Query 028771
Match_columns 204
No_of_seqs 152 out of 2020
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 16:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3139 N-acetyltransferase [G 99.9 4.1E-24 8.8E-29 148.8 15.6 151 17-167 13-164 (165)
2 TIGR01575 rimI ribosomal-prote 99.9 2.8E-20 6.1E-25 129.7 15.6 130 30-163 1-131 (131)
3 PRK09491 rimI ribosomal-protei 99.8 5.1E-19 1.1E-23 126.2 18.0 139 24-167 5-146 (146)
4 PRK10146 aminoalkylphosphonic 99.8 1.1E-19 2.5E-24 129.1 14.0 125 24-148 7-137 (144)
5 COG0456 RimI Acetyltransferase 99.8 3.8E-19 8.3E-24 130.6 14.5 146 22-167 13-173 (177)
6 PRK10140 putative acetyltransf 99.8 7.2E-18 1.6E-22 122.0 18.6 144 20-165 4-160 (162)
7 TIGR03827 GNAT_ablB putative b 99.8 4.2E-18 9.1E-23 133.1 16.9 147 17-167 113-266 (266)
8 KOG3235 Subunit of the major N 99.8 2.6E-19 5.7E-24 124.0 7.8 146 24-169 5-155 (193)
9 PRK03624 putative acetyltransf 99.8 7.6E-18 1.7E-22 118.6 15.5 123 23-149 5-130 (140)
10 PF00583 Acetyltransf_1: Acety 99.8 5.9E-18 1.3E-22 109.0 12.0 81 65-145 1-83 (83)
11 TIGR02406 ectoine_EctA L-2,4-d 99.8 1.1E-17 2.3E-22 120.9 14.5 126 24-150 2-129 (157)
12 TIGR02382 wecD_rffC TDP-D-fuco 99.8 1.5E-17 3.2E-22 123.9 15.2 129 22-153 45-189 (191)
13 PHA00673 acetyltransferase dom 99.8 1.9E-17 4.1E-22 117.2 14.5 127 21-149 7-146 (154)
14 PRK10809 ribosomal-protein-S5- 99.8 7.7E-17 1.7E-21 120.3 18.3 153 13-167 11-187 (194)
15 TIGR03103 trio_acet_GNAT GNAT- 99.8 5.3E-17 1.1E-21 138.0 19.0 136 18-153 81-221 (547)
16 COG1247 Sortase and related ac 99.8 7.5E-17 1.6E-21 115.7 16.9 148 23-170 4-167 (169)
17 PTZ00330 acetyltransferase; Pr 99.8 8.3E-17 1.8E-21 114.7 16.9 126 20-149 7-141 (147)
18 PRK10975 TDP-fucosamine acetyl 99.8 9.6E-17 2.1E-21 119.9 16.6 124 25-151 51-190 (194)
19 PF13420 Acetyltransf_4: Acety 99.8 1.2E-16 2.7E-21 114.8 16.5 130 24-155 2-145 (155)
20 PRK10151 ribosomal-protein-L7/ 99.8 3.5E-16 7.5E-21 115.3 19.1 151 15-168 6-177 (179)
21 PF13527 Acetyltransf_9: Acety 99.7 9.2E-17 2E-21 111.7 14.4 119 24-147 3-127 (127)
22 KOG3216 Diamine acetyltransfer 99.7 2.2E-16 4.7E-21 109.1 15.3 136 22-157 5-154 (163)
23 PF13673 Acetyltransf_10: Acet 99.7 1.3E-16 2.8E-21 109.3 14.3 104 30-144 1-117 (117)
24 PF13523 Acetyltransf_8: Acety 99.7 2.4E-16 5.2E-21 113.1 16.0 128 24-151 2-143 (152)
25 PLN02706 glucosamine 6-phospha 99.7 5.9E-16 1.3E-20 110.8 16.5 128 18-149 5-144 (150)
26 PRK10314 putative acyltransfer 99.7 4.4E-17 9.6E-22 117.1 10.4 133 27-167 13-150 (153)
27 TIGR03448 mycothiol_MshD mycot 99.7 7.5E-16 1.6E-20 122.0 17.7 134 16-150 146-289 (292)
28 KOG3234 Acetyltransferase, (GN 99.7 4E-17 8.7E-22 113.1 8.7 146 28-173 9-157 (173)
29 PRK15130 spermidine N1-acetylt 99.7 1.5E-15 3.2E-20 112.6 17.3 150 17-169 4-168 (186)
30 COG1246 ArgA N-acetylglutamate 99.7 2.7E-16 5.9E-21 109.9 11.8 121 23-149 3-123 (153)
31 PRK07757 acetyltransferase; Pr 99.7 5.8E-16 1.3E-20 111.1 13.9 115 23-149 4-122 (152)
32 PRK07922 N-acetylglutamate syn 99.7 1.7E-15 3.6E-20 110.7 14.7 118 23-149 8-127 (169)
33 KOG2488 Acetyltransferase (GNA 99.7 5.4E-16 1.2E-20 111.0 11.6 121 29-149 54-182 (202)
34 PHA01807 hypothetical protein 99.7 1.2E-15 2.7E-20 109.0 13.4 118 25-142 8-136 (153)
35 TIGR01890 N-Ac-Glu-synth amino 99.7 6.9E-16 1.5E-20 128.2 13.9 121 23-149 285-405 (429)
36 TIGR03585 PseH pseudaminic aci 99.7 6.5E-15 1.4E-19 105.9 15.7 137 24-163 4-155 (156)
37 PRK10514 putative acetyltransf 99.7 7.2E-15 1.6E-19 104.5 15.4 128 24-164 5-142 (145)
38 PLN02825 amino-acid N-acetyltr 99.7 1E-15 2.2E-20 128.1 12.5 120 20-149 367-490 (515)
39 PRK05279 N-acetylglutamate syn 99.7 1.4E-15 3E-20 126.9 12.6 122 22-149 296-417 (441)
40 PRK10562 putative acetyltransf 99.7 1.2E-14 2.6E-19 103.5 15.8 130 24-167 3-142 (145)
41 PF13508 Acetyltransf_7: Acety 99.7 4E-15 8.7E-20 95.0 12.0 77 60-146 3-79 (79)
42 PRK09831 putative acyltransfer 99.6 3.4E-15 7.3E-20 106.6 11.4 127 24-166 4-144 (147)
43 TIGR01686 FkbH FkbH-like domai 99.6 1.7E-14 3.7E-19 115.6 15.4 124 17-147 184-319 (320)
44 TIGR03448 mycothiol_MshD mycot 99.6 1.1E-14 2.4E-19 115.3 13.8 123 24-153 4-132 (292)
45 KOG3138 Predicted N-acetyltran 99.6 3.2E-15 6.9E-20 108.7 9.4 151 20-171 16-176 (187)
46 COG3153 Predicted acetyltransf 99.6 5.8E-14 1.3E-18 101.1 15.7 145 22-173 5-156 (171)
47 PRK12308 bifunctional arginino 99.6 2.2E-14 4.8E-19 123.9 14.1 120 17-149 461-584 (614)
48 PRK01346 hypothetical protein; 99.6 8.9E-14 1.9E-18 115.2 15.1 128 20-153 7-140 (411)
49 PF13302 Acetyltransf_3: Acety 99.5 7.6E-13 1.7E-17 93.4 15.1 123 20-145 2-142 (142)
50 PRK13688 hypothetical protein; 99.5 5.1E-13 1.1E-17 95.9 13.3 106 25-150 22-134 (156)
51 PF08445 FR47: FR47-like prote 99.5 6.2E-13 1.3E-17 86.1 12.3 61 88-149 22-82 (86)
52 KOG3396 Glucosamine-phosphate 99.5 1.4E-12 3.1E-17 88.4 12.4 127 18-148 5-143 (150)
53 COG2153 ElaA Predicted acyltra 99.5 4.4E-13 9.6E-18 92.1 9.6 103 60-168 49-153 (155)
54 cd02169 Citrate_lyase_ligase C 99.5 6.4E-13 1.4E-17 104.7 11.1 78 61-149 7-84 (297)
55 COG3393 Predicted acetyltransf 99.4 7.8E-12 1.7E-16 94.6 12.5 92 58-153 175-266 (268)
56 TIGR00124 cit_ly_ligase [citra 99.4 1.9E-11 4.2E-16 97.8 14.8 81 60-151 31-111 (332)
57 COG1670 RimL Acetyltransferase 99.3 3E-11 6.5E-16 88.7 12.4 98 69-167 77-179 (187)
58 COG3981 Predicted acetyltransf 99.3 5.3E-11 1.1E-15 84.5 9.6 90 62-152 71-162 (174)
59 PF13718 GNAT_acetyltr_2: GNAT 99.2 1.2E-09 2.5E-14 80.6 14.1 122 46-168 13-196 (196)
60 KOG3397 Acetyltransferases [Ge 99.2 5E-10 1.1E-14 79.3 10.9 129 18-153 11-145 (225)
61 KOG4135 Predicted phosphogluco 99.1 4.6E-09 1E-13 72.6 13.2 138 11-149 5-170 (185)
62 TIGR01211 ELP3 histone acetylt 99.1 1.4E-09 3E-14 91.9 12.7 90 58-150 409-517 (522)
63 PF12746 GNAT_acetyltran: GNAT 99.1 3E-09 6.5E-14 82.3 13.1 89 60-155 165-253 (265)
64 cd04301 NAT_SF N-Acyltransfera 99.1 2.4E-09 5.2E-14 64.1 8.7 63 63-126 2-64 (65)
65 PF08444 Gly_acyl_tr_C: Aralky 99.0 3.7E-09 7.9E-14 67.5 7.0 74 67-148 6-79 (89)
66 COG4552 Eis Predicted acetyltr 98.7 9.1E-08 2E-12 75.4 8.8 90 59-153 38-131 (389)
67 COG1444 Predicted P-loop ATPas 98.7 4.8E-07 1E-11 78.7 13.0 122 47-170 457-613 (758)
68 PF14542 Acetyltransf_CG: GCN5 98.6 4.4E-07 9.5E-12 57.4 8.7 70 63-141 2-71 (78)
69 PF12568 DUF3749: Acetyltransf 98.6 6.5E-07 1.4E-11 61.0 9.9 93 48-147 27-123 (128)
70 COG3375 Uncharacterized conser 98.6 1.2E-06 2.7E-11 64.8 11.9 136 19-155 2-143 (266)
71 COG3818 Predicted acetyltransf 98.6 3.7E-07 8E-12 61.9 7.6 120 28-151 15-150 (167)
72 KOG4144 Arylalkylamine N-acety 98.5 2.3E-07 5.1E-12 64.7 4.7 124 24-150 15-162 (190)
73 COG2388 Predicted acetyltransf 98.4 1.4E-06 3E-11 57.2 7.1 62 58-122 13-74 (99)
74 COG3053 CitC Citrate lyase syn 98.3 8E-06 1.7E-10 63.1 9.6 81 61-152 37-118 (352)
75 PF00765 Autoind_synth: Autoin 98.2 6.4E-05 1.4E-09 55.4 12.8 134 29-165 8-171 (182)
76 COG5628 Predicted acetyltransf 98.2 2.4E-05 5.2E-10 52.4 8.8 82 61-146 38-120 (143)
77 PF13480 Acetyltransf_6: Acety 98.2 0.00011 2.3E-09 51.4 12.8 107 19-129 19-136 (142)
78 COG0454 WecD Histone acetyltra 98.1 7.8E-06 1.7E-10 54.3 4.9 44 93-144 87-130 (156)
79 PF06852 DUF1248: Protein of u 98.0 0.00024 5.2E-09 52.0 12.3 117 28-149 12-137 (181)
80 PF01233 NMT: Myristoyl-CoA:pr 97.9 0.0004 8.6E-09 49.4 11.1 110 17-126 21-149 (162)
81 TIGR03694 exosort_acyl putativ 97.6 0.0011 2.5E-08 51.1 10.9 118 26-147 14-196 (241)
82 PRK13834 putative autoinducer 97.6 0.0022 4.7E-08 48.4 12.0 117 29-148 16-164 (207)
83 COG3916 LasI N-acyl-L-homoseri 97.4 0.0079 1.7E-07 44.7 12.0 135 30-167 16-181 (209)
84 PRK01305 arginyl-tRNA-protein 97.3 0.01 2.3E-07 45.5 12.1 83 46-132 128-212 (240)
85 PF04377 ATE_C: Arginine-tRNA- 97.3 0.0043 9.3E-08 42.9 9.0 80 48-131 25-106 (128)
86 TIGR03019 pepcterm_femAB FemAB 97.2 0.0083 1.8E-07 48.5 11.7 120 28-151 157-283 (330)
87 PF13880 Acetyltransf_13: ESCO 97.2 0.00067 1.5E-08 41.5 3.7 30 87-116 5-34 (70)
88 PF04958 AstA: Arginine N-succ 97.1 0.023 4.9E-07 45.8 12.8 128 21-148 2-187 (342)
89 cd04264 DUF619-NAGS DUF619 dom 97.0 0.0069 1.5E-07 39.9 7.9 71 62-139 10-80 (99)
90 PRK14852 hypothetical protein; 96.9 0.0077 1.7E-07 54.7 9.8 150 16-168 25-200 (989)
91 PRK10456 arginine succinyltran 96.9 0.018 3.9E-07 46.3 10.4 93 21-113 2-145 (344)
92 TIGR03827 GNAT_ablB putative b 96.8 0.0054 1.2E-07 48.1 7.2 64 103-170 21-84 (266)
93 TIGR03244 arg_catab_AstA argin 96.8 0.018 3.9E-07 46.2 9.9 90 23-112 2-142 (336)
94 COG1243 ELP3 Histone acetyltra 96.8 0.0027 5.8E-08 52.5 5.0 85 60-149 404-509 (515)
95 PF04768 DUF619: Protein of un 96.8 0.1 2.2E-06 38.0 12.7 110 30-148 33-145 (170)
96 cd04265 DUF619-NAGS-U DUF619 d 96.7 0.017 3.6E-07 38.1 7.5 70 62-139 11-80 (99)
97 TIGR03243 arg_catab_AOST argin 96.6 0.0098 2.1E-07 47.6 7.3 93 23-115 2-145 (335)
98 TIGR03245 arg_AOST_alph argini 96.6 0.025 5.5E-07 45.3 9.5 92 23-114 2-145 (336)
99 PF05301 Mec-17: Touch recepto 96.6 0.048 1E-06 36.9 9.3 82 60-144 4-101 (120)
100 KOG2036 Predicted P-loop ATPas 96.6 0.012 2.7E-07 51.2 8.0 84 87-170 614-747 (1011)
101 COG3882 FkbH Predicted enzyme 96.5 0.014 2.9E-07 48.8 7.4 121 24-148 417-549 (574)
102 KOG2779 N-myristoyl transferas 96.0 0.056 1.2E-06 43.4 8.2 75 45-119 116-199 (421)
103 PF01853 MOZ_SAS: MOZ/SAS fami 95.9 0.061 1.3E-06 39.6 7.7 48 70-120 66-113 (188)
104 KOG2535 RNA polymerase II elon 95.8 0.019 4.2E-07 45.9 5.0 49 97-148 497-546 (554)
105 PF02474 NodA: Nodulation prot 95.7 0.049 1.1E-06 39.3 6.1 146 27-176 16-185 (196)
106 PF09390 DUF1999: Protein of u 95.7 0.46 1E-05 33.2 12.0 123 20-149 1-141 (161)
107 PHA01733 hypothetical protein 95.6 0.051 1.1E-06 38.5 6.1 86 59-149 46-132 (153)
108 COG5630 ARG2 Acetylglutamate s 95.3 0.13 2.7E-06 41.8 7.8 112 28-147 344-458 (495)
109 PF11039 DUF2824: Protein of u 95.1 0.7 1.5E-05 31.9 10.9 99 59-163 37-136 (151)
110 PF13444 Acetyltransf_5: Acety 95.0 0.089 1.9E-06 34.8 5.6 50 60-109 30-100 (101)
111 PLN03238 probable histone acet 94.6 0.13 2.9E-06 40.3 6.2 49 69-120 140-188 (290)
112 KOG4601 Uncharacterized conser 94.5 0.48 1E-05 35.9 8.6 56 88-146 109-165 (264)
113 PHA00432 internal virion prote 94.4 0.43 9.3E-06 33.3 7.8 84 60-149 37-121 (137)
114 PLN03239 histone acetyltransfe 94.1 0.18 3.9E-06 40.6 6.1 49 69-120 198-246 (351)
115 COG3138 AstA Arginine/ornithin 94.1 0.39 8.4E-06 37.6 7.6 88 22-109 3-141 (336)
116 PF09924 DUF2156: Uncharacteri 93.8 1 2.3E-05 35.8 10.2 108 20-130 133-248 (299)
117 PRK00756 acyltransferase NodA; 93.8 0.64 1.4E-05 33.4 7.7 113 26-142 15-136 (196)
118 COG5092 NMT1 N-myristoyl trans 93.6 0.96 2.1E-05 36.0 9.2 98 22-119 83-197 (451)
119 PF11124 Pho86: Inorganic phos 93.6 1.8 3.8E-05 34.4 10.6 90 59-148 168-270 (304)
120 PTZ00064 histone acetyltransfe 93.3 0.22 4.8E-06 41.9 5.5 49 69-120 369-417 (552)
121 KOG2747 Histone acetyltransfer 92.9 0.18 3.9E-06 41.3 4.4 33 87-119 260-292 (396)
122 cd04266 DUF619-NAGS-FABP DUF61 92.8 1.2 2.5E-05 29.9 7.5 69 65-139 14-87 (108)
123 KOG2779 N-myristoyl transferas 92.7 3.2 6.9E-05 33.7 11.0 123 24-154 264-402 (421)
124 COG2401 ABC-type ATPase fused 92.4 0.067 1.4E-06 44.4 1.4 62 87-148 241-307 (593)
125 PLN00104 MYST -like histone ac 92.1 0.23 5E-06 41.5 4.2 49 69-120 291-339 (450)
126 PF12261 T_hemolysin: Thermost 91.1 1.7 3.7E-05 31.9 7.5 76 66-148 41-141 (179)
127 PF11090 DUF2833: Protein of u 91.0 2.8 6E-05 26.8 7.8 77 62-148 2-83 (86)
128 PRK04531 acetylglutamate kinas 90.9 1.8 3.8E-05 36.1 8.2 103 29-147 262-366 (398)
129 COG2935 Putative arginyl-tRNA: 90.3 6.9 0.00015 30.2 11.9 83 46-132 129-219 (253)
130 PF02799 NMT_C: Myristoyl-CoA: 89.5 7.1 0.00015 29.0 14.1 123 24-154 32-170 (190)
131 KOG2696 Histone acetyltransfer 89.2 1.4 3E-05 35.9 6.0 59 70-129 199-258 (403)
132 KOG3014 Protein involved in es 87.5 2.6 5.6E-05 32.5 6.2 33 85-117 181-213 (257)
133 PHA02769 hypothetical protein; 86.2 0.75 1.6E-05 30.9 2.5 43 105-149 94-139 (154)
134 PF04339 DUF482: Protein of un 86.0 10 0.00022 31.4 9.4 114 27-151 211-331 (370)
135 PRK02983 lysS lysyl-tRNA synth 84.2 7.5 0.00016 36.9 8.8 60 67-130 428-487 (1094)
136 PF02388 FemAB: FemAB family; 82.5 4.6 0.0001 33.8 6.2 107 60-169 35-160 (406)
137 cd03173 DUF619-like DUF619 dom 81.2 13 0.00028 24.5 7.8 67 64-139 13-79 (98)
138 COG5653 Protein involved in ce 80.7 25 0.00054 29.3 9.5 86 42-131 250-339 (406)
139 KOG4387 Ornithine decarboxylas 79.8 14 0.00031 27.0 7.0 79 92-170 104-186 (191)
140 COG5027 SAS2 Histone acetyltra 77.9 1.7 3.7E-05 35.1 2.1 54 61-117 235-292 (395)
141 KOG3698 Hyaluronoglucosaminida 76.7 4.4 9.5E-05 35.2 4.3 57 93-149 822-878 (891)
142 COG2898 Uncharacterized conser 74.6 21 0.00045 31.1 7.8 61 66-129 399-459 (538)
143 cd07235 MRD Mitomycin C resist 69.3 5.8 0.00013 26.4 2.9 25 123-148 3-27 (122)
144 cd09012 Glo_EDI_BRP_like_24 Th 69.1 8.6 0.00019 25.7 3.7 16 133-148 12-27 (124)
145 PF07395 Mig-14: Mig-14; Inte 65.9 59 0.0013 25.6 8.0 113 10-122 119-239 (264)
146 PRK15312 antimicrobial resista 65.5 14 0.00031 29.3 4.6 108 13-120 150-267 (298)
147 cd08356 Glo_EDI_BRP_like_17 Th 63.9 7.3 0.00016 25.8 2.5 18 133-150 13-30 (113)
148 cd08353 Glo_EDI_BRP_like_7 Thi 63.2 6.7 0.00015 26.9 2.3 29 120-149 3-31 (142)
149 cd08350 BLMT_like BLMT, a bleo 62.1 12 0.00025 24.9 3.3 19 133-151 14-32 (120)
150 COG0807 RibA GTP cyclohydrolas 59.2 22 0.00049 26.5 4.5 51 93-152 120-170 (193)
151 PF02388 FemAB: FemAB family; 58.0 1E+02 0.0022 25.8 8.8 73 69-145 302-379 (406)
152 PF02100 ODC_AZ: Ornithine dec 58.0 54 0.0012 21.9 6.7 54 95-149 30-87 (108)
153 PF12953 DUF3842: Domain of un 54.1 26 0.00057 24.3 3.8 48 98-149 6-53 (131)
154 cd08358 Glo_EDI_BRP_like_21 Th 53.6 37 0.0008 23.3 4.7 27 123-150 5-32 (127)
155 PF04339 DUF482: Protein of un 53.4 1.3E+02 0.0028 25.0 8.7 86 61-149 45-160 (370)
156 cd08342 HPPD_N_like N-terminal 53.3 27 0.00058 23.8 4.0 28 122-150 2-30 (136)
157 PF00925 GTP_cyclohydro2: GTP 51.1 28 0.00062 25.2 3.9 47 95-150 121-167 (169)
158 cd04263 DUF619-NAGK-FABP DUF61 50.4 71 0.0015 21.0 7.8 69 62-139 11-79 (98)
159 PF03588 Leu_Phe_trans: Leucyl 50.3 99 0.0021 22.7 11.2 107 28-148 59-172 (173)
160 TIGR02990 ectoine_eutA ectoine 50.1 26 0.00056 27.1 3.7 45 105-149 104-151 (239)
161 COG3473 Maleate cis-trans isom 50.1 38 0.00083 25.7 4.4 38 112-149 109-149 (238)
162 PRK00393 ribA GTP cyclohydrola 50.0 41 0.00089 25.1 4.7 47 95-150 123-169 (197)
163 PRK09318 bifunctional 3,4-dihy 49.2 38 0.00083 28.2 4.8 49 93-150 307-355 (387)
164 PF08901 DUF1847: Protein of u 48.9 22 0.00048 25.4 2.9 45 109-153 43-91 (157)
165 TIGR00505 ribA GTP cyclohydrol 48.2 50 0.0011 24.5 4.9 47 95-150 120-166 (191)
166 KOG1472 Histone acetyltransfer 47.5 4.3 9.4E-05 36.3 -0.9 89 57-150 416-506 (720)
167 COG2266 GTP:adenosylcobinamide 47.1 53 0.0012 24.1 4.7 45 105-150 26-70 (177)
168 COG5092 NMT1 N-myristoyl trans 46.2 1.3E+02 0.0028 24.4 7.0 126 24-154 262-419 (451)
169 PRK09319 bifunctional 3,4-dihy 45.2 46 0.00099 29.2 4.8 49 94-151 331-379 (555)
170 cd08346 PcpA_N_like N-terminal 44.3 65 0.0014 20.9 4.8 29 121-150 2-31 (126)
171 PRK00301 aat leucyl/phenylalan 43.9 1.5E+02 0.0032 22.9 9.6 108 28-149 89-203 (233)
172 PRK14019 bifunctional 3,4-dihy 43.5 43 0.00092 27.8 4.2 45 96-150 318-362 (367)
173 PHA00771 head assembly protein 43.3 79 0.0017 21.9 4.7 75 87-164 62-137 (151)
174 PF04816 DUF633: Family of unk 43.1 43 0.00092 25.2 3.9 48 103-150 74-123 (205)
175 TIGR00667 aat leucyl/phenylala 41.4 1.5E+02 0.0032 22.1 10.2 108 28-149 61-173 (185)
176 COG5270 PUA domain (predicted 41.4 41 0.00088 24.9 3.3 21 60-80 163-183 (202)
177 PRK08815 GTP cyclohydrolase; P 40.7 60 0.0013 27.0 4.7 49 93-150 292-340 (375)
178 cd08344 MhqB_like_N N-terminal 40.6 28 0.0006 22.7 2.4 28 121-149 3-30 (112)
179 COG2348 Peptidoglycan interpep 39.7 2.4E+02 0.0051 24.0 9.0 100 62-163 42-158 (418)
180 PLN02831 Bifunctional GTP cycl 39.6 60 0.0013 27.7 4.6 47 95-150 362-408 (450)
181 cd07267 THT_Oxygenase_N N-term 39.2 34 0.00073 22.3 2.6 27 122-149 5-31 (113)
182 COG4353 Uncharacterized conser 38.8 1.5E+02 0.0033 21.5 7.7 78 67-148 36-127 (192)
183 PRK09311 bifunctional 3,4-dihy 37.4 73 0.0016 26.8 4.7 47 95-150 328-374 (402)
184 TIGR03645 glyox_marine lactoyl 36.4 35 0.00076 24.3 2.5 28 120-148 4-32 (162)
185 PF12652 CotJB: CotJB protein; 36.2 20 0.00044 22.5 1.0 36 107-142 3-38 (78)
186 cd07238 Glo_EDI_BRP_like_5 Thi 36.0 40 0.00088 21.7 2.6 16 133-148 12-28 (112)
187 COG2231 Uncharacterized protei 35.5 41 0.00089 25.4 2.7 40 102-148 121-160 (215)
188 PF13380 CoA_binding_2: CoA bi 35.4 1.2E+02 0.0027 20.3 4.9 78 61-148 29-107 (116)
189 PF14696 Glyoxalase_5: Hydroxy 34.9 16 0.00034 25.8 0.4 31 120-151 9-39 (139)
190 PF00903 Glyoxalase: Glyoxalas 34.8 43 0.00093 21.8 2.6 30 121-151 2-32 (128)
191 COG3607 Predicted lactoylgluta 34.5 28 0.00061 24.0 1.6 17 133-149 15-31 (133)
192 PF12681 Glyoxalase_2: Glyoxal 34.5 49 0.0011 21.0 2.8 19 133-151 7-26 (108)
193 cd07253 Glo_EDI_BRP_like_2 Thi 32.7 65 0.0014 20.9 3.2 30 120-150 3-33 (125)
194 PTZ00129 40S ribosomal protein 32.6 1.9E+02 0.004 20.7 6.5 45 105-149 74-129 (149)
195 PRK12485 bifunctional 3,4-dihy 31.9 91 0.002 25.9 4.4 27 120-149 338-364 (369)
196 cd07250 HPPD_C_like C-terminal 31.5 52 0.0011 24.3 2.8 31 120-150 3-35 (191)
197 PF06557 DUF1122: Protein of u 30.9 2.1E+02 0.0046 20.8 9.3 102 61-168 19-142 (170)
198 cd07265 2_3_CTD_N N-terminal d 30.3 57 0.0012 21.4 2.7 28 121-149 5-33 (122)
199 cd08352 Glo_EDI_BRP_like_1 Thi 30.3 97 0.0021 20.0 3.8 29 120-149 3-32 (125)
200 cd00641 GTP_cyclohydro2 GTP cy 29.8 1.2E+02 0.0027 22.4 4.5 47 95-150 122-168 (193)
201 PRK10291 glyoxalase I; Provisi 29.8 63 0.0014 21.6 2.8 17 133-149 8-25 (129)
202 PF00571 CBS: CBS domain CBS d 29.7 1E+02 0.0022 16.9 3.4 19 59-77 29-48 (57)
203 cd07243 2_3_CTD_C C-terminal d 29.4 74 0.0016 22.0 3.2 30 120-150 6-36 (143)
204 cd07246 Glo_EDI_BRP_like_8 Thi 28.9 1.3E+02 0.0029 19.3 4.3 19 132-150 12-31 (122)
205 PF10566 Glyco_hydro_97: Glyco 28.7 1.2E+02 0.0026 24.1 4.4 42 106-148 72-124 (273)
206 cd07240 ED_TypeI_classII_N N-t 28.4 1E+02 0.0022 19.8 3.6 28 122-150 4-32 (117)
207 cd08364 FosX FosX, a fosfomyci 27.6 1.1E+02 0.0023 20.7 3.7 29 120-149 4-33 (131)
208 COG0346 GloA Lactoylglutathion 27.4 88 0.0019 20.0 3.2 30 121-151 3-33 (138)
209 COG2384 Predicted SAM-dependen 26.8 1.6E+02 0.0035 22.6 4.6 47 103-149 93-141 (226)
210 cd08349 BLMA_like Bleomycin bi 26.6 72 0.0016 20.3 2.6 18 133-150 10-28 (112)
211 PRK14968 putative methyltransf 26.6 2E+02 0.0043 20.5 5.2 44 108-151 130-173 (188)
212 PF04015 DUF362: Domain of unk 26.3 1.6E+02 0.0035 21.8 4.7 49 101-149 17-67 (206)
213 PRK11478 putative lyase; Provi 25.9 85 0.0018 20.7 2.9 28 120-148 6-34 (129)
214 cd07242 Glo_EDI_BRP_like_6 Thi 25.7 1.3E+02 0.0029 19.7 3.9 29 120-149 1-33 (128)
215 cd07255 Glo_EDI_BRP_like_12 Th 25.4 78 0.0017 20.7 2.6 29 121-150 3-32 (125)
216 cd07241 Glo_EDI_BRP_like_3 Thi 25.4 89 0.0019 20.3 2.9 27 122-149 3-30 (125)
217 cd08362 BphC5-RrK37_N_like N-t 25.3 1.1E+02 0.0023 19.9 3.3 30 120-150 3-33 (120)
218 cd07264 Glo_EDI_BRP_like_15 Th 25.0 1.3E+02 0.0029 19.5 3.7 24 124-148 4-28 (125)
219 cd07252 BphC1-RGP6_N_like N-te 24.8 75 0.0016 20.9 2.4 28 121-149 3-31 (120)
220 PF05063 MT-A70: MT-A70 ; Int 24.6 2.3E+02 0.0049 20.5 5.1 29 123-151 47-77 (176)
221 cd07233 Glyoxalase_I Glyoxalas 24.4 1.4E+02 0.003 19.2 3.7 26 123-149 3-29 (121)
222 PF07315 DUF1462: Protein of u 24.4 2.1E+02 0.0045 18.6 4.4 15 61-75 67-81 (93)
223 cd08348 BphC2-C3-RGP6_C_like T 24.2 1.1E+02 0.0024 20.4 3.2 28 122-150 3-31 (134)
224 PRK14831 undecaprenyl pyrophos 24.2 95 0.0021 24.2 3.1 36 97-132 41-77 (249)
225 PF03376 Adeno_E3B: Adenovirus 23.9 35 0.00076 20.4 0.5 13 96-108 53-65 (67)
226 cd07263 Glo_EDI_BRP_like_16 Th 23.8 82 0.0018 20.1 2.5 18 133-150 10-28 (119)
227 PRK10975 TDP-fucosamine acetyl 23.7 1.6E+02 0.0035 21.4 4.3 34 120-153 3-36 (194)
228 cd07237 BphC1-RGP6_C_like C-te 23.7 1.5E+02 0.0032 20.8 3.9 29 120-149 9-38 (154)
229 TIGR00055 uppS undecaprenyl di 23.7 1.2E+02 0.0025 23.4 3.5 34 97-130 20-53 (226)
230 cd08347 PcpA_C_like C-terminal 23.4 98 0.0021 21.9 2.9 30 120-150 1-31 (157)
231 PRK14837 undecaprenyl pyrophos 23.4 1.2E+02 0.0026 23.4 3.5 35 96-130 26-60 (230)
232 cd07249 MMCE Methylmalonyl-CoA 22.9 89 0.0019 20.4 2.5 27 122-149 2-29 (128)
233 TIGR00068 glyox_I lactoylgluta 22.9 1E+02 0.0022 21.3 3.0 29 120-149 17-46 (150)
234 COG3543 Uncharacterized conser 22.3 1.3E+02 0.0029 20.9 3.1 38 95-132 12-50 (135)
235 PLN02300 lactoylglutathione ly 22.3 73 0.0016 25.0 2.3 29 120-149 24-53 (286)
236 COG0623 FabI Enoyl-[acyl-carri 22.1 1.5E+02 0.0033 23.1 3.7 43 88-130 144-187 (259)
237 cd09011 Glo_EDI_BRP_like_23 Th 22.1 2E+02 0.0043 18.7 4.2 24 124-148 6-30 (120)
238 cd07262 Glo_EDI_BRP_like_19 Th 22.1 1.4E+02 0.0031 19.4 3.4 27 123-150 3-33 (123)
239 cd07256 HPCD_C_class_II C-term 22.1 96 0.0021 21.9 2.7 27 121-148 4-31 (161)
240 cd07244 FosA FosA, a Fosfomyci 21.8 1.9E+02 0.0042 18.8 4.0 28 121-149 2-30 (121)
241 PF13963 Transpos_assoc: Trans 21.5 40 0.00087 20.9 0.5 10 194-203 37-46 (77)
242 cd08361 PpCmtC_N N-terminal do 21.1 1.4E+02 0.0031 19.7 3.3 27 122-149 8-35 (124)
243 cd08355 Glo_EDI_BRP_like_14 Th 20.9 1.1E+02 0.0024 19.9 2.7 18 133-150 11-29 (122)
244 PF06564 YhjQ: YhjQ protein; 20.9 1.3E+02 0.0029 23.3 3.3 43 102-146 11-54 (243)
245 cd09013 BphC-JF8_N_like N-term 20.5 1.2E+02 0.0026 19.8 2.8 28 121-149 7-35 (121)
246 COG3620 Predicted transcriptio 20.5 3.5E+02 0.0076 19.8 5.1 41 34-76 132-175 (187)
247 PRK14829 undecaprenyl pyrophos 20.3 1.3E+02 0.0028 23.3 3.2 36 97-132 35-71 (243)
248 cd00475 CIS_IPPS Cis (Z)-Isopr 20.3 1.5E+02 0.0032 22.7 3.4 34 97-130 21-54 (221)
249 cd07043 STAS_anti-anti-sigma_f 20.2 2.3E+02 0.0049 17.5 4.1 41 104-147 54-94 (99)
250 PF01255 Prenyltransf: Putativ 20.1 1.1E+02 0.0025 23.2 2.8 36 97-132 15-51 (223)
251 cd07266 HPCD_N_class_II N-term 20.0 1.3E+02 0.0028 19.5 2.9 28 121-149 5-33 (121)
No 1
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.93 E-value=4.1e-24 Score=148.81 Aligned_cols=151 Identities=56% Similarity=0.932 Sum_probs=133.8
Q ss_pred CCCeEEeecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCe-EEEEEEEEecCCCCCceEEEEEEEe
Q 028771 17 PPEIEYVSYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGK-CVGTVVCKMGEHRSTFRGYIAMLVV 95 (204)
Q Consensus 17 ~~~~~~~~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-ivG~~~~~~~~~~~~~~~~i~~l~V 95 (204)
...++...+.....++.|.++....+.+++|...+..+...++..++++.+++. .||.+........+...++|..++|
T Consensus 13 ~~~i~~~~~~~~~~l~~im~Li~k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV 92 (165)
T KOG3139|consen 13 AEVIRPSLYPAEEYLADIMRLIDKDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAV 92 (165)
T ss_pred eeeeeeecchHHHHHHHHHHHHhhhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEe
Confidence 344555556666667789999999999999999999999999999999998766 7998888766554456799999999
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCCcceeeEeccC
Q 028771 96 IKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLF 167 (204)
Q Consensus 96 ~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~~~l 167 (204)
+++|||+|||++|++.+++.++..|+..+.|++...|.+|.++|+++||+..++...||.+|.|++.|+..+
T Consensus 93 ~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYlng~dA~rl~L~~ 164 (165)
T KOG3139|consen 93 DSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYLNGMDALRLKLFF 164 (165)
T ss_pred chhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEEECCcceEEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999988754
No 2
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.86 E-value=2.8e-20 Score=129.72 Aligned_cols=130 Identities=25% Similarity=0.334 Sum_probs=110.1
Q ss_pred ChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHH
Q 028771 30 HLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELV 109 (204)
Q Consensus 30 d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll 109 (204)
|++.+.++....+..+++...+...+.......+++++++++||++.+..... ..++..++|+|+|||+|+|++|+
T Consensus 1 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~----~~~i~~~~v~~~~rg~G~g~~ll 76 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVLD----EAHILNIAVKPEYQGQGIGRALL 76 (131)
T ss_pred CHHHHHHHHHhhCCCCCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEecCC----CeEEEEEEECHHHcCCCHHHHHH
Confidence 57889999999998888888888777655556666777999999999765432 35688899999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCC-cceeeE
Q 028771 110 TRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNG-VDAFRL 163 (204)
Q Consensus 110 ~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~-~~~~~m 163 (204)
+++++++.+.+++.+.+.+.+.|.+++.||+++||+.++....++..+ .+.++|
T Consensus 77 ~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~ 131 (131)
T TIGR01575 77 RELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYPDPGEDAIVM 131 (131)
T ss_pred HHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccccccccCCCcccccC
Confidence 999999999899999999999999999999999999999888776554 455544
No 3
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.84 E-value=5.1e-19 Score=126.18 Aligned_cols=139 Identities=21% Similarity=0.244 Sum_probs=109.9
Q ss_pred ecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCC
Q 028771 24 SYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRG 103 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~G 103 (204)
+..+.+|++.+.++.......+|....+... .......+++..+|++||++.+..... .+.+..++|+|+|||+|
T Consensus 5 R~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~i~v~~~~rg~G 79 (146)
T PRK09491 5 SSLTPADLPAAYHIEQRAHAFPWSEKTFASN-QGERYLNLKLTVNGQMAAFAITQVVLD----EATLFNIAVDPDYQRQG 79 (146)
T ss_pred hcCChhhhHHHHHHHHhcCCCCCCHHHHHHH-HhcCceEEEEEECCeEEEEEEEEeecC----ceEEEEEEECHHHccCC
Confidence 4446899999999988776667766544432 122333455668899999998865432 25677899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc--C-CcceeeEeccC
Q 028771 104 IATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL--N-GVDAFRLKLLF 167 (204)
Q Consensus 104 ig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~--~-~~~~~~m~~~l 167 (204)
+|+.+++.+++.+.+.++..+.+.+...|.+|++||+|+||+..+....++. + ..|.+.|.+.+
T Consensus 80 ~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~d~~~~~~~~ 146 (146)
T PRK09491 80 LGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADGREDAIIMALPL 146 (146)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCCceeEEEEeccC
Confidence 9999999999999888999999999999999999999999999988877753 2 24888887754
No 4
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.84 E-value=1.1e-19 Score=129.08 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=99.2
Q ss_pred ecCCCCChHHHHHHHHhhcCCCchHH----HHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCC--CCceEEEEEEEeCc
Q 028771 24 SYGGEHHLPLIMNLVDQELSEPYSIF----TYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHR--STFRGYIAMLVVIK 97 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~--~~~~~~i~~l~V~p 97 (204)
+.++.+|++.+.++........+... .+...+......++++.++|++||++.+...... ....++|..++|+|
T Consensus 7 r~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p 86 (144)
T PRK10146 7 RPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMP 86 (144)
T ss_pred eeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheeheeEECH
Confidence 44569999999999887665444322 2333333445567888899999999998754321 22245788999999
Q ss_pred ccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEee
Q 028771 98 PYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 98 ~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
++||+|+|+.|+.++++.+++.|++.+.|.+...|.+|++||+++||+..+
T Consensus 87 ~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 87 QARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 999999999999999999999999999999999999999999999998765
No 5
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.82 E-value=3.8e-19 Score=130.55 Aligned_cols=146 Identities=27% Similarity=0.401 Sum_probs=121.7
Q ss_pred EeecCCCCChH--HHHHHHHhhcC--CCchHHHHHHHHhhCCCeEEEEEEC---C----eEEEEEEEEecCCCC--CceE
Q 028771 22 YVSYGGEHHLP--LIMNLVDQELS--EPYSIFTYRYFVYLWPHLSFLAFHK---G----KCVGTVVCKMGEHRS--TFRG 88 (204)
Q Consensus 22 ~~~~~~~~d~~--~i~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~---g----~ivG~~~~~~~~~~~--~~~~ 88 (204)
.++.....|+. .+..+....+. .+|+...+...+...+...+++..+ + +++|++......... ...+
T Consensus 13 ~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 92 (177)
T COG0456 13 TIREAINKDLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEG 92 (177)
T ss_pred ehhhhhhcccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCccccCcc
Confidence 33444577777 88888888887 6899999999999989888888863 4 599999886433221 1258
Q ss_pred EEEEEEeCcccccCCHHHHHHHHHHHHHHHcCC-cEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCCcc-eeeEecc
Q 028771 89 YIAMLVVIKPYRGRGIATELVTRSIKVMMESGC-EEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVD-AFRLKLL 166 (204)
Q Consensus 89 ~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~-~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~-~~~m~~~ 166 (204)
+|..++|+|+|||+|||++|++++++.+.+.+. ..+.|.|..+|.+|++||+++||+..++...+|.++.+ ++.|.+.
