Query 028774
Match_columns 204
No_of_seqs 371 out of 1104
Neff 12.4
Searched_HMMs 46136
Date Fri Mar 29 16:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02824 hydrolase, alpha/beta 100.0 7.2E-30 1.6E-34 175.2 14.7 188 1-188 107-294 (294)
2 PLN02679 hydrolase, alpha/beta 99.9 2E-26 4.4E-31 161.6 15.3 189 1-189 160-358 (360)
3 PRK10349 carboxylesterase BioH 99.9 1.3E-25 2.9E-30 151.3 12.9 175 1-187 79-255 (256)
4 PLN02578 hydrolase 99.9 2.8E-24 6E-29 150.8 15.5 184 1-186 157-353 (354)
5 KOG1454 Predicted hydrolase/ac 99.9 1.6E-25 3.4E-30 153.6 6.1 69 121-189 256-325 (326)
6 TIGR01738 bioH putative pimelo 99.9 1.5E-23 3.3E-28 140.3 12.9 65 121-185 181-245 (245)
7 PRK03592 haloalkane dehalogena 99.9 6.3E-24 1.4E-28 146.0 11.2 182 1-190 98-291 (295)
8 PLN02965 Probable pheophorbida 99.9 8.4E-24 1.8E-28 142.4 11.2 67 123-189 188-254 (255)
9 TIGR03343 biphenyl_bphD 2-hydr 99.9 1.6E-23 3.6E-28 143.1 12.2 65 122-186 217-281 (282)
10 KOG4409 Predicted hydrolase/ac 99.9 1.8E-23 3.8E-28 139.4 11.0 187 1-188 165-364 (365)
11 TIGR02240 PHA_depoly_arom poly 99.9 2.1E-23 4.5E-28 142.1 10.4 69 122-191 201-269 (276)
12 PRK07581 hypothetical protein; 99.9 5.5E-23 1.2E-27 143.8 12.2 70 120-189 267-337 (339)
13 PRK06489 hypothetical protein; 99.9 5.7E-23 1.2E-27 144.5 11.6 71 119-190 283-359 (360)
14 TIGR03056 bchO_mg_che_rel puta 99.9 2.7E-22 5.8E-27 136.9 12.4 65 122-186 214-278 (278)
15 PRK08775 homoserine O-acetyltr 99.9 1.9E-22 4.2E-27 141.1 11.4 68 123-190 272-341 (343)
16 KOG4178 Soluble epoxide hydrol 99.9 1.1E-22 2.4E-27 135.0 9.2 187 1-189 118-321 (322)
17 PLN03087 BODYGUARD 1 domain co 99.9 3.7E-23 8E-28 147.8 6.9 64 125-188 415-479 (481)
18 PRK03204 haloalkane dehalogena 99.9 5.8E-22 1.3E-26 135.3 11.8 59 128-186 227-286 (286)
19 PRK06765 homoserine O-acetyltr 99.9 3.3E-22 7.1E-27 140.5 10.1 68 120-187 315-387 (389)
20 PRK10673 acyl-CoA esterase; Pr 99.9 5E-22 1.1E-26 134.0 10.5 66 122-187 189-254 (255)
21 PLN02385 hydrolase; alpha/beta 99.9 3.4E-22 7.3E-27 140.2 8.8 69 122-190 273-347 (349)
22 TIGR01392 homoserO_Ac_trn homo 99.9 5.8E-22 1.3E-26 139.1 9.4 66 121-186 281-351 (351)
23 PLN02894 hydrolase, alpha/beta 99.9 5E-21 1.1E-25 135.9 13.8 71 121-192 318-389 (402)
24 PRK00175 metX homoserine O-ace 99.9 5.5E-22 1.2E-26 140.2 8.9 71 120-190 301-376 (379)
25 PRK00870 haloalkane dehalogena 99.9 4.4E-22 9.6E-27 137.2 8.2 65 123-188 234-301 (302)
26 TIGR03611 RutD pyrimidine util 99.9 3.8E-21 8.3E-26 129.7 10.6 67 121-187 191-257 (257)
27 TIGR02427 protocat_pcaD 3-oxoa 99.9 2.5E-21 5.5E-26 129.9 8.5 66 121-186 186-251 (251)
28 PRK11126 2-succinyl-6-hydroxy- 99.9 1.9E-20 4.1E-25 125.4 12.3 62 120-187 180-241 (242)
29 TIGR03695 menH_SHCHC 2-succiny 99.9 2.2E-20 4.8E-25 125.3 12.6 64 122-186 188-251 (251)
30 PHA02857 monoglyceride lipase; 99.8 6.3E-21 1.4E-25 130.0 9.0 67 122-188 203-273 (276)
31 PLN02298 hydrolase, alpha/beta 99.8 5E-21 1.1E-25 133.5 8.4 72 122-193 245-322 (330)
32 PLN03084 alpha/beta hydrolase 99.8 1.1E-19 2.4E-24 127.6 14.9 62 125-187 322-383 (383)
33 KOG2382 Predicted alpha/beta h 99.8 1.5E-19 3.2E-24 120.3 10.6 65 125-189 250-314 (315)
34 TIGR01250 pro_imino_pep_2 prol 99.8 2E-19 4.4E-24 123.1 11.7 65 121-186 224-288 (288)
35 PRK14875 acetoin dehydrogenase 99.8 1.9E-19 4.2E-24 127.7 11.9 63 122-187 308-370 (371)
36 KOG2984 Predicted hydrolase [G 99.8 2.1E-20 4.6E-25 115.4 5.5 158 1-188 119-276 (277)
37 PLN02980 2-oxoglutarate decarb 99.8 1.3E-19 2.8E-24 146.6 11.2 73 121-194 1561-1645(1655)
38 PF12697 Abhydrolase_6: Alpha/ 99.8 3E-21 6.5E-26 127.7 1.5 59 122-180 170-228 (228)
39 PF00561 Abhydrolase_1: alpha/ 99.8 1.5E-21 3.2E-26 129.7 -0.1 61 122-182 169-229 (230)
40 PRK10749 lysophospholipase L2; 99.8 3.7E-20 8.1E-25 128.9 6.0 67 122-188 253-329 (330)
41 PLN02211 methyl indole-3-aceta 99.8 3.7E-19 8E-24 120.6 7.6 62 125-187 207-269 (273)
42 PLN02511 hydrolase 99.8 1.1E-18 2.3E-23 123.7 8.2 71 121-191 291-368 (388)
43 KOG1455 Lysophospholipase [Lip 99.8 6.1E-19 1.3E-23 115.8 5.5 170 1-188 134-312 (313)
44 COG2267 PldB Lysophospholipase 99.8 1.2E-17 2.7E-22 113.8 10.9 176 1-190 112-296 (298)
45 PLN02652 hydrolase; alpha/beta 99.7 4.4E-18 9.5E-23 120.3 5.5 70 121-190 317-389 (395)
46 PRK05077 frsA fermentation/res 99.7 3.1E-16 6.7E-21 111.8 12.4 61 125-188 352-412 (414)
47 TIGR01249 pro_imino_pep_1 prol 99.7 2.7E-17 5.8E-22 113.6 6.5 61 123-186 242-303 (306)
48 TIGR01607 PST-A Plasmodium sub 99.7 3.1E-16 6.6E-21 109.2 8.1 59 128-186 270-331 (332)
49 COG1647 Esterase/lipase [Gener 99.7 9E-16 2E-20 96.5 8.8 149 1-187 90-243 (243)
50 PRK10985 putative hydrolase; P 99.6 9.3E-16 2E-20 106.7 8.6 69 121-189 248-321 (324)
51 PRK07868 acyl-CoA synthetase; 99.6 1.5E-15 3.3E-20 119.3 10.2 70 123-192 292-365 (994)
52 TIGR01836 PHA_synth_III_C poly 99.6 7E-15 1.5E-19 103.4 12.2 64 123-187 281-349 (350)
53 TIGR01838 PHA_synth_I poly(R)- 99.6 1.6E-14 3.4E-19 105.0 13.0 55 121-175 408-462 (532)
54 PRK05855 short chain dehydroge 99.6 1.8E-15 4E-20 113.4 7.8 66 124-190 229-294 (582)
55 COG2021 MET2 Homoserine acetyl 99.6 8.6E-15 1.9E-19 99.4 10.0 181 1-187 152-367 (368)
56 PLN02872 triacylglycerol lipas 99.6 7.2E-14 1.6E-18 98.8 13.5 68 123-190 318-391 (395)
57 COG0596 MhpC Predicted hydrola 99.6 1.7E-14 3.8E-19 97.5 9.9 66 121-186 214-280 (282)
58 COG3208 GrsT Predicted thioest 99.6 3.6E-14 7.9E-19 91.2 9.5 63 125-188 173-236 (244)
59 TIGR03100 hydr1_PEP hydrolase, 99.6 2.3E-14 4.9E-19 97.5 8.0 64 123-187 202-274 (274)
60 KOG2931 Differentiation-relate 99.5 3.7E-12 7.9E-17 83.9 14.5 171 1-189 127-307 (326)
