~a~~~g~~~Is~~~llr~~i~~~t~~g~---------------~i~~~l~~G~--------~vpde~i~~ll~~~l~~~~   61 (204)
                      +-+++|+.+++.+++.+.......+...               .+.+.+....        .+.+ .+...+........
T Consensus        22 ~l~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~  100 (191)
T d1uf9a_          22 LLRSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKALEAVVHP-EVRRLLMEELSRLE  100 (191)
T ss_dssp             HHHHTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHHHHHHHH-HHHHHHHHHHHTCC
T ss_pred             HHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHCC
T ss_conf             99987990998658888760022232111356410158512456777640472122112224357-77778776433026


Q ss_pred             CCCCCEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCC
Q ss_conf             99985788466899998999998299997788853898999999847976798882001468999825754110578999
Q 028770           62 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD  141 (204)
Q Consensus        62 ~~~~G~vldGfPrt~~Qa~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd  141 (204)
                        ...+++++.+-....      .....|.+|+++||.++..+|+..|.-.                             
T Consensus       101 --~~~vi~e~~~~~~~~------~~~~~d~vI~v~a~~e~r~~Rl~~R~~~-----------------------------  143 (191)
T d1uf9a_         101 --APLVFLEIPLLFEKG------WEGRLHGTLLVAAPLEERVRRVMARSGL-----------------------------  143 (191)
T ss_dssp             --CSEEEEECTTTTTTT------CGGGSSEEEEECCCHHHHHHHHHTTTCC-----------------------------
T ss_pred             --CCEEEEEEECCCCCC------CCCCCEEEEEEECCHHHHHHHHHHCCCC-----------------------------
T ss_conf             --616999840100245------4433102799803236678998733520-----------------------------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             39999999999999799999983235667809999788999999999997
Q 028770          142 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGSVNKEDVFAQIDVALTNL  191 (204)
Q Consensus       142 ~~e~i~~rl~~y~~~~~~i~~~y~~~~~~IDa~~~~~~V~~~i~~~l~~~  191 (204)
                      +.+.+..++..... ..... .+. .+ .|+-+.+.+.+..+|..++.+.
T Consensus       144 ~~~~~~~~~~~q~~-~~~~~-~~a-D~-vI~N~~s~~~l~~~v~~il~~l  189 (191)
T d1uf9a_         144 SREEVLARERAQMP-EEEKR-KRA-TW-VLENTGSLEDLERALKAVLAEL  189 (191)
T ss_dssp             TTHHHHHHHTTSCC-HHHHH-HHC-SE-EECCSSHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHCCC-HHHHH-HHC-CE-EEECCCCHHHHHHHHHHHHHHC
T ss_conf             39999999996799-89999-859-99-9989999999999999999974


No 46 
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=89.92  E-value=0.5  Score=22.86  Aligned_cols=81  Identities=22%  Similarity=0.293  Sum_probs=47.5

Q ss_pred             HHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99998299997788853898999999847976798882001468999825754110578999399999999999997999
Q 028770           80 TALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEA  159 (204)
Q Consensus        80 ~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~  159 (204)
                      ..+......|..++++..+.+++.+|+.                             .|..++++.+..|+..+..... 
T Consensus       104 ~~l~~~~~~~~~I~i~~~~~e~l~~RL~-----------------------------~R~~~~~e~i~~rl~~~~~~~~-  153 (190)
T d1lvga_         104 RSIKKTDLCPIYIFVQPPSLDVLEQRLR-----------------------------LRNTETEESLAKRLAAARTDME-  153 (190)
T ss_dssp             HHHTTSSCCCEEEEEECSCHHHHHHHHH-----------------------------HHTCSCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHCCCCCEEEEEECCHHHHHHHHHH-----------------------------HCCCCCHHHHHHHHHHHHHHHH-
T ss_conf             3344215652699985552788887776-----------------------------4055205789999999999998-


Q ss_pred             HHHHHH--C--CEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999832--3--56678099997889999999999977632
Q 028770          160 VLSLYE--D--VTVEVNGSVNKEDVFAQIDVALTNLLEQR  195 (204)
Q Consensus       160 i~~~y~--~--~~~~IDa~~~~~~V~~~i~~~l~~~~~~~  195 (204)
                         +..  .  .++.+|  .+.++.++++..+|...+.+.
T Consensus       154 ---~~~~~~~fd~iI~N--~dle~a~~~l~~iI~~~~~k~  188 (190)
T d1lvga_         154 ---SSKEPGLFDLVIIN--DDLDKAYATLKQALSEEIKKA  188 (190)
T ss_dssp             ---GGGSTTTCSEEEEC--SSHHHHHHHHHHHTHHHHHHT
T ss_pred             ---HHHHCCCCCEEEEC--CCHHHHHHHHHHHHHHHHHCC
T ss_conf             ---44413899889989--299999999999999998510


No 47 
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}
Probab=82.84  E-value=0.39  Score=23.49  Aligned_cols=45  Identities=18%  Similarity=0.049  Sum_probs=31.7