T Consensus 93 ~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~~~~~~a~~~~~~ 172 (177)
T COG0456 93 HIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYADGNGDALLMLKM 172 (177)
T ss_pred EEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhccCCcchhHHHHHh
Confidence 899999999999999999999999999999886 89999999999999999999999999999999988764 6666554
Q ss_pred C
Q 028771 167 F 167 (204)
Q Consensus 167 l 167 (204)
.
T Consensus 173 ~ 173 (177)
T COG0456 173 L 173 (177)
T ss_pred h
Confidence 4
No 6
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.81 E-value=7.2e-18 Score=121.99 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=107.3
Q ss_pred eEEeecCCCCChHHHHHHHHhhc-------CCCchHHHHHHHHhh-CCCeEEEEEECCeEEEEEEEEecCCCC-CceEEE
Q 028771 20 IEYVSYGGEHHLPLIMNLVDQEL-------SEPYSIFTYRYFVYL-WPHLSFLAFHKGKCVGTVVCKMGEHRS-TFRGYI 90 (204)
Q Consensus 20 ~~~~~~~~~~d~~~i~~l~~~~~-------~~~~~~~~~~~~~~~-~~~~~~v~~~~g~ivG~~~~~~~~~~~-~~~~~i 90 (204)
+.+++ .+.+|++.+.++..+.. ....+.+.+...+.. .....+++..+|++||++.+.....+. ...+++
T Consensus 4 i~lr~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~ 82 (162)
T PRK10140 4 IVIRH-AETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADF 82 (162)
T ss_pred cEEEe-cchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEE
Confidence 44444 45899999999987531 112233444444433 334567888899999999987643221 223455
Q ss_pred EEEEeCcccccCCHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc-CC--cceeeEec
Q 028771 91 AMLVVIKPYRGRGIATELVTRSIKVMME-SGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL-NG--VDAFRLKL 165 (204)
Q Consensus 91 ~~l~V~p~~Rg~Gig~~ll~~~~~~~~~-~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~--~~~~~m~~ 165 (204)
+ ++|+|+|||+|||+.|++.+++++++ .+...+.+.+.++|.+|++||+|+||+..+....++. ++ .|.+.|.+
T Consensus 83 ~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~d~~~~~~ 160 (162)
T PRK10140 83 G-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR 160 (162)
T ss_pred E-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEEEEEEEEe
Confidence 4 89999999999999999999999998 5999999999999999999999999999999776643 33 36767665
No 7
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.80 E-value=4.2e-18 Score=133.10 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=113.9
Q ss_pred CCCeEEeecCCCCChHHHHHHHHhhcCC---Cch-HHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEE
Q 028771 17 PPEIEYVSYGGEHHLPLIMNLVDQELSE---PYS-IFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAM 92 (204)
Q Consensus 17 ~~~~~~~~~~~~~d~~~i~~l~~~~~~~---~~~-~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~ 92 (204)
+..+.++. ++.+|++.+.+++...+.. ++. .+.+...+. ....+|+++.+|++||++.+.... ....++|..
T Consensus 113 ~~~~~IR~-a~~~D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~~-~~~~~~v~~~~g~iVG~~~~~~~~--~~~~~eI~~ 188 (266)
T TIGR03827 113 PEGFTLRI-ATEDDADAMAALYRKVFPTYPFPIHDPAYLLETMK-SNVVYFGVEDGGKIIALASAEMDP--ENGNAEMTD 188 (266)
T ss_pred CCceEEEE-CCHHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc-CCcEEEEEEECCEEEEEEEEecCC--CCCcEEEEE
Confidence 34455544 5699999999999987642 222 233333332 345678888999999999875432 233588999
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecc-cCC--cceeeEeccC
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYY-LNG--VDAFRLKLLF 167 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~-~~~--~~~~~m~~~l 167 (204)
++|+|+|||+|+|+.||+.+++++++.|+..+.+.+...|.+|+++|+|+||+.+++..+.. .+| .|..++.|.|
T Consensus 189 i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k~l 266 (266)
T TIGR03827 189 FATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYKQL 266 (266)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999987653 344 5777776653
No 8
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.79 E-value=2.6e-19 Score=124.00 Aligned_cols=146 Identities=31% Similarity=0.488 Sum_probs=125.2
Q ss_pred ecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEE-ECCeEEEEEEEEecCCC--CCceEEEEEEEeCcccc
Q 028771 24 SYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAF-HKGKCVGTVVCKMGEHR--STFRGYIAMLVVIKPYR 100 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~ivG~~~~~~~~~~--~~~~~~i~~l~V~p~~R 100 (204)
+-++.+|+-.+.....-++++.+....+......++...||+. .+|+|||++......++ ....++|..++|...||
T Consensus 5 R~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~R 84 (193)
T KOG3235|consen 5 RRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYR 84 (193)
T ss_pred ccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHH
Confidence 3445666666666655666777778888888888999999999 68999999988766533 34468999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHH-HCCCEEeeEEeecccCCcceeeEeccCCC
Q 028771 101 GRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYG-RLGFIRAKRLFRYYLNGVDAFRLKLLFPC 169 (204)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~-k~GF~~~~~~~~~~~~~~~~~~m~~~l~~ 169 (204)
+.|||+.||.+......+. +.+.+.|.|..+|.+|+.+|+ .+||+.......||.+|+|++.|.+.|..
T Consensus 85 rlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYadGedAyaM~~~L~~ 155 (193)
T KOG3235|consen 85 RLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADGEDAYAMRKDLSV 155 (193)
T ss_pred HhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecccccccccHHHHHHHHHHHH
Confidence 9999999999998888876 889999999999999999999 89999999999999999999999999864
No 9
>PRK03624 putative acetyltransferase; Provisional
Probab=99.79 E-value=7.6e-18 Score=118.60 Aligned_cols=123 Identities=26% Similarity=0.414 Sum_probs=96.9
Q ss_pred eecCCCCChHHHHHHHHhhcC-CCchH--HHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCccc
Q 028771 23 VSYGGEHHLPLIMNLVDQELS-EPYSI--FTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPY 99 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~ 99 (204)
++..+.+|++.+.+++..... .+|.. ..+...+......++++.+++++||++.+.... ...++..++|+|+|
T Consensus 5 ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~----~~~~i~~i~v~p~~ 80 (140)
T PRK03624 5 IRVFRQADFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYDG----HRGWAYYLAVHPDF 80 (140)
T ss_pred EEEcccccHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeeccC----CCceEEEEEECHHH
Confidence 345568999999999887621 23322 223333334455678888899999999875432 13567789999999
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 100 RGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 100 Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
||+|+|+.|+..+++.+++.|++.+.+.+.+.|.++++||+|+||+..+.
T Consensus 81 rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 81 RGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred hCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 99999999999999999999999999999999999999999999998765
No 10
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.78 E-value=5.9e-18 Score=108.96 Aligned_cols=81 Identities=27% Similarity=0.388 Sum_probs=75.2
Q ss_pred EEECCeEEEEEEEEecCCCC--CceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHC
Q 028771 65 AFHKGKCVGTVVCKMGEHRS--TFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRL 142 (204)
Q Consensus 65 ~~~~g~ivG~~~~~~~~~~~--~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~ 142 (204)
++++|++||++.+.+..... ...++|..++|+|+|||+|||+.|++++++.+++.|+..+.+.+.++|.++++||+|+
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 57899999999998876542 4689999999999999999999999999999999999999999999999999999999
Q ss_pred CCE
Q 028771 143 GFI 145 (204)
Q Consensus 143 GF~ 145 (204)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 11
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.78 E-value=1.1e-17 Score=120.86 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=96.3
Q ss_pred ecCCCCChHHHHHHHHhhcCCCchH-HHHHHHHhhCCCeEEEEE-ECCeEEEEEEEEecCCCCCceEEEEEEEeCccccc
Q 028771 24 SYGGEHHLPLIMNLVDQELSEPYSI-FTYRYFVYLWPHLSFLAF-HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRG 101 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~-~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg 101 (204)
+..+.+|++.+.++..+.....+.. ..+...........+++. .+|++||++.+..... ....+++..++|+|++||
T Consensus 2 R~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~-~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 2 RPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPD-RPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCC-CCCeEEEEEEEEChHhcc
Confidence 4456899999999998864322211 111122233445567777 5789999987654433 233578889999999999
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 102 RGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
+|+|++|++.+++++++.++..+.+.|.+.|.+|++||+|+||+.....
T Consensus 81 ~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~ 129 (157)
T TIGR02406 81 KGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVHL 129 (157)
T ss_pred CcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCCe
Confidence 9999999999999999999999999999999999999999999875543
No 12
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.78 E-value=1.5e-17 Score=123.93 Aligned_cols=129 Identities=20% Similarity=0.260 Sum_probs=98.0
Q ss_pred EeecCCCCChHHHHHHHHhhcC-----CCch-H----HHHHHHHh----hC-CCeEEE-EEECCeEEEEEEEEecCCCCC
Q 028771 22 YVSYGGEHHLPLIMNLVDQELS-----EPYS-I----FTYRYFVY----LW-PHLSFL-AFHKGKCVGTVVCKMGEHRST 85 (204)
Q Consensus 22 ~~~~~~~~d~~~i~~l~~~~~~-----~~~~-~----~~~~~~~~----~~-~~~~~v-~~~~g~ivG~~~~~~~~~~~~ 85 (204)
.++..+.+|++.+.++++..+. .+|. . ..+...+. .. ....++ +..+|++||++.+......
T Consensus 45 ~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~~~-- 122 (191)
T TIGR02382 45 GARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELNDT-- 122 (191)
T ss_pred cceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecCCC--
Confidence 4455669999999999998753 1221 1 11222221 11 223343 3468899999998765332
Q ss_pred ceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeec
Q 028771 86 FRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRY 153 (204)
Q Consensus 86 ~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~ 153 (204)
.++|+.++|+|++||+|+|++|++++++++++.|+..|.+.|..+|.+|++||+|+||+.++.....
T Consensus 123 -~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~~~~ 189 (191)
T TIGR02382 123 -DARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTAYWL 189 (191)
T ss_pred -ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccceeee
Confidence 4689999999999999999999999999999889999999999999999999999999998875443
No 13
>PHA00673 acetyltransferase domain containing protein
Probab=99.77 E-value=1.9e-17 Score=117.18 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=102.2
Q ss_pred EEeecCCCCChHHHHHHHHhhcC----------CCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCC---CCce
Q 028771 21 EYVSYGGEHHLPLIMNLVDQELS----------EPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHR---STFR 87 (204)
Q Consensus 21 ~~~~~~~~~d~~~i~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~---~~~~ 87 (204)
+...|++.+|++.|.+|+.+... .++.. .+...........++++++|++||++.+...+.. +...
T Consensus 7 ~~~~~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~-af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~ 85 (154)
T PHA00673 7 RRVAFAELADAPTFASLCAEYAHESANADLAGRAPDHH-AYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLI 85 (154)
T ss_pred HHHhhccHhhHHHHHHHHHhcccccccccccccchhHH-HHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccE
Confidence 34567899999999999887211 11112 2555556667778888899999999988777643 4467
Q ss_pred EEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 88 GYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 88 ~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
+.|..++|+|++||+|||++|++++++++++.|+..++++..|+. ..+.||.++|++.+.+
T Consensus 86 ~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~-~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 86 GTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEG-RLVQLLPAAGYRETNR 146 (154)
T ss_pred EEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCc-cchHHHHhCCchhhch
Confidence 899999999999999999999999999999999999999887753 5899999999998653
No 14
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.77 E-value=7.7e-17 Score=120.32 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=111.3
Q ss_pred cccCCCCeEEeecCCCCChHHHHHHHHhh--cCCCch---------HHHH-------HHHHhhCCCeEEEEEE--CCeEE
Q 028771 13 AEFDPPEIEYVSYGGEHHLPLIMNLVDQE--LSEPYS---------IFTY-------RYFVYLWPHLSFLAFH--KGKCV 72 (204)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~~i~~l~~~~--~~~~~~---------~~~~-------~~~~~~~~~~~~v~~~--~g~iv 72 (204)
+...+.++.++... ++|.+.+.+++++. +..+|. ...+ ...........|++.. ++++|
T Consensus 11 ~~l~t~rl~LR~~~-~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 89 (194)
T PRK10809 11 VRLTTDRLVVRLVH-ERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEII 89 (194)
T ss_pred eeeccCcEEEEeCC-HHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEE
Confidence 34566777777666 88999999988752 211111 1111 1111222334555543 67999
Q ss_pred EEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 73 GTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 73 G~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
|.+.+..........++|+ +.|.|+|||+|+|+.++..+++++++. |++++.+.|.+.|.+|+++|+|+||+.++...
T Consensus 90 G~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~ 168 (194)
T PRK10809 90 GVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAK 168 (194)
T ss_pred EEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeec
Confidence 9999876543222346777 789999999999999999999999985 99999999999999999999999999999887
Q ss_pred eccc-CC--cceeeEeccC
Q 028771 152 RYYL-NG--VDAFRLKLLF 167 (204)
Q Consensus 152 ~~~~-~~--~~~~~m~~~l 167 (204)
.++. +| .|.++|.+..
T Consensus 169 ~~~~~~g~~~d~~~~~~~~ 187 (194)
T PRK10809 169 DYLLIDGQWRDHVLTALTT 187 (194)
T ss_pred cccccCCeEEEEEEeeeeh
Confidence 7643 55 4777777654
No 15
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.77 E-value=5.3e-17 Score=138.02 Aligned_cols=136 Identities=19% Similarity=0.152 Sum_probs=110.0
Q ss_pred CCeEEeecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEE--CCeEEEEEEEEecC---CCCCceEEEEE
Q 028771 18 PEIEYVSYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFH--KGKCVGTVVCKMGE---HRSTFRGYIAM 92 (204)
Q Consensus 18 ~~~~~~~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~g~ivG~~~~~~~~---~~~~~~~~i~~ 92 (204)
..+.+++.....|++.+.+++......+++...+...+......+|++++ +|++||++.+.... ......++|..
T Consensus 81 ~g~~IR~~~~~~D~~~I~~L~~~~~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~ 160 (547)
T TIGR03103 81 RGFTVRRLRGPADVDAINRLYAARGMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWC 160 (547)
T ss_pred CCcEEEeCCChhHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEE
Confidence 44778777778999999999999765566666665555455567788875 69999999754321 11223468999
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeec
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRY 153 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~ 153 (204)
|+|+|+|||+|||++|++++++++++.|+..+.|.+..+|.+|++||+|+||+.+......
T Consensus 161 l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~~ 221 (547)
T TIGR03103 161 LAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFALK 221 (547)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999988765543
No 16
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=7.5e-17 Score=115.73 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=118.3
Q ss_pred eecCCCCChHHHHHHHHhhcC--------CCchHHHHHHHHhhCC---CeEEEEEEC-CeEEEEEEEEecCCCCC-ceEE
Q 028771 23 VSYGGEHHLPLIMNLVDQELS--------EPYSIFTYRYFVYLWP---HLSFLAFHK-GKCVGTVVCKMGEHRST-FRGY 89 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~--------~~~~~~~~~~~~~~~~---~~~~v~~~~-g~ivG~~~~~~~~~~~~-~~~~ 89 (204)
++.++.+|++.|.++++.... ++.+.+.+..++.... ...+|++.+ |+++|++.+.+....+. ....
T Consensus 4 ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tv 83 (169)
T COG1247 4 IRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTV 83 (169)
T ss_pred EecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEE
Confidence 456779999999999998764 3556677776665532 256667655 99999999987754422 1223
Q ss_pred EEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeec-ccCC--cceeeEecc
Q 028771 90 IAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRY-YLNG--VDAFRLKLL 166 (204)
Q Consensus 90 i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~-~~~~--~~~~~m~~~ 166 (204)
-..++|+|++||+|+|++|++.++..+...|+..+...+..+|.+|+++.+++||+..+..+.. ...| -|.++|.+.
T Consensus 84 e~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~~~~ 163 (169)
T COG1247 84 ELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLMQLL 163 (169)
T ss_pred EEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeeeehh
Confidence 3459999999999999999999999999999999999999999999999999999999998776 3344 499999988
Q ss_pred CCCC
Q 028771 167 FPCP 170 (204)
Q Consensus 167 l~~~ 170 (204)
+..+
T Consensus 164 l~~~ 167 (169)
T COG1247 164 LEEG 167 (169)
T ss_pred hccc
Confidence 8643
No 17
>PTZ00330 acetyltransferase; Provisional
Probab=99.77 E-value=8.3e-17 Score=114.65 Aligned_cols=126 Identities=25% Similarity=0.338 Sum_probs=93.9
Q ss_pred eEEeecCCCCChHHHHHHHHhhcCCC-chHHHHHHHHhh---CC--CeEEEEEECCeEEEEEEEEecCC---CCCceEEE
Q 028771 20 IEYVSYGGEHHLPLIMNLVDQELSEP-YSIFTYRYFVYL---WP--HLSFLAFHKGKCVGTVVCKMGEH---RSTFRGYI 90 (204)
Q Consensus 20 ~~~~~~~~~~d~~~i~~l~~~~~~~~-~~~~~~~~~~~~---~~--~~~~v~~~~g~ivG~~~~~~~~~---~~~~~~~i 90 (204)
+.+ +..+++|++.+.+++......+ .+.+....+... .. ...+++.++|++||++.+..... .....++|
T Consensus 7 ~~i-r~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i 85 (147)
T PTZ00330 7 LEL-RDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHI 85 (147)
T ss_pred EEE-EEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEE
Confidence 454 4456999999999988765433 344444433322 11 23455557899999998865432 12235789
Q ss_pred EEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 91 AMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 91 ~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
..++|+|+|||+|||+.|+.++++++++.++..+.+.+ |.+|++||+++||+....
T Consensus 86 ~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~---n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 86 EDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDC---TEDMVAFYKKLGFRACER 141 (147)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEec---ChHHHHHHHHCCCEEece
Confidence 99999999999999999999999999998888877654 778999999999998764
No 18
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.76 E-value=9.6e-17 Score=119.85 Aligned_cols=124 Identities=22% Similarity=0.333 Sum_probs=96.5
Q ss_pred cCCCCChHHHHHHHHhhcC-----CCc-hH----HHHHHHHhh-----CCCeEEEEE-ECCeEEEEEEEEecCCCCCceE
Q 028771 25 YGGEHHLPLIMNLVDQELS-----EPY-SI----FTYRYFVYL-----WPHLSFLAF-HKGKCVGTVVCKMGEHRSTFRG 88 (204)
Q Consensus 25 ~~~~~d~~~i~~l~~~~~~-----~~~-~~----~~~~~~~~~-----~~~~~~v~~-~~g~ivG~~~~~~~~~~~~~~~ 88 (204)
..+++|++.+.++.+..+. .+| +. ..+..++.. ....++++. ++|++||++.+....+. .+
T Consensus 51 ~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~~~---~~ 127 (194)
T PRK10975 51 VATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELNDT---DA 127 (194)
T ss_pred cCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecCCC---ce
Confidence 5578999999999887643 122 21 223233222 122455555 57899999988754322 47
Q ss_pred EEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 89 YIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 89 ~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
+|+.++|.|+|||+|+|++|+..+++++++.|++.+.+.+..+|.+|++||+|+||+.+++..
T Consensus 128 ~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 128 RIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred EEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 899999999999999999999999999999999999999999999999999999999988764
No 19
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.75 E-value=1.2e-16 Score=114.81 Aligned_cols=130 Identities=23% Similarity=0.302 Sum_probs=99.7
Q ss_pred ecCCCCChHHHHHHHHhhc-----CCC---chHHHHHHHHh----hCCCeEEEEEE-CCeEEEEEEEEecCCCCCceEEE
Q 028771 24 SYGGEHHLPLIMNLVDQEL-----SEP---YSIFTYRYFVY----LWPHLSFLAFH-KGKCVGTVVCKMGEHRSTFRGYI 90 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~-----~~~---~~~~~~~~~~~----~~~~~~~v~~~-~g~ivG~~~~~~~~~~~~~~~~i 90 (204)
+..+.+|++.+.+++++.. ... .+......++. ......+++.. +|++||++.+..... ....+++
T Consensus 2 R~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~-~~~~~~~ 80 (155)
T PF13420_consen 2 RPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDP-YNHTAEL 80 (155)
T ss_dssp EE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSS-GTTEEEE
T ss_pred CCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeec-cCCEEEE
Confidence 4566899999999998532 111 23334444433 24566777776 999999999987644 4446777
Q ss_pred EEEEeCcccccCCHHHHHHHHHHHHH-HHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc
Q 028771 91 AMLVVIKPYRGRGIATELVTRSIKVM-MESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL 155 (204)
Q Consensus 91 ~~l~V~p~~Rg~Gig~~ll~~~~~~~-~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~ 155 (204)
+ ++|.|++|++|+|+.|+..+++++ .+.|++.+.+.+...|.+|++||+++||+.+++.++...
T Consensus 81 ~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~ 145 (155)
T PF13420_consen 81 S-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIF 145 (155)
T ss_dssp E-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred e-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEE
Confidence 7 788899999999999999999999 777999999999999999999999999999999887744
No 20
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.75 E-value=3.5e-16 Score=115.29 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=112.5
Q ss_pred cCCCCeEEeecCCCCChHHHHHHHHh--hc-------C-CCchHHHHHHHHhh-------CCCeEEEEEECCeEEEEEEE
Q 028771 15 FDPPEIEYVSYGGEHHLPLIMNLVDQ--EL-------S-EPYSIFTYRYFVYL-------WPHLSFLAFHKGKCVGTVVC 77 (204)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~~i~~l~~~--~~-------~-~~~~~~~~~~~~~~-------~~~~~~v~~~~g~ivG~~~~ 77 (204)
..+.++.++.+. .+|++.+.++++. .. . .+.+.+....++.. .....|++..+|++||++.+
T Consensus 6 ~~t~rl~Lr~~~-~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l 84 (179)
T PRK10151 6 PVSESLELHAVD-ESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSF 84 (179)
T ss_pred EeCCcEEEEeCC-HHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEE
Confidence 355677777666 8999999998742 11 1 11233433333322 11236777789999999988
Q ss_pred EecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeec-cc
Q 028771 78 KMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRY-YL 155 (204)
Q Consensus 78 ~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~-~~ 155 (204)
...... ...++|+ +.+.|+|||+|+|+.++..+++++++. +++++.+.+.+.|.+|+++|+|+||+.+++.... +.
T Consensus 85 ~~~~~~-~~~~~ig-~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~ 162 (179)
T PRK10151 85 NRIEPL-NKTAYIG-YWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYL 162 (179)
T ss_pred EeeccC-CCceEEE-EEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEE
Confidence 665322 2357787 679999999999999999999999875 8999999999999999999999999999998765 33
Q ss_pred CC--cceeeEeccCC
Q 028771 156 NG--VDAFRLKLLFP 168 (204)
Q Consensus 156 ~~--~~~~~m~~~l~ 168 (204)
+| .|.++|.+.+.
T Consensus 163 ~g~~~D~~~~~~~~~ 177 (179)
T PRK10151 163 NGAYDDVNLYARIID 177 (179)
T ss_pred CCEEEEEEEEEEeec
Confidence 44 58888887653
No 21
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.75 E-value=9.2e-17 Score=111.74 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=90.7
Q ss_pred ecCCCCChHHHHHHHHhhcCCCchHHH-HHH-HHhhCCCeEEEEEECCeEEEEEEEEecC----CCCCceEEEEEEEeCc
Q 028771 24 SYGGEHHLPLIMNLVDQELSEPYSIFT-YRY-FVYLWPHLSFLAFHKGKCVGTVVCKMGE----HRSTFRGYIAMLVVIK 97 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~v~~~~g~ivG~~~~~~~~----~~~~~~~~i~~l~V~p 97 (204)
+..+++|++++.++++.+|....+... ... .....+..+++++++|++||.+.+.+.. +.....++|..++|+|
T Consensus 3 R~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p 82 (127)
T PF13527_consen 3 RPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDP 82 (127)
T ss_dssp EEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-G
T ss_pred eECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECH
Confidence 445689999999999999987665541 111 1112356899999999999999997762 2234578999999999
Q ss_pred ccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEe
Q 028771 98 PYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRA 147 (204)
Q Consensus 98 ~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~ 147 (204)
+|||+|+|++|++++++.+++.|+..+.+.. . ...||+++||+.+
T Consensus 83 ~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~---~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 83 EYRGRGLGRQLMRALLERARERGVPFIFLFP--S---SPPFYRRFGFEYA 127 (127)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---S---SHHHHHHTTEEEE
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--C---ChhhhhcCCCEEC
Confidence 9999999999999999999999988777755 2 4689999999863
No 22
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.74 E-value=2.2e-16 Score=109.13 Aligned_cols=136 Identities=17% Similarity=0.116 Sum_probs=105.1
Q ss_pred EeecCCCCChHHHHHHHHhhcC-------CCchHHHHHH--HHhhCCCeEEEEEE---CCeEEEEEEEEecCCC--CCce
Q 028771 22 YVSYGGEHHLPLIMNLVDQELS-------EPYSIFTYRY--FVYLWPHLSFLAFH---KGKCVGTVVCKMGEHR--STFR 87 (204)
Q Consensus 22 ~~~~~~~~d~~~i~~l~~~~~~-------~~~~~~~~~~--~~~~~~~~~~v~~~---~g~ivG~~~~~~~~~~--~~~~ 87 (204)
.++.+++.|.+.+..++++.-. ...+...+.. +++..-..++++.- ++.++|++.+...... ....
T Consensus 5 ~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~ 84 (163)
T KOG3216|consen 5 RIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQG 84 (163)
T ss_pred EEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccccce
Confidence 3466779999999999997432 1223333333 33343345555553 7899999988776443 4457
Q ss_pred EEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCC
Q 028771 88 GYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNG 157 (204)
Q Consensus 88 ~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~ 157 (204)
.||..++|.|+|||+|+|+.|++.+.+.|.+.|+.++.+-|..-|.+|+.||++.|++......-+..+|
T Consensus 85 iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~W~l~r~~G 154 (163)
T KOG3216|consen 85 IYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKEWRLFRRTG 154 (163)
T ss_pred EEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccceeEEEEech
Confidence 8999999999999999999999999999999999999999999999999999999999887644443344
No 23
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.74 E-value=1.3e-16 Score=109.25 Aligned_cols=104 Identities=32% Similarity=0.463 Sum_probs=80.4
Q ss_pred ChHHHHHHHHhhcCC-----C--------chHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeC
Q 028771 30 HLPLIMNLVDQELSE-----P--------YSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVI 96 (204)
Q Consensus 30 d~~~i~~l~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~ 96 (204)
|++++.+++.+.+.. + ++.+.+...+.......|+++++|++||++.+. . ..+|..++|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~--~-----~~~i~~l~v~ 73 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE--P-----DGEISHLYVL 73 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE--T-----CEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc--C-----CCeEEEEEEC
Confidence 677788887775431 1 234455555555557899999999999999985 1 2448999999
Q ss_pred cccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCC
Q 028771 97 KPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGF 144 (204)
Q Consensus 97 p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF 144 (204)
|+|||+|||++|++.+++.+++ |++.+.+. .|..|.+||+++||
T Consensus 74 p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 74 PEYRGRGIGRALLDAAEKEAKD-GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred hhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE---eCHHHHHHHHhCCC
Confidence 9999999999999999999966 88877766 78899999999998
No 24
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.74 E-value=2.4e-16 Score=113.11 Aligned_cols=128 Identities=22% Similarity=0.325 Sum_probs=96.5
Q ss_pred ecCC-CCChHHHHHHHHhhc-----CCCch---HHHHHHHHh-hCCCeEEEEEECCeEEEEEEEEecCCC---CCceEEE
Q 028771 24 SYGG-EHHLPLIMNLVDQEL-----SEPYS---IFTYRYFVY-LWPHLSFLAFHKGKCVGTVVCKMGEHR---STFRGYI 90 (204)
Q Consensus 24 ~~~~-~~d~~~i~~l~~~~~-----~~~~~---~~~~~~~~~-~~~~~~~v~~~~g~ivG~~~~~~~~~~---~~~~~~i 90 (204)
+.++ .+|++.|.+++++.. ...++ .+.+...+. ......+|++.+|+++|++.+...... ......+
T Consensus 2 R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~ 81 (152)
T PF13523_consen 2 RPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGI 81 (152)
T ss_dssp EE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEE
T ss_pred eeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEEE
Confidence 3455 899999999998752 22222 233333443 345578999999999999988653221 2346678
Q ss_pred EEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 91 AMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 91 ~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
+.++|+|++||+|+|+.++..+++.+.+. +++.+.+.+.++|.+|+++|+|+||+.+++..
T Consensus 82 ~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 82 HRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp EEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred eeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 88999999999999999999999999987 89999999999999999999999999999874
No 25
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.73 E-value=5.9e-16 Score=110.78 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=94.9
Q ss_pred CCeEEeecCCCCChH-HHHHHHHhhcC-CCchHHHHHHHHhh-----CCCeEEEEEE--CCeEEEEEEEEecC---CCCC
Q 028771 18 PEIEYVSYGGEHHLP-LIMNLVDQELS-EPYSIFTYRYFVYL-----WPHLSFLAFH--KGKCVGTVVCKMGE---HRST 85 (204)
Q Consensus 18 ~~~~~~~~~~~~d~~-~i~~l~~~~~~-~~~~~~~~~~~~~~-----~~~~~~v~~~--~g~ivG~~~~~~~~---~~~~ 85 (204)
..+.++... .+|.+ .+.+++..... .+++.+.+...+.. .....+++.+ +|++||++.+.... ....
T Consensus 5 ~~~~ir~~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (150)
T PLN02706 5 EKFKVRRLE-ISDKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCG 83 (150)
T ss_pred CceEEeEhh-hcccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCC
Confidence 345555555 78877 47887776433 35666555555432 2234556665 68999999875332 1223
Q ss_pred ceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 86 FRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 86 ~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
..++|..++|+|+|||+|||+.|++.+++++++.|+..+.+.+.++|. +||+|+||+..+.