61 PF00326 Peptidase_S9: Prolyl 99.5 2E-13 4.3E-18 89.7 7.5 64 127-190 143-211 (213)
62 PRK11071 esterase YqiA; Provis 99.5 7.5E-13 1.6E-17 85.0 9.8 55 127-186 135-189 (190)
63 PF03096 Ndr: Ndr family; Int 99.5 2.8E-13 6E-18 89.8 7.6 170 1-188 104-279 (283)
64 PRK10566 esterase; Provisional 99.4 2.2E-12 4.8E-17 86.8 8.5 61 124-188 181-248 (249)
65 PRK13604 luxD acyl transferase 99.4 1.1E-12 2.3E-17 88.8 6.8 63 122-189 196-260 (307)
66 KOG1552 Predicted alpha/beta h 99.3 2.1E-12 4.6E-17 83.8 5.6 70 121-191 185-255 (258)
67 PF12695 Abhydrolase_5: Alpha/ 99.3 3.6E-12 7.9E-17 78.6 5.0 41 128-168 104-145 (145)
68 PRK11460 putative hydrolase; P 99.3 7.2E-12 1.6E-16 83.1 6.3 58 128-185 148-209 (232)
69 PLN02442 S-formylglutathione h 99.3 2E-11 4.4E-16 83.4 8.0 47 124-170 213-264 (283)
70 PF02230 Abhydrolase_2: Phosph 99.2 6.7E-11 1.5E-15 77.8 7.9 57 128-188 155-215 (216)
71 COG1506 DAP2 Dipeptidyl aminop 99.2 1.8E-10 4E-15 86.7 9.0 68 123-190 546-618 (620)
72 TIGR01839 PHA_synth_II poly(R) 99.2 2.5E-09 5.4E-14 78.0 13.7 168 1-170 293-483 (560)
73 KOG4667 Predicted esterase [Li 99.2 1E-10 2.2E-15 73.8 5.8 62 127-189 198-259 (269)
74 KOG2564 Predicted acetyltransf 99.1 3.3E-11 7.2E-16 79.0 1.4 67 124-193 266-332 (343)
75 TIGR01849 PHB_depoly_PhaZ poly 99.1 1.5E-09 3.3E-14 76.7 9.1 66 123-188 332-406 (406)
76 PF06821 Ser_hydrolase: Serine 99.1 3.4E-10 7.4E-15 71.2 5.3 47 127-174 113-159 (171)
77 TIGR02821 fghA_ester_D S-formy 99.1 1.9E-09 4.2E-14 73.6 9.3 30 1-30 143-172 (275)
78 PF01738 DLH: Dienelactone hyd 99.0 6.7E-10 1.4E-14 73.3 6.0 64 125-188 142-217 (218)
79 PF08840 BAAT_C: BAAT / Acyl-C 99.0 1.4E-10 3E-15 75.9 2.6 48 123-170 110-164 (213)
80 COG0429 Predicted hydrolase of 99.0 2.9E-09 6.3E-14 72.0 7.9 68 121-188 267-340 (345)
81 KOG4391 Predicted alpha/beta h 99.0 5E-10 1.1E-14 71.0 4.0 68 124-192 217-286 (300)
82 PF05448 AXE1: Acetyl xylan es 99.0 5.5E-09 1.2E-13 72.3 8.7 63 122-188 256-320 (320)
83 PF10230 DUF2305: Uncharacteri 98.9 5.8E-09 1.3E-13 70.6 7.9 157 1-168 89-264 (266)
84 COG3243 PhaC Poly(3-hydroxyalk 98.9 2.3E-08 5E-13 69.8 10.3 189 1-190 186-401 (445)
85 PF05728 UPF0227: Uncharacteri 98.9 1.7E-08 3.7E-13 64.3 9.0 53 128-185 134-186 (187)
86 PF06500 DUF1100: Alpha/beta h 98.9 2.9E-08 6.2E-13 69.9 10.1 142 1-188 266-409 (411)
87 COG2945 Predicted hydrolase of 98.8 2.9E-08 6.3E-13 61.9 7.4 60 125-186 146-205 (210)
88 PF08538 DUF1749: Protein of u 98.8 3E-09 6.4E-14 71.8 2.9 66 121-186 225-303 (303)
89 PF09752 DUF2048: Uncharacteri 98.8 9.6E-08 2.1E-12 65.7 9.8 57 129-186 290-347 (348)
90 COG0400 Predicted esterase [Ge 98.8 1.9E-08 4.1E-13 65.0 5.7 97 1-187 104-204 (207)
91 PF06342 DUF1057: Alpha/beta h 98.8 9E-08 1.9E-12 63.6 8.7 32 1-34 109-140 (297)
92 KOG1838 Alpha/beta hydrolase [ 98.8 1.8E-07 3.8E-12 65.7 10.0 69 120-188 314-388 (409)
93 PLN00021 chlorophyllase 98.7 9.5E-08 2.1E-12 66.2 8.4 30 1-30 131-165 (313)
94 PF08386 Abhydrolase_4: TAP-li 98.7 7.7E-08 1.7E-12 55.4 6.6 64 127-190 33-96 (103)
95 PF00975 Thioesterase: Thioest 98.7 1.2E-07 2.7E-12 63.1 7.9 57 128-185 168-229 (229)
96 COG3545 Predicted esterase of 98.7 1.6E-07 3.6E-12 57.8 7.1 61 126-187 115-178 (181)
97 COG3571 Predicted hydrolase of 98.6 2.1E-07 4.5E-12 56.5 6.6 66 122-188 136-211 (213)
98 TIGR01840 esterase_phb esteras 98.6 2.1E-07 4.5E-12 61.2 5.9 31 1-31 100-130 (212)
99 PF03959 FSH1: Serine hydrolas 98.6 5.4E-08 1.2E-12 63.8 3.0 49 124-173 157-206 (212)
100 COG0412 Dienelactone hydrolase 98.5 9.5E-07 2.1E-11 58.8 8.0 65 125-189 155-234 (236)
101 PRK10162 acetyl esterase; Prov 98.5 1.6E-06 3.5E-11 60.6 9.2 61 129-189 249-316 (318)
102 PRK05371 x-prolyl-dipeptidyl a 98.4 2.2E-06 4.7E-11 66.4 9.2 69 121-190 448-521 (767)
103 PF06028 DUF915: Alpha/beta hy 98.4 2.2E-06 4.9E-11 57.4 7.6 58 128-186 184-253 (255)
104 PRK10115 protease 2; Provision 98.4 4.6E-06 9.9E-11 64.1 10.1 31 1-31 529-559 (686)
105 PF11339 DUF3141: Protein of u 98.3 1.9E-05 4.2E-10 57.2 11.3 33 1-33 145-177 (581)
106 KOG1551 Uncharacterized conser 98.3 7.7E-06 1.7E-10 54.1 8.5 59 131-190 309-368 (371)
107 KOG2624 Triglyceride lipase-ch 98.3 3.5E-06 7.6E-11 60.0 7.5 69 121-189 325-399 (403)
108 COG4757 Predicted alpha/beta h 98.3 1E-06 2.2E-11 56.9 3.7 64 122-185 210-280 (281)
109 KOG3975 Uncharacterized conser 98.3 8.6E-07 1.9E-11 57.8 3.2 178 1-185 115-300 (301)
110 KOG2551 Phospholipase/carboxyh 98.2 4.3E-06 9.3E-11 53.7 5.5 62 124-188 159-220 (230)
111 PRK04940 hypothetical protein; 98.2 6.8E-05 1.5E-09 47.3 10.0 52 130-186 126-178 (180)
112 cd00707 Pancreat_lipase_like P 98.1 1.4E-06 3E-11 59.5 2.1 33 1-33 117-149 (275)
113 COG3458 Acetyl esterase (deace 98.1 1.5E-05 3.2E-10 53.0 6.6 64 122-188 253-317 (321)
114 TIGR03101 hydr2_PEP hydrolase, 98.1 1.6E-06 3.5E-11 58.7 2.1 31 1-31 104-134 (266)
115 KOG4627 Kynurenine formamidase 98.1 2.5E-06 5.5E-11 54.1 2.7 51 123-173 202-252 (270)
116 PRK10252 entF enterobactin syn 98.1 1.2E-05 2.6E-10 66.6 7.3 49 125-174 1233-1281(1296)
117 TIGR03230 lipo_lipase lipoprot 98.1 2.1E-06 4.5E-11 61.9 2.2 33 1-33 124-156 (442)
118 PF07859 Abhydrolase_3: alpha/ 98.0 1E-05 2.2E-10 53.2 4.7 42 129-170 167-210 (211)
119 PF04301 DUF452: Protein of un 97.9 0.00025 5.3E-09 46.2 8.6 37 132-171 169-205 (213)
120 PRK10439 enterobactin/ferric e 97.9 7.6E-05 1.6E-09 54.0 7.0 30 1-30 293-322 (411)
121 PF10142 PhoPQ_related: PhoPQ- 97.8 0.00045 9.7E-09 49.0 10.3 64 125-191 259-323 (367)
122 PF03403 PAF-AH_p_II: Platelet 97.8 5.5E-05 1.2E-09 54.1 5.8 29 1-30 233-261 (379)
123 KOG3043 Predicted hydrolase re 97.8 5.2E-05 1.1E-09 49.0 4.6 68 121-188 157-240 (242)