Q ss_pred             EEEECCCCCH--HHHHH--------------HHH---CCCCCCEEEEECCCHHHHHHHHHCCCC
Q ss_conf             7884668999--98999--------------998---299997788853898999999847976
Q 028770           67 WLLDGYPRSL--SQATA--------------LKK---YGFQPDLFILLEVPEDTLVERVVGRRL  111 (204)
Q Consensus        67 ~vldGfPrt~--~Qa~~--------------l~~---~~~~pd~vI~L~~~~~~~~~R~~~r~~  111 (204)
                      +|.|.+|-+-  .++..              +..   ....||.+|+|++|.+++++|+..|..
T Consensus       119 VI~DR~~~Ss~~~F~~~~~~~G~i~~~~~~~l~~~~~~~~~pdliIyLd~~pe~~l~RIk~RgR  182 (331)
T d1osna_         119 MLSDRHPIASTICFPLSRYLVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRAR  182 (331)
T ss_dssp             EEEESCTHHHHTHHHHHHHHHTSSCGGGHHHHHTTCCCCCSCCEEEEEECCHHHHHHHCC----
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf             9998987577788999765469989999999999730469999899996999999999997599


No 48 
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}
Probab=80.65  E-value=1.5  Score=20.18  Aligned_cols=47  Identities=19%  Similarity=0.274  Sum_probs=32.1

Q ss_pred             CCEEEECCCCCH----------------HHHHHHHHC---CCCCCEEEEECCCHHHHHHHHHCCCC
Q ss_conf             857884668999----------------989999982---99997788853898999999847976
Q 028770           65 NGWLLDGYPRSL----------------SQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRL  111 (204)
Q Consensus        65 ~G~vldGfPrt~----------------~Qa~~l~~~---~~~pd~vI~L~~~~~~~~~R~~~r~~  111 (204)
                      ..+|+|.+|-+-                .....+..+   ...||.+|+|++|.+++++|+..|..
T Consensus       112 ~ivI~DRs~~S~~~vFa~~~~~~G~ms~~~~~~l~~~~~~~~~pdliIyLd~~pe~~l~RI~~RgR  177 (329)
T d1e2ka_         112 LTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQR  177 (329)
T ss_dssp             EEEEEECCHHHHHTHHHHHHHHTTSSCHHHHHHHHHTCCCCCTTCEEEEEECCHHHHHHHHHHSCC
T ss_pred             CCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf             731442233032489999987569999999999999820669998899996999999999997399


No 49 
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=79.90  E-value=1.6  Score=20.03  Aligned_cols=75  Identities=25%  Similarity=0.244  Sum_probs=45.7

Q ss_pred             HHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999829999778885389899999984797679888200146899982575411057899939999999999999799
Q 028770           79 ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE  158 (204)
Q Consensus        79 a~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~  158 (204)
                      +..+......|..++++..+.+++.+|+..|.                             .++++.+++|+..+.... 
T Consensus       106 ~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg-----------------------------~~~~e~I~~Rl~~~~~e~-  155 (182)
T d1znwa1         106 ARAIKKTMPEAVTVFLAPPSWQDLQARLIGRG-----------------------------TETADVIQRRLDTARIEL-  155 (182)
T ss_dssp             HHHHHHHCTTSEEEEEECSCHHHHHHHHHTTS-----------------------------CSCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHCCCCEEEEEEECCCHHHHHHHHHHCC-----------------------------CCHHHHHHHHHHHHHHHH-
T ss_conf             45552037632677543250999987766327-----------------------------652789999999999999-


Q ss_pred             HHHHHHHC-CEEEEECCCCHHHHHHHHHHHH
Q ss_conf             99998323-5667809999788999999999
Q 028770          159 AVLSLYED-VTVEVNGSVNKEDVFAQIDVAL  188 (204)
Q Consensus       159 ~i~~~y~~-~~~~IDa~~~~~~V~~~i~~~l  188 (204)
                         .++.. ..+.+  +.+.++.++++..+|
T Consensus       156 ---~~~~~fD~vI~--Nddle~a~~~l~~iI  181 (182)
T d1znwa1         156 ---AAQGDFDKVVV--NRRLESACAELVSLL  181 (182)
T ss_dssp             ---HGGGGSSEEEE--CSSHHHHHHHHHHHH
T ss_pred             ---HHHHCCCEEEE--CCCHHHHHHHHHHHH
T ss_conf             ---63741999998--969999999999975


No 50 
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}
Probab=76.33  E-value=0.67  Score=22.16  Aligned_cols=46  Identities=13%  Similarity=0.104  Sum_probs=31.3

Q ss_pred             CEEEECCCCCH----------------HHHHHHHHC---CCCCCEEEEECCCHHHHHHHHHCCCC
Q ss_conf             57884668999----------------989999982---99997788853898999999847976
Q 028770           66 GWLLDGYPRSL----------------SQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRL  111 (204)
Q Consensus        66 G~vldGfPrt~----------------~Qa~~l~~~---~~~pd~vI~L~~~~~~~~~R~~~r~~  111 (204)
                      .+|+|.+|-+-                .....+...   ...||.+|+|++|.+++++|+..|..
T Consensus       115 ~vI~DR~~~Ss~~iF~~~~y~~G~ls~~~~~~l~~~~~~~~~pd~iIyLd~~pe~~l~RI~~RgR  179 (333)
T d1p6xa_         115 TLVFDRHPVASTVCFPAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTRAR  179 (333)
T ss_dssp             EEEEESCTHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCCCTTEEEEEEECCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf             69997781403489999864079989999999999843668999899996999999999997499