T Consensus 84 ~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 84 KVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred cEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 467788899999999999999999999999999999999999999985 5999999998763
No 26
>PRK10314 putative acyltransferase; Provisional
Probab=99.73 E-value=4.4e-17 Score=117.05 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=98.8
Q ss_pred CCCChHHHHHHHHhhcCCCchHHHHHHHHhh----CCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccC
Q 028771 27 GEHHLPLIMNLVDQELSEPYSIFTYRYFVYL----WPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGR 102 (204)
Q Consensus 27 ~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~ 102 (204)
+.+++..+..+..++|-....... . .++. .....+++++++++||++.+.+..+. ...++|+.++|+|+|||+
T Consensus 13 ~~~~~~~~~~lR~~VF~~eq~~~~-~-e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~-~~~~~i~rv~V~~~~rG~ 89 (153)
T PRK10314 13 SVSQLYALLQLRCAVFVVEQNCPY-Q-DIDGDDLTGDNRHILGWKNDELVAYARILKSDDD-LEPVVIGRVIVSEALRGE 89 (153)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCc-c-ccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCC-CCCEEEEEEEECHHHhCC
Confidence 345567777777777743322111 1 1122 23567788899999999999775332 224789999999999999
Q ss_pred CHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCCcceeeEeccC
Q 028771 103 GIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLF 167 (204)
Q Consensus 103 Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~~~l 167 (204)
|+|++|++++++.+.+. +...+.|.+. ..+..||+|+||+.++. .|...|.+++.|.|.+
T Consensus 90 GiG~~Lm~~~~~~~~~~~~~~~i~L~a~---~~a~~fY~k~GF~~~g~--~f~~~Gi~h~~M~~~~ 150 (153)
T PRK10314 90 KVGQQLMSKTLESCTRHWPDKPVYLGAQ---AHLQNFYQSFGFIPVTE--VYEEDGIPHIGMAREV 150 (153)
T ss_pred CHHHHHHHHHHHHHHHHCCCCcEEEehH---HHHHHHHHHCCCEECCC--ccccCCCCcHhhhhhh
Confidence 99999999999999875 6777877663 46899999999999885 4566788999997755
No 27
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.72 E-value=7.5e-16 Score=121.98 Aligned_cols=134 Identities=21% Similarity=0.223 Sum_probs=103.0
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHhhcCC-----CchHHHHHHHHhh---CCCeEEEEEE--CCeEEEEEEEEecCCCCC
Q 028771 16 DPPEIEYVSYGGEHHLPLIMNLVDQELSE-----PYSIFTYRYFVYL---WPHLSFLAFH--KGKCVGTVVCKMGEHRST 85 (204)
Q Consensus 16 ~~~~~~~~~~~~~~d~~~i~~l~~~~~~~-----~~~~~~~~~~~~~---~~~~~~v~~~--~g~ivG~~~~~~~~~~~~ 85 (204)
.+..++++.+....|.+.+.++.+..+.+ .|+.+.+...... .+...+++++ +|++||++.+....+. .
T Consensus 146 ~~~g~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~-~ 224 (292)
T TIGR03448 146 VPDGVTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDE-P 224 (292)
T ss_pred CCCCeEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCC-C
Confidence 35678888877667888888888777652 3555555433221 2344677776 6899999765543322 2
Q ss_pred ceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 86 FRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 86 ~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
..++|..++|+|+|||+|||+.|+..+++++++.|+..+.+.+.+.|.+|++||+|+||+..++.
T Consensus 225 ~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 225 ALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred ceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 24677778999999999999999999999999999999999999999999999999999987754
No 28
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.72 E-value=4e-17 Score=113.14 Aligned_cols=146 Identities=23% Similarity=0.368 Sum_probs=122.0
Q ss_pred CCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEE-ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHH
Q 028771 28 EHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAF-HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIAT 106 (204)
Q Consensus 28 ~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~ 106 (204)
..|+-..-.+.-+.+...++..++...+..++..+.+++ .++++.|++............+++..+.|.|+||+.|+|+
T Consensus 9 ~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~ 88 (173)
T KOG3234|consen 9 PQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAA 88 (173)
T ss_pred HHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHH
Confidence 444444444444455567788888888889999999988 4689999998877666666778999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCC--cceeeEeccCCCCCCC
Q 028771 107 ELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNG--VDAFRLKLLFPCPEIH 173 (204)
Q Consensus 107 ~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~--~~~~~m~~~l~~~~~~ 173 (204)
.||..+.+.....+.-.+.|.|...|+-|+.||+++||...++..+||..| +|++-|+|.++.....
T Consensus 89 ~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~~g~deda~dMRKalSrD~dk 157 (173)
T KOG3234|consen 89 KLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYSVGPDEDAYDMRKALSRDVDK 157 (173)
T ss_pred HHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEeeeeeeccCCCcchHhhhhhhccCccc
Confidence 999999999988777889999999999999999999999999999998744 6999999999865443
No 29
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.71 E-value=1.5e-15 Score=112.64 Aligned_cols=150 Identities=19% Similarity=0.300 Sum_probs=108.7
Q ss_pred CCCeEEeecCCCCChHHHHHHHHhhc------CCCch-HH----HHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCC
Q 028771 17 PPEIEYVSYGGEHHLPLIMNLVDQEL------SEPYS-IF----TYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRST 85 (204)
Q Consensus 17 ~~~~~~~~~~~~~d~~~i~~l~~~~~------~~~~~-~~----~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~ 85 (204)
...+.++... .+|++.+.++..+.. ..++. .. .+...........|++..+|++||++.+...... .
T Consensus 4 ~~~l~lR~~~-~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~-~ 81 (186)
T PRK15130 4 AHSVKLRPLE-REDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHV-H 81 (186)
T ss_pred CCeeEEecCC-HHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCC-C
Confidence 3445555544 789998988876531 11111 11 1122222344567888899999999988665322 2
Q ss_pred ceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc-CC--ccee
Q 028771 86 FRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL-NG--VDAF 161 (204)
Q Consensus 86 ~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~--~~~~ 161 (204)
..+.++ ++|+|+|||+|+|+.++..+++++.+. ++.++.+.+...|.+|++||+|+||+.++.....+. +| .|.+
T Consensus 82 ~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~~ 160 (186)
T PRK15130 82 RRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNTI 160 (186)
T ss_pred CeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEEE
Confidence 245665 899999999999999999999999875 999999999999999999999999999998765533 55 4777
Q ss_pred eEeccCCC
Q 028771 162 RLKLLFPC 169 (204)
Q Consensus 162 ~m~~~l~~ 169 (204)
.|.+.-+.
T Consensus 161 ~~~~~~~~ 168 (186)
T PRK15130 161 RMCIFQHQ 168 (186)
T ss_pred EEEeeHHH
Confidence 77766643
No 30
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.71 E-value=2.7e-16 Score=109.85 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=97.3
Q ss_pred eecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccC
Q 028771 23 VSYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGR 102 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~ 102 (204)
++.++..|++.|.+++......+--.......+...-..+++++.+|.+||++.+.+.. ..+.+++..++|+|+|||+
T Consensus 3 iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~--~~~~gE~~~laV~pd~r~~ 80 (153)
T COG1246 3 IRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVL--EEDLGELRSLAVHPDYRGS 80 (153)
T ss_pred eeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccC--ccCeeeEEEEEECHHhcCC
Confidence 45677899999999999877644322222333333344588999999999999998643 3347999999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 103 GIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
|+|..|+..++..|++.|++.+++.+. .+..||+++||+.+..
T Consensus 81 G~G~~Ll~~~~~~Ar~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 81 GRGERLLERLLADARELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred CcHHHHHHHHHHHHHHcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 999999999999999999999998875 3778999999998764
No 31
>PRK07757 acetyltransferase; Provisional
Probab=99.71 E-value=5.8e-16 Score=111.07 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=88.3
Q ss_pred eecCCCCChHHHHHHHHhhcCCCc----hHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcc
Q 028771 23 VSYGGEHHLPLIMNLVDQELSEPY----SIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKP 98 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~ 98 (204)
++..+.+|++.+.++........+ +...+. ......+++..+|++||++.+...... .++|..++|+|+
T Consensus 4 ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~lvG~~~l~~~~~~---~~~i~~v~V~p~ 76 (152)
T PRK07757 4 IRKARLSDVKAIHALINVYAKKGLMLPRSLDELY----ENIRDFYVAEEEGEIVGCCALHILWED---LAEIRSLAVSED 76 (152)
T ss_pred EeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHH----hccCcEEEEEECCEEEEEEEEEeccCC---ceEEEEEEECHH
Confidence 344568999999999887543222 222222 222356788889999999998764322 578989999999
Q ss_pred cccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 99 YRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 99 ~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
|||+|+|+.|+..+++.+.+.|+..+.+.+. +.+||+|+||+..+.
T Consensus 77 ~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 77 YRGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 9999999999999999999889888876553 468999999999876
No 32
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.69 E-value=1.7e-15 Score=110.70 Aligned_cols=118 Identities=21% Similarity=0.202 Sum_probs=89.2
Q ss_pred eecCCCCChHHHHHHHHhhcCCCc-hHHHHHHHHhhCCCeEEEEE-ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccc
Q 028771 23 VSYGGEHHLPLIMNLVDQELSEPY-SIFTYRYFVYLWPHLSFLAF-HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYR 100 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~-~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~R 100 (204)
++..+++|.+.+.+++........ ........+.. ...+++++ ++|++||++.+..... ..++|..++|+|+||
T Consensus 8 iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~~~~~iiG~~~~~~~~~---~~~~i~~l~V~p~~r 83 (169)
T PRK07922 8 VRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEA-VQEFWVAEHLDGEVVGCGALHVMWE---DLAEIRTVAVDPAAR 83 (169)
T ss_pred eecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhh-cCcEEEEEecCCcEEEEEEEeecCC---CceEEEEEEECHHHh
Confidence 455669999999999886543211 11112222222 34577888 8999999998765432 257898999999999
Q ss_pred cCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 101 GRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
|+|+|++|++++++++++.|++.+.+.+. +++||+|+||+..+.
T Consensus 84 gkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 84 GRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 99999999999999999999999987664 368999999998753
No 33
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.69 E-value=5.4e-16 Score=110.97 Aligned_cols=121 Identities=21% Similarity=0.210 Sum_probs=105.3
Q ss_pred CChHHHHHHHHhhcC-------CCchHHHHHHHHhhCCCeEEEEEECC-eEEEEEEEEecCCCCCceEEEEEEEeCcccc
Q 028771 29 HHLPLIMNLVDQELS-------EPYSIFTYRYFVYLWPHLSFLAFHKG-KCVGTVVCKMGEHRSTFRGYIAMLVVIKPYR 100 (204)
Q Consensus 29 ~d~~~i~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~g-~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~R 100 (204)
+++++..+|...... .+|.+..-...+......++++++++ .+|||..++..-+.+.+..|+..+-|.++||
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR 133 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYR 133 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhh
Confidence 678888888887543 34666666677777777888888776 8999999999888777899999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 101 GRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
|+|||+.||+.+...+.....+.|.|+|...|.+|++||.++||.....
T Consensus 134 ~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~ 182 (202)
T KOG2488|consen 134 GKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEE 182 (202)
T ss_pred ccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCC
Confidence 9999999999999999999999999999999999999999999987543
No 34
>PHA01807 hypothetical protein
Probab=99.69 E-value=1.2e-15 Score=108.96 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=87.6
Q ss_pred cCCCCChHHHHHHHHhhcC---CC--ch--HH---HHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCC-CceEEEEEE
Q 028771 25 YGGEHHLPLIMNLVDQELS---EP--YS--IF---TYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRS-TFRGYIAML 93 (204)
Q Consensus 25 ~~~~~d~~~i~~l~~~~~~---~~--~~--~~---~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~-~~~~~i~~l 93 (204)
-+..+|+..+..+....+. .. |. .+ .+...+.......++++++|++||++.+....... .....+..|
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~l 87 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQ 87 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeE
Confidence 3557788888887776543 21 22 22 22222233445568888999999999887654321 112334457
Q ss_pred EeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHC
Q 028771 94 VVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRL 142 (204)
Q Consensus 94 ~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~ 142 (204)
+|+|+|||+|||++||+.+++.+++.|+..+.+.+..+|.+|++||++.
T Consensus 88 YV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 88 YVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999974
No 35
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.69 E-value=6.9e-16 Score=128.19 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=93.9
Q ss_pred eecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccC
Q 028771 23 VSYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGR 102 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~ 102 (204)
++.++.+|++.+.++++......+........+......+++++++|++||++.+.+... ...++|..++|+|+|||+
T Consensus 285 IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~V~~~dg~iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg~ 362 (429)
T TIGR01890 285 IRQATIDDIGGIAALIRPLEEQGILVRRSREYLEREISEFSIIEHDGNIIGCAALYPYAE--EDCGEMACLAVSPEYQDG 362 (429)
T ss_pred eEECCHHHHHHHHHHHHHHHHcCCchhhhHHHHHhhcCcEEEEEECCEEEEEEEEEecCC--CCeEEEEEEEECHHHcCC
Confidence 455678999999999876544444333333344444445777888999999999877542 236889999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 103 GIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
|+|++||+++++++++.|++.+.+.. .| +.+||+++||+.++.
T Consensus 363 GiG~~Ll~~l~~~A~~~G~~~l~v~~--~~--a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 363 GRGERLLAHIEDRARQMGISRLFVLT--TR--TGHWFRERGFQTASV 405 (429)
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEEee--cc--hHHHHHHCCCEECCh
Confidence 99999999999999999998876543 33 679999999999876
No 36
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.67 E-value=6.5e-15 Score=105.89 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=98.2
Q ss_pred ecCCCCChHHHHHHHHhhc------CCC-chHHHHHHHH----hhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEE
Q 028771 24 SYGGEHHLPLIMNLVDQEL------SEP-YSIFTYRYFV----YLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAM 92 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~------~~~-~~~~~~~~~~----~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~ 92 (204)
+..+++|++.+.++.++.. ..+ .+......++ .......|++..+|++||++.+...... ...++++
T Consensus 4 r~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~-~~~~~~g- 81 (156)
T TIGR03585 4 TPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLV-HKSAFWG- 81 (156)
T ss_pred ccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChh-hCeEEEE-
Confidence 3445778888887765421 111 2322222222 2223457888889999999999765422 2346676
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecc-cCC--cceeeE
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYY-LNG--VDAFRL 163 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~-~~~--~~~~~m 163 (204)
+++.|.+| +|+|+.++..+++++++. +++.+.+.+.+.|.+|++||+|+||+.++....+. .+| .|.++|
T Consensus 82 ~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~~ 155 (156)
T TIGR03585 82 IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLM 155 (156)
T ss_pred EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEEe
Confidence 45999999 999999999999999864 99999999999999999999999999999887663 344 355544
No 37
>PRK10514 putative acetyltransferase; Provisional
Probab=99.67 E-value=7.2e-15 Score=104.46 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=88.5
Q ss_pred ecCCCCChHHHHHHHHhhcC------CCchHHHHHHHHhh--CCCeEEEEE-ECCeEEEEEEEEecCCCCCceEEEEEEE
Q 028771 24 SYGGEHHLPLIMNLVDQELS------EPYSIFTYRYFVYL--WPHLSFLAF-HKGKCVGTVVCKMGEHRSTFRGYIAMLV 94 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~------~~~~~~~~~~~~~~--~~~~~~v~~-~~g~ivG~~~~~~~~~~~~~~~~i~~l~ 94 (204)
+..+.+|.+.+.+++...+. .+...+.+...+.. .....+++. .+|++||++.+.. .++..++
T Consensus 5 r~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~--------~~~~~~~ 76 (145)
T PRK10514 5 RRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG--------GHMEALF 76 (145)
T ss_pred eecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec--------CcEeEEE
Confidence 44568999999998876421 12223333322221 123345554 6899999998742 2356799
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc-CCcceeeEe
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL-NGVDAFRLK 164 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~~~~~~m~ 164 (204)
|+|+|||+|+|++|++++++.+ ..+.+.+...|.+|++||+|+||+..++...-.. .+-+.+.|.
T Consensus 77 v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~~~~~~~~~~~~~~ 142 (145)
T PRK10514 77 VDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRSEVDDQGRPYPLLHLA 142 (145)
T ss_pred ECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEecccccCCCCCccceEEEE
Confidence 9999999999999999999864 4577899999999999999999999887543322 223444443
No 38
>PLN02825 amino-acid N-acetyltransferase
Probab=99.66 E-value=1e-15 Score=128.09 Aligned_cols=120 Identities=15% Similarity=0.044 Sum_probs=95.9
Q ss_pred eEEeecCCCCChHHHHHHHHhhcCCC----chHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEe
Q 028771 20 IEYVSYGGEHHLPLIMNLVDQELSEP----YSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVV 95 (204)
Q Consensus 20 ~~~~~~~~~~d~~~i~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V 95 (204)
+.-++.++.+|++.|.+++......+ ++.+.+.. ....+++++.||++||++.+.+... ...++|..++|
T Consensus 367 ~e~IR~At~eDi~~I~~Li~~lee~g~lv~rs~e~le~----ei~~f~V~e~Dg~IVG~aal~~~~~--~~~aEI~~laV 440 (515)
T PLN02825 367 YEGTRMARVEDLAGIRQIIRPLEESGILVRRTDEELLR----ALDSFVVVEREGSIIACAALFPFFE--EKCGEVAAIAV 440 (515)
T ss_pred HhhheeCCHHHHHHHHHHHHHHHHcCCCcCCCHHHHHh----cCCcEEEEEECCEEEEEEEEEeecC--CCcEEEEEEEE
Confidence 44456678899999999998754433 23333322 2345788889999999998876543 34689999999
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 96 IKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 96 ~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
+|+|||+|+|++||+++++.+++.|++.+.+.+. .+.+||+++||+..+.
T Consensus 441 ~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt----~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 441 SPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTT----RTADWFVRRGFSECSI 490 (515)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeC----cHHHHHHHCCCEEeCh
Confidence 9999999999999999999999999999998773 4789999999998764
No 39
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.66 E-value=1.4e-15 Score=126.92 Aligned_cols=122 Identities=15% Similarity=0.077 Sum_probs=91.3
Q ss_pred EeecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCccccc
Q 028771 22 YVSYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRG 101 (204)
Q Consensus 22 ~~~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg 101 (204)
.++..+.+|++.+.+++.......+........+......++++++++++||++.+..... ...++|..++|+|+|||
T Consensus 296 ~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~va~~dg~iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg 373 (441)
T PRK05279 296 QLRRATIDDVGGILELIRPLEEQGILVRRSREQLEREIDKFTVIERDGLIIGCAALYPFPE--EKMGEMACLAVHPDYRG 373 (441)
T ss_pred HeEeCCHHHHHHHHHHHHHHHHcCCccccCHHHHhcccCcEEEEEECCEEEEEEEEEEcCC--CCeEEEEEEEECHHHcC
Confidence 3445678899999998865332222111112222333345788889999999998776542 23588999999999999
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 102 RGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
+|+|++|++++++++++.|+..+.+.+ ..+++||+++||+..+.
T Consensus 374 ~GiG~~Ll~~l~~~a~~~g~~~l~l~~----~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 374 SGRGERLLKRIEQRARQLGLKRLFVLT----TRTAHWFLERGFVPVDV 417 (441)
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEec----chHHHHHHHCcCEECCh
Confidence 999999999999999999998887643 35899999999999876
No 40
>PRK10562 putative acetyltransferase; Provisional
Probab=99.66 E-value=1.2e-14 Score=103.50 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=93.5
Q ss_pred ecCCCCChHHHHHHHHhhc--CCCchHHH-HH---HHHh---hCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEE
Q 028771 24 SYGGEHHLPLIMNLVDQEL--SEPYSIFT-YR---YFVY---LWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLV 94 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~--~~~~~~~~-~~---~~~~---~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~ 94 (204)
+..+.+|++.+.+++.... ..++.... +. .... ......+++..+|++||++.+... ..++.++
T Consensus 3 r~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-------~~i~~~~ 75 (145)
T PRK10562 3 REYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-------RFVGALF 75 (145)
T ss_pred ccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-------cEEEEEE
Confidence 4456889999999887642 22222111 11 1111 123346777788999999987532 3577899
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc-CCcceeeEeccC
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL-NGVDAFRLKLLF 167 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~~~~~~m~~~l 167 (204)
|+|+|||+|+|+.|++++++. +..+.+.+...|.+|++||+|+||+.++. .++. ++.++++|...-
T Consensus 76 v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~--~~~~~~~~~~~~~~~~~ 142 (145)
T PRK10562 76 VAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDS--AWQEETQHPTWIMSWQA 142 (145)
T ss_pred ECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEccc--cccCCCCCEEEEEEecC
Confidence 999999999999999988774 35688889999999999999999999884 4555 456888887653
No 41
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.66 E-value=4e-15 Score=94.99 Aligned_cols=77 Identities=30% Similarity=0.460 Sum_probs=64.5
Q ss_pred CeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 60 HLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 60 ~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
+.++++++++++||++.+....+ ..+|..++|+|++||+|||+.|++.+.+.+. .+.+.+.+ |+.+..||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~~----~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~---~~~i~l~~---~~~~~~fY 72 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNED----FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK---SKKIFLFT---NPAAIKFY 72 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETTT----EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT---CSEEEEEE---EHHHHHHH
T ss_pred cEEEEEEECCEEEEEEEEEEcCC----EEEEEEEEECHHHcCCCHHHHHHHHHHHHcC---CCcEEEEE---cHHHHHHH
Confidence 46788899999999999966543 5799999999999999999999999988883 35566666 45799999
Q ss_pred HHCCCEE
Q 028771 140 GRLGFIR 146 (204)
Q Consensus 140 ~k~GF~~ 146 (204)
+++||++
T Consensus 73 ~~~GF~~ 79 (79)
T PF13508_consen 73 EKLGFEE 79 (79)
T ss_dssp HHTTEEE
T ss_pred HHCcCCC
Confidence 9999985
No 42
>PRK09831 putative acyltransferase; Provisional
Probab=99.64 E-value=3.4e-15 Score=106.64 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=88.7
Q ss_pred ecCCCCChHHHHHHHHhhcCC----CchHHHHHHH--------Hh-hCCCeEEEEEECCeEEEEEEEEecCCCCCceEEE
Q 028771 24 SYGGEHHLPLIMNLVDQELSE----PYSIFTYRYF--------VY-LWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYI 90 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~----~~~~~~~~~~--------~~-~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i 90 (204)
+.++++|++.+.+++.+.+.. .++.+....+ .. .....++++.++|++||++.+.. .++
T Consensus 4 r~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iiG~~~~~~--------~~i 75 (147)
T PRK09831 4 RNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIE--------HYI 75 (147)
T ss_pred ccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEECCEEEEEEEehh--------cee
Confidence 556688999999998875432 2232222111 00 12345788889999999988742 457
Q ss_pred EEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc-CCcceeeEecc
Q 028771 91 AMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL-NGVDAFRLKLL 166 (204)
Q Consensus 91 ~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~~~~~~m~~~ 166 (204)
..++|+|++||+|||++|++++++.+.. + .+.. |..+++||+|+||+.+++...-.. ...+.+.|.|.
T Consensus 76 ~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l--~v~~-~~~a~~~Y~k~Gf~~~g~~~~~~~g~~~~~~~m~~~ 144 (147)
T PRK09831 76 DMLFVDPEYTRRGVASALLKPLIKSESE-----L--TVDA-SITAKPFFERYGFQTVKQQRVECRGEWFINFYMRYK 144 (147)
T ss_pred eeEEECHHHcCCCHHHHHHHHHHHHhhh-----e--Eeec-chhhHHHHHHCCCEEeeccceEECCEEEEeeEEEec
Confidence 8899999999999999999999998764 2 3332 567999999999999998652222 22466666654
No 43
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.63 E-value=1.7e-14 Score=115.61 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=99.1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHhh--cC---CCchHHHHHHHHhhCCCeEEEEE--E---CCeEEEEEEEEecCCCCCc
Q 028771 17 PPEIEYVSYGGEHHLPLIMNLVDQE--LS---EPYSIFTYRYFVYLWPHLSFLAF--H---KGKCVGTVVCKMGEHRSTF 86 (204)
Q Consensus 17 ~~~~~~~~~~~~~d~~~i~~l~~~~--~~---~~~~~~~~~~~~~~~~~~~~v~~--~---~g~ivG~~~~~~~~~~~~~ 86 (204)
...+.+ +..++.|++.+.+|.... |. ..|+...+...+... ..+++. + ++.+||++.+.... .
T Consensus 184 ~m~~~I-r~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~--~~~~~~~~d~~gd~givG~~~~~~~~----~ 256 (320)
T TIGR01686 184 ELSLNI-SKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE--EIVTVSMSDRFGDSGIIGIFVFEKKE----G 256 (320)
T ss_pred CCEEEE-EECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC--CEEEEEEEecCCCCceEEEEEEEecC----C
Confidence 344554 555699999999999876 43 457778787777654 344333 2 57899999876532 2
Q ss_pred eEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEe--cCCHHHHHHHHHCCCEEe
Q 028771 87 RGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAE--VTNKGALALYGRLGFIRA 147 (204)
Q Consensus 87 ~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~--~~N~~a~~~y~k~GF~~~ 147 (204)
.++|..++|+|++||+|+|+.||.++++.+++.|++.+.+.+. ..|.+|+.||+++||+..
T Consensus 257 ~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 257 NLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred cEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 5789999999999999999999999999999999999999885 489999999999999853
No 44
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.62 E-value=1.1e-14 Score=115.33 Aligned_cols=123 Identities=20% Similarity=0.116 Sum_probs=93.7
Q ss_pred ecCCCCChHHHHHHHHhhcC----CCchHHHHHHHHhh--CCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCc
Q 028771 24 SYGGEHHLPLIMNLVDQELS----EPYSIFTYRYFVYL--WPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIK 97 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~--~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p 97 (204)
...+++|++.+.+|...+.. .+++.+........ .....+++.++|++||++.+.+.... ..++..++|+|
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~---~~~~~~l~V~p 80 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVLRGLREPGAGHTRHLVAVDSDPIVGYANLVPARGT---DPAMAELVVHP 80 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHhhccccCCCCceEEEEEECCEEEEEEEEEcCCCC---cceEEEEEECH
Confidence 34457888999999886543 34665554333221 23457888899999999988765322 25688899999
Q ss_pred ccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeec
Q 028771 98 PYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRY 153 (204)
Q Consensus 98 ~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~ 153 (204)
+|||+|||++|++++++.+. ..+.+.+...|.+|++||+++||+.......+
T Consensus 81 ~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~~~ 132 (292)
T TIGR03448 81 AHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRELLQM 132 (292)
T ss_pred hhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccEEEEE
Confidence 99999999999999998764 45778888899999999999999988765554
No 45
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.62 E-value=3.2e-15 Score=108.70 Aligned_cols=151 Identities=25% Similarity=0.305 Sum_probs=119.6
Q ss_pred eEEeecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCC-------CceEEEEE
Q 028771 20 IEYVSYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRS-------TFRGYIAM 92 (204)
Q Consensus 20 ~~~~~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~-------~~~~~i~~ 92 (204)
+...+..++.++.++.+|...+|+..+...++.+.+.. +...-++..++..||........... ...++|..
T Consensus 16 ~~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~~~-~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~ 94 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVLSN-GDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYILS 94 (187)
T ss_pred ceeeccCCcchHHHHHHHhccccCcchHHHHHHHHHhc-CCHHHhhhhccccccceeeeehhhhhhhhhhhccceeEEEe
Confidence 45566778999999999999999999988866666555 33444444555555555554443221 11488999
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcC-CcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCC--cceeeEeccCCC
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESG-CEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNG--VDAFRLKLLFPC 169 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g-~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~--~~~~~m~~~l~~ 169 (204)
++|.|+||.+|||+.||+.+.+.+.... ++.+++.+...|..|+.||++.||+.+.+...+|... .+...|.+.+..
T Consensus 95 Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~~~~l~~~~~~ 174 (187)
T KOG3138|consen 95 LGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPDDSFLRKLLIH 174 (187)
T ss_pred ecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcchhhhhhheec
Confidence 9999999999999999999999999886 8899999999999999999999999999999987633 578888888876
Q ss_pred CC
Q 028771 170 PE 171 (204)
Q Consensus 170 ~~ 171 (204)
+.
T Consensus 175 ~~ 176 (187)
T KOG3138|consen 175 GS 176 (187)
T ss_pred CC
Confidence 65
No 46
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.62 E-value=5.8e-14 Score=101.05 Aligned_cols=145 Identities=21% Similarity=0.189 Sum_probs=113.7
Q ss_pred EeecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhh----CCCeEEEEEECCeEEEEEEEEecCCC--CCceEEEEEEEe
Q 028771 22 YVSYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYL----WPHLSFLAFHKGKCVGTVVCKMGEHR--STFRGYIAMLVV 95 (204)
Q Consensus 22 ~~~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~g~ivG~~~~~~~~~~--~~~~~~i~~l~V 95 (204)
.++..++.|.+.+.++....|. +......-+.+.. .....+|+.++|++||.+.+.+..-. .....-++.++|
T Consensus 5 ~ir~e~~~d~~~i~~~~~~aF~-~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV 83 (171)
T COG3153 5 LIRTETPADIPAIEALTREAFG-PGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAV 83 (171)
T ss_pred EEEecChhhHHHHHHHHHHHhh-cchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEE
Confidence 3455669999999999999997 3333333333333 34678999999999999999887544 445677889999
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc-CCcceeeEeccCCCCCCC
Q 028771 96 IKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL-NGVDAFRLKLLFPCPEIH 173 (204)
Q Consensus 96 ~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~~~~~~m~~~l~~~~~~ 173 (204)
+|+|||||||++|+...++.++..|+..+.+.=.+. +|.++||+......-+.. ..++...|.+.|.++...
T Consensus 84 ~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~------YY~rfGF~~~~~~~l~~p~~~~~~~fl~~~L~~~~l~ 156 (171)
T COG3153 84 DPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPT------YYSRFGFEPAAGAKLYAPGPVPDERFLALELGDGALE 156 (171)
T ss_pred chhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc------cccccCcEEccccccccCCCCCCceEEEEEccCCccc
Confidence 999999999999999999999999999888776664 899999999887655533 346888888888765443
No 47
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.60 E-value=2.2e-14 Score=123.94 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=91.7
Q ss_pred CCCeEEeecCCCCChHHHHHHHHhhcC----CCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEE
Q 028771 17 PPEIEYVSYGGEHHLPLIMNLVDQELS----EPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAM 92 (204)
Q Consensus 17 ~~~~~~~~~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~ 92 (204)
+..+.++. .+.+|++.+.+++..... .++.... +......+++++++|++||++.+..... ..++|..
T Consensus 461 ~~gm~IR~-a~~~D~~~I~~L~~~~~~~~~~~~~~~~~----l~~~~~~~~Va~~~g~IVG~~~l~~~~~---~~~~I~~ 532 (614)
T PRK12308 461 TSGVKVRP-ARLTDIDAIEGMVAYWAGLGENLPRSRNE----LVRDIGSFAVAEHHGEVTGCASLYIYDS---GLAEIRS 532 (614)
T ss_pred CCCCEEEE-CCHHHHHHHHHHHHHHHhhhcccccCHHH----HhcccCcEEEEEECCEEEEEEEEEEcCC---CeEEEEE
Confidence 34455544 558999999999876432 2222222 2223346788889999999998876432 2578999
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
++|+|+|||+|||+.|++++++++++.|++.+.+.+. +..||+|+||+.+++
T Consensus 533 i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~-----a~~FYek~GF~~~~~ 584 (614)
T PRK12308 533 LGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR-----VPEFFMKQGFSPTSK 584 (614)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC-----cHHHHHHCCCEECCc
Confidence 9999999999999999999999999999998887642 568999999998875
No 48
>PRK01346 hypothetical protein; Provisional
Probab=99.57 E-value=8.9e-14 Score=115.21 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=98.3
Q ss_pred eEEeecCCCCChHHHHHHHHhhcCCCchHHHHHHHHhh-CCCeEEEEEECCeEEEEEEEEecC-----CCCCceEEEEEE
Q 028771 20 IEYVSYGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYL-WPHLSFLAFHKGKCVGTVVCKMGE-----HRSTFRGYIAML 93 (204)
Q Consensus 20 ~~~~~~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~g~ivG~~~~~~~~-----~~~~~~~~i~~l 93 (204)
+.++ ..+.+|++.+.++....|....+......+... .....++++++|++||++.+.+.. ....+.++|..+
T Consensus 7 ~~iR-~~~~~D~~~i~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v 85 (411)
T PRK01346 7 ITIR-TATEEDWPAWFRAAATGFGDSPSDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAV 85 (411)
T ss_pred ceee-cCCHHHHHHHHHHHHHHcCCCCChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCccceeEEEEE
Confidence 4444 445889999999999998765544444333322 334578888999999999987543 112357899999
Q ss_pred EeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeec
Q 028771 94 VVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRY 153 (204)
Q Consensus 94 ~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~ 153 (204)
+|+|+|||+|||++||+++++.+++.|...+.|.+.. .+||+|+||........+
T Consensus 86 ~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~~ 140 (411)
T PRK01346 86 TVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE-----GGIYGRFGYGPATYSQSL 140 (411)
T ss_pred EEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHhhCCCeeccceEEE
Confidence 9999999999999999999999999998877776543 369999999988776555
No 49
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.53 E-value=7.6e-13 Score=93.41 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=88.5
Q ss_pred eEEeecCCCCChHHHHHHHHhh----c---CCC-chHHHHHHHHhh-------CCCeEEEEEE--CCeEEEEEEEEecCC
Q 028771 20 IEYVSYGGEHHLPLIMNLVDQE----L---SEP-YSIFTYRYFVYL-------WPHLSFLAFH--KGKCVGTVVCKMGEH 82 (204)
Q Consensus 20 ~~~~~~~~~~d~~~i~~l~~~~----~---~~~-~~~~~~~~~~~~-------~~~~~~v~~~--~g~ivG~~~~~~~~~ 82 (204)
+.++++. ++|++.+.++.++. + ... ++......++.. .....|++.+ ++++||++.+.....
T Consensus 2 l~lr~~~-~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~ 80 (142)
T PF13302_consen 2 LTLRPLT-PEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK 80 (142)
T ss_dssp EEEEE-H-GGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET
T ss_pred EEEEcCC-HHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc
Confidence 4555555 88999999988631 1 111 244444444431 1134566664 357999999943321
Q ss_pred CCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHHHHCCCE
Q 028771 83 RSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMME-SGCEEVTLEAEVTNKGALALYGRLGFI 145 (204)
Q Consensus 83 ~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~-~g~~~i~l~~~~~N~~a~~~y~k~GF~ 145 (204)
....++|+ +.|.|+|||+|+|+.++..+++++.+ .|+..+.+.+.++|.+|+++++|+||+
T Consensus 81 -~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 81 -NNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp -TTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred -CCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 34478888 88999999999999999999999964 599999999999999999999999996
No 50
>PRK13688 hypothetical protein; Provisional
Probab=99.52 E-value=5.1e-13 Score=95.93 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=74.7
Q ss_pred cCCCCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCC-------CCCceEEEEEEEeCc
Q 028771 25 YGGEHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEH-------RSTFRGYIAMLVVIK 97 (204)
Q Consensus 25 ~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~-------~~~~~~~i~~l~V~p 97 (204)
..+..|+..+.++....+.. + ....++++++++++||++.+..... .....++|..++|+|
T Consensus 22 ~~~~~dl~~l~~l~~~~f~~-~-----------~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p 89 (156)
T PRK13688 22 EFGNQELSMLEELQANIIEN-D-----------SESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLP 89 (156)
T ss_pred HhcHHHHHHHHhhhhhEeec-C-----------CCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECH
Confidence 34455666676666666531 1 1345678889999999987754321 123467899999999
Q ss_pred ccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 98 PYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 98 ~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
+|||+|||++|++.+. +.++. +.+...| .|.+||+|+||+..++.
T Consensus 90 ~~rgkGiG~~Ll~~a~----~~~~~---~~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 90 KYQNRGYGEMLVDFAK----SFQLP---IKTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred HHcCCCHHHHHHHHHH----HhCCe---EEEEecc-chHHHHHhCCCEEeEEe
Confidence 9999999999998543 33433 2344445 48899999999998865
No 51
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.52 E-value=6.2e-13 Score=86.08 Aligned_cols=61 Identities=26% Similarity=0.449 Sum_probs=53.0
Q ss_pred EEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 88 GYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 88 ~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
+.|+.+.|.|++||+|+|+.++..+.+.+.+.|.. ..+.+..+|.+|++||+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 56999999999999999999999999999998754 67899999999999999999999864
No 52
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.49 E-value=1.4e-12 Score=88.44 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=94.2
Q ss_pred CCeEEeecCCCCChHH-HHHHHHhhcCC-CchHHHHHHHHh----hCC-CeEEEEEE--CCeEEEEEEEEecCC---CCC
Q 028771 18 PEIEYVSYGGEHHLPL-IMNLVDQELSE-PYSIFTYRYFVY----LWP-HLSFLAFH--KGKCVGTVVCKMGEH---RST 85 (204)
Q Consensus 18 ~~~~~~~~~~~~d~~~-i~~l~~~~~~~-~~~~~~~~~~~~----~~~-~~~~v~~~--~g~ivG~~~~~~~~~---~~~ 85 (204)
..+.+++.. .+|+.. ..++.++.-.. ..+.+.|...+. ... ....|+++ .+++||.+.+..... ...