124 PF05705 DUF829: Eukaryotic pr 97.8 0.00032 6.9E-09 47.2 8.7 60 126-185 176-240 (240)
125 smart00824 PKS_TE Thioesterase 97.8 7.4E-05 1.6E-09 48.9 5.6 59 125-184 150-211 (212)
126 KOG2100 Dipeptidyl aminopeptid 97.8 0.00015 3.3E-09 56.5 7.7 66 124-190 677-749 (755)
127 KOG1515 Arylacetamide deacetyl 97.8 0.00011 2.4E-09 51.4 6.2 59 130-188 270-335 (336)
128 COG3319 Thioesterase domains o 97.7 0.00018 3.8E-09 48.5 6.8 32 1-32 70-104 (257)
129 TIGR00976 /NonD putative hydro 97.7 0.00035 7.6E-09 52.9 9.2 32 1-32 102-133 (550)
130 PF03583 LIP: Secretory lipase 97.6 0.0015 3.3E-08 45.2 10.2 64 126-192 217-285 (290)
131 PLN02733 phosphatidylcholine-s 97.6 3.3E-05 7.1E-10 56.1 2.2 32 1-32 167-202 (440)
132 PF00756 Esterase: Putative es 97.6 3.5E-05 7.6E-10 52.1 1.8 30 1-30 120-149 (251)
133 PF10503 Esterase_phd: Esteras 97.6 0.0006 1.3E-08 44.9 7.3 31 1-31 102-132 (220)
134 PF07819 PGAP1: PGAP1-like pro 97.6 4.2E-05 9.1E-10 50.7 1.9 31 1-31 90-123 (225)
135 PTZ00472 serine carboxypeptida 97.5 0.00023 5.1E-09 52.4 4.7 61 128-188 364-459 (462)
136 PF06057 VirJ: Bacterial virul 97.5 0.00022 4.8E-09 45.3 4.0 52 129-187 140-191 (192)
137 KOG2112 Lysophospholipase [Lip 97.5 0.00054 1.2E-08 44.0 5.7 56 128-187 144-203 (206)
138 PF02129 Peptidase_S15: X-Pro 97.4 4.8E-05 1E-09 52.1 1.1 31 1-31 106-136 (272)
139 KOG2565 Predicted hydrolases o 97.3 0.0019 4.1E-08 45.4 7.6 62 126-189 402-464 (469)
140 COG1073 Hydrolases of the alph 97.3 0.00052 1.1E-08 47.4 4.9 66 123-188 226-297 (299)
141 COG4099 Predicted peptidase [G 97.3 0.00036 7.9E-09 47.3 3.5 30 1-30 274-303 (387)
142 COG2819 Predicted hydrolase of 97.3 0.00018 3.9E-09 48.1 2.0 30 1-30 142-171 (264)
143 PF07224 Chlorophyllase: Chlor 97.2 0.0012 2.6E-08 44.1 5.1 31 1-31 125-157 (307)
144 cd00741 Lipase Lipase. Lipase 97.1 0.00029 6.3E-09 43.9 1.8 30 1-30 33-66 (153)
145 COG0657 Aes Esterase/lipase [L 97.1 0.003 6.4E-08 44.4 6.9 59 128-186 245-308 (312)
146 COG4188 Predicted dienelactone 97.0 0.00018 4E-09 50.2 0.3 57 121-177 244-303 (365)
147 KOG3253 Predicted alpha/beta h 97.0 0.0024 5.1E-08 47.7 5.5 52 121-172 297-349 (784)
148 PF00450 Peptidase_S10: Serine 97.0 0.00066 1.4E-08 49.5 2.7 59 128-186 330-414 (415)
149 PLN02633 palmitoyl protein thi 96.9 0.0043 9.2E-08 42.8 6.3 31 1-31 99-131 (314)
150 KOG2281 Dipeptidyl aminopeptid 96.9 0.007 1.5E-07 45.8 7.3 60 128-187 802-866 (867)
151 KOG3847 Phospholipase A2 (plat 96.8 0.0071 1.5E-07 41.6 6.5 29 1-30 246-274 (399)
152 PLN02213 sinapoylglucose-malat 96.8 0.0036 7.9E-08 44.0 5.4 60 128-188 233-317 (319)
153 COG0627 Predicted esterase [Ge 96.8 0.00043 9.4E-09 48.2 0.8 32 1-32 157-188 (316)
154 PLN02606 palmitoyl-protein thi 96.7 0.011 2.4E-07 40.8 6.8 31 1-31 100-132 (306)
155 PF12740 Chlorophyllase2: Chlo 96.6 0.0012 2.5E-08 44.5 1.8 30 1-30 96-130 (259)
156 PF11187 DUF2974: Protein of u 96.6 0.0015 3.1E-08 43.4 2.1 31 1-31 89-123 (224)
157 PF02450 LCAT: Lecithin:choles 96.6 0.0011 2.4E-08 47.9 1.7 32 1-32 124-161 (389)
158 PLN02209 serine carboxypeptida 96.5 0.0082 1.8E-07 44.1 5.7 59 128-187 351-434 (437)
159 PF00151 Lipase: Lipase; Inte 96.5 0.0018 4E-08 45.6 2.1 34 1-34 155-190 (331)
160 PLN03016 sinapoylglucose-malat 96.4 0.011 2.4E-07 43.4 5.8 60 128-188 347-431 (433)
161 PF06850 PHB_depo_C: PHB de-po 96.4 0.0065 1.4E-07 38.8 4.0 61 128-188 134-202 (202)
162 PF02273 Acyl_transf_2: Acyl t 96.4 0.015 3.2E-07 38.7 5.5 48 123-170 190-239 (294)
163 KOG1282 Serine carboxypeptidas 96.4 0.012 2.7E-07 43.2 5.6 61 129-189 364-449 (454)
164 PF06259 Abhydrolase_8: Alpha/ 96.2 0.0037 8.1E-08 39.7 2.0 32 1-32 114-145 (177)
165 COG2382 Fes Enterochelin ester 96.1 0.0038 8.3E-08 42.6 1.8 31 1-31 182-212 (299)
166 PF01764 Lipase_3: Lipase (cla 96.0 0.0044 9.6E-08 37.8 1.9 18 1-18 69-86 (140)
167 cd00519 Lipase_3 Lipase (class 95.9 0.0049 1.1E-07 41.2 1.7 18 1-18 133-150 (229)
168 KOG3724 Negative regulator of 95.8 0.0039 8.5E-08 48.1 1.2 31 1-31 187-220 (973)
169 COG2830 Uncharacterized protei 95.8 0.049 1.1E-06 33.8 5.5 29 1-31 62-90 (214)
170 COG1075 LipA Predicted acetylt 95.7 0.0058 1.3E-07 43.3 1.5 32 1-32 132-165 (336)
171 COG1770 PtrB Protease II [Amin 95.4 0.22 4.8E-06 38.3 8.6 32 1-32 532-563 (682)
172 COG4814 Uncharacterized protei 95.3 0.012 2.5E-07 39.4 1.9 32 1-32 141-177 (288)
173 COG4947 Uncharacterized protei 95.3 0.0093 2E-07 37.3 1.2 30 2-31 107-136 (227)
174 KOG3101 Esterase D [General fu 94.9 0.0024 5.1E-08 41.3 -2.2 31 1-31 146-176 (283)
175 COG4287 PqaA PhoPQ-activated p 94.6 0.51 1.1E-05 33.8 8.1 63 125-190 326-389 (507)
176 PF07082 DUF1350: Protein of u 94.5 0.029 6.3E-07 37.5 2.1 30 1-30 95-124 (250)
177 PF12048 DUF3530: Protein of u 94.4 0.22 4.7E-06 35.1 6.3 30 1-30 198-228 (310)
178 PF05057 DUF676: Putative seri 94.4 0.026 5.6E-07 37.5 1.7 15 1-15 83-97 (217)
179 PLN02162 triacylglycerol lipas 94.1 0.047 1E-06 40.1 2.6 15 1-15 283-297 (475)
180 PF12715 Abhydrolase_7: Abhydr 93.6 0.049 1.1E-06 39.0 1.9 29 1-30 231-259 (390)
181 COG2936 Predicted acyl esteras 93.6 0.73 1.6E-05 35.2 7.8 32 1-32 129-160 (563)
182 KOG4840 Predicted hydrolases o 93.4 0.39 8.5E-06 31.8 5.5 31 1-31 112-144 (299)
183 PLN00413 triacylglycerol lipas 93.4 0.074 1.6E-06 39.2 2.5 15 1-15 289-303 (479)
184 PF05990 DUF900: Alpha/beta hy 93.2 0.071 1.5E-06 35.8 2.1 30 1-30 98-136 (233)
185 PLN02571 triacylglycerol lipas 93.1 0.055 1.2E-06 39.3 1.5 16 1-16 231-246 (413)
186 COG4553 DepA Poly-beta-hydroxy 92.6 2.5 5.5E-05 29.5 10.7 66 128-193 339-412 (415)
187 PLN02310 triacylglycerol lipas 92.6 0.068 1.5E-06 38.7 1.4 16 1-16 214-229 (405)