No 51 
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=73.15  E-value=1.4  Score=20.43  Aligned_cols=87  Identities=10%  Similarity=0.013  Sum_probs=47.2

Q ss_pred             CCEEEEC-CCCCHHHHHHH-HHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             8578846-68999989999-982999977888538989999998479767988820014689998257541105789993
Q 028770           65 NGWLLDG-YPRSLSQATAL-KKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT  142 (204)
Q Consensus        65 ~G~vldG-fPrt~~Qa~~l-~~~~~~pd~vI~L~~~~~~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~~~rl~~r~dd~  142 (204)
                      ..+++++ +-........+ ......+..+|+|.||.+++.+|...|...                          ..+.
T Consensus        87 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~--------------------------~~~~  140 (178)
T d1qhxa_          87 ARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDR--------------------------VAGM  140 (178)
T ss_dssp             CEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSS--------------------------CTTH
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCC--------------------------CHHH
T ss_conf             54278642013599999998730488611223689999999998706775--------------------------5113


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECC-CCHHHHHHHHHHHH
Q ss_conf             99999999999997999999832356678099-99788999999999
Q 028770          143 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVNGS-VNKEDVFAQIDVAL  188 (204)
Q Consensus       143 ~e~i~~rl~~y~~~~~~i~~~y~~~~~~IDa~-~~~~~V~~~i~~~l  188 (204)
                      .+   .....+        ..+...-.+||.+ .+++++.+.|...+
T Consensus       141 ~~---~~~~~~--------~~~~~~dl~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         141 AA---KQAYVV--------HEGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             HH---HHTTGG--------GTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             HH---HHHHHH--------HCCCCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf             34---306666--------3678899899899999999999999720


No 52 
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.97  E-value=4.7  Score=17.44  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=28.5

Q ss_pred             CCCEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC
Q ss_conf             98578846689999899999829999778885389899999984797
Q 028770           64 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR  110 (204)
Q Consensus        64 ~~G~vldGfPrt~~Qa~~l~~~~~~pd~vI~L~~~~~~~~~R~~~r~  110 (204)
                      ..-++++|.+--..  ..+..   ..|+.|++++|.++.++|...|.
T Consensus       111 ~~~iiveg~~~l~~--~~l~~---~~D~~i~v~~~~~~~~~R~~~Rd  152 (213)
T d1uj2a_         111 ADVVLFEGILAFYS--QEVRD---LFQMKLFVDTDADTRLSRRVLRD  152 (213)
T ss_dssp             CSEEEEECTTTTSS--HHHHH---HCSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCEEEECCHHHHCC--HHHHH---HHHEEEEECCCHHHHHHHHHHHH
T ss_conf             65477422344236--87886---64410345378899999999877


No 53 
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.16  E-value=7.1  Score=16.41  Aligned_cols=43  Identities=5%  Similarity=0.017  Sum_probs=28.1

Q ss_pred             CCEEEECCCCCHHHHHHHHH---CCCCCCEEEEECCCHHHHHHHHH
Q ss_conf             85788466899998999998---29999778885389899999984
Q 028770           65 NGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVV  107 (204)
Q Consensus        65 ~G~vldGfPrt~~Qa~~l~~---~~~~pd~vI~L~~~~~~~~~R~~  107 (204)
                      .-.|+|+-..+..+-..+.+   ....+..++...|+++.+.++..
T Consensus        87 ~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (213)
T d1bifa1          87 HVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI  132 (213)
T ss_dssp             SEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHH
T ss_conf             8898606776489999899998754980799885036788888709


No 54 
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}
Probab=24.87  E-value=18  Score=14.12  Aligned_cols=61  Identities=21%  Similarity=0.320  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CEEEEECCCCHHHHHHHHHHHHH
Q ss_conf             89998257541105789993999999999999979999998323-56678099997889999999999
Q 028770          123 YSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED-VTVEVNGSVNKEDVFAQIDVALT  189 (204)
Q Consensus       123 ~~pp~~~~~~~rl~~r~dd~~e~i~~rl~~y~~~~~~i~~~y~~-~~~~IDa~~~~~~V~~~i~~~l~  189 (204)
                      +.||...+...||..|..++++.+..|+........    ++.. .++.+|  .+.+..++.+..+|.
T Consensus       121 i~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a~~E~~----~~~~fD~vIvN--ddl~~a~~el~~iI~  182 (205)
T d1s96a_         121 ILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMS----HYAEYDYLIVN--DDFDTALTDLKTIIR  182 (205)
T ss_dssp             EECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHT----TGGGSSEEEEC--SSHHHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----HHHCCCEEEEC--CCHHHHHHHHHHHHH
T ss_conf             320331899999875487447788888999999998----88579999989--599999999999999


Done!