T Consensus 5 ~~~~lR~L~-~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g 83 (150)
T KOG3396|consen 5 DGFKLRPLE-EDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCG 83 (150)
T ss_pred CceEEeecc-cccccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccc
Confidence 346666666 667654 77777764432 234444444433 233 33444453 589999999987643 244
Q ss_pred ceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEee
Q 028771 86 FRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 86 ~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
..++|..+.|++++||+++|+.|+..+...+++.|+.++.|.+.+.| +.||+|+||...+
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~n---v~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKN---VKFYEKCGYSNAG 143 (150)
T ss_pred ccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhh---hhHHHHcCccccc
Confidence 56889999999999999999999999999999999999999999986 5699999998765
No 53
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.48 E-value=4.4e-13 Score=92.11 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=86.2
Q ss_pred CeEEEEEE-CCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHH
Q 028771 60 HLSFLAFH-KGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALA 137 (204)
Q Consensus 60 ~~~~v~~~-~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~ 137 (204)
...+..+. +|++||++.+.+....... ..|+.+.|+|++||+|+|.+||..+++.+.+. --+.+++.+-.. .+.
T Consensus 49 ~~Hl~~~~~~g~LvAyaRLl~~~~~~~~-~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQah---Lq~ 124 (155)
T COG2153 49 TRHLLGWTPDGELVAYARLLPPGAEYEE-VSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAH---LQD 124 (155)
T ss_pred cceEEEEcCCCeEEEEEecCCCCCCcCc-eeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHH---HHH
Confidence 34566665 9999999999887655443 77999999999999999999999999999887 346677777664 899
Q ss_pred HHHHCCCEEeeEEeecccCCcceeeEeccCC
Q 028771 138 LYGRLGFIRAKRLFRYYLNGVDAFRLKLLFP 168 (204)
Q Consensus 138 ~y~k~GF~~~~~~~~~~~~~~~~~~m~~~l~ 168 (204)
||.+.||+.++ ..|..+|.+++-|.+..+
T Consensus 125 fYa~~GFv~~~--e~yledGIpHv~M~r~~~ 153 (155)
T COG2153 125 FYASFGFVRVG--EEYLEDGIPHVGMIREVI 153 (155)
T ss_pred HHHHhCcEEcC--chhhcCCCCchhhhhccc
Confidence 99999999988 567789999999987764
No 54
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.47 E-value=6.4e-13 Score=104.68 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=67.4
Q ss_pred eEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHH
Q 028771 61 LSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYG 140 (204)
Q Consensus 61 ~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~ 140 (204)
..++..++|++||++.+.. .+|..++|+|+|||+|+|++|++++++++++.|++.+.|.+... +..||+
T Consensus 7 ~~~v~~~~~~iVG~~~l~~--------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~---~~~fYe 75 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG--------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPK---NAKFFR 75 (297)
T ss_pred EEEEEEECCEEEEEEEecc--------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEccc---HHHHHH
Confidence 3455567899999998742 25889999999999999999999999999999999999998765 468999
Q ss_pred HCCCEEeeE
Q 028771 141 RLGFIRAKR 149 (204)
Q Consensus 141 k~GF~~~~~ 149 (204)
|+||+..+.
T Consensus 76 k~GF~~~~~ 84 (297)
T cd02169 76 GLGFKELAN 84 (297)
T ss_pred HCCCEEecc
Confidence 999998883
No 55
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.40 E-value=7.8e-12 Score=94.62 Aligned_cols=92 Identities=23% Similarity=0.258 Sum_probs=76.3
Q ss_pred CCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHH
Q 028771 58 WPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALA 137 (204)
Q Consensus 58 ~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~ 137 (204)
.....+..+.+|+||+.+...-.. ...+.|..+++.|+|||||+|+.++..+.......|. ...|.+..+|..|.+
T Consensus 175 g~~~~~f~~~d~~iVa~A~t~a~~---~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk-~~~L~~~~~N~~A~~ 250 (268)
T COG3393 175 GRSRTYFLEGDGKIVAKAETAAEN---PAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGK-IPCLFVNSDNPVARR 250 (268)
T ss_pred hceeEEEEccCCcEEEeeeccccC---CcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCC-eeEEEEecCCHHHHH
Confidence 344455555677999998776443 3378999999999999999999999999999999884 456788899999999
Q ss_pred HHHHCCCEEeeEEeec
Q 028771 138 LYGRLGFIRAKRLFRY 153 (204)
Q Consensus 138 ~y~k~GF~~~~~~~~~ 153 (204)
.|+|.||+..+++..+
T Consensus 251 iY~riGF~~~g~~~~~ 266 (268)
T COG3393 251 IYQRIGFREIGEFREY 266 (268)
T ss_pred HHHHhCCeecceEEEE
Confidence 9999999999976554
No 56
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.39 E-value=1.9e-11 Score=97.76 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=70.7
Q ss_pred CeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 60 HLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 60 ~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
..+++++++|++||++.+.. ..|..++|+|+|||+|+|+.|+.++++.+.+.|...+.+.+.+.| .+||
T Consensus 31 d~~vv~~~~~~lVg~g~l~g--------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~---~~fy 99 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGIAG--------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEY---AALF 99 (332)
T ss_pred CEEEEEEECCEEEEEEEEec--------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchH---HHHH
Confidence 46788889999999998832 138899999999999999999999999999999999999997764 5799
Q ss_pred HHCCCEEeeEEe
Q 028771 140 GRLGFIRAKRLF 151 (204)
Q Consensus 140 ~k~GF~~~~~~~ 151 (204)
+++||...+...
T Consensus 100 ~klGF~~i~~~~ 111 (332)
T TIGR00124 100 EYCGFKTLAEAK 111 (332)
T ss_pred HHcCCEEeeeec
Confidence 999999988654
No 57
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3e-11 Score=88.75 Aligned_cols=98 Identities=21% Similarity=0.329 Sum_probs=79.5
Q ss_pred CeEEEEEEEEecCC-CCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEE
Q 028771 69 GKCVGTVVCKMGEH-RSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIR 146 (204)
Q Consensus 69 g~ivG~~~~~~~~~-~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~ 146 (204)
+++||.+.+..... .....++|+ +.+.|++||+|+|+.++..+++++... ++.++.+.+.+.|.+|+++++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~ig-~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEIG-YWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEEE-EEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 48999999987652 223356777 667999999999999999999999985 999999999999999999999999999
Q ss_pred eeEEeec-ccCC--cceeeEeccC
Q 028771 147 AKRLFRY-YLNG--VDAFRLKLLF 167 (204)
Q Consensus 147 ~~~~~~~-~~~~--~~~~~m~~~l 167 (204)
.+..... +..| .+.+.+.+..
T Consensus 156 eg~~~~~~~~~g~~~d~~~~~~~~ 179 (187)
T COG1670 156 EGELRQHEFIKGRWRDTVLYSLLR 179 (187)
T ss_pred hhhhhhceeeCCeeeeEEEEEEec
Confidence 9986654 3343 3555555544
No 58
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.27 E-value=5.3e-11 Score=84.49 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=77.3
Q ss_pred EEEEEECCeEEEEEEEEecCCC--CCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 62 SFLAFHKGKCVGTVVCKMGEHR--STFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 62 ~~v~~~~g~ivG~~~~~~~~~~--~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
+|.+..++++||++.++..-+. -...++|+ ..|.|..||||+|+++|+.+++.|++.|++.+.++++.+|.+|.+.-
T Consensus 71 y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI 149 (174)
T COG3981 71 YWAVDEDGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVI 149 (174)
T ss_pred EEEEecCCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHH
Confidence 4445567999999999876433 12257788 79999999999999999999999999999999999999999999999
Q ss_pred HHCCCEEeeEEee
Q 028771 140 GRLGFIRAKRLFR 152 (204)
Q Consensus 140 ~k~GF~~~~~~~~ 152 (204)
+++|=....++..
T Consensus 150 ~~NGGile~~~~~ 162 (174)
T COG3981 150 EANGGILENEFFG 162 (174)
T ss_pred HhcCCEEeEEEcc
Confidence 9999998877544
No 59
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.20 E-value=1.2e-09 Score=80.63 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=80.4
Q ss_pred chHHHHHHHHhhCCCeEEEEEECC--eEEEEEEEEecCC----------------------------------CCCceEE
Q 028771 46 YSIFTYRYFVYLWPHLSFLAFHKG--KCVGTVVCKMGEH----------------------------------RSTFRGY 89 (204)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~v~~~~g--~ivG~~~~~~~~~----------------------------------~~~~~~~ 89 (204)
.+...++...+......|+...++ +++|.+.+..... .....+.
T Consensus 13 nsPnDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~R 92 (196)
T PF13718_consen 13 NSPNDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGAR 92 (196)
T ss_dssp B-HHHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEE
T ss_pred CCHHHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhccee
Confidence 355667777777778889999888 9999998876511 0234578
Q ss_pred EEEEEeCcccccCCHHHHHHHHHHHHH-------------------------HHcCCcEEEEEEecCCHHHHHHHHHCCC
Q 028771 90 IAMLVVIKPYRGRGIATELVTRSIKVM-------------------------MESGCEEVTLEAEVTNKGALALYGRLGF 144 (204)
Q Consensus 90 i~~l~V~p~~Rg~Gig~~ll~~~~~~~-------------------------~~~g~~~i~l~~~~~N~~a~~~y~k~GF 144 (204)
|-.|+|+|++|++|+|+++++.+++++ +..+++.+...... +..-.+||+|+||
T Consensus 93 IvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~-t~~Ll~FW~k~gf 171 (196)
T PF13718_consen 93 IVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGA-TPELLKFWQKNGF 171 (196)
T ss_dssp EEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE---HHHHHHHHCTT-
T ss_pred EEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCC-CHHHHHHHHHCCc
Confidence 999999999999999999999999999 35577776655443 4568999999999
Q ss_pred EEeeEEeeccc-CCcceeeEeccCC
Q 028771 145 IRAKRLFRYYL-NGVDAFRLKLLFP 168 (204)
Q Consensus 145 ~~~~~~~~~~~-~~~~~~~m~~~l~ 168 (204)
..+..-..-.. .|+..++|.+.++
T Consensus 172 ~pv~l~~~~n~~SGe~S~imlr~ls 196 (196)
T PF13718_consen 172 VPVYLGQTRNEASGEHSAIMLRPLS 196 (196)
T ss_dssp EEEEE-SS--TTT---EEEEEEE--
T ss_pred EEEEEecCcccccCceeeeEEeecC
Confidence 99886544433 6788888887763
No 60
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.18 E-value=5e-10 Score=79.35 Aligned_cols=129 Identities=21% Similarity=0.294 Sum_probs=88.4
Q ss_pred CCeEEeecC-CCCChHHHHHHHHhhcCCCchHHHHHHHHhh---CCCeEEEEE--ECCeEEEEEEEEecCCCCCceEEEE
Q 028771 18 PEIEYVSYG-GEHHLPLIMNLVDQELSEPYSIFTYRYFVYL---WPHLSFLAF--HKGKCVGTVVCKMGEHRSTFRGYIA 91 (204)
Q Consensus 18 ~~~~~~~~~-~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~--~~g~ivG~~~~~~~~~~~~~~~~i~ 91 (204)
..+.+.... .++-++...+|+++.|+...+ .....+.. ..-.+++.. ...++||-..+....... ..+++.
T Consensus 11 ~~l~~vPiH~rPELlk~~~~LIN~eWPRS~T--sR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~-~al~VE 87 (225)
T KOG3397|consen 11 PDLFFVPLHDRPELLKESMTLINSEWPRSDT--SREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRD-HALWVE 87 (225)
T ss_pred CcceeEeccccHHHHHHHHHHHhccCCccch--hhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCC-ceeEEE
Confidence 334444333 233346666777766653221 11111111 112344443 556899999887775544 378999
Q ss_pred EEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeec
Q 028771 92 MLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRY 153 (204)
Q Consensus 92 ~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~ 153 (204)
.+.|+.+.||+|+|+.||+.++++++..|++.++|.+.. -.+||+++||+...-+..+
T Consensus 88 sVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~D----Q~~FYe~lGYe~c~Pi~~~ 145 (225)
T KOG3397|consen 88 SVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDD----QCRFYESLGYEKCDPIVHS 145 (225)
T ss_pred EEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeeccc----chhhhhhhcccccCceecc
Confidence 999999999999999999999999999999999998875 4579999999986654443
No 61
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=4.6e-09 Score=72.61 Aligned_cols=138 Identities=19% Similarity=0.264 Sum_probs=101.0
Q ss_pred cccccCCCCeEEeecCCCCChHHHHHHHHhhc------CCCchHHHHHHHHhh----CCCeEEEEEEC----------Ce
Q 028771 11 HKAEFDPPEIEYVSYGGEHHLPLIMNLVDQEL------SEPYSIFTYRYFVYL----WPHLSFLAFHK----------GK 70 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~~i~~l~~~~~------~~~~~~~~~~~~~~~----~~~~~~v~~~~----------g~ 70 (204)
+.+......+...+|. +..++...+|+...- ..+.+.+.-.+...+ ..-.+||+.+. ..
T Consensus 5 qNt~i~~~kvILVPYe-~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~ 83 (185)
T KOG4135|consen 5 QNTKILGKKVILVPYE-PCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDH 83 (185)
T ss_pred cccEEecceEEEeecc-ccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhh
Confidence 3445556667777776 888888888776421 234444333332222 33457777632 24
Q ss_pred EEEEEEEEecCCC-------CCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHC
Q 028771 71 CVGTVVCKMGEHR-------STFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRL 142 (204)
Q Consensus 71 ivG~~~~~~~~~~-------~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~ 142 (204)
.||-+.+.....+ ....+++..+.-.|..||+|+|+.++..++.++... ++.+..+.+..+|.++++||+|+
T Consensus 84 MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~ 163 (185)
T KOG4135|consen 84 MVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKF 163 (185)
T ss_pred hccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHh
Confidence 6888877665333 245688888889999999999999999999999876 88899999999999999999999
Q ss_pred CCEEeeE
Q 028771 143 GFIRAKR 149 (204)
Q Consensus 143 GF~~~~~ 149 (204)
+|..+..
T Consensus 164 ~f~q~~~ 170 (185)
T KOG4135|consen 164 LFTQVFY 170 (185)
T ss_pred hheeeee
Confidence 9998876
No 62
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.11 E-value=1.4e-09 Score=91.88 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=70.0
Q ss_pred CCCeEEEEEE---CCeEEEEEEEEecCCC-----CCceEEEEEEE-----------eCcccccCCHHHHHHHHHHHHHHH
Q 028771 58 WPHLSFLAFH---KGKCVGTVVCKMGEHR-----STFRGYIAMLV-----------VIKPYRGRGIATELVTRSIKVMME 118 (204)
Q Consensus 58 ~~~~~~v~~~---~g~ivG~~~~~~~~~~-----~~~~~~i~~l~-----------V~p~~Rg~Gig~~ll~~~~~~~~~ 118 (204)
.+...|+.+. ++.+||++.+...... ....+.|..+. +.++|||+|+|++||+++++.+++
T Consensus 409 ~G~e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~ 488 (522)
T TIGR01211 409 GGTEFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAE 488 (522)
T ss_pred CCCeEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHH
Confidence 3446777775 5789999999876431 11234555555 359999999999999999999999
Q ss_pred cCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 119 SGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 119 ~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
.|++.+.+.. |..|++||+|+||+..+..
T Consensus 489 ~G~~~i~v~s---~~~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 489 EGSEKILVIS---GIGVREYYRKLGYELDGPY 517 (522)
T ss_pred CCCCEEEEee---CchHHHHHHHCCCEEEcce
Confidence 9999988743 6789999999999987754
No 63
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.10 E-value=3e-09 Score=82.30 Aligned_cols=89 Identities=24% Similarity=0.301 Sum_probs=69.0
Q ss_pred CeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 60 HLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 60 ~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
+..|++..+|++|+.+......+. ..+|+ |.++|+|||||+|+.+...++..+.++|.... .++ .|.+|+++-
T Consensus 165 G~Gf~i~~~~~iVs~~~s~~~~~~---~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~-WDc--~N~~S~~lA 237 (265)
T PF12746_consen 165 GFGFCILHDGEIVSGCSSYFVYEN---GIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPS-WDC--HNLASIALA 237 (265)
T ss_dssp --EEEEEETTEEEEEEEEEEEETT---EEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE--EE--SSHHHHHHH
T ss_pred CcEEEEEECCEEEEEEEEEEEECC---EEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcC-eeC--CCHHHHHHH
Confidence 468888999999887766555444 57787 89999999999999999999999999987653 445 699999999
Q ss_pred HHCCCEEeeEEeeccc
Q 028771 140 GRLGFIRAKRLFRYYL 155 (204)
Q Consensus 140 ~k~GF~~~~~~~~~~~ 155 (204)
+|+||+.......|+.
T Consensus 238 ~kLGf~~~~~Y~~Y~v 253 (265)
T PF12746_consen 238 EKLGFHFDFEYTAYEV 253 (265)
T ss_dssp HHCT--EEEEEEEE--
T ss_pred HHcCCcccceeeeeee
Confidence 9999999999888854
No 64
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.05 E-value=2.4e-09 Score=64.09 Aligned_cols=63 Identities=27% Similarity=0.415 Sum_probs=54.5
Q ss_pred EEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEE
Q 028771 63 FLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTL 126 (204)
Q Consensus 63 ~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l 126 (204)
+++..+++++|++.+.+... ....+++..++|+|+|||+|+|+.++..+++++.+.++..+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~-~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGS-GGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCC-CCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 56667899999999988653 2346889999999999999999999999999999988888765
No 65
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=98.96 E-value=3.7e-09 Score=67.54 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=65.6
Q ss_pred ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEE
Q 028771 67 HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIR 146 (204)
Q Consensus 67 ~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~ 146 (204)
.+|.+|..+... + .+++..-++.|+|||||+.+.++....+++.++|+. ++..|..+|..++++.+++||..
T Consensus 6 peG~PVSW~lmd----q---tge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 6 PEGNPVSWSLMD----Q---TGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred CCCCEeEEEEec----c---cccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCee
Confidence 468888887662 2 577888999999999999999999999999999866 89999999999999999999997
Q ss_pred ee
Q 028771 147 AK 148 (204)
Q Consensus 147 ~~ 148 (204)
..
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 65
No 66
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.71 E-value=9.1e-08 Score=75.42 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=73.9
Q ss_pred CCeEEEEEECCeEEEEEEEEec----CCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHH
Q 028771 59 PHLSFLAFHKGKCVGTVVCKMG----EHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKG 134 (204)
Q Consensus 59 ~~~~~v~~~~g~ivG~~~~~~~----~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~ 134 (204)
....+|++++.++++.+...+. .++..+++.|..+++.|+|||+|..++|+.+++....+.|+....|...
T Consensus 38 ~~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P~----- 112 (389)
T COG4552 38 EPNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPF----- 112 (389)
T ss_pred CCcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEeccC-----
Confidence 3457888999999998876543 3345667889999999999999999999999999999999887776543
Q ss_pred HHHHHHHCCCEEeeEEeec
Q 028771 135 ALALYGRLGFIRAKRLFRY 153 (204)
Q Consensus 135 a~~~y~k~GF~~~~~~~~~ 153 (204)
+.+||+|.||+..+.+..+
T Consensus 113 s~~iYrKfGye~asn~~~~ 131 (389)
T COG4552 113 SGGIYRKFGYEYASNYHEL 131 (389)
T ss_pred chhhHhhccccccceEEEe
Confidence 6789999999988774443
No 67
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.68 E-value=4.8e-07 Score=78.73 Aligned_cols=122 Identities=15% Similarity=0.014 Sum_probs=89.9
Q ss_pred hHHHHHHHHhhCCCeEEEEEECC-eEEEEEEEEecCCC---------------------------------CCceEEEEE
Q 028771 47 SIFTYRYFVYLWPHLSFLAFHKG-KCVGTVVCKMGEHR---------------------------------STFRGYIAM 92 (204)
Q Consensus 47 ~~~~~~~~~~~~~~~~~v~~~~g-~ivG~~~~~~~~~~---------------------------------~~~~~~i~~ 92 (204)
+...+.-..+...+..+++..++ .+|+.+.+...... .-..+.|..
T Consensus 457 sP~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvR 536 (758)
T COG1444 457 SPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVR 536 (758)
T ss_pred CHHHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEE
Confidence 44555556666667778877555 88888877654211 122357999
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeeccc-CCcceeeEeccCCCC
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYL-NGVDAFRLKLLFPCP 170 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~~~~~~m~~~l~~~ 170 (204)
|+|+|++|++|||++|++.++++++ .+++.+..... .+..-.+||.|+||.++.--..... .|.-..+|.|.|+..
T Consensus 537 IAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG-~t~~L~rFW~rnGF~pVhls~~rn~~SGeys~i~lkpLs~~ 613 (758)
T COG1444 537 IAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFG-YTEELLRFWLRNGFVPVHLSPTRNASSGEYTAIVLKPLSDA 613 (758)
T ss_pred EEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccC-CCHHHHHHHHHcCeEEEEecCccCcCCCceeEEEEecCCHH
Confidence 9999999999999999999999997 35676655433 3457999999999999987555543 677888888888643
No 68
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.63 E-value=4.4e-07 Score=57.40 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=52.9
Q ss_pred EEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHH
Q 028771 63 FLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGR 141 (204)
Q Consensus 63 ~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k 141 (204)
|.+..+|+.+|++.+.. ......|....|.|++||+|+|+.|++.+++++++.|.+ |...|. -+..++++
T Consensus 2 F~~~~~g~~~a~l~Y~~----~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C~----y~~~~~~~ 71 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE----DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTCS----YVAKYFRR 71 (78)
T ss_dssp EEEESSTTEEEEEEEEE----SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETSH----HHHHHHHH
T ss_pred EEEEECCEEEEEEEEEe----CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEECH----HHHHHHHh
Confidence 44566788999999966 223688899999999999999999999999999999854 433333 36666654
No 69
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.63 E-value=6.5e-07 Score=61.00 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=60.7
Q ss_pred HHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEE
Q 028771 48 IFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLE 127 (204)
Q Consensus 48 ~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~ 127 (204)
.+.+...+ ......|++.-|++++|.+.+..... .+.|..++|.+-=||+|+|..|++.+...+. +++...+.
T Consensus 27 ~~~l~~~l-~~~~~l~aArFNdRlLgAv~v~~~~~----~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~ 99 (128)
T PF12568_consen 27 PEQLEQWL-DEGHRLFAARFNDRLLGAVKVTISGQ----QAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLA 99 (128)
T ss_dssp ----------SSEEEEEEEETTEEEEEEEEEEETT----EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE-
T ss_pred HHHHHHHh-ccCCeEEEEEechheeeeEEEEEcCc----ceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEe
Confidence 33343333 34567888999999999999877542 5889999999999999999999999988884 45655554
Q ss_pred Eec---CC-HHHHHHHHHCCCEEe
Q 028771 128 AEV---TN-KGALALYGRLGFIRA 147 (204)
Q Consensus 128 ~~~---~N-~~a~~~y~k~GF~~~ 147 (204)
... .+ ..+.+|.+.+||...
T Consensus 100 ~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 100 DEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp -TT-S--THHHHHHHHHHHT-EE-
T ss_pred cCCCcccchHHHHHHHHHcCcccc
Confidence 432 23 456789999999654
No 70
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=1.2e-06 Score=64.85 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=105.0
Q ss_pred CeEEeecCCCCChHHHHHHHHhhcCCC----chHHHHHHHHhhCCCeEEEEEEC-CeEEEEEEEEecCCCCCceEEEEEE
Q 028771 19 EIEYVSYGGEHHLPLIMNLVDQELSEP----YSIFTYRYFVYLWPHLSFLAFHK-GKCVGTVVCKMGEHRSTFRGYIAML 93 (204)
Q Consensus 19 ~~~~~~~~~~~d~~~i~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~-g~ivG~~~~~~~~~~~~~~~~i~~l 93 (204)
.+.+++...+.++++..++....|... ...+.+. .+...+...+.++.+ |++||.+..+|.........+-+.+
T Consensus 2 ~vvvrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~-al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~ 80 (266)
T COG3375 2 KVVVRRLTDPAELDEAEDVQASAWGSEDRDGAPADTIR-ALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHML 80 (266)
T ss_pred ceeEEecCCHHHHHHHHHHHHHHhCccccccchHHHHH-HHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeeh
Confidence 356678888999999999999888632 2223333 334467788889855 5999999998843333446677789
Q ss_pred EeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHH-HHHCCCEEeeEEeeccc
Q 028771 94 VVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALAL-YGRLGFIRAKRLFRYYL 155 (204)
Q Consensus 94 ~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~-y~k~GF~~~~~~~~~~~ 155 (204)
+|.|++|+.|+|-.|-..-.+++.+.|+..+..+.+|-|.---.| ..|+|-.-...+++||+
T Consensus 81 gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nfYg 143 (266)
T COG3375 81 GVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNFYG 143 (266)
T ss_pred hccccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEeeccccc
Confidence 999999999999999999999999999999999888887433333 57899888888888886
No 71
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.58 E-value=3.7e-07 Score=61.95 Aligned_cols=120 Identities=20% Similarity=0.206 Sum_probs=86.7
Q ss_pred CCChHHHHHHHHhhcC-CCc-hHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecC------------CCCCceEEEEEE
Q 028771 28 EHHLPLIMNLVDQELS-EPY-SIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGE------------HRSTFRGYIAML 93 (204)
Q Consensus 28 ~~d~~~i~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~------------~~~~~~~~i~~l 93 (204)
..|.+.+..|.++.-. -.| ..+.+...+.. .|++..+|.+.|+....-.. .......||..+
T Consensus 15 apd~aavLaLNNeha~elswLe~erL~~l~~e----AF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErYe~F~YvDRv 90 (167)
T COG3818 15 APDLAAVLALNNEHALELSWLELERLYRLYKE----AFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERYENFFYVDRV 90 (167)
T ss_pred CCchhhHHhccchhhhhccccCHHHHHHHHHH----HHHHhhccchhhheeeccccccCCCCceeehhhhCCceEEEEEE
Confidence 5588889888886432 223 23333333333 25666666666665432211 112346789999
Q ss_pred EeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEE--ecCCHHHHHHHHHCCCEEeeEEe
Q 028771 94 VVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEA--EVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 94 ~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~--~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
.|....||+|+|++|-+.+.+++...|+..+...| ++.|+++..|-..+||.+++...
T Consensus 91 VVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 91 VVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred EEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 99999999999999999999999999988877765 57899999999999999998743
No 72
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.48 E-value=2.3e-07 Score=64.71 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=80.6
Q ss_pred ecCCCCChHHHHHHHHhhcCCCc--hHHHHHHHHhhCCCeEEEE---------EECCeEEEEEEEEecCCC---------
Q 028771 24 SYGGEHHLPLIMNLVDQELSEPY--SIFTYRYFVYLWPHLSFLA---------FHKGKCVGTVVCKMGEHR--------- 83 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~v~---------~~~g~ivG~~~~~~~~~~--------- 83 (204)
+..-+++..++..|-...|+... +.+...+.+.+-+..+... .-.|.+||.+.....+..
T Consensus 15 rp~i~e~~q~~~~Lea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~E~lt~ESm~k 94 (190)
T KOG4144|consen 15 RPGIPESCQRRHTLEASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDKERLTQESMTK 94 (190)
T ss_pred CCCChHHHHHHhccccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcchhhhHHHHhh
Confidence 33446667777777666665332 2233333333333332222 226788998866554221
Q ss_pred ---CCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 84 ---STFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 84 ---~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
......|..++|+|+||.+|.|+.|+...++...+. -..++.|.+.. +.+.||+++||+.++..
T Consensus 95 h~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~---pLvPFYEr~gFk~vgp~ 162 (190)
T KOG4144|consen 95 HRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHD---PLVPFYERFGFKAVGPC 162 (190)
T ss_pred hhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecC---CccchhHhcCceeeccc
Confidence 233478999999999999999999999988777665 33455554443 58899999999998863
No 73
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.43 E-value=1.4e-06 Score=57.21 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=53.2
Q ss_pred CCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCc
Q 028771 58 WPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCE 122 (204)
Q Consensus 58 ~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~ 122 (204)
.....++..++|..+|.+........ ...|....|.+++||||+|+.|+..+++.+++.|.+
T Consensus 13 ~~~~~y~~~~~G~~~~e~~y~~~~~~---~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k 74 (99)
T COG2388 13 GENGRYVLTDEGEVIGEATYYDRGEN---LIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK 74 (99)
T ss_pred cCceEEEEecCCcEEEEEEEecCCCC---EEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe
Confidence 34567888899999999988765433 678999999999999999999999999999999864
No 74
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.30 E-value=8e-06 Score=63.10 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=68.0
Q ss_pred eEEEEE-ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 61 LSFLAF-HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 61 ~~~v~~-~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
.+.+++ +++++||++++.- --|-.++|+|.+||-|++-+|+.++++.+.++|..++.+.+-+. ..+||
T Consensus 37 ~~v~~~~~~~~iiacGsiaG--------nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~---~~~lF 105 (352)
T COG3053 37 YFVAIYRDNEEIIACGSIAG--------NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPE---YAALF 105 (352)
T ss_pred EEEEEEcCCCcEEEeccccc--------ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechh---HHHHH
Confidence 344555 5599999998741 23778999999999999999999999999999999999999886 66899
Q ss_pred HHCCCEEeeEEee
Q 028771 140 GRLGFIRAKRLFR 152 (204)
Q Consensus 140 ~k~GF~~~~~~~~ 152 (204)
+.+||........
T Consensus 106 k~~GF~~i~~~~~ 118 (352)
T COG3053 106 KQCGFSEIASAEN 118 (352)
T ss_pred HhCCceEeeccCc
Confidence 9999999876543
No 75
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.22 E-value=6.4e-05 Score=55.41 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=87.8
Q ss_pred CChHHHHHHHHhhcCC--CchHHHH----HHHHhhCCCeEEEEEECCeEEEEEEEEecCCC------------------C
Q 028771 29 HHLPLIMNLVDQELSE--PYSIFTY----RYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHR------------------S 84 (204)
Q Consensus 29 ~d~~~i~~l~~~~~~~--~~~~~~~----~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~------------------~ 84 (204)
++++++..+-...|.+ .|..... .+.++.....++++.++|+++|++.+.+...+ .
T Consensus 8 ~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~ 87 (182)
T PF00765_consen 8 RLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRS 87 (182)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCC
Confidence 3456677777777653 3543221 12233344456677788999999999886221 2
Q ss_pred CceEEEEEEEeCccccc------CCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCCc
Q 028771 85 TFRGYIAMLVVIKPYRG------RGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGV 158 (204)
Q Consensus 85 ~~~~~i~~l~V~p~~Rg------~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~ 158 (204)
...+++..++|+++.++ .-+...|+..+.+++.+.|++.+..-+.. +..+++++.||.....-.....++.
T Consensus 88 ~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~---~~~r~l~r~G~~~~~lG~~~~~~~~ 164 (182)
T PF00765_consen 88 PDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDP---AMERILRRAGWPVRRLGPPRSIGGE 164 (182)
T ss_dssp TTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEH---HHHHHHHHCT-EEEESSEEEEETTE
T ss_pred CcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEECh---HHHHHHHHcCCceEECCCCeeeCCe
Confidence 56899999999998542 24778999999999999999999877765 6999999999997654333323344
Q ss_pred ceeeEec
Q 028771 159 DAFRLKL 165 (204)
Q Consensus 159 ~~~~m~~ 165 (204)
..+....
T Consensus 165 ~~~a~~i 171 (182)
T PF00765_consen 165 RVVALLI 171 (182)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4444333
No 76
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.18 E-value=2.4e-05 Score=52.39 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=62.2
Q ss_pred eEEEEEECCeEEEEEEEEecCCC-CCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 61 LSFLAFHKGKCVGTVVCKMGEHR-STFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 61 ~~~v~~~~g~ivG~~~~~~~~~~-~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
..|...-+|.+|||+.+.-.... ......+..+.+...|||+|+|++..+++...... .-.+.+.++|.+|+.||
T Consensus 38 ~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~g----~w~Va~i~EN~PA~~fw 113 (143)
T COG5628 38 EAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAWG----VWQVATVRENTPARAFW 113 (143)
T ss_pred ceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhhc----eEEEEEeccCChhHHHH
Confidence 46777789999999987655432 22235577889999999999999999988766542 23456788999999999
Q ss_pred HHCCCEE
Q 028771 140 GRLGFIR 146 (204)
Q Consensus 140 ~k~GF~~ 146 (204)
++.=.+.
T Consensus 114 K~~~~t~ 120 (143)
T COG5628 114 KRVAETY 120 (143)
T ss_pred Hhhhccc
Confidence 9976653
No 77
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=98.17 E-value=0.00011 Score=51.38 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=79.2
Q ss_pred CeEEeecCCCCChHHHHHHHHhhcC-------CCchHHHHHHHHhhC----CCeEEEEEECCeEEEEEEEEecCCCCCce
Q 028771 19 EIEYVSYGGEHHLPLIMNLVDQELS-------EPYSIFTYRYFVYLW----PHLSFLAFHKGKCVGTVVCKMGEHRSTFR 87 (204)
Q Consensus 19 ~~~~~~~~~~~d~~~i~~l~~~~~~-------~~~~~~~~~~~~~~~----~~~~~v~~~~g~ivG~~~~~~~~~~~~~~ 87 (204)
.+.+.....+++++.+.+++...+. .+.+.+.+...+... ....+++..+|++||+.......+ .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~~~----~ 94 (142)
T PF13480_consen 19 GVRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRHGG----T 94 (142)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEECC----E
Confidence 4555555567788888888765432 234566666665542 234666778999999997766442 4
Q ss_pred EEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEe
Q 028771 88 GYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAE 129 (204)
Q Consensus 88 ~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~ 129 (204)
.+....+++|+++..+.|..|+..+++++.+.|++.+.+...
T Consensus 95 ~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 95 LYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 667778899999999999999999999999999988877553
No 78
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.06 E-value=7.8e-06 Score=54.28 Aligned_cols=44 Identities=34% Similarity=0.634 Sum_probs=40.8
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCC
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGF 144 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF 144 (204)
++|+|++||+|+|+.|+..+++++...|+. .|..+..+|++.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 999999999999999999999999987665 67789999999999
No 79
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=98.03 E-value=0.00024 Score=51.99 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=73.4
Q ss_pred CCChHHHHHHHHhhcCCCchHHHHHHHHhhCCC-eEE--EEE-ECCeEEEEEEEEecCC----CCCceEEEEEEEeCccc
Q 028771 28 EHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPH-LSF--LAF-HKGKCVGTVVCKMGEH----RSTFRGYIAMLVVIKPY 99 (204)
Q Consensus 28 ~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~--v~~-~~g~ivG~~~~~~~~~----~~~~~~~i~~l~V~p~~ 99 (204)
.+-++++..+.... ...+-...+..+....+. ..+ ++. ...++|+.+.+..... ...+...++..++.|+|
T Consensus 12 ~e~~d~fmk~~g~~-r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~y 90 (181)
T PF06852_consen 12 QEYFDQFMKLHGNE-RWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEY 90 (181)
T ss_pred HHHHHHHHHHhcCC-cccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcc
Confidence 34456666666542 223345556666666554 332 222 4467888888865422 23567899999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 100 RGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 100 Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
||+|+++.+-..+.+.....+ ....+. .|..+.++|.+ +||...+.
T Consensus 91 Rg~~~~kl~~~~~~~~~~~~~-~N~~~~---~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 91 RGKGIMKLQDDICMDELDSVD-DNSVAQ---GNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred cCcchHHHHHHHHHHHhccCC-Cceeee---cCHHHHHHHHHHhCCCCCcc
Confidence 999999755555555554433 333332 34468889976 89888775
No 80
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.90 E-value=0.0004 Score=49.37 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=74.9
Q ss_pred CCCeEEe--ecCCCCChHHHHHHHHhhcC--------CCchHHHHHHHHhhCC---CeEEEEE--ECCeEEEEEEEEecC
Q 028771 17 PPEIEYV--SYGGEHHLPLIMNLVDQELS--------EPYSIFTYRYFVYLWP---HLSFLAF--HKGKCVGTVVCKMGE 81 (204)
Q Consensus 17 ~~~~~~~--~~~~~~d~~~i~~l~~~~~~--------~~~~~~~~~~~~~~~~---~~~~v~~--~~g~ivG~~~~~~~~ 81 (204)
+..+... ...++.++.++.++.+..+- ..||.+++...+...+ ...+.+- .++++|||+...+..