188 PF07519 Tannase: Tannase and 92.5 0.06 1.3E-06 40.2 1.1 65 128-192 353-431 (474)
189 PLN02454 triacylglycerol lipas 92.4 0.079 1.7E-06 38.5 1.6 16 1-16 233-248 (414)
190 PF01674 Lipase_2: Lipase (cla 92.3 0.12 2.6E-06 34.4 2.2 17 1-17 80-96 (219)
191 KOG1553 Predicted alpha/beta h 92.2 0.069 1.5E-06 37.6 1.1 29 1-30 316-344 (517)
192 PLN02324 triacylglycerol lipas 92.2 0.087 1.9E-06 38.3 1.6 16 1-16 220-235 (415)
193 PLN02408 phospholipase A1 91.8 0.1 2.2E-06 37.3 1.6 18 1-18 205-222 (365)
194 PF11144 DUF2920: Protein of u 91.3 0.13 2.9E-06 37.2 1.7 62 129-190 294-370 (403)
195 KOG2369 Lecithin:cholesterol a 91.2 0.072 1.6E-06 39.0 0.4 30 1-30 187-224 (473)
196 PLN02517 phosphatidylcholine-s 91.2 0.11 2.5E-06 39.5 1.4 31 1-31 218-263 (642)
197 PLN02719 triacylglycerol lipas 90.9 0.14 3E-06 38.2 1.5 16 1-16 303-318 (518)
198 PLN02847 triacylglycerol lipas 90.9 0.14 2.9E-06 39.0 1.5 16 1-16 256-271 (633)
199 PLN02761 lipase class 3 family 90.9 0.14 3E-06 38.3 1.5 16 1-16 299-314 (527)
200 PF02089 Palm_thioest: Palmito 90.7 0.16 3.6E-06 34.9 1.6 31 1-31 85-116 (279)
201 PLN02753 triacylglycerol lipas 90.5 0.15 3.4E-06 38.1 1.5 16 1-16 317-332 (531)
202 PLN03037 lipase class 3 family 90.5 0.16 3.5E-06 38.0 1.6 16 1-16 323-338 (525)
203 PF07519 Tannase: Tannase and 90.4 1.1 2.3E-05 33.9 5.7 32 1-32 120-151 (474)
204 PF05277 DUF726: Protein of un 90.4 0.18 4E-06 35.9 1.7 31 1-31 225-260 (345)
205 PLN02934 triacylglycerol lipas 90.3 0.17 3.8E-06 37.7 1.6 15 1-15 326-340 (515)
206 PF10340 DUF2424: Protein of u 90.0 2.2 4.8E-05 31.0 6.7 34 1-34 200-238 (374)
207 PF05576 Peptidase_S37: PS-10 89.8 0.51 1.1E-05 34.4 3.5 56 129-186 352-412 (448)
208 PLN02802 triacylglycerol lipas 89.8 0.21 4.5E-06 37.3 1.6 17 1-17 335-351 (509)
209 KOG3967 Uncharacterized conser 89.7 0.18 3.9E-06 33.1 1.1 30 1-30 195-226 (297)
210 KOG4569 Predicted lipase [Lipi 89.5 0.23 5E-06 35.5 1.7 15 2-16 177-191 (336)
211 PF05577 Peptidase_S28: Serine 89.5 0.24 5.2E-06 36.8 1.8 31 1-31 118-148 (434)
212 KOG2183 Prolylcarboxypeptidase 89.0 0.21 4.5E-06 36.2 1.2 31 1-31 172-202 (492)
213 TIGR03502 lipase_Pla1_cef extr 88.3 0.26 5.6E-06 39.2 1.4 16 1-16 560-575 (792)
214 PF01083 Cutinase: Cutinase; 87.4 0.34 7.4E-06 31.1 1.3 31 1-31 86-122 (179)
215 COG3509 LpqC Poly(3-hydroxybut 84.9 0.89 1.9E-05 31.6 2.3 30 2-31 150-179 (312)
216 KOG4540 Putative lipase essent 83.7 0.85 1.8E-05 31.5 1.8 17 2-18 282-298 (425)
217 COG5153 CVT17 Putative lipase 83.7 0.85 1.8E-05 31.5 1.8 17 2-18 282-298 (425)
218 COG4782 Uncharacterized protei 82.0 1 2.2E-05 32.3 1.8 30 1-30 196-233 (377)
219 PF05677 DUF818: Chlamydia CHL 81.1 1 2.2E-05 32.1 1.5 17 2-18 221-237 (365)
220 COG3150 Predicted esterase [Ge 80.7 0.88 1.9E-05 28.8 1.0 28 1-31 64-91 (191)
221 COG2939 Carboxypeptidase C (ca 79.1 2.5 5.4E-05 31.8 3.0 28 159-187 463-490 (498)
222 KOG2521 Uncharacterized conser 75.9 9.6 0.00021 27.6 5.0 65 128-192 225-294 (350)
223 PF05577 Peptidase_S28: Serine 75.3 3.9 8.4E-05 30.6 3.2 40 129-171 377-416 (434)
224 cd00312 Esterase_lipase Estera 72.2 1.5 3.3E-05 33.2 0.5 31 1-31 181-213 (493)
225 COG1505 Serine proteases of th 71.3 7.1 0.00015 30.3 3.7 29 2-30 506-534 (648)
226 KOG2541 Palmitoyl protein thio 71.0 3 6.5E-05 28.7 1.6 31 1-31 97-128 (296)
227 PTZ00472 serine carboxypeptida 70.3 2.8 6.1E-05 31.6 1.5 31 1-31 176-216 (462)
228 PF11288 DUF3089: Protein of u 69.5 2.6 5.6E-05 27.9 1.0 17 1-17 100-116 (207)
229 KOG2237 Predicted serine prote 67.5 2.1 4.6E-05 33.2 0.4 30 1-30 554-583 (712)
230 PF10605 3HBOH: 3HB-oligomer h 66.3 9.1 0.0002 29.9 3.4 41 128-168 555-603 (690)
231 KOG2029 Uncharacterized conser 66.2 3.3 7.2E-05 32.0 1.2 30 1-30 531-571 (697)
232 PF06500 DUF1100: Alpha/beta h 58.6 20 0.00043 26.8 3.9 62 127-189 188-256 (411)
233 cd07212 Pat_PNPLA9 Patatin-lik 57.8 7 0.00015 27.8 1.5 17 1-17 37-53 (312)
234 KOG1202 Animal-type fatty acid 57.5 9 0.0002 32.9 2.2 33 1-33 2187-2221(2376)
235 cd06896 PX_PI3K_C2_gamma The p 57.0 24 0.00052 20.3 3.2 49 146-194 39-87 (101)
236 cd08769 DAP_dppA_2 Peptidase M 54.3 42 0.00092 23.5 4.7 56 126-187 145-202 (270)
237 PF06289 FlbD: Flagellar prote 51.4 14 0.0003 19.0 1.6 36 152-188 23-58 (60)
238 COG0796 MurI Glutamate racemas 50.9 84 0.0018 22.1 5.6 58 128-188 5-66 (269)
239 cd07207 Pat_ExoU_VipD_like Exo 50.1 10 0.00022 24.7 1.3 17 1-17 32-48 (194)
240 cd07225 Pat_PNPLA6_PNPLA7 Pata 47.9 10 0.00023 26.9 1.1 17 1-17 48-64 (306)
241 PRK10279 hypothetical protein; 47.3 6.7 0.00015 27.8 0.2 22 1-22 38-59 (300)
242 cd07198 Patatin Patatin-like p 47.2 11 0.00024 24.0 1.1 18 1-18 31-48 (172)
243 PHA02595 tk.4 hypothetical pro 45.8 14 0.00031 23.1 1.4 19 3-21 29-47 (154)
244 cd07230 Pat_TGL4-5_like Triacy 45.2 7.4 0.00016 29.1 0.1 24 1-24 106-129 (421)
245 PF08237 PE-PPE: PE-PPE domain 44.9 12 0.00027 25.2 1.1 17 1-17 53-69 (225)
246 COG1582 FlgEa Uncharacterized 43.9 23 0.00051 18.3 1.7 47 141-189 13-59 (67)
247 cd07228 Pat_NTE_like_bacteria 43.8 14 0.0003 23.6 1.2 19 1-19 33-51 (175)
248 KOG4372 Predicted alpha/beta h 43.3 4.5 9.8E-05 29.6 -1.2 14 1-14 155-168 (405)
249 KOG2214 Predicted esterase of 43.1 14 0.0003 28.2 1.2 27 2-28 208-234 (543)
250 PF08257 Sulfakinin: Sulfakini 42.4 14 0.00031 10.8 0.5 6 163-168 2-7 (9)
251 PF00135 COesterase: Carboxyle 42.3 20 0.00044 27.5 2.0 31 1-31 213-245 (535)
252 cd07209 Pat_hypo_Ecoli_Z1214_l 42.3 15 0.00031 24.6 1.1 18 1-18 31-48 (215)
253 TIGR02069 cyanophycinase cyano 42.0 88 0.0019 21.7 4.8 51 132-187 2-54 (250)
254 cd07232 Pat_PLPL Patain-like p 42.0 9.3 0.0002 28.4 0.2 25 1-25 100-124 (407)