T Consensus 21 P~gF~W~~~dl~d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~ 100 (162)
T PF01233_consen 21 PDGFEWSTLDLNDDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPAT 100 (162)
T ss_dssp STTEEEEE--TTSHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEE
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEE
Confidence 3344443 34455667778888877653 2578888888877533 2344544 479999999987762
Q ss_pred ----CCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEE
Q 028771 82 ----HRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTL 126 (204)
Q Consensus 82 ----~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l 126 (204)
+......+|-.++|++++|+++++-.|+.++...+...|+-....
T Consensus 101 irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAvy 149 (162)
T PF01233_consen 101 IRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAVY 149 (162)
T ss_dssp EEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEEE
T ss_pred EEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeeee
Confidence 234567899999999999999999999999999998887654433
No 81
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.62 E-value=0.0011 Score=51.08 Aligned_cols=118 Identities=21% Similarity=0.112 Sum_probs=81.8
Q ss_pred CCCCChHHHHHHHHhhcCC--CchH------HHHHHHHhhCCCeEEEEEE--CCeEEEEEEEEecC--------------
Q 028771 26 GGEHHLPLIMNLVDQELSE--PYSI------FTYRYFVYLWPHLSFLAFH--KGKCVGTVVCKMGE-------------- 81 (204)
Q Consensus 26 ~~~~d~~~i~~l~~~~~~~--~~~~------~~~~~~~~~~~~~~~v~~~--~g~ivG~~~~~~~~-------------- 81 (204)
.+..++..+..+...+|-. .|.. ..-.+.++. ....+++.+ +|++||++.+.+..
T Consensus 14 ~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~-~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~ 92 (241)
T TIGR03694 14 VTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDA-HSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHC 92 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCC-CCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHh
Confidence 3445567788888877642 3321 111112222 334555553 58999999997631
Q ss_pred -C------------CCCceEEEEEEEeCcccccC--------C--------------------HHHHHHHHHHHHHHHcC
Q 028771 82 -H------------RSTFRGYIAMLVVIKPYRGR--------G--------------------IATELVTRSIKVMMESG 120 (204)
Q Consensus 82 -~------------~~~~~~~i~~l~V~p~~Rg~--------G--------------------ig~~ll~~~~~~~~~~g 120 (204)
. .....++++.++|++++|++ | +...|+..+.+++.+.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~G 172 (241)
T TIGR03694 93 SHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANG 172 (241)
T ss_pred ccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCC
Confidence 0 12458999999999999974 2 56779999999999999
Q ss_pred CcEEEEEEecCCHHHHHHHHHCCCEEe
Q 028771 121 CEEVTLEAEVTNKGALALYGRLGFIRA 147 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k~GF~~~ 147 (204)
++.++..+.+ +..++++++|+...
T Consensus 173 i~~~~~v~~~---~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 173 ITHWYAIMEP---RLARLLSRFGIQFR 196 (241)
T ss_pred CcEEEEEeCH---HHHHHHHHhCCceE
Confidence 9999887776 58889999998764
No 82
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.62 E-value=0.0022 Score=48.37 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=79.4
Q ss_pred CChHHHHHHHHhhcCC--CchHHH----HHHHHhhCCCeEEEEE-ECCeEEEEEEEEecCC------------------C
Q 028771 29 HHLPLIMNLVDQELSE--PYSIFT----YRYFVYLWPHLSFLAF-HKGKCVGTVVCKMGEH------------------R 83 (204)
Q Consensus 29 ~d~~~i~~l~~~~~~~--~~~~~~----~~~~~~~~~~~~~v~~-~~g~ivG~~~~~~~~~------------------~ 83 (204)
+++.++..+-..+|.+ +|.... -.+.++.....++++. ++|+++|++.+.+... .
T Consensus 16 ~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~ 95 (207)
T PRK13834 16 SLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNA 95 (207)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCC
Confidence 3456677777776653 343211 1122333333455555 5789999998866511 1
Q ss_pred CCceEEEEEEEeCcccccC---C----HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEee
Q 028771 84 STFRGYIAMLVVIKPYRGR---G----IATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 84 ~~~~~~i~~l~V~p~~Rg~---G----ig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
....++++.++|+++++.. + +...|+..+.+++...|++.++.-+.+ ...++++++||....
T Consensus 96 ~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~---~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 96 HPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDL---RFERILARAGWPMQR 164 (207)
T ss_pred CCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHHHcCCCeEE
Confidence 2468999999999986322 2 567899999999999999998877665 578899999987643
No 83
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.39 E-value=0.0079 Score=44.69 Aligned_cols=135 Identities=19% Similarity=0.083 Sum_probs=87.0
Q ss_pred ChHHHHHHHHhhcCC--CchH----HHHHHHHhhCCCeEEEE-EECCeEEEEEEEEecCC------------------CC
Q 028771 30 HLPLIMNLVDQELSE--PYSI----FTYRYFVYLWPHLSFLA-FHKGKCVGTVVCKMGEH------------------RS 84 (204)
Q Consensus 30 d~~~i~~l~~~~~~~--~~~~----~~~~~~~~~~~~~~~v~-~~~g~ivG~~~~~~~~~------------------~~ 84 (204)
-++++..+-...|.+ .|.. ..-.+.+++..-.++++ ..+|+++|++.+.+... ..
T Consensus 16 ~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~ 95 (209)
T COG3916 16 ALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSS 95 (209)
T ss_pred HHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCC
Confidence 355666666666542 2311 11122333444456666 58999999999987611 12
Q ss_pred CceEEEEEEEeCc--ccccCC----HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCCc
Q 028771 85 TFRGYIAMLVVIK--PYRGRG----IATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGV 158 (204)
Q Consensus 85 ~~~~~i~~l~V~p--~~Rg~G----ig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~ 158 (204)
...++...++|+. .-|+.| ++..|+.-+++++.+.|++.|..-++. +..+.+++.||.....-..-...+.
T Consensus 96 p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~---~meril~r~Gw~~~riG~~~~ig~~ 172 (209)
T COG3916 96 PGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDT---GMERILRRAGWPLTRIGPPLTIGNE 172 (209)
T ss_pred CCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEch---HHHHHHHHcCCCeEEcCCceeeCCe
Confidence 3578999998887 444433 478899999999999999999877765 6999999999987654222222233
Q ss_pred ceeeEeccC
Q 028771 159 DAFRLKLLF 167 (204)
Q Consensus 159 ~~~~m~~~l 167 (204)
.++.....+
T Consensus 173 ~~VA~~l~i 181 (209)
T COG3916 173 RAVALLLDI 181 (209)
T ss_pred eEEEEEeec
Confidence 444444444
No 84
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=97.27 E-value=0.01 Score=45.54 Aligned_cols=83 Identities=18% Similarity=0.082 Sum_probs=62.1
Q ss_pred chHHHHHHHHhhCCCeE-EEEE-ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcE
Q 028771 46 YSIFTYRYFVYLWPHLS-FLAF-HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEE 123 (204)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-~v~~-~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~ 123 (204)
.+...+..++....... ++.+ .+|++||++.+....+. ..-| ...-+|++-.+++|+..+..-++.|++.|.+.
T Consensus 128 ~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d~---lSAV-Y~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y 203 (240)
T PRK01305 128 PSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDDG---LSAV-YTFYDPDEEHRSLGTFAILWQIELAKRLGLPY 203 (240)
T ss_pred CCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCCc---eeeE-EEeeCCCccccCCHHHHHHHHHHHHHHcCCCe
Confidence 45677777776644333 3333 79999999999777655 1112 25679999999999999999999999999999
Q ss_pred EEEEEecCC
Q 028771 124 VTLEAEVTN 132 (204)
Q Consensus 124 i~l~~~~~N 132 (204)
++|.-...+
T Consensus 204 ~YLGY~I~~ 212 (240)
T PRK01305 204 VYLGYWIKG 212 (240)
T ss_pred EeeeEEECC
Confidence 999655443
No 85
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=97.26 E-value=0.0043 Score=42.94 Aligned_cols=80 Identities=20% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHhhCCC-eEEEE-EECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEE
Q 028771 48 IFTYRYFVYLWPH-LSFLA-FHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVT 125 (204)
Q Consensus 48 ~~~~~~~~~~~~~-~~~v~-~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~ 125 (204)
...+..++..... ...+. ..+|++||++.+...++.- .-|- ..-+|++....+|+..+-.-++.|++.|.+.++
T Consensus 25 ~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~gl---SaVY-~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 25 QEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDGL---SAVY-TFYDPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred HHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccchh---hhee-eeeCCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 5666666654333 33333 3899999999887766541 1122 456999999999999999999999999999999
Q ss_pred EEEecC
Q 028771 126 LEAEVT 131 (204)
Q Consensus 126 l~~~~~ 131 (204)
|.=...
T Consensus 101 LGY~I~ 106 (128)
T PF04377_consen 101 LGYWIH 106 (128)
T ss_pred eCeEeC
Confidence 854433
No 86
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=97.21 E-value=0.0083 Score=48.48 Aligned_cols=120 Identities=9% Similarity=0.071 Sum_probs=87.3
Q ss_pred CCChHHHHHHHHhhcC----CCchHHHHHHHHhhCCC--eEEEEE-ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccc
Q 028771 28 EHHLPLIMNLVDQELS----EPYSIFTYRYFVYLWPH--LSFLAF-HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYR 100 (204)
Q Consensus 28 ~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~v~~-~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~R 100 (204)
.+|++...+++..... ...+.+.+.......+. ..+++. .+|++||.+.+....+. .+....+..+++|
T Consensus 157 ~~~l~~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~~~~----~~~~~~g~~~~~~ 232 (330)
T TIGR03019 157 DGDLDRFYDVYAENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYFRDE----VLPYYAGGLREAR 232 (330)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEeCCE----EEEEeccChHHHH
Confidence 3568888887776543 23567777776654332 345566 68999988776554322 2222456789999
Q ss_pred cCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 101 GRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
+.+-+..|+-++++++.+.|++...+.....|.+..+|=++.||+.+...-
T Consensus 233 ~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~ 283 (330)
T TIGR03019 233 DVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHY 283 (330)
T ss_pred hhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeeccceE
Confidence 999999999999999999999999987766666777788889999876543
No 87
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.16 E-value=0.00067 Score=41.51 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=26.5
Q ss_pred eEEEEEEEeCcccccCCHHHHHHHHHHHHH
Q 028771 87 RGYIAMLVVIKPYRGRGIATELVTRSIKVM 116 (204)
Q Consensus 87 ~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~ 116 (204)
.+-|..|.|+|.+|++|||+.||+.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 456889999999999999999999987764
No 88
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.09 E-value=0.023 Score=45.85 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=71.2
Q ss_pred EEeecCCCCChHHHHHHHHhhcC----CCchHHHHHHHHh------------h--CCCeEEEEEE--CCeEEEEEEEEec
Q 028771 21 EYVSYGGEHHLPLIMNLVDQELS----EPYSIFTYRYFVY------------L--WPHLSFLAFH--KGKCVGTVVCKMG 80 (204)
Q Consensus 21 ~~~~~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~------------~--~~~~~~v~~~--~g~ivG~~~~~~~ 80 (204)
.+++.+...|++.+.++....-. -|...+.+...+. . ...+.||.++ .|++||++.+.-.
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a~ 81 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEAA 81 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEESS
T ss_pred eEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEec
Confidence 45677889999999999887532 1222333222221 1 1234666664 5999999988654
Q ss_pred CCC---------------------------------CCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHH---cCCcEE
Q 028771 81 EHR---------------------------------STFRGYIAMLVVIKPYRGRGIATELVTRSIKVMME---SGCEEV 124 (204)
Q Consensus 81 ~~~---------------------------------~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~---~g~~~i 124 (204)
-.. -....+|+.++++|+||+.|.|+.|-..-.=.+.+ +=.+++
T Consensus 82 vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~v 161 (342)
T PF04958_consen 82 VGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRV 161 (342)
T ss_dssp TTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEE
T ss_pred cCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchhe
Confidence 110 12235799999999999999999988765554433 323455
Q ss_pred EEEEe--cCCHHHHHHHHHCCCEEee
Q 028771 125 TLEAE--VTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 125 ~l~~~--~~N~~a~~~y~k~GF~~~~ 148 (204)
..... .+-.+--.||+.+|=+..+
T Consensus 162 iAElrG~~De~G~SPFWdalG~~FF~ 187 (342)
T PF04958_consen 162 IAELRGVSDEDGRSPFWDALGRHFFD 187 (342)
T ss_dssp EEE--B---TT---HHHHHTGGGTS-
T ss_pred eeeccCCcCCCCCCchHHHhhccccC
Confidence 55443 2223567899999966543
No 89
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=97.04 E-value=0.0069 Score=39.95 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=51.0
Q ss_pred EEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 62 SFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 62 ~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
.+-++.++...|++.+.+... .....+|+.++|.+..||.|+|..|+..+.+.. ..+...+.++|+ ..++|
T Consensus 10 ~~~~y~~e~y~~~aIvt~~~~-~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~-----~~L~Wrsr~~n~-~n~Wy 80 (99)
T cd04264 10 LHAIYLSEGYNAAAIVTYEGV-NNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF-----PKLFWRSRKTNP-INPWY 80 (99)
T ss_pred ceEEEEeCCceEEEEEeccCC-CCCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCc-ccceE
Confidence 445556666777777765432 234789999999999999999999999887652 556777777664 33444
No 90
>PRK14852 hypothetical protein; Provisional
Probab=96.94 E-value=0.0077 Score=54.75 Aligned_cols=150 Identities=12% Similarity=0.046 Sum_probs=102.5
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHhhcC-CCch-----HHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCC-------
Q 028771 16 DPPEIEYVSYGGEHHLPLIMNLVDQELS-EPYS-----IFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEH------- 82 (204)
Q Consensus 16 ~~~~~~~~~~~~~~d~~~i~~l~~~~~~-~~~~-----~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~------- 82 (204)
...+..++.-.+.++..++..|....+. .++. ...+..+-......+|++...+.+||...+.+...
T Consensus 25 ~ldr~~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D 104 (989)
T PRK14852 25 ALDRPAIKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMD 104 (989)
T ss_pred hccCcceeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHH
Confidence 3344555555677777888887776542 2222 11111111112234577766677788887776633
Q ss_pred ------------CCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 83 ------------RSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 83 ------------~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
.+...++++.++++++.|.+-+--.+++.+..++...++..+.+.|.|. =..||++ +||+..+.
T Consensus 105 ~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPk---H~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 105 TLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPK---HVKFYTDIFLFKPFGE 181 (989)
T ss_pred HHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcc---hHHHHHHHhCCccccc
Confidence 1357899999999999998887778888888887777999999999886 4579985 99999998
Q ss_pred EeecccCCcceeeEeccCC
Q 028771 150 LFRYYLNGVDAFRLKLLFP 168 (204)
Q Consensus 150 ~~~~~~~~~~~~~m~~~l~ 168 (204)
...|..-+.+++.|...++
T Consensus 182 ~r~~p~VnaPAvll~~dl~ 200 (989)
T PRK14852 182 VRHYDTVDAPAVALRIDLH 200 (989)
T ss_pred cccCCCCCcchhheecCHH
Confidence 7666444467888877774
No 91
>PRK10456 arginine succinyltransferase; Provisional
Probab=96.87 E-value=0.018 Score=46.34 Aligned_cols=93 Identities=14% Similarity=0.064 Sum_probs=60.9
Q ss_pred EEeecCCCCChHHHHHHHHhhcC----CCchHHHHHHHHh------------hCCCeEEEEEE--CCeEEEEEEEEecCC
Q 028771 21 EYVSYGGEHHLPLIMNLVDQELS----EPYSIFTYRYFVY------------LWPHLSFLAFH--KGKCVGTVVCKMGEH 82 (204)
Q Consensus 21 ~~~~~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~------------~~~~~~~v~~~--~g~ivG~~~~~~~~~ 82 (204)
.+++.....|++.+.++....-. -|...+.+...+. ....+.||.++ .|++||++.+...-.
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG 81 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVG 81 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 45677889999999999886432 1222333322221 12335666664 689999998865410
Q ss_pred ---------------------------------CCCceEEEEEEEeCcccccCCHHHHHHHHHH
Q 028771 83 ---------------------------------RSTFRGYIAMLVVIKPYRGRGIATELVTRSI 113 (204)
Q Consensus 83 ---------------------------------~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~ 113 (204)
.-....+|+.++++|+||+.|.|+.|-+.-.
T Consensus 82 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~Rf 145 (344)
T PRK10456 82 LNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRF 145 (344)
T ss_pred CCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHH
Confidence 0122357999999999999999988866543
No 92
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=96.83 E-value=0.0054 Score=48.06 Aligned_cols=64 Identities=11% Similarity=0.216 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCCcceeeEeccCCCC
Q 028771 103 GIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLFPCP 170 (204)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~~~l~~~ 170 (204)
|-...|+..+.+.|++.|+.+|.+.+..+ ...+|++.||..++.++.|+.. .+++.|.+.+...
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~f~g-~~~~~~~~~~~~~ 84 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGS---DKPLFEERGYLEEAKIPGYFNG-HDAYFMSKYLDED 84 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHH---HHHHHHHCCCeEEEecccccCC-CceEEEEEcCchH
Confidence 45889999999999999999999999876 5789999999999999998854 7999999999764
No 93
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=96.81 E-value=0.018 Score=46.25 Aligned_cols=90 Identities=14% Similarity=0.014 Sum_probs=58.7
Q ss_pred eecCCCCChHHHHHHHHhhcC----CCchHHHHHHHHh------------hCCCeEEEEEE--CCeEEEEEEEEecCC--
Q 028771 23 VSYGGEHHLPLIMNLVDQELS----EPYSIFTYRYFVY------------LWPHLSFLAFH--KGKCVGTVVCKMGEH-- 82 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~~------------~~~~~~~v~~~--~g~ivG~~~~~~~~~-- 82 (204)
++.+...|++.+.++....-. -|...+.+...+. ....+.||.++ .|++||++.+...-.
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~ 81 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLE 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 466778999999999886431 1222333332221 12345666664 689999998865410
Q ss_pred -------------------------------CCCceEEEEEEEeCcccccCCHHHHHHHHH
Q 028771 83 -------------------------------RSTFRGYIAMLVVIKPYRGRGIATELVTRS 112 (204)
Q Consensus 83 -------------------------------~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~ 112 (204)
.-....+|+.++++|+||+.|.|+.|-+.-
T Consensus 82 ~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~R 142 (336)
T TIGR03244 82 EPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSR 142 (336)
T ss_pred CCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHH
Confidence 012235799999999999999998876543
No 94
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.75 E-value=0.0027 Score=52.52 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=61.1
Q ss_pred CeEEEEEE---CCeEEEEEEEEecCCCC------------------CceEEEEEEEeCcccccCCHHHHHHHHHHHHHHH
Q 028771 60 HLSFLAFH---KGKCVGTVVCKMGEHRS------------------TFRGYIAMLVVIKPYRGRGIATELVTRSIKVMME 118 (204)
Q Consensus 60 ~~~~v~~~---~g~ivG~~~~~~~~~~~------------------~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~ 118 (204)
...|+.+. ++.++|+..+....... ....-|+. . ...||++|+|+.||+.++..|++
T Consensus 404 ~e~Fls~ed~~~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~-~-~~~~QH~G~G~~L~~~AE~ia~e 481 (515)
T COG1243 404 TEIFLSYEDPKNDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGK-R-EDEWQHRGYGRELLEEAERIARE 481 (515)
T ss_pred EEEEeecccchhhhhhheeeecccccchhhhhcccchhhhhhhhcccccccccc-C-cchhhcccHHHHHHHHHHHHHHh
Confidence 34555553 36789999887653310 11112343 2 57899999999999999999999
Q ss_pred cCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 119 SGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 119 ~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
.+.++|.+.... ++...|+|+||...+-
T Consensus 482 e~~~ki~viSgi---G~ReYy~k~GY~~~gp 509 (515)
T COG1243 482 EGAKKILVISGI---GVREYYRKLGYELDGP 509 (515)
T ss_pred hccccEEEEecc---cHHHHHHHhCccccCC
Confidence 988877665444 5999999999998763
No 95
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=96.75 E-value=0.1 Score=38.05 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=73.0
Q ss_pred ChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEec-CCCCCceEEEEEEEeCcccccCCHHHHH
Q 028771 30 HLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMG-EHRSTFRGYIAMLVVIKPYRGRGIATEL 108 (204)
Q Consensus 30 d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~-~~~~~~~~~i~~l~V~p~~Rg~Gig~~l 108 (204)
|.+.+.+++...+....+.+.+...+.......++ +|..-|.+.+.+. ........++..++|.+..||.|++..+
T Consensus 33 d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~---d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D~v 109 (170)
T PF04768_consen 33 DLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYV---DEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVADNV 109 (170)
T ss_dssp -HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEE---ETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHHHH
T ss_pred CHHHHHHHHHhcccccccHHHHHHHhhccceEEEE---eCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHHHH
Confidence 88999999999996666777777777665444444 3333344444432 2334458999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCHHHHHHH--HHCCCEEee
Q 028771 109 VTRSIKVMMESGCEEVTLEAEVTNKGALALY--GRLGFIRAK 148 (204)
Q Consensus 109 l~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y--~k~GF~~~~ 148 (204)
...+.+.. ..+...+..+| +..++| ++-|+-...
T Consensus 110 f~~i~~d~-----p~L~Wrsr~~n-~~~~Wyf~rs~G~~~~~ 145 (170)
T PF04768_consen 110 FNAIRKDF-----PKLFWRSREDN-PNNKWYFERSDGSFKRN 145 (170)
T ss_dssp HHHHHHH------SSEEEEEETT--TTHHHHHHH-SEEEEET
T ss_pred HHHHHHhc-----cceEEEecCCC-CcccEEEEeeEEEEECC
Confidence 99985544 33667777766 477777 457776633
No 96
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.67 E-value=0.017 Score=38.14 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=47.2
Q ss_pred EEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 62 SFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 62 ~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
.+-++.++..=|++.+.+... ....+|+.++|.+..||.|+|..|+..+.+.. ..+...+.++|+ ..++|
T Consensus 11 ~~~~y~~e~y~~~aivt~~~~--~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~-----~~L~Wrsr~~n~-~n~Wy 80 (99)
T cd04265 11 LHTIYLSEGYNAAAIVTNEEV--DGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF-----PKLFWRSRSTNP-INPWY 80 (99)
T ss_pred ceEEEEeCCCcEEEEEeccCC--CCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCc-ccceE
Confidence 344444554555555544321 24689999999999999999999999887653 446667776664 33444
No 97
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=96.63 E-value=0.0098 Score=47.64 Aligned_cols=93 Identities=16% Similarity=0.034 Sum_probs=59.0
Q ss_pred eecCCCCChHHHHHHHHhhcC----CCc-----------hHHHHHHHHh-hCCCeEEEEEE--CCeEEEEEEEEecCC--
Q 028771 23 VSYGGEHHLPLIMNLVDQELS----EPY-----------SIFTYRYFVY-LWPHLSFLAFH--KGKCVGTVVCKMGEH-- 82 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~----~~~-----------~~~~~~~~~~-~~~~~~~v~~~--~g~ivG~~~~~~~~~-- 82 (204)
++.+...|++.+.++....-. -|. +...|..... ....+.||.++ .|++||++.+...-.
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~ 81 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLD 81 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 466778999999999876431 122 2222211111 12335566664 689999998865410
Q ss_pred -------------------------------CCCceEEEEEEEeCcccccCCHHHHHHHHHHHH
Q 028771 83 -------------------------------RSTFRGYIAMLVVIKPYRGRGIATELVTRSIKV 115 (204)
Q Consensus 83 -------------------------------~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~ 115 (204)
.-....+|+.++++|+||+.|.|+.|-+.-.=.
T Consensus 82 ~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLF 145 (335)
T TIGR03243 82 EPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLF 145 (335)
T ss_pred CCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHH
Confidence 012235799999999999999999887654333
No 98
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=96.62 E-value=0.025 Score=45.35 Aligned_cols=92 Identities=17% Similarity=0.048 Sum_probs=59.0
Q ss_pred eecCCCCChHHHHHHHHhhcC----CCchHHHHHHHH-----------h--hCCCeEEEEEE--CCeEEEEEEEEecCC-
Q 028771 23 VSYGGEHHLPLIMNLVDQELS----EPYSIFTYRYFV-----------Y--LWPHLSFLAFH--KGKCVGTVVCKMGEH- 82 (204)
Q Consensus 23 ~~~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~-----------~--~~~~~~~v~~~--~g~ivG~~~~~~~~~- 82 (204)
++.+...|++.+.++....-. -|...+.+...+ . ....+.||.++ .|++||++.+...-.
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 81 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGY 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccC
Confidence 466778999999999886431 122222222211 1 12345666664 689999998865410
Q ss_pred --------------------------------CCCceEEEEEEEeCcccccCCHHHHHHHHHHH
Q 028771 83 --------------------------------RSTFRGYIAMLVVIKPYRGRGIATELVTRSIK 114 (204)
Q Consensus 83 --------------------------------~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~ 114 (204)
.-....+|+.++++|+||+-|.|+.|-+.-.=
T Consensus 82 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfL 145 (336)
T TIGR03245 82 GEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLL 145 (336)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHH
Confidence 01223579999999999999999988665433
No 99
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=96.58 E-value=0.048 Score=36.93 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=52.0
Q ss_pred CeEEEEEE-----CCeEEEEEEEEec-----CCCC-----CceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEE
Q 028771 60 HLSFLAFH-----KGKCVGTVVCKMG-----EHRS-----TFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEV 124 (204)
Q Consensus 60 ~~~~v~~~-----~g~ivG~~~~~~~-----~~~~-----~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i 124 (204)
+..++..+ .|.++|+.-+... .... .+..-|..++|++..|++|+|++|++.+++.- +...-
T Consensus 4 ~~~Yll~d~~~~~~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e---~~~p~ 80 (120)
T PF05301_consen 4 QVLYLLKDSEAGGKGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQEE---NVSPH 80 (120)
T ss_pred eEEEEEEecCCCCCceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHHc---CCCcc
Confidence 34455554 2568888755332 1111 11223566899999999999999999997654 44545
Q ss_pred EEEEecCCHHHHHHHHH-CCC
Q 028771 125 TLEAEVTNKGALALYGR-LGF 144 (204)
Q Consensus 125 ~l~~~~~N~~a~~~y~k-~GF 144 (204)
.+.++......++|.+| .|-
T Consensus 81 ~~a~DrPS~Kll~Fl~Khy~L 101 (120)
T PF05301_consen 81 QLAIDRPSPKLLSFLKKHYGL 101 (120)
T ss_pred cceecCCcHHHHHHHHHhcCC
Confidence 55555555567887765 444
No 100
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.58 E-value=0.012 Score=51.19 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=60.5
Q ss_pred eEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCC--c-----------EEE----------------------------
Q 028771 87 RGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGC--E-----------EVT---------------------------- 125 (204)
Q Consensus 87 ~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~--~-----------~i~---------------------------- 125 (204)
.+.|-.|+|+|+|++.|+|++.++.+.++...... . .+.
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er 693 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSER 693 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccC
Confidence 35688999999999999999999999988764311 1 000
Q ss_pred -------EEEe-cCCHHHHHHHHHCCCEEeeEEeeccc-CCcceeeEeccCCCC
Q 028771 126 -------LEAE-VTNKGALALYGRLGFIRAKRLFRYYL-NGVDAFRLKLLFPCP 170 (204)
Q Consensus 126 -------l~~~-~~N~~a~~~y~k~GF~~~~~~~~~~~-~~~~~~~m~~~l~~~ 170 (204)
+.|. ---....+||+++||.++........ .|+..++|-+.+..+
T Consensus 694 ~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~lTGEHtcimLk~L~~~ 747 (1011)
T KOG2036|consen 694 PPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSNDLTGEHTCIMLKTLEGD 747 (1011)
T ss_pred CCcccceeeecccCCHHHHHHHHhcCceeEEeeccccccccceeEEEEecCCCc
Confidence 0000 00134689999999999887665543 889999999998743
No 101
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.49 E-value=0.014 Score=48.83 Aligned_cols=121 Identities=18% Similarity=0.172 Sum_probs=88.7
Q ss_pred ecCCCCChHHHHHHHHhhcC-----CCchHHHHHHHHhhCCCeEEEEE-----ECCeEEEEEEEEecCCCCCceEEEEEE
Q 028771 24 SYGGEHHLPLIMNLVDQELS-----EPYSIFTYRYFVYLWPHLSFLAF-----HKGKCVGTVVCKMGEHRSTFRGYIAML 93 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~-----~~g~ivG~~~~~~~~~~~~~~~~i~~l 93 (204)
+.....+++.+.+|.+..-+ .-+..+...++..+.....|-+. -|.-+||++.+.... ..+.|..+
T Consensus 417 s~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk~----~~w~IDt~ 492 (574)
T COG3882 417 SKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKKE----SEWFIDTF 492 (574)
T ss_pred eeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEecC----CeEEhHHH
Confidence 34458889999999886543 23455556664444443444333 246689998775433 35788877
Q ss_pred EeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEE--ecCCHHHHHHHHHCCCEEee
Q 028771 94 VVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEA--EVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 94 ~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~--~~~N~~a~~~y~k~GF~~~~ 148 (204)
...=..=|+++-.+||..+++.|...|+..+...- ...|.+...||+++||+..+
T Consensus 493 lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 493 LMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 77777779999999999999999999999888753 56788999999999999555
No 102
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=95.98 E-value=0.056 Score=43.39 Aligned_cols=75 Identities=15% Similarity=0.035 Sum_probs=56.0
Q ss_pred CchHHHHHHHHhhCC---CeEEEEE--ECCeEEEEEEEEec----CCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHH
Q 028771 45 PYSIFTYRYFVYLWP---HLSFLAF--HKGKCVGTVVCKMG----EHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKV 115 (204)
Q Consensus 45 ~~~~~~~~~~~~~~~---~~~~v~~--~~g~ivG~~~~~~~----~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~ 115 (204)
.|+.+++.+.+...+ ..+..+- .++++|||+...+. .+...++++|-.++|+.+.|+|+++-.|++++...
T Consensus 116 ~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRR 195 (421)
T KOG2779|consen 116 DYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRR 195 (421)
T ss_pred hccHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHH
Confidence 466677776666532 3344443 46799999988765 23345688999999999999999999999999888
Q ss_pred HHHc
Q 028771 116 MMES 119 (204)
Q Consensus 116 ~~~~ 119 (204)
+.-.
T Consensus 196 vnl~ 199 (421)
T KOG2779|consen 196 VNLE 199 (421)
T ss_pred hhhh
Confidence 7543
No 103
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.93 E-value=0.061 Score=39.55 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=35.8
Q ss_pred eEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcC
Q 028771 70 KCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESG 120 (204)
Q Consensus 70 ~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g 120 (204)
.+|||..=-.. ......+..|.|.|.||++|+|+.|++..-+.++..+
T Consensus 66 h~vGyFSKEk~---s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKE---SWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS----TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEec---ccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 58888654322 2224578899999999999999999999998888764
No 104
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=95.79 E-value=0.019 Score=45.93 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=40.5
Q ss_pred cccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEee
Q 028771 97 KPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 97 p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
..||.||+|+.||++++..|++. |-.+|.+.... +...+|+|+||+..+
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGV---GtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGV---GTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEecc---chHHHHHhhCeeecC
Confidence 46999999999999999999875 77776654443 478899999999866
No 105
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=95.66 E-value=0.049 Score=39.26 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=90.1
Q ss_pred CCCChHHHHHHHHhhcCCC--chHHHHHH---HHhhCCCeEEEEEECCeEEEEEEEEec----CCCCCceEEEEEEEeCc
Q 028771 27 GEHHLPLIMNLVDQELSEP--YSIFTYRY---FVYLWPHLSFLAFHKGKCVGTVVCKMG----EHRSTFRGYIAMLVVIK 97 (204)
Q Consensus 27 ~~~d~~~i~~l~~~~~~~~--~~~~~~~~---~~~~~~~~~~v~~~~g~ivG~~~~~~~----~~~~~~~~~i~~l~V~p 97 (204)
..+|-.++.+++...+... +..+.|.- +--..+..-.++++..-+++-+++... .....-.++++..+|.|
T Consensus 16 ~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgyD~~GvaAH~G~LRRFIkVG~vDlLVaElGLygVRp 95 (196)
T PF02474_consen 16 QLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGYDSRGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRP 95 (196)
T ss_pred chhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEeecCchHHHHHHHHHHHhccCCcceeEEEEEEEEeec
Confidence 4566677888877766531 21111111 111134556677776655555443222 12234478999999999
Q ss_pred ccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCC---C-------EEeeEEeecccCC-----cceee
Q 028771 98 PYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLG---F-------IRAKRLFRYYLNG-----VDAFR 162 (204)
Q Consensus 98 ~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~G---F-------~~~~~~~~~~~~~-----~~~~~ 162 (204)
+.+|.||+..+ ..+...+.+.|+.....+|.. +..+.+++++ . ....+..+.+.+- +|.+.
T Consensus 96 DLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~---al~~Hv~R~~R~gl~ti~~gvrVRSTlpdv~~dlppTr~ed~lv 171 (196)
T PF02474_consen 96 DLEGLGISHSM-RVMYPVLQELGVPFGFGTVRH---ALRNHVERLCRNGLATILSGVRVRSTLPDVYLDLPPTRIEDVLV 171 (196)
T ss_pred cccccccchhh-hhhhhHHHhcCCCeecccchH---HHHHHHHHHhccchhhcccCceeeccCccccCCCCCcccccceE
Confidence 99999999976 688888888899988888876 5777888765 2 2223344444322 37777
Q ss_pred EeccCCCCCCCCCc
Q 028771 163 LKLLFPCPEIHPSL 176 (204)
Q Consensus 163 m~~~l~~~~~~~~~ 176 (204)
+...+..+...=|.
T Consensus 172 ~V~Pi~r~~seWP~ 185 (196)
T PF02474_consen 172 VVLPIGRSMSEWPA 185 (196)
T ss_pred EEEcCCCccccCCC
Confidence 77776655444433
No 106
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=95.65 E-value=0.46 Score=33.23 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=69.7
Q ss_pred eEEeecCCCCChHHHHHHHHhhcCC-----------------CchHHHHHHHHhhCCCeEEEEE-ECCeEEEEEEEEecC
Q 028771 20 IEYVSYGGEHHLPLIMNLVDQELSE-----------------PYSIFTYRYFVYLWPHLSFLAF-HKGKCVGTVVCKMGE 81 (204)
Q Consensus 20 ~~~~~~~~~~d~~~i~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~v~~-~~g~ivG~~~~~~~~ 81 (204)
++++.|. +.|++.+..+....... .-|...+..+ ......|++. .+|++.||+.....-
T Consensus 1 M~yR~f~-e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy--~RsgHSFvA~~e~~~~~GfvLAQaVW 77 (161)
T PF09390_consen 1 MRYRPFT-EPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFY--ERSGHSFVAEDEGGELQGFVLAQAVW 77 (161)
T ss_dssp -EEE----GGGHHHHHHC--------------------STTS---HHHHHHH--HCCS--EEEE-ETTEEEEEEEEEEEE
T ss_pred CcccccC-cccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhh--hccCCcEEEEccCCceeeeeehhHHh
Confidence 3566666 88888888874433210 1122222222 2346788888 889999999776655
Q ss_pred CCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 82 HRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 82 ~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
....+...+..|.+.|. +......-||.++.+-+...++..+.+...+ ....-.+.-||...+.