255 COG3946 VirJ Type IV secretory 41.9 94 0.002 23.4 5.0 51 129-188 397-449 (456)
256 COG4813 ThuA Trehalose utiliza 40.9 47 0.001 21.8 3.1 40 128-168 63-104 (261)
257 cd07208 Pat_hypo_Ecoli_yjju_li 40.9 16 0.00035 25.3 1.2 20 1-20 32-51 (266)
258 cd07210 Pat_hypo_W_succinogene 40.5 18 0.00038 24.4 1.3 18 1-18 33-50 (221)
259 cd07227 Pat_Fungal_NTE1 Fungal 40.4 16 0.00035 25.5 1.1 17 1-17 43-59 (269)
260 PF00698 Acyl_transf_1: Acyl t 38.0 17 0.00036 26.0 0.9 17 1-17 89-105 (318)
261 TIGR00128 fabD malonyl CoA-acy 37.5 21 0.00045 25.0 1.3 18 1-18 88-105 (290)
262 cd07217 Pat17_PNPLA8_PNPLA9_li 36.5 23 0.0005 25.8 1.5 17 1-17 46-62 (344)
263 cd08663 DAP_dppA_1 Peptidase M 36.3 1.2E+02 0.0027 21.3 4.7 56 126-187 145-202 (266)
264 cd03145 GAT1_cyanophycinase Ty 36.0 1.4E+02 0.0029 20.1 5.0 53 130-187 1-55 (217)
265 KOG2182 Hydrolytic enzymes of 35.3 33 0.00071 26.3 2.0 31 1-31 177-207 (514)
266 cd00281 DAP_dppA Peptidase M55 34.7 1.3E+02 0.0028 21.2 4.6 55 126-186 144-200 (265)
267 KOG2182 Hydrolytic enzymes of 34.4 31 0.00068 26.4 1.8 41 128-171 433-473 (514)
268 TIGR03131 malonate_mdcH malona 34.3 25 0.00055 24.7 1.4 17 1-17 81-97 (295)
269 cd08770 DAP_dppA_3 Peptidase M 34.1 1.2E+02 0.0026 21.3 4.4 57 126-188 145-202 (263)
270 PF12641 Flavodoxin_3: Flavodo 33.9 1.1E+02 0.0024 19.5 4.0 59 129-187 40-98 (160)
271 PF13709 DUF4159: Domain of un 33.4 1.5E+02 0.0033 19.9 5.4 38 128-165 53-90 (207)
272 cd07229 Pat_TGL3_like Triacylg 33.3 18 0.0004 26.7 0.6 26 1-26 116-141 (391)
273 PLN02752 [acyl-carrier protein 33.1 28 0.00062 25.2 1.5 17 1-17 129-145 (343)
274 smart00827 PKS_AT Acyl transfe 33.0 26 0.00056 24.6 1.3 17 1-17 87-103 (298)
275 cd07222 Pat_PNPLA4 Patatin-lik 33.0 20 0.00044 24.6 0.7 20 1-21 36-55 (246)
276 cd07211 Pat_PNPLA8 Patatin-lik 32.3 26 0.00056 24.9 1.2 15 1-15 46-60 (308)
277 COG1752 RssA Predicted esteras 31.7 33 0.00072 24.4 1.6 18 1-18 44-61 (306)
278 cd07213 Pat17_PNPLA8_PNPLA9_li 31.3 28 0.00061 24.5 1.2 17 1-17 39-55 (288)
279 cd07231 Pat_SDP1-like Sugar-De 31.2 24 0.00053 25.3 0.8 25 1-25 101-125 (323)
280 KOG1283 Serine carboxypeptidas 31.1 27 0.00059 25.2 1.1 57 128-184 325-410 (414)
281 cd07205 Pat_PNPLA6_PNPLA7_NTE1 29.6 32 0.00068 22.0 1.1 17 1-17 33-49 (175)
282 cd03331 Macro_Poa1p_like_SNF2 29.2 37 0.0008 21.4 1.3 17 3-19 30-47 (152)
283 COG4667 Predicted esterase of 28.9 21 0.00044 24.9 0.2 26 1-26 45-70 (292)
284 TIGR00067 glut_race glutamate 28.6 1.2E+02 0.0026 21.0 3.8 41 144-184 11-52 (251)
285 PF01751 Toprim: Toprim domain 28.4 1E+02 0.0022 17.4 3.0 34 145-178 9-42 (100)
286 PF14553 YqbF: YqbF, hypotheti 28.3 20 0.00043 17.0 0.0 24 166-189 10-33 (43)
287 PF00650 CRAL_TRIO: CRAL/TRIO 27.8 53 0.0012 20.2 1.9 19 12-30 91-109 (159)
288 PF01734 Patatin: Patatin-like 27.5 38 0.00083 21.5 1.3 17 1-17 32-48 (204)
289 PF04951 Peptidase_M55: D-amin 26.6 55 0.0012 22.9 1.9 56 126-187 145-202 (265)
290 cd07224 Pat_like Patatin-like 26.5 38 0.00082 23.0 1.1 19 1-19 34-52 (233)
291 cd02001 TPP_ComE_PpyrDC Thiami 26.3 60 0.0013 20.4 1.9 25 1-30 44-68 (157)
292 COG3621 Patatin [General funct 26.2 52 0.0011 23.9 1.7 17 2-18 48-64 (394)
293 PHA00026 cp coat protein 26.1 45 0.00098 19.0 1.2 35 158-192 6-40 (129)
294 PRK07313 phosphopantothenoylcy 26.0 2E+02 0.0042 18.8 4.7 60 128-187 113-180 (182)
295 PRK00865 glutamate racemase; P 25.6 1.5E+02 0.0032 20.7 3.8 52 129-183 6-58 (261)
296 PF08384 NPP: Pro-opiomelanoco 25.5 50 0.0011 15.8 1.1 14 157-170 30-43 (45)
297 cd07204 Pat_PNPLA_like Patatin 25.4 41 0.00089 23.1 1.1 20 1-20 36-56 (243)
298 cd07199 Pat17_PNPLA8_PNPLA9_li 25.4 46 0.001 22.9 1.4 16 1-16 39-54 (258)
299 KOG4628 Predicted E3 ubiquitin 25.1 45 0.00098 24.3 1.3 53 128-188 214-266 (348)
300 PF10929 DUF2811: Protein of u 25.1 84 0.0018 16.0 1.9 20 169-188 22-41 (57)
301 COG2230 Cfa Cyclopropane fatty 24.6 53 0.0011 23.2 1.5 28 1-29 79-106 (283)
302 PF15061 DUF4538: Domain of un 24.5 62 0.0013 16.5 1.4 14 5-18 11-24 (58)
303 cd07216 Pat17_PNPLA8_PNPLA9_li 24.4 41 0.00088 24.0 1.0 15 1-15 47-61 (309)
304 PF11884 DUF3404: Domain of un 24.0 38 0.00081 23.5 0.7 22 3-24 111-132 (262)
305 TIGR02816 pfaB_fam PfaB family 23.4 49 0.0011 25.9 1.3 17 1-17 270-286 (538)
306 COG5243 HRD1 HRD ubiquitin lig 23.3 67 0.0015 23.7 1.8 28 156-191 310-337 (491)
307 cd06533 Glyco_transf_WecG_TagA 23.3 1E+02 0.0023 19.7 2.6 34 128-163 46-79 (171)
308 KOG2385 Uncharacterized conser 22.8 61 0.0013 25.2 1.6 32 1-32 452-488 (633)
309 cd07214 Pat17_isozyme_like Pat 22.8 51 0.0011 24.1 1.3 17 1-17 48-64 (349)
310 cd07218 Pat_iPLA2 Calcium-inde 22.6 58 0.0013 22.4 1.4 18 1-18 35-52 (245)
311 cd07215 Pat17_PNPLA8_PNPLA9_li 22.5 56 0.0012 23.6 1.4 15 1-15 45-59 (329)
312 PF03295 Pox_TAA1: Poxvirus tr 22.2 60 0.0013 16.7 1.1 17 168-184 20-36 (63)
313 COG0746 MobA Molybdopterin-gua 21.8 2.3E+02 0.0051 18.7 4.0 63 127-189 85-151 (192)
314 PF09604 Potass_KdpF: F subuni 21.7 58 0.0013 13.3 0.8 10 12-21 16-25 (25)
315 cd07206 Pat_TGL3-4-5_SDP1 Tria 21.5 63 0.0014 23.1 1.4 21 1-21 102-122 (298)
316 PF03880 DbpA: DbpA RNA bindin 21.4 58 0.0013 17.4 1.0 57 133-189 5-63 (74)
317 COG3411 Ferredoxin [Energy pro 20.3 1.4E+02 0.003 15.7 2.2 32 157-189 18-49 (64)
318 PF00070 Pyr_redox: Pyridine n 20.1 83 0.0018 16.8 1.5 25 6-30 7-31 (80)
No 1
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.97 E-value=7.2e-30 Score=175.20 Aligned_cols=188 Identities=76% Similarity=1.321 Sum_probs=122.3
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
|||||||++++.+|.++|++|+++|++++..........+.........+...+........++........+...+...
T Consensus 107 vGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (294)
T PLN02824 107 ICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNILCQC 186 (294)
T ss_pred EEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHHHHh
Confidence 69999999999999999999999999998643221111111112222222222222222222222222333334444434
Q ss_pred cCCCCcccHHHHHHHhccCCCCchHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEE
Q 028774 81 YNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFI 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~ 160 (204)
+.+.....++..+.+............+..+............+.++++|+++|+|++|.+++.+..+.+.+..++++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~~~~~~ 266 (294)
T PLN02824 187 YHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFDAVEDFI 266 (294)
T ss_pred ccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcCCccceE
Confidence 44444455555555544444443344444433222222223557889999999999999999999999888888889999
Q ss_pred EcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 161 VLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 161 ~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
+++++||++++|+|++|++.|.+|++++
T Consensus 267 ~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 267 VLPGVGHCPQDEAPELVNPLIESFVARH 294 (294)
T ss_pred EeCCCCCChhhhCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999864
No 2
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.95 E-value=2e-26 Score=161.63 Aligned_cols=189 Identities=29% Similarity=0.530 Sum_probs=114.7
Q ss_pred CccchhHHHHHHHHh-hccchhcceEEeecccchhccccCC-CCCC---chhHHHHHHhhcchhhhhHHhhcCCHHHHHH
Q 028774 1 MVSEQTGLVGLQAAV-MEPEICRGMILLNISLRMLHIKKQP-WYGR---PLIRSFQNLLRNTAAGKLFYKMVATSESVRN 75 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~-~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (204)
|||||||.+++.+|. .+|++|+++|++++........... +... .....+............++........++.
T Consensus 160 vGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (360)
T PLN02679 160 IGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRDNLKN 239 (360)
T ss_pred EEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHHHHHH
Confidence 699999999999887 4799999999999864321100000 0000 0000000111111111111222222333444
Q ss_pred HHHhhcCCCCcccHHHHHHHhccCCCCchHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhH-----HHHh
Q 028774 76 ILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIEL-----GRAY 150 (204)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~-----~~~~ 150 (204)
.+...+......+++..+.+............+..........+....+.++++|||+|+|++|.++|++. .+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~~~~l 319 (360)
T PLN02679 240 ILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKYFSSL 319 (360)
T ss_pred HHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHHHHhh
Confidence 44444444444555665555444444444444444432222222335577899999999999999998763 2456
Q ss_pred hccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 151 GNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 151 ~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
.+.+|++++++++++||++++|+|++|++.|.+||.+..
T Consensus 320 ~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~~ 358 (360)
T PLN02679 320 PSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQLP 358 (360)
T ss_pred hccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhcC
Confidence 677899999999999999999999999999999998753
No 3
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.94 E-value=1.3e-25 Score=151.33 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=102.7
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
|||||||.+++.+|.++|++|+++|++++.+........+.........+...+.. ........++...
T Consensus 79 vGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 147 (256)
T PRK10349 79 LGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSD-----------DFQRTVERFLALQ 147 (256)
T ss_pred EEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHh-----------chHHHHHHHHHHH
Confidence 69999999999999999999999999998643221111111000111111110000 0001111221111
Q ss_pred cCCCCcccHHHHH--HHhccCCCCchHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCcc
Q 028774 81 YNDTSQVTEELVE--KILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED 158 (204)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~ 158 (204)
.........+... .......... ..............+....+.++++||++|+|++|.+++.+..+.+.+.+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~~ 226 (256)
T PRK10349 148 TMGTETARQDARALKKTVLALPMPE-VDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSE 226 (256)
T ss_pred HccCchHHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCCe
Confidence 1111111111111 0001111111 111111111111223355678899999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 159 FIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 159 ~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
+++++++||++++|+|++|++.|.+|-++
T Consensus 227 ~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 227 SYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 99999999999999999999999998654
No 4
>PLN02578 hydrolase
Probab=99.93 E-value=2.8e-24 Score=150.76 Aligned_cols=184 Identities=24% Similarity=0.476 Sum_probs=113.6
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCC----CCch-----hHHHHHHhhcchhhhhHHhhcCCHH
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWY----GRPL-----IRSFQNLLRNTAAGKLFYKMVATSE 71 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (204)
|||||||.+++.+|.++|++|+++|++++.+........... .... ............. ...+.....+.
T Consensus 157 vG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 235 (354)
T PLN02578 157 VGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVL-GFLFWQAKQPS 235 (354)
T ss_pred EEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHH-HHHHHHhcCHH
Confidence 699999999999999999999999999986533221110000 0000 0001000000000 00011112223
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHhccCCCCchHHHHHHHHhh----cCCCCCCccCCCCCCCeEEEeeCCCCCcchhHH
Q 028774 72 SVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFICY----SGGPLPEELLPQVKCPVLIAWGDKDPWEPIELG 147 (204)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~ 147 (204)
.+.......+.+....++...+........+.....+...... .......+.+.++++|+++|+|++|.+++.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~~~~ 315 (354)
T PLN02578 236 RIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGPAKA 315 (354)
T ss_pred HHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCHHHH
Confidence 3333333334444444445555444444444433333333221 112223456788999999999999999999999
Q ss_pred HHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 148 RAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
+.+.+.+|+++++++ ++||+++.|+|+++++.|.+|++
T Consensus 316 ~~l~~~~p~a~l~~i-~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 316 EKIKAFYPDTTLVNL-QAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHhCCCCEEEEe-CCCCCccccCHHHHHHHHHHHHh
Confidence 999999999999999 58999999999999999999985
No 5
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.92 E-value=1.6e-25 Score=153.61 Aligned_cols=69 Identities=36% Similarity=0.672 Sum_probs=62.9
Q ss_pred CccCCCCC-CCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 121 EELLPQVK-CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 121 ~~~~~~i~-~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
...+.++. ||+++++|++|.++|.+.+..+.+..|+++++++++|||.+|+|+|+++++.|..|+.+..
T Consensus 256 ~~~~~~i~~~pvlii~G~~D~~~p~~~~~~~~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 256 LSLIKKIWKCPVLIIWGDKDQIVPLELAEELKKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHhhccccCCceEEEEcCcCCccCHHHHHHHHhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHHhc
Confidence 33456676 9999999999999999999999998899999999999999999999999999999998753
No 6
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.91 E-value=1.5e-23 Score=140.26 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=60.7
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHh
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 185 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl 185 (204)
...+.++++|+++++|++|.+++.+..+.+.+.+|++++++++++||++++|+|+++++.|.+|+
T Consensus 181 ~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 181 RQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred HHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 44577899999999999999999999998999999999999999999999999999999999986
No 7
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.91 E-value=6.3e-24 Score=145.96 Aligned_cols=182 Identities=12% Similarity=0.150 Sum_probs=102.9
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
|||||||.+|+.+|.++|++|+++|++++........ ...... ......+.......... ..........+...