T Consensus 78 QGdrptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~~A~~a~~~~~~~~ 141 (161)
T PF09390_consen 78 QGDRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELEAAARAEGFRLGGQ 141 (161)
T ss_dssp -SSSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHHHHHHHTT----S-
T ss_pred cCCCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHHHHHhhcccccCCe
Confidence 55666777777666554 4557788899999999999999999998887 4666677888886653
No 107
>PHA01733 hypothetical protein
Probab=95.64 E-value=0.051 Score=38.46 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=56.3
Q ss_pred CCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHH
Q 028771 59 PHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMME-SGCEEVTLEAEVTNKGALA 137 (204)
Q Consensus 59 ~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~-~g~~~i~l~~~~~N~~a~~ 137 (204)
....+.+..+|.++|..+..+... ...+.++.++...=.| +-+.++.++..+..+ ..+..+.=.|...|..+++
T Consensus 46 ~~~v~~~~~nG~l~aI~Gv~~d~~--~~vG~pWlV~T~~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir 120 (153)
T PHA01733 46 ENVVAFVAPDGSLAGVAGLVEDMG--NRVGEIWMVCTPAIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRK 120 (153)
T ss_pred ccceEEEecCCcEEEEeccccccc--CCCCceeEEecHHhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHH
Confidence 344466777899999998876321 1234455444443333 334455555555443 3566676689999999999
Q ss_pred HHHHCCCEEeeE
Q 028771 138 LYGRLGFIRAKR 149 (204)
Q Consensus 138 ~y~k~GF~~~~~ 149 (204)
|.+.+||+....
T Consensus 121 ~Lk~lGF~f~~~ 132 (153)
T PHA01733 121 LLRKLGFKGLRY 132 (153)
T ss_pred HHHHcCceeecc
Confidence 999999998664
No 108
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=95.26 E-value=0.13 Score=41.82 Aligned_cols=112 Identities=13% Similarity=0.243 Sum_probs=76.4
Q ss_pred CCChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCccccc-CCHHH
Q 028771 28 EHHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRG-RGIAT 106 (204)
Q Consensus 28 ~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg-~Gig~ 106 (204)
.=|++.+..++++.|........|...+...-...+|+ |.-.|.+.+...........|++.++|.+..|| -||+.
T Consensus 344 ~Ldl~r~q~LI~~SFkRTLd~h~y~~r~~~~La~~iVs---gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd 420 (495)
T COG5630 344 DLDLPRLQHLIQSSFKRTLDPHYYETRINTPLARAIVS---GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISD 420 (495)
T ss_pred hcCcHHHHHHHHHHHhhccCHHHHHHhccCcceeEEee---ccceeeEEEEeeccCCCCCcceeeeeccccccccchHHH
Confidence 34678899999999987777777777766644444444 334555555555444456789999999999999 99999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH--HHCCCEEe
Q 028771 107 ELVTRSIKVMMESGCEEVTLEAEVTNKGALALY--GRLGFIRA 147 (204)
Q Consensus 107 ~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y--~k~GF~~~ 147 (204)
.++.-|.+..-. .+.+-....| .+.+|| ++.|+-..
T Consensus 421 ~vfniM~e~fP~----eL~WRSR~~N-~vNkwYf~rSvg~lk~ 458 (495)
T COG5630 421 AVFNIMREEFPN----ELFWRSRHNN-QVNKWYFARSVGYLKQ 458 (495)
T ss_pred HHHHHHHHhCcH----hhhhhhcccC-cchheeeehhhehhhc
Confidence 999888776542 2333334444 466666 55666544
No 109
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=95.09 E-value=0.7 Score=31.86 Aligned_cols=99 Identities=15% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHH
Q 028771 59 PHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALA 137 (204)
Q Consensus 59 ~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~ 137 (204)
...++-++..++++|++.+...... ..+... .-+|++|| ++...-....+|..+. .+..+...+...-.-.+-
T Consensus 37 ~~~Y~gVyeg~~l~Gi~~v~~i~~~---~vecHa-~y~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grv 110 (151)
T PF11039_consen 37 DQLYLGVYEGGQLGGIVYVEEIQPS---VVECHA-MYDPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRV 110 (151)
T ss_pred ccEEEEEEeceEEEEEEEEEEEeee---eEEEEe-eeccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchh
Confidence 3456777788999999988665433 455554 45899999 8888888889998876 444443333322233444
Q ss_pred HHHHCCCEEeeEEeecccCCcceeeE
Q 028771 138 LYGRLGFIRAKRLFRYYLNGVDAFRL 163 (204)
Q Consensus 138 ~y~k~GF~~~~~~~~~~~~~~~~~~m 163 (204)
.-+-+|.+.++.+.+++....+..++
T Consensus 111 ic~llg~~RVG~id~~~~g~~~vTlY 136 (151)
T PF11039_consen 111 ICRLLGARRVGHIDDYFKGVDGVTLY 136 (151)
T ss_pred HhhhhCCceeeeHHHHhcCCCceEEE
Confidence 55779999999998877533344443
No 110
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=95.02 E-value=0.089 Score=34.76 Aligned_cols=50 Identities=26% Similarity=0.211 Sum_probs=37.3
Q ss_pred CeEEEEEECCe-EEEEEEEEecCC--------------------CCCceEEEEEEEeCcccccCCHHHHHH
Q 028771 60 HLSFLAFHKGK-CVGTVVCKMGEH--------------------RSTFRGYIAMLVVIKPYRGRGIATELV 109 (204)
Q Consensus 60 ~~~~v~~~~g~-ivG~~~~~~~~~--------------------~~~~~~~i~~l~V~p~~Rg~Gig~~ll 109 (204)
...+++.+++. +||++.+..... .....++|+.++|+|+||+......|.
T Consensus 30 ~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 30 SVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred ccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 34666666555 999998866522 124678999999999999998877764
No 111
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=94.60 E-value=0.13 Score=40.25 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=37.0
Q ss_pred CeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcC
Q 028771 69 GKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESG 120 (204)
Q Consensus 69 g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g 120 (204)
-.+|||..=-.... ....+..|.|.|.||++|+|+.|++..-+.++..|
T Consensus 140 ~h~vGYFSKEK~s~---~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 140 SHIVGYFSKEKVSA---EDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEeceecccc---CCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 46888864432221 13458889999999999999999999988887654
No 112
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.48 Score=35.89 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=38.7
Q ss_pred EEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHH-HCCCEE
Q 028771 88 GYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYG-RLGFIR 146 (204)
Q Consensus 88 ~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~-k~GF~~ 146 (204)
.-|..++|++..|+.|.|++|+++|++.- +...=.+.++.-....++|.+ +.|-+.
T Consensus 109 lcILDFyVheS~QR~G~G~~lfdyMl~kE---~vephQ~a~DrPS~kLl~Fm~khYgl~~ 165 (264)
T KOG4601|consen 109 LCILDFYVHESEQRSGNGFKLFDYMLKKE---NVEPHQCAFDRPSAKLLQFMEKHYGLKD 165 (264)
T ss_pred ceEEEEEeehhhhhcCchHHHHHHHHHhc---CCCchheeccChHHHHHHHHHHhcCccc
Confidence 34677999999999999999999997653 333333444433345677775 466653
No 113
>PHA00432 internal virion protein A
Probab=94.44 E-value=0.43 Score=33.29 Aligned_cols=84 Identities=10% Similarity=0.023 Sum_probs=50.7
Q ss_pred CeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcc-cccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHH
Q 028771 60 HLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKP-YRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALAL 138 (204)
Q Consensus 60 ~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~-~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~ 138 (204)
..++....+|.++|.++ +...+.+.|+.=.|..- -..+-=.++++....+.+.+ .+..+.=.|...|..+++|
T Consensus 37 ~~~~~~~~~G~~~aI~G-----n~G~~vW~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~-~yp~LwNyV~~~N~~hir~ 110 (137)
T PHA00432 37 SECVTLSLDGFVLAIGG-----NQGDQVWFVTSDQVWRLTKKEKREFRKLIMEYRDMMLD-QYPSLWNYVWVGNKSHIRF 110 (137)
T ss_pred ceEEEEecCCeEEEEec-----CCCCceEEEecHHhhhCChhhhHHHHHHHHHHHHHHHH-hhhhhheeeecCCHHHHHH
Confidence 45788889999998883 22222333333233220 00111122233333333333 3677777899999999999
Q ss_pred HHHCCCEEeeE
Q 028771 139 YGRLGFIRAKR 149 (204)
Q Consensus 139 y~k~GF~~~~~ 149 (204)
.+.+||+....
T Consensus 111 Lk~lGf~f~~e 121 (137)
T PHA00432 111 LKSIGAVFHNE 121 (137)
T ss_pred HHHcCeeeecc
Confidence 99999998775
No 114
>PLN03239 histone acetyltransferase; Provisional
Probab=94.09 E-value=0.18 Score=40.65 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=36.5
Q ss_pred CeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcC
Q 028771 69 GKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESG 120 (204)
Q Consensus 69 g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g 120 (204)
-.+|||..=-... .....+..|.|.|.||++|+|+.|++..-+.++..|
T Consensus 198 ~h~vGYFSKEK~s---~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 198 FHPVGYYSKEKYS---DVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred eEEEEEeeecccC---CCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 3678885432221 112458899999999999999999999988887654
No 115
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=94.05 E-value=0.39 Score=37.62 Aligned_cols=88 Identities=18% Similarity=0.080 Sum_probs=55.3
Q ss_pred EeecCCCCChHHHHHHHHhhcC----CCchHHHHHHHH-----------hh-CCCeEEEEEE--CCeEEEEEEEEec---
Q 028771 22 YVSYGGEHHLPLIMNLVDQELS----EPYSIFTYRYFV-----------YL-WPHLSFLAFH--KGKCVGTVVCKMG--- 80 (204)
Q Consensus 22 ~~~~~~~~d~~~i~~l~~~~~~----~~~~~~~~~~~~-----------~~-~~~~~~v~~~--~g~ivG~~~~~~~--- 80 (204)
..++....|++.+.++....-. -|-..+.+...+ .. .....||.++ .|+++|+..+.-.
T Consensus 3 vvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~vGl 82 (336)
T COG3138 3 VVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAVGL 82 (336)
T ss_pred ccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEeecc
Confidence 3567779999999999876432 122223332222 11 2335666666 6999999877543
Q ss_pred ------------------------------CCCCCceEEEEEEEeCcccccCCHHHHHH
Q 028771 81 ------------------------------EHRSTFRGYIAMLVVIKPYRGRGIATELV 109 (204)
Q Consensus 81 ------------------------------~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll 109 (204)
.+.-....+|..++++|++|.-|.|+.|-
T Consensus 83 ~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Lls 141 (336)
T COG3138 83 NDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLS 141 (336)
T ss_pred CCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhh
Confidence 00012234688999999999998887654
No 116
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=93.84 E-value=1 Score=35.77 Aligned_cols=108 Identities=16% Similarity=-0.027 Sum_probs=61.5
Q ss_pred eEEeecC--CCCChHHHHHHHHhhcCCC--chHHHHHHHHh---hCCCeEEEEEE-CCeEEEEEEEEecCCCCCceEEEE
Q 028771 20 IEYVSYG--GEHHLPLIMNLVDQELSEP--YSIFTYRYFVY---LWPHLSFLAFH-KGKCVGTVVCKMGEHRSTFRGYIA 91 (204)
Q Consensus 20 ~~~~~~~--~~~d~~~i~~l~~~~~~~~--~~~~~~~~~~~---~~~~~~~v~~~-~g~ivG~~~~~~~~~~~~~~~~i~ 91 (204)
+.+.... ++++.+++.++..++.... .........+. ......+++.. +|+++|++.+.+... ...+.+.
T Consensus 133 ~~~~~~~~~~~~~~~el~~i~~~W~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~--~~~~~~~ 210 (299)
T PF09924_consen 133 FEVVPIPELDPELRDELLEISDEWLKEKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGG--RDGWSID 210 (299)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHHHCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE---TTEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhcCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccC--CccEEEE
Confidence 4554442 4677888888877655432 11222222221 23567888888 999999999988763 2244444
Q ss_pred EEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEec
Q 028771 92 MLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEV 130 (204)
Q Consensus 92 ~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 130 (204)
..--+++ -=+|+-..|+..+++.+.+.|++.+.|...+
T Consensus 211 ~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ap 248 (299)
T PF09924_consen 211 FEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGFAP 248 (299)
T ss_dssp EEEE-TT--STTHHHHHHHHHHHHS--TT--EEE-----
T ss_pred EEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccccc
Confidence 3344444 4579999999999999998899988865554
No 117
>PRK00756 acyltransferase NodA; Provisional
Probab=93.75 E-value=0.64 Score=33.44 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=69.8
Q ss_pred CCCCChHHHHHHHHhhcCCC--chHHHHHH---HHhhCCCeEEEEEECCeEEEEEEEEec----CCCCCceEEEEEEEeC
Q 028771 26 GGEHHLPLIMNLVDQELSEP--YSIFTYRY---FVYLWPHLSFLAFHKGKCVGTVVCKMG----EHRSTFRGYIAMLVVI 96 (204)
Q Consensus 26 ~~~~d~~~i~~l~~~~~~~~--~~~~~~~~---~~~~~~~~~~v~~~~g~ivG~~~~~~~----~~~~~~~~~i~~l~V~ 96 (204)
....|-.++.+++...+... +..+-|.- +--..+..-.++++..-+++-+++... ..-..-.++++..+|.
T Consensus 15 L~ladH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPElRaIgyD~~GVaAH~G~LRRFIkVg~vDlLVaElGLygVR 94 (196)
T PRK00756 15 LELSDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIAYDSHGVAAHMGLLRRFIKVGEVDLLVAELGLYGVR 94 (196)
T ss_pred cccchhHHHHHHHHHhcCCcccccccccCcCcccccCCceeEEEeecCccHhHhHHHHhhhheecccceeEEEeeeeeec
Confidence 34566677888877766421 11111110 111124456666666555554443222 1223457899999999
Q ss_pred cccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHC
Q 028771 97 KPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRL 142 (204)
Q Consensus 97 p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~ 142 (204)
|+..|.||+..+ ..+.-.+.+.|+....-+|.+ +..+-.+++
T Consensus 95 pDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~---al~~Hv~R~ 136 (196)
T PRK00756 95 PDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRH---ALRNHVERL 136 (196)
T ss_pred cccccccchhhH-HHHHHHHHhcCCCeecccchH---HHHHHHHHH
Confidence 999999999876 688888888898877777765 455555554
No 118
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=93.63 E-value=0.96 Score=36.00 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=68.2
Q ss_pred EeecCCCCChHHHHHHHHhhcCC--------CchHHHHHHHHhhCCC---eEEEEEECC--eEEEEEEEEec----CCCC
Q 028771 22 YVSYGGEHHLPLIMNLVDQELSE--------PYSIFTYRYFVYLWPH---LSFLAFHKG--KCVGTVVCKMG----EHRS 84 (204)
Q Consensus 22 ~~~~~~~~d~~~i~~l~~~~~~~--------~~~~~~~~~~~~~~~~---~~~v~~~~g--~ivG~~~~~~~----~~~~ 84 (204)
.+..++...+..+..+..+.+.. .|+.+++++.+...+. .++++-..+ ++|||+...+. .+..
T Consensus 83 ~idv~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~ 162 (451)
T COG5092 83 VIDVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKR 162 (451)
T ss_pred eEeccccchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccc
Confidence 34455666777777777765532 3556666666655332 344444444 89999977654 2223
Q ss_pred CceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc
Q 028771 85 TFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES 119 (204)
Q Consensus 85 ~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~ 119 (204)
...++|-.++|+.+.|++.+.-.|+.++...+.-.
T Consensus 163 ~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~ 197 (451)
T COG5092 163 SSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVD 197 (451)
T ss_pred cccceEEEEEEehhhhhCccchHHHHHHHHhhhhh
Confidence 44788999999999999999999999998887543
No 119
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=93.55 E-value=1.8 Score=34.41 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=69.8
Q ss_pred CCeEEEEEECCeEEEEEEEEecCCC---CCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc---------C-CcEEE
Q 028771 59 PHLSFLAFHKGKCVGTVVCKMGEHR---STFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMES---------G-CEEVT 125 (204)
Q Consensus 59 ~~~~~v~~~~g~ivG~~~~~~~~~~---~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~---------g-~~~i~ 125 (204)
...+.++..-+.+|+.+.+.+..+. ......|..+.|+.=|..-|+-..|+++++-++++. | --.+.
T Consensus 168 ~~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll 247 (304)
T PF11124_consen 168 GKNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLL 247 (304)
T ss_pred CCcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEE
Confidence 3456677778899999999888654 345667899999999999999999999997776652 1 11233
Q ss_pred EEEecCCHHHHHHHHHCCCEEee
Q 028771 126 LEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 126 l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
.++-.-+....+..++.||+...
T Consensus 248 ~d~YSFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 248 VDVYSFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred EEeeeccHHHHHHHHHCCCeeee
Confidence 45556677899999999999987
No 120
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.25 E-value=0.22 Score=41.95 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=36.8
Q ss_pred CeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcC
Q 028771 69 GKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESG 120 (204)
Q Consensus 69 g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g 120 (204)
-.+|||..=-... .....|..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 369 ~HiVGYFSKEK~S---~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 369 CHIVGYFSKEKVS---LLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred cEEEEEecccccC---cccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 3788885432221 123468899999999999999999999988887654
No 121
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=92.87 E-value=0.18 Score=41.32 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=28.3
Q ss_pred eEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc
Q 028771 87 RGYIAMLVVIKPYRGRGIATELVTRSIKVMMES 119 (204)
Q Consensus 87 ~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~ 119 (204)
...+..|-|.|.||++|+|+.|++..-+..+..
T Consensus 260 ~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E 292 (396)
T KOG2747|consen 260 NYNLACILTLPPYQRKGYGKLLIDFSYELSRRE 292 (396)
T ss_pred ccceeeeeecChhhhcccchhhhhhhhhhhccc
Confidence 456888999999999999999999887777543
No 122
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=92.83 E-value=1.2 Score=29.91 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=45.3
Q ss_pred EEECCeEEEEEEEEecCCC---CCceEEEEEEEeCccccc-CCHHHHHHHHHHHHHHHcCCcE-EEEEEecCCHHHHHHH
Q 028771 65 AFHKGKCVGTVVCKMGEHR---STFRGYIAMLVVIKPYRG-RGIATELVTRSIKVMMESGCEE-VTLEAEVTNKGALALY 139 (204)
Q Consensus 65 ~~~~g~ivG~~~~~~~~~~---~~~~~~i~~l~V~p~~Rg-~Gig~~ll~~~~~~~~~~g~~~-i~l~~~~~N~~a~~~y 139 (204)
++.+|..=|.+.+...... .....+|..++|.+..|| .|++..+...|.+ .... +...+..+|+ ..++|
T Consensus 14 ~y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrsr~~n~-~n~Wy 87 (108)
T cd04266 14 VIIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRSRKDNP-VNKWY 87 (108)
T ss_pred EEEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEeCCCCc-ccceE
Confidence 3334444444444433211 245789999999999997 8999999998876 2343 6667776664 44555
No 123
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=92.72 E-value=3.2 Score=33.73 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=78.4
Q ss_pred ecCCCCChHHHHHHHHhhcC-----CCchHHHHHHHHhhCC--CeEEEEEE-CCeEEEEEEEEecCCC-----CC---ce
Q 028771 24 SYGGEHHLPLIMNLVDQELS-----EPYSIFTYRYFVYLWP--HLSFLAFH-KGKCVGTVVCKMGEHR-----ST---FR 87 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~-----~~~~~~~~~~~~~~~~--~~~~v~~~-~g~ivG~~~~~~~~~~-----~~---~~ 87 (204)
+.+...|++.+.+|+..... ..++.+.+..++.... -.+||++. +|+|-+|+.++..+.. .. ..
T Consensus 264 R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl~a 343 (421)
T KOG2779|consen 264 REMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTLQA 343 (421)
T ss_pred ccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcceeee
Confidence 44558999999999987653 3455666665554433 35788885 8999999988776431 11 12
Q ss_pred EEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecc
Q 028771 88 GYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYY 154 (204)
Q Consensus 88 ~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~ 154 (204)
+|+. ..|..+ -=-.+|+..++-.++..|++.......-+|. .|+++++|-.-.....||
T Consensus 344 aYly-Y~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~---~fl~~LkFg~GdG~l~YY 402 (421)
T KOG2779|consen 344 AYLY-YNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENE---SFLKDLKFGPGDGNLQYY 402 (421)
T ss_pred eeEE-EeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhh---hHHHhcCcCcCCCceeEE
Confidence 3332 223222 1134566666667778898877776666665 599999998755444443
No 124
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.41 E-value=0.067 Score=44.39 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=43.7
Q ss_pred eEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEE-----EecCCHHHHHHHHHCCCEEee
Q 028771 87 RGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLE-----AEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 87 ~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~-----~~~~N~~a~~~y~k~GF~~~~ 148 (204)
.+.|..+.|+|+||+-|+|..-+..+.+|..++-.....-. +...-.+=..|+++.||+..-
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 35699999999999999999999999999988743322211 111111123589999998743
No 125
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=92.10 E-value=0.23 Score=41.53 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=36.3
Q ss_pred CeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcC
Q 028771 69 GKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESG 120 (204)
Q Consensus 69 g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g 120 (204)
-.+|||..=-... .....|..|.|.|.||++|+|+.|++..-+..+..|
T Consensus 291 ~h~vGyFSKEk~s---~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 291 CHMVGYFSKEKHS---EEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred cEEEEEecccccC---cCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 3789986432221 112458899999999999999999999888876553
No 126
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=91.12 E-value=1.7 Score=31.92 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=60.4
Q ss_pred EECCeEEEEEEEEecCCC-------------------------CCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcC
Q 028771 66 FHKGKCVGTVVCKMGEHR-------------------------STFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESG 120 (204)
Q Consensus 66 ~~~g~ivG~~~~~~~~~~-------------------------~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g 120 (204)
..+|++++.++++..... .....+|+.++.. +.|.++.|+..+...+...|
T Consensus 41 ~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g 116 (179)
T PF12261_consen 41 DSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQG 116 (179)
T ss_pred cCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHHHHCC
Confidence 368899999998876321 1345788887766 47999999999999999999
Q ss_pred CcEEEEEEecCCHHHHHHHHHCCCEEee
Q 028771 121 CEEVTLEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
++.+..+... .-.+++.++|.....
T Consensus 117 ~~w~vfTaT~---~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 117 FEWVVFTATR---QLRNLFRRLGLPPTV 141 (179)
T ss_pred CCEEEEeCCH---HHHHHHHHcCCCcee
Confidence 9988776655 589999999998643
No 127
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=91.04 E-value=2.8 Score=26.76 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=45.8
Q ss_pred EEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccc-----cCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHH
Q 028771 62 SFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYR-----GRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGAL 136 (204)
Q Consensus 62 ~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~R-----g~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~ 136 (204)
+.+....|.+++.++.. . ..++.+..+.-++ +.-+.+.+..++ +.+.+. +..+.=.|...|...+
T Consensus 2 ~v~~~~~g~~lAiGG~~--g------~~~Wfvtt~~v~~~~~~~~~eF~k~i~~~~-d~~l~~-Y~~l~N~V~~~N~~HI 71 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNN--G------GCLWFVTTNKVKSLTKKERREFRKLIKEYL-DKMLKQ-YPVLWNFVWVGNKSHI 71 (86)
T ss_pred eEEEecCCeEEEEcccc--C------CeEEEEECcHHhhcCHhhhHHHHHHHHHHH-HHHHHH-hhheeEEEEeCCHHHH
Confidence 34556788888887663 1 1133334444331 122333333333 333332 5667778999999999
Q ss_pred HHHHHCCCEEee
Q 028771 137 ALYGRLGFIRAK 148 (204)
Q Consensus 137 ~~y~k~GF~~~~ 148 (204)
+|.+++|++...
T Consensus 72 RfLk~lGA~f~~ 83 (86)
T PF11090_consen 72 RFLKSLGAVFHN 83 (86)
T ss_pred HHHHhcCcEEcc
Confidence 999999998643
No 128
>PRK04531 acetylglutamate kinase; Provisional
Probab=90.92 E-value=1.8 Score=36.14 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=64.7
Q ss_pred CChHHHHHHHHhhcCCCchHHHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHH
Q 028771 29 HHLPLIMNLVDQELSEPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATEL 108 (204)
Q Consensus 29 ~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~l 108 (204)
-|.+.+.+++...+....... ++.. ...+-++.++..=|.+.+... ....++..++|.+..||.|++..+
T Consensus 262 ~d~~~l~~ll~~sf~r~~~~~----y~~~--~~~~~~y~~~~y~~~Aiv~~~----~~~~~Ldkf~v~~~~~~~~v~d~v 331 (398)
T PRK04531 262 LDLERLNLLIESSFGRTLKPD----YFDT--TQLLRAYVSENYRAAAILTET----GGGPYLDKFAVLDDARGEGLGRAV 331 (398)
T ss_pred cCHHHHHHHHhhhcccchHHH----Hhcc--CCceEEEEeCCCcEEEEEecC----CCceEeEEEEEccchhhcChHHHH
Confidence 377788888876665433322 2222 233444444444444444332 236889999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCHHHHHHH--HHCCCEEe
Q 028771 109 VTRSIKVMMESGCEEVTLEAEVTNKGALALY--GRLGFIRA 147 (204)
Q Consensus 109 l~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y--~k~GF~~~ 147 (204)
...+.+.. ..+.+.+.++|+ -.+|| ++-|+-..
T Consensus 332 f~~~~~~~-----~~L~Wrsr~~n~-~~~Wyf~~s~G~~~~ 366 (398)
T PRK04531 332 WNVMREET-----PQLFWRSRHNNT-INKFYYAESDGCIKQ 366 (398)
T ss_pred HHHHHhhC-----CceEEEcCCCCC-ccceeeecccceEec
Confidence 99887654 456777777664 44555 44565553
No 129
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=6.9 Score=30.18 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=59.5
Q ss_pred chHHHHHHHHhh-CCCeEEEEEE-------CCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHH
Q 028771 46 YSIFTYRYFVYL-WPHLSFLAFH-------KGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMM 117 (204)
Q Consensus 46 ~~~~~~~~~~~~-~~~~~~v~~~-------~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~ 117 (204)
.+...|..++.. .....++-+. .|++|+++......++-. .-..+-+|++....+|+..+-.-+.+|+
T Consensus 129 ~s~~~f~~f~~d~~~~~~~~e~r~~~~~~~~G~LvAVavtDvL~dGlS----sVY~FydPd~s~~SLGt~~iL~~I~~aq 204 (253)
T COG2935 129 MSFKDFAAFLEDTHVNTQLIEYRRRKPGKGEGKLVAVAVTDVLPDGLS----SVYTFYDPDMSKRSLGTLSILDQIAIAQ 204 (253)
T ss_pred ccHHHHHHHHhccccceeeEEEEecCCCCCCCcEEEEEeeecccCcce----eEEEEeCCChhhhcchHHHHHHHHHHHH
Confidence 345555555444 2333344432 799999999888776621 2224579999999999999999999999
Q ss_pred HcCCcEEEEEEecCC
Q 028771 118 ESGCEEVTLEAEVTN 132 (204)
Q Consensus 118 ~~g~~~i~l~~~~~N 132 (204)
+.|...++|.=..++
T Consensus 205 ~~~l~yvYLGYwI~~ 219 (253)
T COG2935 205 RLGLPYVYLGYWIKG 219 (253)
T ss_pred HhCCCeEEEEEEECC
Confidence 999999999655543
No 130
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=89.46 E-value=7.1 Score=29.00 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=80.5
Q ss_pred ecCCCCChHHHHHHHHhhcCC-----CchHHHHHHHHhhCC--CeEEEEEECC-eEEEEEEEEecCC-----CC---Cce
Q 028771 24 SYGGEHHLPLIMNLVDQELSE-----PYSIFTYRYFVYLWP--HLSFLAFHKG-KCVGTVVCKMGEH-----RS---TFR 87 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~-----~~~~~~~~~~~~~~~--~~~~v~~~~g-~ivG~~~~~~~~~-----~~---~~~ 87 (204)
+..+..|++++..+++..+.. .++.+.+..++.... ..++|+++++ +|-.++.++..+. +. -..
T Consensus 32 R~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~a 111 (190)
T PF02799_consen 32 RPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLKA 111 (190)
T ss_dssp EE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEEE
T ss_pred ccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCccceee
Confidence 445589999999999987753 357777777776543 3578888655 8988888876532 11 223
Q ss_pred EEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecc
Q 028771 88 GYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYY 154 (204)
Q Consensus 88 ~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~ 154 (204)
+|+. ..+... ==-++|+..++-.|++.|++.+.....-+|. .|.+.+.|..-.-...||
T Consensus 112 AY~f-Y~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~YY 170 (190)
T PF02799_consen 112 AYSF-YYVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNS---SFLEDLKFGPGDGNLNYY 170 (190)
T ss_dssp EEEE-EEEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGG---GTTTTTT-EEEEEEEEEE
T ss_pred eeee-eeeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccch---hhHhhCCccCCCCCeEEE
Confidence 4443 233332 2245678888888888999988877777775 589999999765555554
No 131
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=89.23 E-value=1.4 Score=35.90 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=39.4
Q ss_pred eEEEEEEEEecCCC-CCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEe
Q 028771 70 KCVGTVVCKMGEHR-STFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAE 129 (204)
Q Consensus 70 ~ivG~~~~~~~~~~-~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~ 129 (204)
.++|+..+.-.... ......|..+.+.|.||++|+|..|++.+....... -..+.+++.
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~-p~v~DiTVE 258 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEE-PTVLDITVE 258 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccC-CceeEEEec
Confidence 45666666544221 223456888999999999999999999998655443 233444444
No 132
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=87.50 E-value=2.6 Score=32.46 Aligned_cols=33 Identities=21% Similarity=0.097 Sum_probs=28.2
Q ss_pred CceEEEEEEEeCcccccCCHHHHHHHHHHHHHH
Q 028771 85 TFRGYIAMLVVIKPYRGRGIATELVTRSIKVMM 117 (204)
Q Consensus 85 ~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~ 117 (204)
...+.|..+.|.+-.|++||++.|++.+...-.
T Consensus 181 ~~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 181 PAICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred CcEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 446779999999999999999999998876643
No 133
>PHA02769 hypothetical protein; Provisional
Probab=86.15 E-value=0.75 Score=30.86 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHH---HcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 105 ATELVTRSIKVMM---ESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 105 g~~ll~~~~~~~~---~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
|..|+..+...+. ..|+..+...-.++. +.++|.|.||+.++.
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdh--snaly~kagfk~vg~ 139 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDH--SNALYKKAGFKLVGQ 139 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCc--chhHHhhhhhhHhcc
Confidence 4556655555443 447776665556663 788999999998875
No 134
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=85.98 E-value=10 Score=31.36 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=71.3
Q ss_pred CCCChHHHHHHHHhhcCCC-----chHHHHHHHHhhCCC--eEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCccc
Q 028771 27 GEHHLPLIMNLVDQELSEP-----YSIFTYRYFVYLWPH--LSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPY 99 (204)
Q Consensus 27 ~~~d~~~i~~l~~~~~~~~-----~~~~~~~~~~~~~~~--~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~ 99 (204)
++++++.+..++......- .+.++|.......+. ..+++..+|++||+..+....+. .+-...+...++
T Consensus 211 ~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~~~~----LyGRYwG~~~~~ 286 (370)
T PF04339_consen 211 TDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRGDDT----LYGRYWGCDEEI 286 (370)
T ss_pred CHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEeCCE----EEEeeecccccc
Confidence 4456777777877765432 256666666665444 34556689999999988776433 333334455666
Q ss_pred ccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 100 RGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 100 Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
.+.-+-. ..=+.+++|.+.|++.+...+..+++ ...||.++.+.-
T Consensus 287 ~~LHFe~-cYYq~Ie~aI~~Gl~~f~~GaqGEHK------~~RGf~P~~t~S 331 (370)
T PF04339_consen 287 PFLHFEL-CYYQGIEYAIEHGLRRFEPGAQGEHK------IARGFEPVPTYS 331 (370)
T ss_pred cCcchHH-HHHHHHHHHHHcCCCEEECCcchhHH------HHcCCcccccee
Confidence 5544322 24468899999999987665443221 268999887643
No 135
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=84.24 E-value=7.5 Score=36.90 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=49.6
Q ss_pred ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEec
Q 028771 67 HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEV 130 (204)
Q Consensus 67 ~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 130 (204)
.+|+++|++.+.+... ..+.++.+--+|+. =.|+-..|+..++.++++.|++.+.|...+
T Consensus 428 ~~G~i~af~s~~p~~~---~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 428 ADGQVVALLSFVPWGR---RGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred CCCeEEEEEEEeeeCC---CCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 3699999999998642 24667766667775 789999999999999999999999997665
No 136
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=82.46 E-value=4.6 Score=33.77 Aligned_cols=107 Identities=9% Similarity=-0.037 Sum_probs=60.8
Q ss_pred CeEEEEEEC-CeEEEEEEEEecCCC-CCceEEEEEEEeCc--ccccCCHHHHHHHHHHHHHHHcCCcEEEEEE-------
Q 028771 60 HLSFLAFHK-GKCVGTVVCKMGEHR-STFRGYIAMLVVIK--PYRGRGIATELVTRSIKVMMESGCEEVTLEA------- 128 (204)
Q Consensus 60 ~~~~v~~~~-g~ivG~~~~~~~~~~-~~~~~~i~~l~V~p--~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~------- 128 (204)
...+.+.++ ++++|.+.+...... ....++|. =-| +|...-+-..+++.+.+++++.++-.+.+.-
T Consensus 35 ~~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yip---rGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~ 111 (406)
T PF02388_consen 35 VERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIP---RGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQER 111 (406)
T ss_dssp EEEEEEE-TTS-EEEEEEEEEEECTTTCEEEEET---T--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE
T ss_pred EEEEEEEeCCCeEEEEEEEEEeccCCceeEEEEC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhc
Confidence 345555565 667666544433222 22233332 234 7777788888899999998876544333321
Q ss_pred --------ecCCHHHHHHHHHCCCEEeeEEeecccCCcceeeEeccCCC
Q 028771 129 --------EVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLFPC 169 (204)
Q Consensus 129 --------~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~~~l~~ 169 (204)
...|...+..++++||...+....+.....+.+.+.+.|..
T Consensus 112 ~~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~~~~qpr~~~v~dL~~ 160 (406)
T PF02388_consen 112 DEDGEPIEGEENDELIENLKALGFRHQGFTKGYDDTIQPRWTYVKDLTG 160 (406)
T ss_dssp -TTS-EEEE-S-THHHHHHHHTT-CCTS-SSSTTSSSS-SEEEEEEGCC
T ss_pred ccccccccCcchHHHHHHHHhcCceecCcccCCCcccCccEEEEEECCC
Confidence 12456788999999999988665554446788888888865
No 137
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=81.17 E-value=13 Score=24.45 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=44.8
Q ss_pred EEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 64 LAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 64 v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
-++.++..=|.+.+.... ....+|..++|.+.-++.|++..+...+.+.. ..+...+.++|+ ..++|
T Consensus 13 ~~y~de~y~~~AIvt~~~---~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~-----~~L~Wrsr~~n~-~n~Wy 79 (98)
T cd03173 13 ASYADEPLEGVAIVTYEG---NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF-----PSLLWRVRENDA-NLKWY 79 (98)
T ss_pred EEEEcCCccEEEEEecCC---CCCEEEEEEEEcccccccCHHHHHHHHHHhhC-----CeeEEEeCCCCC-ccceE
Confidence 344344444444443322 23679999999999999999999999886552 456667776664 44555
No 138
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=80.73 E-value=25 Score=29.31 Aligned_cols=86 Identities=8% Similarity=-0.086 Sum_probs=64.5
Q ss_pred cCCCchHHHHHHHHhhCC----CeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHH
Q 028771 42 LSEPYSIFTYRYFVYLWP----HLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMM 117 (204)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~ 117 (204)
|..+|..+++...+.... ...+....+|.+|+........ . ...-....++|++=.--=|-.|+-.+++++.
T Consensus 250 f~~~~t~~fl~dL~~~~~~d~~~rl~gL~~G~~lvAV~~~lr~~--~--t~h~~l~a~dpe~~~~SPG~~lf~d~i~~~~ 325 (406)
T COG5653 250 FRAGWTRDFLRDLFTQRAEDGSGRLFGLHAGGRLVAVHGLLRQG--G--TYHAWLGAIDPEFARASPGMLLFLDLIEWAC 325 (406)
T ss_pred cccchHHHHHHHHHhccCcCCceEEEEEeeCCEEEEEEeeeccC--C--EEEEEeeccCHHHhhcCchHHHHHHHHHHHh
Confidence 456788888888776522 2345555778999998776543 2 2334446899999999999999999999999
Q ss_pred HcCCcEEEEEEecC
Q 028771 118 ESGCEEVTLEAEVT 131 (204)
Q Consensus 118 ~~g~~~i~l~~~~~ 131 (204)
..|+..+.+.|..+
T Consensus 326 ~~g~~~~DfgvG~q 339 (406)
T COG5653 326 GQGLARFDFGVGDQ 339 (406)
T ss_pred cCCCeEEeecCCCh
Confidence 99999888877654
No 139
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=79.78 E-value=14 Score=26.96 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=55.9
Q ss_pred EEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHH---HHHHHHCCCEEeeEEeecccCCcceeeEeccC
Q 028771 92 MLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGA---LALYGRLGFIRAKRLFRYYLNGVDAFRLKLLF 167 (204)
Q Consensus 92 ~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a---~~~y~k~GF~~~~~~~~~~~~~~~~~~m~~~l 167 (204)
.+..-|+-.=-+.-+.=+.+++++|.++ .+.++.+.....|..- .+-+.=+||+.+.--.-......+.++|...+
T Consensus 104 l~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~HP~~pp~~~~ffM~Y~~ 183 (191)
T KOG4387|consen 104 LFFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPDHPVVPPRPDVFFMVYPL 183 (191)
T ss_pred EEEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCCCCCCCCccceEEEEEee
Confidence 4555666666677888889999999887 8999988887766333 34445589988775433334457899998888
Q ss_pred CCC
Q 028771 168 PCP 170 (204)
Q Consensus 168 ~~~ 170 (204)
...
T Consensus 184 er~ 186 (191)
T KOG4387|consen 184 ERD 186 (191)
T ss_pred ccc
Confidence 654
No 140
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=77.93 E-value=1.7 Score=35.10 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=35.4
Q ss_pred eEEEEEECC----eEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHH
Q 028771 61 LSFLAFHKG----KCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMM 117 (204)
Q Consensus 61 ~~~v~~~~g----~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~ 117 (204)
.++|...-| ++|||..=-.. +.....+..|-+.|.||++|+|+.|++..-...+
T Consensus 235 lFYvl~~~~~~~~h~vGyFSKEK~---S~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 235 LFYVLTERGDTGCHLVGYFSKEKE---SEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred EEEEEEEcCCcceeeeeeechhhc---ccccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 355555322 47777533222 2223568889999999999999999887655443
No 141
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=76.71 E-value=4.4 Score=35.18 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=50.0
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
.++..+.---|+.+.+++-++..++..|..-..+.|..++.+-+.||.++||...+.
T Consensus 822 ~~~~~~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~ 878 (891)
T KOG3698|consen 822 TYFGMDASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGL 878 (891)
T ss_pred hccccccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhH
Confidence 355556667899999999999999999999999999999999999999999987664
No 142
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=74.58 E-value=21 Score=31.10 Aligned_cols=61 Identities=13% Similarity=0.032 Sum_probs=49.4
Q ss_pred EECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEe
Q 028771 66 FHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAE 129 (204)
Q Consensus 66 ~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~ 129 (204)
..+|++|||..+.+.... ....|+.+--+|+.= +|+-..|+..++.++++.|++.+.+...
T Consensus 399 ~~~g~VvaFa~l~~~~~~--~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgmA 459 (538)
T COG2898 399 DNEGEVVAFANLMPTGGK--EGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGMA 459 (538)
T ss_pred cCCCCeEEEEeecccCCc--ceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCCc
Confidence 367889999999886533 346677777777753 6999999999999999999999988655
No 143
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=69.27 E-value=5.8 Score=26.36 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=17.7
Q ss_pred EEEEEEecCCHHHHHHHHHCCCEEee
Q 028771 123 EVTLEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 123 ~i~l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
.+.+.|.. =.+|+.||+++||+...
T Consensus 3 ~i~l~V~D-~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 3 AVGIVVAD-MAKSLDFYRRLGFDFPE 27 (122)
T ss_pred eEEEEecc-HHHHHHHHHHhCceecC
Confidence 45555533 35799999999998753
No 144
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=69.11 E-value=8.6 Score=25.69 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCCEEee
Q 028771 133 KGALALYGRLGFIRAK 148 (204)
Q Consensus 133 ~~a~~~y~k~GF~~~~ 148 (204)
.+|+.||+.+||+...
T Consensus 12 ~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 12 EKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHCCCEEcc
Confidence 6899999999999764
No 145
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=65.93 E-value=59 Score=25.58 Aligned_cols=113 Identities=12% Similarity=-0.042 Sum_probs=68.9
Q ss_pred hcccccCCCCeEEeecCCCCChHH-HHHHHHhhcCCC-chHHHHHHHHhhCCC--eEEEEEECCeEEEEEEEEecCCCCC
Q 028771 10 MHKAEFDPPEIEYVSYGGEHHLPL-IMNLVDQELSEP-YSIFTYRYFVYLWPH--LSFLAFHKGKCVGTVVCKMGEHRST 85 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~~-i~~l~~~~~~~~-~~~~~~~~~~~~~~~--~~~v~~~~g~ivG~~~~~~~~~~~~ 85 (204)
+.+.......++-...-+++++.. ..+|+...+... +..+.+...+..-++ ...|.+-+|++||+-.+.....+.-
T Consensus 119 lrkF~~~GG~v~~v~~~S~~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~l~~~P~Aiqlv~k~es~~w 198 (264)
T PF07395_consen 119 LRKFIEAGGSVRPVSEFSPEELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLFLNGQPCAIQLVYKVESPKW 198 (264)
T ss_pred HHHHHHcCCEEEEHHHCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCe
Confidence 333344555555555554555433 334555555432 344555555554333 3466778999999998877654432
Q ss_pred ceEEEEEEEeCcccccCCHHHHHH----HHHHHHHHHcCCc
Q 028771 86 FRGYIAMLVVIKPYRGRGIATELV----TRSIKVMMESGCE 122 (204)
Q Consensus 86 ~~~~i~~l~V~p~~Rg~Gig~~ll----~~~~~~~~~~g~~ 122 (204)
-....-..+++|+++..-.|+.|+ +.+.+++.+.|..
T Consensus 199 v~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~ 239 (264)
T PF07395_consen 199 VYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKP 239 (264)
T ss_pred EEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCCc
Confidence 233344578999999999999885 6666667666643
No 146
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=65.54 E-value=14 Score=29.31 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=67.8
Q ss_pred cccCCCCeEEeecCCCCChH-HHHHHHHhhcCCCc---hHHHHHHHHhhCCC--eEEEEEECCeEEEEEEEEecCCCCCc
Q 028771 13 AEFDPPEIEYVSYGGEHHLP-LIMNLVDQELSEPY---SIFTYRYFVYLWPH--LSFLAFHKGKCVGTVVCKMGEHRSTF 86 (204)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~-~i~~l~~~~~~~~~---~~~~~~~~~~~~~~--~~~v~~~~g~ivG~~~~~~~~~~~~~ 86 (204)
......+++-..--+++++. -..+|+...+.... ..+...+.+..-++ ...|.+-+|+++|+-.+.....+.--
T Consensus 150 F~~~GG~v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VLfl~~~PcA~qlv~k~eSp~wi 229 (298)
T PRK15312 150 FLRNGGSVKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHILYIEGIPCAFDIVLKSESQMNV 229 (298)
T ss_pred HHHcCCEEEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEEEECCcceEEEEEEEecCCCcE
Confidence 33445555555555555543 33445556665433 46666666655443 35677789999999988776544332
Q ss_pred eEEEEEEEeCcccccCCHHHHHH----HHHHHHHHHcC
Q 028771 87 RGYIAMLVVIKPYRGRGIATELV----TRSIKVMMESG 120 (204)
Q Consensus 87 ~~~i~~l~V~p~~Rg~Gig~~ll----~~~~~~~~~~g 120 (204)
....-..+++|+++..-.|+.|+ +.+.+.+.+.|
T Consensus 230 ~~D~iNgG~Dpe~~~~spGSIL~WlNi~~A~~~~~~~~ 267 (298)
T PRK15312 230 YFDVPNGAVKNECMPLSPGSILMWLNISRARHYCQERQ 267 (298)
T ss_pred EEecccCccCcccccCCCccEEEEecHHHHHHHHHhcC
Confidence 33444578999999999998874 55555565555
No 147
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=63.86 E-value=7.3 Score=25.77 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCEEeeEE
Q 028771 133 KGALALYGRLGFIRAKRL 150 (204)
Q Consensus 133 ~~a~~~y~k~GF~~~~~~ 150 (204)
.+|++||+.+||+.....
T Consensus 13 ~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 13 AESKQFYQALGFELEWEN 30 (113)
T ss_pred HHHHHHHHHhCCeeEecC
Confidence 679999999999987654
No 148
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=63.18 E-value=6.7 Score=26.94 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 120 GCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
++.++.+.|.. =.+|++||+++||+...+
T Consensus 3 ~i~Hi~i~v~D-l~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVRD-LEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeCC-HHHHHHHHHHcCCEEccc
Confidence 34566666653 357999999999987654
No 149
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=62.15 E-value=12 Score=24.92 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCEEeeEEe
Q 028771 133 KGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 133 ~~a~~~y~k~GF~~~~~~~ 151 (204)
.+|++||+++||+......
T Consensus 14 ~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 14 DATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 6899999989999876544
No 150
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=59.20 E-value=22 Score=26.47 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=39.1
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEee
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFR 152 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~ 152 (204)
+...+++|..|+|.++|..+ |++.+.|.+. |+.-+.-.+..|.+.+.+...
T Consensus 120 lg~~~D~R~ygigAqIL~dL-------GI~~irLLtn--np~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 120 LGFPADERDYGIGAQILKDL-------GIKKIRLLTN--NPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred hcCCchHHHHHHHHHHHHHc-------CCcEEEEecC--ChHHHHHHHhCCceEEEEeec
Confidence 66789999999999998776 9999998775 555556667778666665433
No 151
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=58.00 E-value=1e+02 Score=25.81 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=47.4
Q ss_pred CeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEE-EecCCHH---HHHHHH-HCC
Q 028771 69 GKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLE-AEVTNKG---ALALYG-RLG 143 (204)
Q Consensus 69 g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~-~~~~N~~---a~~~y~-k~G 143 (204)
+.+++.+.+....+. ..++ .-+-.++||..+-...|.-+++.+|.+.|+....+. +...... ..++|+ |.|
T Consensus 302 ~~~la~~l~~~~g~~---~~yl-y~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~Gi~~~~~~~~~~~Gl~~FK~~ 377 (406)
T PF02388_consen 302 EIPLAGALFIYYGDE---AYYL-YGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFGGISGDFDGSDPDYGLYKFKKG 377 (406)
T ss_dssp EEEEEEEEEEEETTE---EEEE-EEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEEE-SSSSTTTHTTHHHHHHHHC
T ss_pred cceEEEEEEEEECCE---EEEE-ECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEeeCCCCCCCCCcccchHHHHhhc
Confidence 445666555444322 3333 468899999999999999999999999999988774 4332222 346665 556
Q ss_pred CE
Q 028771 144 FI 145 (204)
Q Consensus 144 F~ 145 (204)
|-
T Consensus 378 F~ 379 (406)
T PF02388_consen 378 FG 379 (406)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 152
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=57.95 E-value=54 Score=21.91 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=24.2
Q ss_pred eCcccccCCHHHHHHHHHHHHHHH-cCCcEEEEEEecCCHHHHHHHH---HCCCEEeeE
Q 028771 95 VIKPYRGRGIATELVTRSIKVMME-SGCEEVTLEAEVTNKGALALYG---RLGFIRAKR 149 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~-~g~~~i~l~~~~~N~~a~~~y~---k~GF~~~~~ 149 (204)
+.+..-++| -|.-+-++++.|.+ .++.++.+-+..+......+-+ =+||+.+.-
T Consensus 30 ip~~~~~~~-~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 30 IPSSALGQG-SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred ECCcccccc-cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 444444444 66777788888876 4999999888766644444444 477777663
No 153
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=54.09 E-value=26 Score=24.26 Aligned_cols=48 Identities=27% Similarity=0.205 Sum_probs=36.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 98 PYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 98 ~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
+-||-|||+.+++.+.+...+ .+.+...-.|.-|-.-.-|.|-..-.+
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~----~~eI~AlGTNa~AT~~MlKaGA~~gAT 53 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE----EVEIIALGTNAIATSAMLKAGANEGAT 53 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC----CcEEEEEehhHHHHHHHHHcCCCCccc
Confidence 458999999999998777654 356666777877888888888876544
No 154
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=53.62 E-value=37 Score=23.34 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=18.0
Q ss_pred EEEEEEecCCHHHHHHHH-HCCCEEeeEE
Q 028771 123 EVTLEAEVTNKGALALYG-RLGFIRAKRL 150 (204)
Q Consensus 123 ~i~l~~~~~N~~a~~~y~-k~GF~~~~~~ 150 (204)
++.+.|. +-.+|++||+ .+||+...+.
T Consensus 5 Hv~irV~-DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 5 HFVFKVG-NRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCEEEeee
Confidence 3444443 3368999995 5999986643
No 155
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=53.39 E-value=1.3e+02 Score=24.98 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=60.4
Q ss_pred eEEEEEECCeEEEEEEEEecCCCC------------------------------CceEEEEEEEeCcccccCCHHHHHHH
Q 028771 61 LSFLAFHKGKCVGTVVCKMGEHRS------------------------------TFRGYIAMLVVIKPYRGRGIATELVT 110 (204)
Q Consensus 61 ~~~v~~~~g~ivG~~~~~~~~~~~------------------------------~~~~~i~~l~V~p~~Rg~Gig~~ll~ 110 (204)
..++++++|++||.+-++...+.. .+.. =..+.++|......+...|++
T Consensus 45 ~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~-G~R~l~~~~~~~~~~~~~L~~ 123 (370)
T PF04339_consen 45 RHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVT-GPRLLIAPGADRAALRAALLQ 123 (370)
T ss_pred eEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCc-ccceeECCCCCHHHHHHHHHH
Confidence 467888999999999887762210 0000 013677888888889999999
Q ss_pred HHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 111 RSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 111 ~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
.+.+.+.+.|+.-+-+... +..-....+..||.....
T Consensus 124 ~~~~~a~~~~~Ss~h~lF~--~~~~~~~l~~~G~~~r~~ 160 (370)
T PF04339_consen 124 ALEQLAEENGLSSWHILFP--DEEDAAALEEAGFLSRQG 160 (370)
T ss_pred HHHHHHHHcCCCcceeecC--CHHHHHHHHhCCCceecC
Confidence 9999999998776554322 234557778999987543
No 156
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=53.31 E-value=27 Score=23.85 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=20.2
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 122 EEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 122 ~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
.++.+.|. +=.+|.+||++ +||+...+.
T Consensus 2 ~Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 2 DHVEFYVG-NAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred eEEEEEeC-CHHHHHHHHHHhcCCeEEEec
Confidence 45566653 33679999998 999987653
No 157
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=51.07 E-value=28 Score=25.22 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=27.6
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
..+++|--|+|.++|..+ |++.+.|.+. |+.-+.-.+.+|-+.+++.
T Consensus 121 ~~~d~R~ygigaqIL~dL-------GV~~~rLLtn--np~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 121 FPEDLRDYGIGAQILRDL-------GVKKMRLLTN--NPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp --S----THHHHHHHHHT-------T--SEEEE-S---HHHHHHHHHTT--EEEEE
T ss_pred CccccccHHHHHHHHHHc-------CCCEEEECCC--ChhHHHHHhcCCCEEEEEe
Confidence 357889999999888766 8888877554 5677778889998887764
No 158
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=50.44 E-value=71 Score=21.01 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=44.5
Q ss_pred EEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 62 SFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 62 ~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
.+-++.++..=+.+.+.+.. ....++..+.|...-++.|++..+...+.+.. ..+...+.++|+ ...+|
T Consensus 11 ~~k~Y~de~~~a~AIV~~~~---~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d~-----p~L~W~~r~~n~-~~~W~ 79 (98)
T cd04263 11 PFKAYGDEPMEVLAIVLPPS---GEVATLATFTITKSGWLNNVADNIFTAIKKDH-----PKLVWTVREDDE-NLKWH 79 (98)
T ss_pred CeEEEecCCCcEEEEEecCC---CCCEEEEEEEEccccccccHHHHHHHHHHhhC-----CeeEEEeCCCCC-ccceE
Confidence 34455555433333333322 33688999999999999999999999876552 456667776664 34444
No 159
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=50.26 E-value=99 Score=22.66 Aligned_cols=107 Identities=8% Similarity=-0.018 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHhhc---CCCchHHHHHHHH----hhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccc
Q 028771 28 EHHLPLIMNLVDQEL---SEPYSIFTYRYFV----YLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYR 100 (204)
Q Consensus 28 ~~d~~~i~~l~~~~~---~~~~~~~~~~~~~----~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~R 100 (204)
..+++.+.+--...- ...|-.+.+.+.+ ...-...+=+++++++||.........- ..--.++...
T Consensus 59 n~~F~~Vi~~Ca~~~~~~~~TWI~~~~~~aY~~Lh~~G~aHSvEvw~~~~LvGGlyGv~iG~~---F~GESMFs~~---- 131 (173)
T PF03588_consen 59 NTAFEEVIRACAEPRRGQDGTWITPEMIEAYTELHELGYAHSVEVWQGGELVGGLYGVAIGGV---FFGESMFSRV---- 131 (173)
T ss_dssp SS-HHHHHHHHHTSS--STGTTS-HHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEEEEETTE---EEEEEEEESS----
T ss_pred CCCHHHHHHHHccCCCCCCCCCcCHHHHHHHHHHHHcCeeEEEeeecCCeeEEeeeCEEECCE---EEeccccccC----
Confidence 345666666555443 2346444444333 3343456667799999998877655311 1222333333
Q ss_pred cCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEee
Q 028771 101 GRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
.+-++..|-++.+.+++.|+..+.+-+ .|+ ..+++|-+.+.
T Consensus 132 -~~ASKval~~L~~~L~~~g~~liD~Q~--~~~----hl~slGa~~i~ 172 (173)
T PF03588_consen 132 -SNASKVALVALVEHLRQCGFQLIDCQM--PTP----HLASLGAKEIP 172 (173)
T ss_dssp -TTHHHHHHHHHHHHHHHTT--EEEEES----H----HHHHTTEEEE-
T ss_pred -CChHHHHHHHHHHHHHHCCCcEEEecc--CCH----HHHhcCCEeCC
Confidence 467999999999999999987665544 332 45778876543
No 160
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=50.07 E-value=26 Score=27.10 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEe---cCCHHHHHHHHHCCCEEeeE
Q 028771 105 ATELVTRSIKVMMESGCEEVTLEAE---VTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~i~l~~~---~~N~~a~~~y~k~GF~~~~~ 149 (204)
...-..++++.++..|+++|.+.+. .-|.....||++.||+....
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 3444566777777789999988553 45677899999999998775
No 161
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.07 E-value=38 Score=25.70 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=29.1
Q ss_pred HHHHHHHcCCcEEEEEE---ecCCHHHHHHHHHCCCEEeeE
Q 028771 112 SIKVMMESGCEEVTLEA---EVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 112 ~~~~~~~~g~~~i~l~~---~~~N~~a~~~y~k~GF~~~~~ 149 (204)
+++.++..|.+++.+.+ .+-|.+...|+++.||+.+..
T Consensus 109 vv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 109 VVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 44455556888887754 578899999999999998664
No 162
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=50.00 E-value=41 Score=25.11 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=35.1
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
..+++|..|+|.++|..+ |++.+.|.+. |..-+.-...+|.+.++..
T Consensus 123 ~~~d~R~yGiGAQIL~dL-------GV~~mrLLtn--~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 123 FAADERDYTLAADMLKAL-------GVKKVRLLTN--NPKKVEALTEAGINIVERV 169 (197)
T ss_pred CCccceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 466799999999998876 9999988665 3334445568888887654
No 163
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=49.19 E-value=38 Score=28.23 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=33.8
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
+...+++|..|+|.++|+.+ |++.+.|.+. |+.-+.-.+.+|.+.+++.
T Consensus 307 lg~~~D~RdygigAqIL~dL-------GV~~irLLTN--np~K~~~L~~~GieV~~~v 355 (387)
T PRK09318 307 LGFKEDERDYAAAFQILKAL-------GIEKVRLLTN--NPRKTKALEKYGIEVVETV 355 (387)
T ss_pred cCCCccceeeeHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 34556677777777776655 8888877554 5555666778888887664
No 164
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=48.90 E-value=22 Score=25.45 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCcEEEEEEec--CC--HHHHHHHHHCCCEEeeEEeec
Q 028771 109 VTRSIKVMMESGCEEVTLEAEV--TN--KGALALYGRLGFIRAKRLFRY 153 (204)
Q Consensus 109 l~~~~~~~~~~g~~~i~l~~~~--~N--~~a~~~y~k~GF~~~~~~~~~ 153 (204)
+++++++++..|+++|-+..-. .+ ....+++++.||+..+.....
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~CKv 91 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVCCKV 91 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 7889999999999999885421 12 223566789999998876554
No 165
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=48.20 E-value=50 Score=24.50 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=35.1
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
-.+++|..|+|.++|..+ |++.+.|.+. |..-+.-.+.+|-+.++..
T Consensus 120 ~~~d~R~yGiGAQIL~dL-------GV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 120 FPADERDFSLCADILEDL-------GVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred CcccceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 455699999999998877 9999988766 3345555667888777654
No 166
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=47.46 E-value=4.3 Score=36.26 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=65.2
Q ss_pred hCCCeEEEEEECCe-EEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcC-CcEEEEEEecCCHH
Q 028771 57 LWPHLSFLAFHKGK-CVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESG-CEEVTLEAEVTNKG 134 (204)
Q Consensus 57 ~~~~~~~v~~~~g~-ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g-~~~i~l~~~~~N~~ 134 (204)
...+..+....+++ +||..+.++.+..+ ...|-.-+|.-+.|-+|.|+-++.++.++.+... +..+...+.. .
T Consensus 416 d~~h~~~~~~~d~~g~vggi~~r~f~~k~--f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~---~ 490 (720)
T KOG1472|consen 416 DTSHHVMARIKDNEGVVGGICFRPFPEKG--FTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADE---G 490 (720)
T ss_pred ccccccceeeccccccccccccCcCcccC--CcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhh---c
Confidence 34455666554444 99999888876543 4567778899999999999999999999998764 4444444443 4
Q ss_pred HHHHHHHCCCEEeeEE
Q 028771 135 ALALYGRLGFIRAKRL 150 (204)
Q Consensus 135 a~~~y~k~GF~~~~~~ 150 (204)
++..+++.||...-.+
T Consensus 491 aigyfkkqgfs~ei~~ 506 (720)
T KOG1472|consen 491 AIGYFKKQGFSKEIKF 506 (720)
T ss_pred ccccccCccchhhccc
Confidence 8899999999865443
No 167
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=47.05 E-value=53 Score=24.09 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 105 ATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
|+-|+.++++.+++ .+..+.+.++++-+....+.++.|++...+.
T Consensus 26 GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tp 70 (177)
T COG2266 26 GKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETP 70 (177)
T ss_pred CccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcC
Confidence 57788999988887 6888999999998889999999998877654
No 168
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=46.20 E-value=1.3e+02 Score=24.44 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=69.8
Q ss_pred ecCCCCChHHHHHHHHhhcCC-----CchHHHHHHHHhh------CC-CeEEEEE-ECCeEEEEEEEEecCCC-------
Q 028771 24 SYGGEHHLPLIMNLVDQELSE-----PYSIFTYRYFVYL------WP-HLSFLAF-HKGKCVGTVVCKMGEHR------- 83 (204)
Q Consensus 24 ~~~~~~d~~~i~~l~~~~~~~-----~~~~~~~~~~~~~------~~-~~~~v~~-~~g~ivG~~~~~~~~~~------- 83 (204)
+.+...|++++.+|+.+.... .++.+.+...+.. .+ ...+|++ .+|+|-+|..++..+..
T Consensus 262 R~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n~ky 341 (451)
T COG5092 262 RLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIENKKY 341 (451)
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecCccc
Confidence 445688999999998875432 1122222222111 11 1245555 68999999888766421
Q ss_pred -CCceEEEEEEEeCcccccCCHH-----------HHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 84 -STFRGYIAMLVVIKPYRGRGIA-----------TELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 84 -~~~~~~i~~l~V~p~~Rg~Gig-----------~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
....+|+...+.+..+. -+. ..|+..++-.++..|++.+...+.-+|. -|...++|..-.-..
T Consensus 342 kdiq~gYLYYya~d~~~k--d~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~---lFL~dLkFg~GdGfl 416 (451)
T COG5092 342 KDIQGGYLYYYAGDDQFK--DFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNS---LFLADLKFGCGDGFL 416 (451)
T ss_pred cccceeEEEEEccCcccc--ccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccch---hHHHhcCccCCCcee
Confidence 22345666555544222 222 2233333444555577777666666664 478899998755555
Q ss_pred ecc
Q 028771 152 RYY 154 (204)
Q Consensus 152 ~~~ 154 (204)
+||
T Consensus 417 nyY 419 (451)
T COG5092 417 NYY 419 (451)
T ss_pred EEE
Confidence 554
No 169
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=45.24 E-value=46 Score=29.15 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=32.5
Q ss_pred EeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 94 VVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 94 ~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
...++.|..|+|.++|..+ |++.+.|.+. |+.-+.-.+.+|.+.+++.+
T Consensus 331 G~~~D~RdYgigAQIL~dL-------GI~kIrLLTN--NP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 331 GFPADLRNYGVGAQILNDL-------GIKRLRLITN--NPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred CCcccceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 3444555555555555444 8888887653 66667778899999887753
No 170
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=44.34 E-value=65 Score=20.94 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=20.0
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
+.++.+.|.. =..|..||++ +||+.....
T Consensus 2 i~hv~l~v~d-~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 2 LHHVTLITRD-AQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cccEEEEcCC-hhHhHHHHHHccCCEEeeeE
Confidence 4556665533 2579999986 899987653
No 171
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=43.91 E-value=1.5e+02 Score=22.90 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=65.7
Q ss_pred CCChHHHHHHHHhhc---CCCchH----HHHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccc
Q 028771 28 EHHLPLIMNLVDQEL---SEPYSI----FTYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYR 100 (204)
Q Consensus 28 ~~d~~~i~~l~~~~~---~~~~~~----~~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~R 100 (204)
..+++++.+--...- ...|-. +.|......+-...+-++++|++||........ .++.+ -.-=.|
T Consensus 89 n~aF~~Vi~~Ca~~~~~~~~TWI~~e~~~aY~~LH~~G~AHSVE~W~~~~LvGGlYGv~iG-----~~F~G---ESMFs~ 160 (233)
T PRK00301 89 DTAFAAVIRACAAPRPGQEGTWITPEIIEAYLELHELGHAHSVEVWQGGELVGGLYGVALG-----RAFFG---ESMFSR 160 (233)
T ss_pred cccHHHHHHHHccCCCCCCCCCCCHHHHHHHHHHHHcCceEEEEEEECCEEEeeeeccccC-----CEEee---cccccC
Confidence 345666555444321 224533 333333344445667778999999988665432 12222 122234
Q ss_pred cCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 101 GRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
...-++..+-++.+.++..|+..+ ++.-.|. ..+++|-+.+.+
T Consensus 161 ~~nASKvAl~~L~~~L~~~g~~li--D~Q~~t~----HL~slGa~~i~R 203 (233)
T PRK00301 161 ATDASKVALAALVEHLRRHGFKLI--DCQVLNP----HLASLGAREIPR 203 (233)
T ss_pred CCChHHHHHHHHHHHHHHCCceEE--EECCCCH----HHHhcCCEEcCH
Confidence 468899999999999999988744 4444443 578899988775
No 172
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.50 E-value=43 Score=27.76 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=27.4
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 96 IKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 96 ~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
.+++|.-|+|.++|+.+ |++.+.|.+ |+.-+.-.+.+|.+.+.+.
T Consensus 318 ~~d~R~y~igaqIL~~L-------gv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 318 PVDYRTYGIGAQILRDL-------GVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred CcccceehHHHHHHHHc-------CCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 44455555555554443 888888876 3345555677888877553
No 173
>PHA00771 head assembly protein
Probab=43.31 E-value=79 Score=21.89 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=45.9
Q ss_pred eEEEEEEEeCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeecccCCcceeeEe
Q 028771 87 RGYIAMLVVIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLK 164 (204)
Q Consensus 87 ~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~ 164 (204)
..+... .-+|++||+-- +.-....+|..+. .+..+...+...-.-.+-.-+-+|.+.++.+.+++..+.+..++.
T Consensus 62 ~~ecHa-~y~P~fRG~ya--~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG~id~a~~g~~~vT~Yq 137 (151)
T PHA00771 62 TFDCHA-MYLPEIRGFSK--EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYS 137 (151)
T ss_pred EEEEEe-eeCccccchhH--HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceeeeHHHHhcCCCceEEEE
Confidence 344443 35899998743 6666777777665 444443333322223444557799999999998885555555443
No 174
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=43.14 E-value=43 Score=25.22 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHHc--CCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 103 GIATELVTRSIKVMMES--GCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 103 Gig~~ll~~~~~~~~~~--g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
|+|..++..+++..... ....+.|-.......-+++....||....+.
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeE
Confidence 99999999999988754 4456666555444567788899999998864
No 175
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=41.37 E-value=1.5e+02 Score=22.06 Aligned_cols=108 Identities=12% Similarity=0.074 Sum_probs=64.7
Q ss_pred CCChHHHHHHHHhhc-CCCchHH----HHHHHHhhCCCeEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccC
Q 028771 28 EHHLPLIMNLVDQEL-SEPYSIF----TYRYFVYLWPHLSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGR 102 (204)
Q Consensus 28 ~~d~~~i~~l~~~~~-~~~~~~~----~~~~~~~~~~~~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~ 102 (204)
..+++++.+--...- ...|-.+ .|.......-...+=++++|++||......... ++.+ -.-=.|..
T Consensus 61 n~~F~~Vi~~Ca~~r~~gTWI~~e~~~aY~~LH~~G~AHSvEvw~~~~LvGGlYGv~iG~-----~F~G---ESMFs~~~ 132 (185)
T TIGR00667 61 NYAFGQVIEGCASDRPEGTWISDELVEAYHRLHELGHAHSFEVWQGDELVGGMYGIAQGG-----LFCG---ESMFSRMT 132 (185)
T ss_pred cCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhCceEEEEEEECCEEEEeeeeeeeCC-----eEEe---ccccccCC
Confidence 345666655444211 2245333 333333444556677789999999887654321 2222 11224556
Q ss_pred CHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 103 GIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 103 Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
.-+|..|-++.+.+++.|+..+ ++.-.|+ ..+++|-+.+.+
T Consensus 133 nASKvAl~~L~~~L~~~g~~li--DcQ~~t~----HL~slGa~ei~R 173 (185)
T TIGR00667 133 NASKTALLVFCEHFIRHGGQLI--DCQVQNP----HLASLGAYEVPR 173 (185)
T ss_pred ChhHHHHHHHHHHHHHCCCcEE--EECCCCH----HHHhcCCEEcCH
Confidence 7889999999999999988755 4444443 468888887664
No 176
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=41.36 E-value=41 Score=24.90 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=16.5
Q ss_pred CeEEEEEECCeEEEEEEEEec
Q 028771 60 HLSFLAFHKGKCVGTVVCKMG 80 (204)
Q Consensus 60 ~~~~v~~~~g~ivG~~~~~~~ 80 (204)
..+.|+..||+++|++.+...
T Consensus 163 d~viVv~~ng~~vGVg~a~~~ 183 (202)
T COG5270 163 DEVIVVSENGRVVGVGIAKKS 183 (202)
T ss_pred CeEEEEecCCEEEEEEEEecC
Confidence 456777789999999988654
No 177
>PRK08815 GTP cyclohydrolase; Provisional
Probab=40.70 E-value=60 Score=27.01 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=36.2
Q ss_pred EEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 93 LVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 93 l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
+...+++|.-|+|.++|+.+ |++++.|.+. |+.-+.-.+.+|.+.+++.
T Consensus 292 lg~~~D~RdygigAQIL~dL-------GV~kirLLTn--np~K~~~L~g~gieVv~~v 340 (375)
T PRK08815 292 LGFGPDERRYGSAVAMLRGL-------GITRVRLLTN--NPTKAERLRAAGIEVEDRI 340 (375)
T ss_pred cCCCccceeeeHHHHHHHHc-------CCCeEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 44567788999988888765 8998888665 4445556678888888764
No 178
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=40.56 E-value=28 Score=22.68 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=20.0
Q ss_pred CcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 121 CEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
+.++.+.|.. =.++..||+.+||+...+
T Consensus 3 i~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 4556665542 257999999999998654
No 179
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=39.71 E-value=2.4e+02 Score=23.98 Aligned_cols=100 Identities=9% Similarity=-0.033 Sum_probs=59.7
Q ss_pred EEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCc--ccccCCHHHHHHHHHHHHHHHcCCcEEEEEEe----------
Q 028771 62 SFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIK--PYRGRGIATELVTRSIKVMMESGCEEVTLEAE---------- 129 (204)
Q Consensus 62 ~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p--~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~---------- 129 (204)
.+.+..++..|+.+.+........ .+...+-=-| +|=++.+-..++..+.+.+++..+-.+.+.-.
T Consensus 42 ~~~v~~~~~~v~aa~ll~k~~~~~--~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~~~l~i~idP~l~~~~~~~~~ 119 (418)
T COG2348 42 LIGVKKDGNAVIAASLLSKKLPLG--FYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSKRALFIKIDPYLVYQQFDLGG 119 (418)
T ss_pred eEEEEecCceeeeeeeeeeeccCC--ceEEEecCCCcccccchHHHHHHHHHHHHHHhhccceEEEeccchhhhcccCCC
Confidence 456667777666665554432221 1111111133 88888888888888888888764433332211
Q ss_pred -----cCCHHHHHHHHHCCCEEeeEEeecccCCcceeeE
Q 028771 130 -----VTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRL 163 (204)
Q Consensus 130 -----~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m 163 (204)
..|.+.+..+..+|++..+-..++-...++.+..
T Consensus 120 ~~~~~~~n~~~i~~l~~lG~k~~g~t~~~~~~iqp~~~~ 158 (418)
T COG2348 120 EIIENYNNLAIIKLLKDLGYKHSGFTKGLDDSIQPRWHS 158 (418)
T ss_pred ccccCcchHHHHHHHHHhhhhhcCcccccCcccccchhh
Confidence 4567889999999999887655554333333333
No 180
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=39.63 E-value=60 Score=27.73 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=30.7
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
..+++|..|+|.++|+.+ |++.+.|.+. |+.-+.-.+.+|.+.+.+.
T Consensus 362 ~~~D~RdygigAqIL~dL-------GI~~irLLTN--Np~K~~~L~~~GieVve~v 408 (450)
T PLN02831 362 LPVDSREYGIGAQILRDL-------GVRTMRLMTN--NPAKYTGLKGYGLAVVGRV 408 (450)
T ss_pred CcccceehHHHHHHHHHc-------CCCEEEECCC--CHHHHHHHhhCCCEEEEEe
Confidence 445566666666665554 7888777554 5555666778888887654
No 181
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=39.22 E-value=34 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=18.9
Q ss_pred cEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 122 EEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 122 ~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
.++.+.|.. =.+|.+||+.+||+...+
T Consensus 5 ~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 5 AHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 445555542 357999999999987654
No 182
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=38.76 E-value=1.5e+02 Score=21.47 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=50.9
Q ss_pred ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHH--------
Q 028771 67 HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALAL-------- 138 (204)
Q Consensus 67 ~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~-------- 138 (204)
.+|+.+|-+.+....+... -|+.-+.|.|-++|.-+-..+...+-+.+.-- ..+++.-..++.-..++
T Consensus 36 e~ge~l~~l~vF~GR~yyt--PW~Eifnv~Pv~~gs~~E~~l~~~l~~~lspg--~~lfVeYv~DrET~~~lqkG~~p~a 111 (192)
T COG4353 36 ENGEQLGKLKVFKGRDYYT--PWLEIFNVNPVFRGSELEVKLYKVLYNFLSPG--GKLFVEYVRDRETRYRLQKGKPPVA 111 (192)
T ss_pred cCCceeeEEEEEcCCcccc--chhhccccCCccCCCHHHHHHHHHHHHhcCCC--CceEEEEEechhHHHHHHcCCCCcc
Confidence 5588888877655444333 34554679999999999999988887776543 33555544444444443
Q ss_pred ------HHHCCCEEee
Q 028771 139 ------YGRLGFIRAK 148 (204)
Q Consensus 139 ------y~k~GF~~~~ 148 (204)
..|+||+...