T Consensus 98 vGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 171 (295)
T PRK03592 98 VGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWD---DFPPAV-RELFQALRSPGEGEEMV--LEENVFIERVLPGS 171 (295)
T ss_pred EEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchh---hcchhH-HHHHHHHhCcccccccc--cchhhHHhhcccCc
Confidence 6999999999999999999999999999853211100 001111 11111111111000000 00011111111111
Q ss_pred cCCCCcccHHHHHHHhccCCCCchHHHHHHHHhhcCC-----------CCCCccCCCCCCCeEEEeeCCCCCcchh-HHH
Q 028774 81 YNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGG-----------PLPEELLPQVKCPVLIAWGDKDPWEPIE-LGR 148 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~P~lii~g~~D~~~~~~-~~~ 148 (204)
. ....+++....+......+........+...... ......+.++++|+|+|+|++|.++++. ..+
T Consensus 172 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~ 249 (295)
T PRK03592 172 I--LRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRD 249 (295)
T ss_pred c--cccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHH
Confidence 1 1123334343333332222222222222111000 0112346788999999999999999544 444
Q ss_pred HhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCC
Q 028774 149 AYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 149 ~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
.+.+..+++++++++++||+++.|+|+++++.|.+|+++...
T Consensus 250 ~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 250 WCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred HHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhcc
Confidence 455668899999999999999999999999999999987654
No 8
>PLN02965 Probable pheophorbidase
Probab=99.91 E-value=8.4e-24 Score=142.38 Aligned_cols=67 Identities=13% Similarity=-0.059 Sum_probs=62.6
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
.+.++++|+++|+|++|.+++++..+.+.+.+|+++++++++|||++++|+|++|++.|.+|++...
T Consensus 188 ~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~~ 254 (255)
T PLN02965 188 NPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSLQ 254 (255)
T ss_pred hhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHhc
Confidence 4557899999999999999999999999999999999999999999999999999999999988754
No 9
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.91 E-value=1.6e-23 Score=143.14 Aligned_cols=65 Identities=26% Similarity=0.392 Sum_probs=61.6
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
..+.++++|+|+++|++|.+++++..+.+.+.+|++++++++++||+++.|+|++|++.|.+||.
T Consensus 217 ~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 217 ARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred HHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 45778999999999999999999999999999999999999999999999999999999999986
No 10
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=139.38 Aligned_cols=187 Identities=17% Similarity=0.164 Sum_probs=104.4
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHH---HHHhh-cchhhhhHHhhcCCHHHHHHH
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSF---QNLLR-NTAAGKLFYKMVATSESVRNI 76 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (204)
|||||||.++..||.+||++|+.|||++|.+........+....+..... ..... ...+..........+.....+
T Consensus 165 vGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~ 244 (365)
T KOG4409|consen 165 VGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRL 244 (365)
T ss_pred eeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhh
Confidence 79999999999999999999999999999976553322222221111111 11111 011111111111122223222
Q ss_pred HHhhcCCC-CcccHHH-HHHHhccCCC-CchHHHHHHHHhhcC--CCCCCccCCCCC--CCeEEEeeCCCCCcchhHHHH
Q 028774 77 LCQCYNDT-SQVTEEL-VEKILQPGLE-TGAADVFLEFICYSG--GPLPEELLPQVK--CPVLIAWGDKDPWEPIELGRA 149 (204)
Q Consensus 77 ~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~i~--~P~lii~g~~D~~~~~~~~~~ 149 (204)
....+... ....++. .+........ +.....+..++.... .......+..++ ||+++|+|++|. .+......
T Consensus 245 ~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dW-mD~~~g~~ 323 (365)
T KOG4409|consen 245 RPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDW-MDKNAGLE 323 (365)
T ss_pred hHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccc-ccchhHHH
Confidence 22222111 1223333 3333333333 333444444433221 111233344444 999999999995 44444444
Q ss_pred hhcc--CCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 150 YGNF--DSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 150 ~~~~--~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
+.+. ...++.++++++||.+.+++|+.|++.+..+++..
T Consensus 324 ~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 324 VTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred HHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 4442 34589999999999999999999999999998763
No 11
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.90 E-value=2.1e-23 Score=142.05 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=63.3
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCC
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATP 191 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~ 191 (204)
..+.++++|+++|+|++|.+++++..+.+.+.+|+++++++++ ||++++|+|+++++.|.+|+++....
T Consensus 201 ~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~~~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~~~~~ 269 (276)
T TIGR02240 201 HWLHKIQQPTLVLAGDDDPIIPLINMRLLAWRIPNAELHIIDD-GHLFLITRAEAVAPIIMKFLAEERQR 269 (276)
T ss_pred hHhhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCCCCEEEEEcC-CCchhhccHHHHHHHHHHHHHHhhhh
Confidence 4478899999999999999999999999999999999999985 99999999999999999999986543
No 12
>PRK07581 hypothetical protein; Validated
Probab=99.90 E-value=5.5e-23 Score=143.78 Aligned_cols=70 Identities=10% Similarity=0.016 Sum_probs=64.6
Q ss_pred CCccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCC-CCCCCCCCCcchhhHHHHHHhhccC
Q 028774 120 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 120 ~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
....+.+|++|||+|+|++|..++++..+.+.+.+|+++++++++ +||++++|+|+.++..|.+||.+..
T Consensus 267 ~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 267 LAAALGSITAKTFVMPISTDLYFPPEDCEAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKELL 337 (339)
T ss_pred HHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999998 9999999999999999999998864
No 13
>PRK06489 hypothetical protein; Provisional
Probab=99.90 E-value=5.7e-23 Score=144.55 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=62.8
Q ss_pred CCCccCCCCCCCeEEEeeCCCCCcchhHH--HHhhccCCCccEEEcCCC----CCCCCCCCcchhhHHHHHHhhccCC
Q 028774 119 LPEELLPQVKCPVLIAWGDKDPWEPIELG--RAYGNFDSVEDFIVLPNV----GHCPQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 119 ~~~~~~~~i~~P~lii~g~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~----gH~~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
+..+.+.+|++|||+|+|++|.++|++.. +.+.+.+|++++++++++ ||+++ |+|++|++.|.+||+++..
T Consensus 283 d~~~~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~~~ 359 (360)
T PRK06489 283 NPSPDLEKIKAPVLAINSADDERNPPETGVMEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQVPK 359 (360)
T ss_pred ChHHHHHhCCCCEEEEecCCCcccChhhHHHHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhccc
Confidence 34566889999999999999999998865 778889999999999996 99997 8999999999999987653
No 14
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.89 E-value=2.7e-22 Score=136.90 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=60.8
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
..+.++++|+++|+|++|..++++..+.+.+.+++++++.++++||+++.|+|+++++.|.+|++
T Consensus 214 ~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 214 RDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred hhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 45778999999999999999999999999999999999999999999999999999999999984
No 15
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.89 E-value=1.9e-22 Score=141.07 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=61.0
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHHHHhhccC-CCccEEEcCC-CCCCCCCCCcchhhHHHHHHhhccCC
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPN-VGHCPQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
.+.+|++|+|+|+|++|.+++++..+.+.+.+ |+++++++++ +||++++|+|++|++.|.+||.+...
T Consensus 272 ~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~~~ 341 (343)
T PRK08775 272 DPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRSTGE 341 (343)
T ss_pred ChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhccc
Confidence 36789999999999999999988888888876 7999999985 99999999999999999999987643
No 16
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.89 E-value=1.1e-22 Score=135.04 Aligned_cols=187 Identities=20% Similarity=0.250 Sum_probs=109.1
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHH-HhhcchhhhhHHhhcCCHHHHHHHHHh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN-LLRNTAAGKLFYKMVATSESVRNILCQ 79 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (204)
+||+||+++|+.+|..+|++|+++|+++.+...............+.+.... ...........+.....+.....+...
T Consensus 118 vgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~ 197 (322)
T KOG4178|consen 118 VGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEMLVKTFRTR 197 (322)
T ss_pred EeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHHhHHhhhcc
Confidence 6999999999999999999999999999885511100000000000000000 001111111111111111111122111
Q ss_pred hcC-----C------CCcccHHHHHHHhccCCCC---chHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchh
Q 028774 80 CYN-----D------TSQVTEELVEKILQPGLET---GAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIE 145 (204)
Q Consensus 80 ~~~-----~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~ 145 (204)
... + ....+.+.++.+...+... +..+.+.++.+... .....+.++++|+++|+|+.|.+++..