T Consensus 112 trLGfeL~k~Gftwfk 127 (192)
T COG4353 112 TRLGFELLKAGFTWFK 127 (192)
T ss_pred chhhHHHHhCcceeee
Confidence 3577887655
No 183
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.37 E-value=73 Score=26.78 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=27.0
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
..+++|..|+|.++|+.+ |++.+.|.+. |+.=+.-.+.+|.+.+++.
T Consensus 328 ~~~D~Rdyg~gaqIL~~L-------Gv~~irLLTn--np~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 328 FPADARDYGIGAQILVDL-------GVRSMRLLTN--NPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred CCccceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHhhCCCEEEEEe
Confidence 344555555555555443 7777766553 4444445567777776554
No 184
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=36.38 E-value=35 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=20.3
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEee
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAK 148 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~ 148 (204)
++.++.+.|.. =.+|+.||++ +||+...
T Consensus 4 ~i~Hv~i~V~D-le~s~~FY~~~LG~~~~~ 32 (162)
T TIGR03645 4 TFSHIGISVPD-LDAAVKFYTEVLGWYLIM 32 (162)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEEe
Confidence 45677776653 3579999976 8998754
No 185
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=36.17 E-value=20 Score=22.46 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHC
Q 028771 107 ELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRL 142 (204)
Q Consensus 107 ~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~ 142 (204)
.||..+.+.-+...--.++|++.|.+..|+..|...
T Consensus 3 ~LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 3 ELLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 455555555444322457899999999999998764
No 186
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=35.99 E-value=40 Score=21.74 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.4
Q ss_pred HHHHHHHHH-CCCEEee
Q 028771 133 KGALALYGR-LGFIRAK 148 (204)
Q Consensus 133 ~~a~~~y~k-~GF~~~~ 148 (204)
..+..||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 12 EAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHhcCceEEE
Confidence 578999987 9999753
No 187
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=35.53 E-value=41 Score=25.38 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEee
Q 028771 102 RGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAK 148 (204)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~ 148 (204)
+|||..-.+.++-+|..+ ..+-++. -+.+|+.++|+....
T Consensus 121 KGIG~ETaDsILlYa~~r----p~FVvD~---Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDR----PVFVVDK---YTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcC----cccchhH---HHHHHHHHhcccccc
Confidence 799999999999999765 2333343 599999999998864
No 188
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.42 E-value=1.2e+02 Score=20.26 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=44.8
Q ss_pred eEEEEE-ECCeEEEEEEEEecCCCCCceEEEEEEEeCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHH
Q 028771 61 LSFLAF-HKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALY 139 (204)
Q Consensus 61 ~~~v~~-~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y 139 (204)
..+.+- ..+++-|.-.+....+. .....+-.+++.|+ .+..+++.+.+.|++.+.+.....+..++.+-
T Consensus 29 ~v~~Vnp~~~~i~G~~~y~sl~e~-p~~iDlavv~~~~~---------~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a 98 (116)
T PF13380_consen 29 EVYPVNPKGGEILGIKCYPSLAEI-PEPIDLAVVCVPPD---------KVPEIVDEAAALGVKAVWLQPGAESEELIEAA 98 (116)
T ss_dssp EEEEESTTCSEETTEE-BSSGGGC-SST-SEEEE-S-HH---------HHHHHHHHHHHHT-SEEEE-TTS--HHHHHHH
T ss_pred EEEEECCCceEECcEEeeccccCC-CCCCCEEEEEcCHH---------HHHHHHHHHHHcCCCEEEEEcchHHHHHHHHH
Confidence 344443 34556665544333321 11233554555554 46667777777799999998888999999999
Q ss_pred HHCCCEEee
Q 028771 140 GRLGFIRAK 148 (204)
Q Consensus 140 ~k~GF~~~~ 148 (204)
++.|....+
T Consensus 99 ~~~gi~vig 107 (116)
T PF13380_consen 99 REAGIRVIG 107 (116)
T ss_dssp HHTT-EEEE
T ss_pred HHcCCEEEe
Confidence 999999876
No 189
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=34.90 E-value=16 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 120 GCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
|+..|.+.+... ..+..+++++||+.+++..
T Consensus 9 G~dFvEFa~~~~-~~l~~~~~~lGF~~~a~hr 39 (139)
T PF14696_consen 9 GFDFVEFAVPDA-QALAQLFTALGFQPVARHR 39 (139)
T ss_dssp EEEEEEEE-SST-TSCHHHHCCCCEEEECCEC
T ss_pred CeEEEEEecCCH-HHHHHHHHHhCcceEEecC
Confidence 677788766553 4577888999999998753
No 190
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=34.79 E-value=43 Score=21.78 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeEEe
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKRLF 151 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~~ 151 (204)
+.++.+.|..- .++..||++ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 35566555432 479999986 9999987765
No 191
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=34.51 E-value=28 Score=23.99 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=14.2
Q ss_pred HHHHHHHHHCCCEEeeE
Q 028771 133 KGALALYGRLGFIRAKR 149 (204)
Q Consensus 133 ~~a~~~y~k~GF~~~~~ 149 (204)
.++.+||.++||+.-..
T Consensus 15 ~~S~~Fy~alGfk~Npq 31 (133)
T COG3607 15 EASKAFYTALGFKFNPQ 31 (133)
T ss_pred HHHHHHHHHhCcccCCC
Confidence 67999999999997543
No 192
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=34.48 E-value=49 Score=20.97 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHHHHHHH-CCCEEeeEEe
Q 028771 133 KGALALYGR-LGFIRAKRLF 151 (204)
Q Consensus 133 ~~a~~~y~k-~GF~~~~~~~ 151 (204)
.+|.+||+. +||+......
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~ 26 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDP 26 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHHhcCCEEEEeCC
Confidence 579999997 9999988533
No 193
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.69 E-value=65 Score=20.87 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
++.++.+.+. +=.++.+||++ +||+.....
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeeccc
Confidence 4566766664 33679999988 999986543
No 194
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=32.65 E-value=1.9e+02 Score=20.70 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEE-----------ecCCHHHHHHHHHCCCEEeeE
Q 028771 105 ATELVTRSIKVMMESGCEEVTLEA-----------EVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 105 g~~ll~~~~~~~~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~~~ 149 (204)
+..+.+.+.+.+.+.|++.+.+.+ .+....|++-..+.|++....
T Consensus 74 Aq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I 129 (149)
T PTZ00129 74 AMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRI 129 (149)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 445566677778888999999988 466688999999999997664
No 195
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=31.88 E-value=91 Score=25.90 Aligned_cols=27 Identities=7% Similarity=-0.109 Sum_probs=16.1
Q ss_pred CCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 120 GCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
|++.+.|. .|+.-+.-.+.+|.+.+.+
T Consensus 338 GV~kirLL---nNP~K~~~L~~~GIeV~~~ 364 (369)
T PRK12485 338 GVGKLRHL---GPPLKYAGLTGYDLEVVES 364 (369)
T ss_pred CCCEEEEC---CCchhhhhhhhCCcEEEEE
Confidence 77777776 2434444456677776654
No 196
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=31.51 E-value=52 Score=24.26 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCC-HHHHHHHHH-CCCEEeeEE
Q 028771 120 GCEEVTLEAEVTN-KGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 120 g~~~i~l~~~~~N-~~a~~~y~k-~GF~~~~~~ 150 (204)
++.++.+.|...+ ..+..||++ +||+.....
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~ 35 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSF 35 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEE
Confidence 3567777766333 579999965 999986653
No 197
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=30.92 E-value=2.1e+02 Score=20.81 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=54.1
Q ss_pred eEEEEEECCeEEEEEEEEecCCCCCceEEEEEEEeCcccc----cCCHHHHHHHHHHHHHHHcCCcEEEEEEecC-----
Q 028771 61 LSFLAFHKGKCVGTVVCKMGEHRSTFRGYIAMLVVIKPYR----GRGIATELVTRSIKVMMESGCEEVTLEAEVT----- 131 (204)
Q Consensus 61 ~~~v~~~~g~ivG~~~~~~~~~~~~~~~~i~~l~V~p~~R----g~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~----- 131 (204)
..+.++.+++.++.+-+........+. +.-+-+.|.+| +.++-..|+..+..++... .+++++=..+
T Consensus 19 ~n~~l~~~~~~l~~~kvF~GR~yY~pW--~EiFni~p~~~~~~~~s~~E~~l~~~~~~~l~pg--~~lfVeY~~D~eT~~ 94 (170)
T PF06557_consen 19 VNFELYLGGRHLCHVKVFFGRPYYRPW--AEIFNINPWLRVVFFGSPLEDELYKLFSRYLEPG--GRLFVEYVEDRETRR 94 (170)
T ss_dssp EEEEEEETTEEEEEEEEE--BTTB--E--EEEE---GGGHHHHTTSHHHHHHHHHHHTT------SEEEEE-TT-HHHHH
T ss_pred eeEEEEECCeeEEEEEEecCCCCCcch--heeecccchhcccccCChHHHHHHHHHHHHhhhc--CeEEEEEecCHHHHH
Confidence 455666789999999887655443444 44457999999 9999999888887776543 4455543322
Q ss_pred ---------CHHHHHHHHHCCCEEeeEEeecccCC----cceeeEeccCC
Q 028771 132 ---------NKGALALYGRLGFIRAKRLFRYYLNG----VDAFRLKLLFP 168 (204)
Q Consensus 132 ---------N~~a~~~y~k~GF~~~~~~~~~~~~~----~~~~~m~~~l~ 168 (204)
.++.-....++||+.... .|++.| -..+.-.|.++
T Consensus 95 ~L~~G~pp~~TrLG~~Ll~~GFtwfKd--WYfPEG~~EGg~KlQa~Kpl~ 142 (170)
T PF06557_consen 95 QLQRGVPPAETRLGFSLLKAGFTWFKD--WYFPEGGMEGGPKLQAEKPLN 142 (170)
T ss_dssp HHHTT--GGGSHHHHHHHTTT--EEEE--EE--TTTSTT-EEEEEE--SS
T ss_pred HHHcCCCcccchhHHHHHhCCcEEEee--eeccCccccCCceeeeecCCC
Confidence 233344567899998763 234333 35555566654
No 198
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=30.31 E-value=57 Score=21.43 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=19.3
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
+.++.+.|.. =.+|..||++ +||+....
T Consensus 5 l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 5 PGHVQLRVLD-LEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred EeEEEEEeCC-HHHHHHHHHhccCCEeeee
Confidence 4556665543 2579999975 99987654
No 199
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.28 E-value=97 Score=19.98 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCcEEEEEEecCCHHHHHHHH-HCCCEEeeE
Q 028771 120 GCEEVTLEAEVTNKGALALYG-RLGFIRAKR 149 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~-k~GF~~~~~ 149 (204)
++.++.+.|. +=.+|..||+ .+||.....
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEeee
Confidence 4567777774 3357999997 599997643
No 200
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=29.83 E-value=1.2e+02 Score=22.42 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=33.5
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEE
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRL 150 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~ 150 (204)
..+++|-.|+|.++|..+ |++.+.|.+.+ ..-+.-...+|-+.++..
T Consensus 122 ~~~d~R~yGiGAQIL~dL-------Gv~~mrLLs~~--~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 122 FPADARDYGLAAQILRDL-------GIKSVRLLTNN--PDKIDALEGYGIEVVERV 168 (193)
T ss_pred CCccccchHHHHHHHHHc-------CCCeEEECCCC--HHHHHHHHhCCCEEEEEe
Confidence 355699999999998876 89989887763 333444456677776543
No 201
>PRK10291 glyoxalase I; Provisional
Probab=29.79 E-value=63 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=13.9
Q ss_pred HHHHHHHHH-CCCEEeeE
Q 028771 133 KGALALYGR-LGFIRAKR 149 (204)
Q Consensus 133 ~~a~~~y~k-~GF~~~~~ 149 (204)
.+|+.||++ +||+....
T Consensus 8 e~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHhccCCEEEEe
Confidence 579999976 99997654
No 202
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=29.66 E-value=1e+02 Score=16.93 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=12.6
Q ss_pred CCeEEEEE-ECCeEEEEEEE
Q 028771 59 PHLSFLAF-HKGKCVGTVVC 77 (204)
Q Consensus 59 ~~~~~v~~-~~g~ivG~~~~ 77 (204)
+...+.+. ++|+++|.+..
T Consensus 29 ~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 29 GISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp TSSEEEEESTTSBEEEEEEH
T ss_pred CCcEEEEEecCCEEEEEEEH
Confidence 33444444 78999999764
No 203
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=29.38 E-value=74 Score=22.00 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=20.9
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
.+.++.+.|.. =.++.+||+. +||+...+.
T Consensus 6 ~l~Hv~l~v~D-le~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 6 RLDHCLLTGED-IAETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eeCEEEEecCC-HHHHHHHHHHhcCCEEEEEE
Confidence 34566666653 2579999976 999976553
No 204
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=28.95 E-value=1.3e+02 Score=19.32 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=14.9
Q ss_pred CHHHHHHHH-HCCCEEeeEE
Q 028771 132 NKGALALYG-RLGFIRAKRL 150 (204)
Q Consensus 132 N~~a~~~y~-k~GF~~~~~~ 150 (204)
=.+|.+||. .+||+.....
T Consensus 12 ~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 12 AAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred HHHHHHHHHHhhCCEEEEEE
Confidence 367999997 5999987653
No 205
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=28.70 E-value=1.2e+02 Score=24.07 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCC-----------HHHHHHHHHCCCEEee
Q 028771 106 TELVTRSIKVMMESGCEEVTLEAEVTN-----------KGALALYGRLGFIRAK 148 (204)
Q Consensus 106 ~~ll~~~~~~~~~~g~~~i~l~~~~~N-----------~~a~~~y~k~GF~~~~ 148 (204)
..-|..++++++++|+. |.|.+.... ..+.+.|+++|-.-+.
T Consensus 72 ~~dl~elv~Ya~~KgVg-i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvK 124 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVG-IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVK 124 (273)
T ss_dssp T--HHHHHHHHHHTT-E-EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEE
T ss_pred ccCHHHHHHHHHHcCCC-EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEe
Confidence 35577788888877755 334444333 5567777787766544
No 206
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=28.44 E-value=1e+02 Score=19.76 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=19.2
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 122 EEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 122 ~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
.++.+.+. +=.++.+||++ +||+.....
T Consensus 4 ~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 4 AYAELEVP-DLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred eEEEEecC-CHHHHHHHHHhccCcEEEeec
Confidence 34544433 23679999998 999987654
No 207
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=27.60 E-value=1.1e+02 Score=20.66 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=20.7
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
++.++.+.|. +-.++..||+. +||....+
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 4566777664 34679999976 99987544
No 208
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=27.40 E-value=88 Score=20.03 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeEEe
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKRLF 151 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~~ 151 (204)
+.++.+.|.. =.+|+.||+. +||+......
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 3455565554 3579999987 9999977643
No 209
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=26.84 E-value=1.6e+02 Score=22.57 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHc--CCcEEEEEEecCCHHHHHHHHHCCCEEeeE
Q 028771 103 GIATELVTRSIKVMMES--GCEEVTLEAEVTNKGALALYGRLGFIRAKR 149 (204)
Q Consensus 103 Gig~~ll~~~~~~~~~~--g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~ 149 (204)
|.|..++..+++...+. ++.++.|--...-..-+.|..+.+|....+
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeee
Confidence 99999999999998876 555555532222244567789999998775
No 210
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=26.60 E-value=72 Score=20.26 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.9
Q ss_pred HHHHHHHHH-CCCEEeeEE
Q 028771 133 KGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 133 ~~a~~~y~k-~GF~~~~~~ 150 (204)
.++..||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 579999998 999986653
No 211
>PRK14968 putative methyltransferase; Provisional
Probab=26.60 E-value=2e+02 Score=20.45 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEeeEEe
Q 028771 108 LVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLF 151 (204)
Q Consensus 108 ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~ 151 (204)
+++.+...++..|.-.+.......+.....+.++.||+......
T Consensus 130 ~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred HHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeee
Confidence 44444444444342222222223456688999999998765433
No 212
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=26.29 E-value=1.6e+02 Score=21.77 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHHHHcCCcEEEEEEecCC--HHHHHHHHHCCCEEeeE
Q 028771 101 GRGIATELVTRSIKVMMESGCEEVTLEAEVTN--KGALALYGRLGFIRAKR 149 (204)
Q Consensus 101 g~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~N--~~a~~~y~k~GF~~~~~ 149 (204)
+.-.-..+++.+++.+++.|.+.+.+.-.+.. ..+...++..||.....
T Consensus 17 ~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 33444568999999999998876666544332 46888999999998643
No 213
>PRK11478 putative lyase; Provisional
Probab=25.93 E-value=85 Score=20.71 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=19.0
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEee
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAK 148 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~ 148 (204)
++.++.+.|. +=.+|.+||++ +||+...
T Consensus 6 ~i~hv~l~v~-D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 6 QVHHIAIIAT-DYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred eecEEEEEcC-CHHHHHHHHHHHhCCEecc
Confidence 3456666553 33579999965 9999753
No 214
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.68 E-value=1.3e+02 Score=19.67 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCcEEEEEEecCCHHHHHHHHHC----CCEEeeE
Q 028771 120 GCEEVTLEAEVTNKGALALYGRL----GFIRAKR 149 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k~----GF~~~~~ 149 (204)
|+.++.+.+. +=.++..||++. ||+....
T Consensus 1 ~i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 1 GIHHVELTVR-DLERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred CCceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEe
Confidence 3456666663 235799999885 9998765
No 215
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.40 E-value=78 Score=20.70 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=20.2
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
+.++.+.|..- .++..||.. +||+.....
T Consensus 3 i~hi~l~v~d~-~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 3 IGAVTLRVADL-ERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEEECCH-HHHHHHHHhccCcEEEEcC
Confidence 34566655432 578999986 999997763
No 216
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.40 E-value=89 Score=20.25 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=18.5
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 122 EEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 122 ~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
.++.+.|.. =.++..||++ +||+....
T Consensus 3 ~Hi~l~v~d-l~~s~~FY~~~lg~~~~~~ 30 (125)
T cd07241 3 EHVAIWTKD-LERMKAFYVTYFGATSNEK 30 (125)
T ss_pred eEEEEEecC-HHHHHHHHHHHhCCEeece
Confidence 456665542 2579999987 89987543
No 217
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=25.33 E-value=1.1e+02 Score=19.87 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=20.8
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
++.++.+.+.. =.++..||++ +||+.....
T Consensus 3 ~i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~~ 33 (120)
T cd08362 3 ALRGVGLGVPD-LAAAAAFYREVWGLSVVAED 33 (120)
T ss_pred eeeEEEEecCC-HHHHHHHHHhCcCcEEEEec
Confidence 44566665542 2679999987 999986543
No 218
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.02 E-value=1.3e+02 Score=19.52 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=16.3
Q ss_pred EEEEEecCCHHHHHHHHH-CCCEEee
Q 028771 124 VTLEAEVTNKGALALYGR-LGFIRAK 148 (204)
Q Consensus 124 i~l~~~~~N~~a~~~y~k-~GF~~~~ 148 (204)
+.+.|. +=.++.+||++ +||+...
T Consensus 4 ~~l~v~-D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 4 TIIYVE-DVEKTLEFYERAFGFERRF 28 (125)
T ss_pred EEEEEc-CHHHHHHHHHHhhCCeEEe
Confidence 444443 22579999987 8998754
No 219
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=24.78 E-value=75 Score=20.90 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=18.7
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
+..+.+.|..- .+|.+||+. +||+....
T Consensus 3 l~~v~l~v~Dl-~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 3 LGYLGVESSDL-DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred ccEEEEEeCCH-HHHHHHHHhccCceeccC
Confidence 34566655432 479999976 89987543
No 220
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=24.56 E-value=2.3e+02 Score=20.50 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=20.1
Q ss_pred EEEEEEe-cCCHHH-HHHHHHCCCEEeeEEe
Q 028771 123 EVTLEAE-VTNKGA-LALYGRLGFIRAKRLF 151 (204)
Q Consensus 123 ~i~l~~~-~~N~~a-~~~y~k~GF~~~~~~~ 151 (204)
.+.+.|. .....+ ..++++.||+......
T Consensus 47 ~lflWvTn~~~~~~~~~l~~~WGf~~~~~~~ 77 (176)
T PF05063_consen 47 LLFLWVTNSQLPEAKLELFPAWGFEYVTEWV 77 (176)
T ss_pred EEEEEeccchhhHHHHHHHHhCCCEEEEEEE
Confidence 3444443 344567 8999999999988743
No 221
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=24.43 E-value=1.4e+02 Score=19.22 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 123 EVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 123 ~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
++.+.+. +=.+|.+||+. +||+....
T Consensus 3 hv~i~v~-d~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 3 HTMLRVK-DLEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred eEEEEec-CcHHHHHHHHhccCCeEEEE
Confidence 4555553 33579999976 69998764
No 222
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=24.40 E-value=2.1e+02 Score=18.56 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=10.0
Q ss_pred eEEEEEECCeEEEEE
Q 028771 61 LSFLAFHKGKCVGTV 75 (204)
Q Consensus 61 ~~~v~~~~g~ivG~~ 75 (204)
++=++.-+|++||-+
T Consensus 67 fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 67 FYPLVVINDEIVAEG 81 (93)
T ss_dssp -SSEEEETTEEEEES
T ss_pred ccceEEECCEEEecC
Confidence 444566789999865
No 223
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=24.18 E-value=1.1e+02 Score=20.37 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=18.9
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 122 EEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 122 ~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
.++.+.+.. =.++..||++ +||+.....
T Consensus 3 ~hv~l~v~D-~~~s~~FY~~~lG~~~~~~~ 31 (134)
T cd08348 3 SHVVLYVRD-LEAMVRFYRDVLGFTVTDRG 31 (134)
T ss_pred eEEEEEecC-HHHHHHHHHHhcCCEEEeec
Confidence 445554432 2579999986 999986553
No 224
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.16 E-value=95 Score=24.22 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=31.5
Q ss_pred cccccCCHHHHHHHHHHHHHHHcCCcEEEEEEec-CC
Q 028771 97 KPYRGRGIATELVTRSIKVMMESGCEEVTLEAEV-TN 132 (204)
Q Consensus 97 p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~-~N 132 (204)
+...|.--|..-+..+++++.+.|++.+.+.+.+ +|
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN 77 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTEN 77 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhh
Confidence 4567888999999999999999999999998876 55
No 225
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=23.87 E-value=35 Score=20.43 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=9.8
Q ss_pred CcccccCCHHHHH
Q 028771 96 IKPYRGRGIATEL 108 (204)
Q Consensus 96 ~p~~Rg~Gig~~l 108 (204)
+|+||++.|++.|
T Consensus 53 hPqYrn~~iA~LL 65 (67)
T PF03376_consen 53 HPQYRNQQIAALL 65 (67)
T ss_pred CchhcCHHHHHHh
Confidence 6888888887654
No 226
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.84 E-value=82 Score=20.07 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.0
Q ss_pred HHHHHHHHH-CCCEEeeEE
Q 028771 133 KGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 133 ~~a~~~y~k-~GF~~~~~~ 150 (204)
.++.+||++ +||+...+.
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 579999987 999987654
No 227
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=23.73 E-value=1.6e+02 Score=21.37 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=28.0
Q ss_pred CCcEEEEEEecCCHHHHHHHHHCCCEEeeEEeec
Q 028771 120 GCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRY 153 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k~GF~~~~~~~~~ 153 (204)
++..+.+-+...|.....+.+..||+.......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 36 (194)
T PRK10975 3 AFSLVQAKVAASDTALLDALQQLGFQLVEGEVDF 36 (194)
T ss_pred ccceEEEEechhhhHHHHHHHhcCCEeeeeEEEE
Confidence 5677888888899889999999999987765544
No 228
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=23.71 E-value=1.5e+02 Score=20.76 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
++.++.+.|. +=.+++.||+. +||+...+
T Consensus 9 ~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 9 GLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 5677777665 34679999976 99997654
No 229
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=23.70 E-value=1.2e+02 Score=23.37 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=30.2
Q ss_pred cccccCCHHHHHHHHHHHHHHHcCCcEEEEEEec
Q 028771 97 KPYRGRGIATELVTRSIKVMMESGCEEVTLEAEV 130 (204)
Q Consensus 97 p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 130 (204)
|...|.--|..-+..+++++.+.|++.+.+.+.+
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFS 53 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYAFS 53 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 6667888999999999999999999999998763
No 230
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=23.42 E-value=98 Score=21.87 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=20.5
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEeeEE
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAKRL 150 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~~ 150 (204)
|+.++.+.|.. =.++..||++ +||+...+.
T Consensus 1 gl~HI~i~V~D-le~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 1 GLHGVTLTVRD-PEATAAFLTDVLGFREVGEE 31 (157)
T ss_pred CcccEEEEeCC-HHHHHHHHHHhcCCEEEeee
Confidence 45566665543 2579999965 799987654
No 231
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.40 E-value=1.2e+02 Score=23.37 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=30.5
Q ss_pred CcccccCCHHHHHHHHHHHHHHHcCCcEEEEEEec
Q 028771 96 IKPYRGRGIATELVTRSIKVMMESGCEEVTLEAEV 130 (204)
Q Consensus 96 ~p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 130 (204)
.|...|.--|..-+..+++++.+.|++.+.+.+.+
T Consensus 26 l~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS 60 (230)
T PRK14837 26 LSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60 (230)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 35667888899999999999999999999998763
No 232
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=22.95 E-value=89 Score=20.37 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=19.5
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 122 EEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 122 ~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
.++.+.|. +=.++.+||++ +||+....
T Consensus 2 ~hv~l~v~-d~~~~~~fy~~~lG~~~~~~ 29 (128)
T cd07249 2 DHIGIAVP-DLEAAIKFYRDVLGVGPWEE 29 (128)
T ss_pred cEEEEEeC-CHHHHHHHHHHhhCCCCccc
Confidence 45666664 23579999987 99998654
No 233
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=22.87 E-value=1e+02 Score=21.28 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=20.4
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
++.++.+.|.. =.+|..||+. +||+...+
T Consensus 17 ~i~hv~l~v~D-l~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 17 RLLHTMLRVGD-LDKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred eEEEEEEEecC-HHHHHHHHHHhcCCEEEEE
Confidence 45666666653 2579999975 99987553
No 234
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=1.3e+02 Score=20.86 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=27.9
Q ss_pred eCcccccCCHHHHHHHHHHHHHHHc-CCcEEEEEEecCC
Q 028771 95 VIKPYRGRGIATELVTRSIKVMMES-GCEEVTLEAEVTN 132 (204)
Q Consensus 95 V~p~~Rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N 132 (204)
-..-|+|+|+....++.+-+.+... ....|.+-..+++
T Consensus 12 Cmq~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~DD 50 (135)
T COG3543 12 CMQGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPDD 50 (135)
T ss_pred eeeecccccCCHHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 3457999999999999998888775 3344666555554
No 235
>PLN02300 lactoylglutathione lyase
Probab=22.34 E-value=73 Score=25.05 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=20.6
Q ss_pred CCcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 120 GCEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 120 g~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
++.++.+.|.. =.+|++||+. +||+...+
T Consensus 24 ~l~Hv~l~V~D-le~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 24 RMLHVVYRVGD-LDRTIKFYTECLGMKLLRK 53 (286)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEEEe
Confidence 45666666543 2579999976 89998654
No 236
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=22.14 E-value=1.5e+02 Score=23.08 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=34.7
Q ss_pred EEEEEEEeCcccccCCHHHHHHHHHHHHHH-HcCCcEEEEEEec
Q 028771 88 GYIAMLVVIKPYRGRGIATELVTRSIKVMM-ESGCEEVTLEAEV 130 (204)
Q Consensus 88 ~~i~~l~V~p~~Rg~Gig~~ll~~~~~~~~-~~g~~~i~l~~~~ 130 (204)
-|++..-|-|.|-..|++++.|+....++- +.|-+-|.+....
T Consensus 144 tYlgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaIS 187 (259)
T COG0623 144 TYLGSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAIS 187 (259)
T ss_pred EeccceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeec
Confidence 456667899999999999999999999965 4477777776553
No 237
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.13 E-value=2e+02 Score=18.66 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=16.4
Q ss_pred EEEEEecCCHHHHHHHHH-CCCEEee
Q 028771 124 VTLEAEVTNKGALALYGR-LGFIRAK 148 (204)
Q Consensus 124 i~l~~~~~N~~a~~~y~k-~GF~~~~ 148 (204)
+.+.|. +-.+|.+||+. +||+...
T Consensus 6 ~~l~v~-D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 6 PLLVVK-DIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEC-CHHHHHHHHHHhcCCEEee
Confidence 344442 33689999985 9998753
No 238
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.09 E-value=1.4e+02 Score=19.39 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=18.2
Q ss_pred EEEEEEecCCHHHHHHHHH----CCCEEeeEE
Q 028771 123 EVTLEAEVTNKGALALYGR----LGFIRAKRL 150 (204)
Q Consensus 123 ~i~l~~~~~N~~a~~~y~k----~GF~~~~~~ 150 (204)
++.+.|. +=.+|..||++ +||......
T Consensus 3 hv~l~v~-d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 3 HVTLGVN-DLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEEecC-cHHHHHHHHHHHHhhcCceEEeec
Confidence 4555542 22679999998 599987553
No 239
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=22.08 E-value=96 Score=21.91 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=19.1
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEee
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAK 148 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~ 148 (204)
+.++.+.|.. =.+|++||+. +||+...
T Consensus 4 l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 4 LDHFNLRVPD-VDAGLAYYRDELGFRVSE 31 (161)
T ss_pred EEEEEEecCC-HHHHHHHHHhccCCEEEE
Confidence 4566666542 3679999987 9998754
No 240
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.81 E-value=1.9e+02 Score=18.85 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=19.6
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
+.++.+.|. +=..+..||++ +||+....
T Consensus 2 i~hv~l~v~-d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVS-DLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEEC-CHHHHHHHHHHhcCCEEEEe
Confidence 455666553 22579999976 99998664
No 241
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=21.47 E-value=40 Score=20.88 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=8.7
Q ss_pred CCCCCCCcCC
Q 028771 194 PEECPEHHHI 203 (204)
Q Consensus 194 ~~~~~~~~~~ 203 (204)
...|||..|.
T Consensus 37 ~i~CPC~~C~ 46 (77)
T PF13963_consen 37 MIRCPCRKCK 46 (77)
T ss_pred ceECCchhhc
Confidence 7899999984
No 242
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=21.12 E-value=1.4e+02 Score=19.71 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=18.0
Q ss_pred cEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 122 EEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 122 ~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
..+.+.|. +=.+|.+||++ +||+...+
T Consensus 8 ~~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 8 AYVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred eEEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 44555443 22579999977 89997544
No 243
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.94 E-value=1.1e+02 Score=19.94 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=14.9
Q ss_pred HHHHHHHH-HCCCEEeeEE
Q 028771 133 KGALALYG-RLGFIRAKRL 150 (204)
Q Consensus 133 ~~a~~~y~-k~GF~~~~~~ 150 (204)
.+|..||+ .+||+.....
T Consensus 11 ~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 11 AAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred HHHHHHHHHhcCCEEEEEE
Confidence 68999997 8999987643
No 244
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.89 E-value=1.3e+02 Score=23.33 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHc-CCcEEEEEEecCCHHHHHHHHHCCCEE
Q 028771 102 RGIATELVTRSIKVMMES-GCEEVTLEAEVTNKGALALYGRLGFIR 146 (204)
Q Consensus 102 ~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~N~~a~~~y~k~GF~~ 146 (204)
-|+|+.-+.+-+.++.++ |.+.+.++.++.| +.+|.=.+.|..
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~dpqN--~Lrlhfg~~~~~ 54 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDLDPQN--LLRLHFGLPLDD 54 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH--HHHHhcCCCCcc
Confidence 499999999999998876 8888888888887 666655555543
No 245
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=20.53 E-value=1.2e+02 Score=19.81 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=19.5
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
+.++.+.|.. =.+|.+||+. +||+...+
T Consensus 7 i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 7 LAHVELLTPK-PEESLWFFTDVLGLEETGR 35 (121)
T ss_pred eeEEEEEeCC-HHHHHHHHHhCcCCEEEee
Confidence 4556555542 2679999977 79998765
No 246
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=20.48 E-value=3.5e+02 Score=19.78 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=24.6
Q ss_pred HHHHHHhhcC---CCchHHHHHHHHhhCCCeEEEEEECCeEEEEEE
Q 028771 34 IMNLVDQELS---EPYSIFTYRYFVYLWPHLSFLAFHKGKCVGTVV 76 (204)
Q Consensus 34 i~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~g~ivG~~~ 76 (204)
+.+++.+.|+ ...+.+...+.+..++ ..++.++|++||.+.
T Consensus 132 vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~G~~vGIIT 175 (187)
T COG3620 132 VREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVENGKVVGIIT 175 (187)
T ss_pred HHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEeCCceEEEEe
Confidence 4455555554 2345566666665544 344449999999874
No 247
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.33 E-value=1.3e+02 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=31.4
Q ss_pred cccccCCHHHHHHHHHHHHHHHcCCcEEEEEEe-cCC
Q 028771 97 KPYRGRGIATELVTRSIKVMMESGCEEVTLEAE-VTN 132 (204)
Q Consensus 97 p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~-~~N 132 (204)
+...|.--|...+..+++++.+.|++.+.+.+. .+|
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN 71 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTEN 71 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchh
Confidence 566788889999999999999999999999887 455
No 248
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=20.31 E-value=1.5e+02 Score=22.70 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=29.9
Q ss_pred cccccCCHHHHHHHHHHHHHHHcCCcEEEEEEec
Q 028771 97 KPYRGRGIATELVTRSIKVMMESGCEEVTLEAEV 130 (204)
Q Consensus 97 p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 130 (204)
|...|.--|..-+..+++++.+.|++.+.+.+.+
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS 54 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFS 54 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5667888899999999999999999999998763
No 249
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=20.21 E-value=2.3e+02 Score=17.49 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEecCCHHHHHHHHHCCCEEe
Q 028771 104 IATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRA 147 (204)
Q Consensus 104 ig~~ll~~~~~~~~~~g~~~i~l~~~~~N~~a~~~y~k~GF~~~ 147 (204)
-|-.++..+.+.+.+.|.+ +. +..-+.....+++..|+...
T Consensus 54 ~g~~~L~~l~~~~~~~g~~-v~--i~~~~~~~~~~l~~~gl~~~ 94 (99)
T cd07043 54 SGLGVLLGAYKRARAAGGR-LV--LVNVSPAVRRVLELTGLDRL 94 (99)
T ss_pred hhHHHHHHHHHHHHHcCCe-EE--EEcCCHHHHHHHHHhCccee
Confidence 3555677777777777754 33 33334579999999998753
No 250
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=20.14 E-value=1.1e+02 Score=23.20 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=28.9
Q ss_pred cccccCCHHHHHHHHHHHHHHHcCCcEEEEEEec-CC
Q 028771 97 KPYRGRGIATELVTRSIKVMMESGCEEVTLEAEV-TN 132 (204)
Q Consensus 97 p~~Rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~-~N 132 (204)
|...|..-|..-+..+++++.+.|++.+.+.+.+ +|
T Consensus 15 ~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN 51 (223)
T PF01255_consen 15 PRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTEN 51 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchh
Confidence 3456777888999999999999999999998865 44
No 251
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=20.02 E-value=1.3e+02 Score=19.49 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=19.4
Q ss_pred CcEEEEEEecCCHHHHHHHHH-CCCEEeeE
Q 028771 121 CEEVTLEAEVTNKGALALYGR-LGFIRAKR 149 (204)
Q Consensus 121 ~~~i~l~~~~~N~~a~~~y~k-~GF~~~~~ 149 (204)
+.++.+.|.. =.++.+||++ +||+....
T Consensus 5 i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 5 LGHVELRVTD-LEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeEEEEEcCC-HHHHHHHHHhccCCEEecc
Confidence 4556665532 3579999987 99997644
Done!