T Consensus 198 ~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~--a~~~~~~~i~iPv~fi~G~~D~v~~~p 275 (322)
T KOG4178|consen 198 KTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWE--AAPWALAKITIPVLFIWGDLDPVLPYP 275 (322)
T ss_pred ccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCch--hccccccccccceEEEEecCcccccch
Confidence 111 0 1124556666665554332 23333333332221 235567889999999999999988866
Q ss_pred -HHHHhhccCCCc-cEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 146 -LGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 146 -~~~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
....+.+..|+. +.++++|+||+++.|+|++|++.|..|+++..
T Consensus 276 ~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 276 IFGELYRKDVPRLTERVVIEGIGHFVQQEKPQEVNQAILGFINSFS 321 (322)
T ss_pred hHHHHHHHhhccccceEEecCCcccccccCHHHHHHHHHHHHHhhc
Confidence 445566667776 77889999999999999999999999998753
No 17
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.88 E-value=3.7e-23 Score=147.78 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=59.7
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCC-CCcchhhHHHHHHhhcc
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQD-EAPHLVNPLVESFVTRH 188 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~~~ 188 (204)
.+|++|+|+|+|++|.++|++..+.+++.+|++++++++++||++++ |+|+++++.|.+|....
T Consensus 415 ~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 415 DQLKCDVAIFHGGDDELIPVECSYAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRRS 479 (481)
T ss_pred HhCCCCEEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhcc
Confidence 36899999999999999999999999999999999999999999885 99999999999998653
No 18
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.88 E-value=5.8e-22 Score=135.34 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=54.2
Q ss_pred CCCeEEEeeCCCCCcchh-HHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 128 KCPVLIAWGDKDPWEPIE-LGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
++||++|+|++|.++++. ..+.+.+.+|++++++++++||++++|+|+++++.|.+||.
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~~ 286 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERFG 286 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhcC
Confidence 899999999999987654 57888899999999999999999999999999999999973
No 19
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.88 E-value=3.3e-22 Score=140.49 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=61.1
Q ss_pred CCccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCC----CccEEEcCC-CCCCCCCCCcchhhHHHHHHhhc
Q 028774 120 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS----VEDFIVLPN-VGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 120 ~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
..+.+.++++|+|+|+|++|.++|++..+.+.+.++ +++++++++ +||+.++|+|+++++.|.+||++
T Consensus 315 l~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 315 LEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 355677899999999999999999999888888775 689999985 99999999999999999999976
No 20
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.88 E-value=5e-22 Score=133.97 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=61.7
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
..+..+++|+|+|+|++|..++.+..+.+.+.+|++++++++++||++++|+|+++++.|.+||.+
T Consensus 189 ~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 189 EKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred cccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 346678999999999999999999999999999999999999999999999999999999999975
No 21
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.87 E-value=3.4e-22 Score=140.23 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=61.1
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccC--CCccEEEcCCCCCCCCCCCcch----hhHHHHHHhhccCC
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQDEAPHL----VNPLVESFVTRHAT 190 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~p~~----~~~~i~~fl~~~~~ 190 (204)
..+.++++|+|+|+|++|.+++++..+.+.+.. ++.++++++++||+++.|+|++ +.+.|.+||+++..
T Consensus 273 ~~l~~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 273 MQLEEVSLPLLILHGEADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred HhcccCCCCEEEEEeCCCCccChHHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999999988888775 5789999999999999999987 88889999998753
No 22
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.87 E-value=5.8e-22 Score=139.07 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=60.2
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEE-----EcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFI-----VLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
.+.+.+|++|+|+|+|++|.++|++..+.+.+.+|+++++ +++++||++++|+|++|++.|.+||+
T Consensus 281 ~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 281 TEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred HHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 4668899999999999999999999999999999988766 56789999999999999999999984
No 23
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.87 E-value=5e-21 Score=135.94 Aligned_cols=71 Identities=18% Similarity=0.111 Sum_probs=58.0
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccC-CCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCCC
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPP 192 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~~ 192 (204)
...+.+|++|+++|+|++|.+.+ .....+.+.. +.+++++++++||++++|+|++|++.|.+|++......
T Consensus 318 ~~~l~~I~vP~liI~G~~D~i~~-~~~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~~~~~ 389 (402)
T PLN02894 318 LESASEWKVPTTFIYGRHDWMNY-EGAVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKYLSPD 389 (402)
T ss_pred hhhcccCCCCEEEEEeCCCCCCc-HHHHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHhccCC
Confidence 45578899999999999998765 4444444443 46899999999999999999999999999998877654
No 24
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.87 E-value=5.5e-22 Score=140.21 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=63.6
Q ss_pred CCccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCc----cEEEcC-CCCCCCCCCCcchhhHHHHHHhhccCC
Q 028774 120 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE----DFIVLP-NVGHCPQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 120 ~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~----~~~~~~-~~gH~~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
....+.+|++|+|+|+|++|.++|++..+.+.+.++++ ++++++ ++||++++|+|++|++.|.+||.+...
T Consensus 301 ~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~~~ 376 (379)
T PRK00175 301 LAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERAAR 376 (379)
T ss_pred HHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhhhh
Confidence 34567899999999999999999999999999998887 677775 899999999999999999999998654
No 25
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.87 E-value=4.4e-22 Score=137.21 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=58.8
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCcc---EEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED---FIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
.+.++++|+++|+|++|.+++... +.+.+.+++++ +++++++||++++|+|++|++.|.+|++++
T Consensus 234 ~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 234 VLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred hhhcCCCceEEEecCCCCcccCch-HHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 467899999999999999999876 77888888876 889999999999999999999999999865
No 26
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.86 E-value=3.8e-21 Score=129.66 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=61.9
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
...+.++++|+++++|++|.+++++..+.+.+.+++++++.++++||++++++|+++++.|.+||++
T Consensus 191 ~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 191 SARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPNAQLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred HHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCCceEEEECCCCCCccccCHHHHHHHHHHHhcC
Confidence 4557788999999999999999999999999999999999999999999999999999999999863
No 27
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.85 E-value=2.5e-21 Score=129.92 Aligned_cols=66 Identities=27% Similarity=0.412 Sum_probs=60.8
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
...+.++++|+++++|++|.+++.+..+.+.+..++.++++++++||++++++|+++++.|.+|++
T Consensus 186 ~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 186 RDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred HHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCCceEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 445678899999999999999999998889888999999999999999999999999999999974
No 28
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.85 E-value=1.9e-20 Score=125.36 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=51.5
Q ss_pred CCccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 120 PEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 120 ~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
..+.+.++++|+++|+|++|..+. . +.+. +++++++++++||++++|+|+++++.|.+|+.+
T Consensus 180 ~~~~l~~i~~P~lii~G~~D~~~~-~----~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 180 LRPALQALTFPFYYLCGERDSKFQ-A----LAQQ-LALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred HHHHhhccCCCeEEEEeCCcchHH-H----HHHH-hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 345678899999999999998543 1 2222 378999999999999999999999999999975
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.85 E-value=2.2e-20 Score=125.27 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=56.5
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
..+.++++|+++++|++|..++ +..+.+.+..++++++.++++||++++|+|+++++.|.+|++
T Consensus 188 ~~~~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 188 PKLQALTIPVLYLCGEKDEKFV-QIAKEMQKLLPNLTLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred HHhhCCCCceEEEeeCcchHHH-HHHHHHHhcCCCCcEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 4467889999999999998764 556778888899999999999999999999999999999984
No 30
>PHA02857 monoglyceride lipase; Provisional
Probab=99.85 E-value=6.3e-21 Score=129.99 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=59.4
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccC-CCccEEEcCCCCCCCCCCCc---chhhHHHHHHhhcc
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHCPQDEAP---HLVNPLVESFVTRH 188 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~e~p---~~~~~~i~~fl~~~ 188 (204)
..+.++++|+++++|++|.++|++..+.+.+.+ +++++++++++||.++.|++ +++.+.+.+||.++
T Consensus 203 ~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 203 KIIPKIKTPILILQGTNNEISDVSGAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HhcccCCCCEEEEecCCCCcCChHHHHHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 457789999999999999999999999988775 57899999999999999976 57889999999886
No 31
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.85 E-value=5e-21 Score=133.54 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccC--CCccEEEcCCCCCCCCCCCcc----hhhHHHHHHhhccCCCCC
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQDEAPH----LVNPLVESFVTRHATPPA 193 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~p~----~~~~~i~~fl~~~~~~~~ 193 (204)
..+.++++|+|+++|++|.+++++..+.+.+.+ ++.++++++|+||.++.++|+ ++.+.|.+||.+......
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~~~ 322 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTGKA 322 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccCCC
Confidence 456788999999999999999999998887765 478999999999999999886 467788999998865443
No 32
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.85 E-value=1.1e-19 Score=127.63 Aligned_cols=62 Identities=21% Similarity=0.463 Sum_probs=56.5
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
.++++|+++|+|++|.+++.+..+.+.+. ++++++++++|||++++|+|+++++.|.+|+.+
T Consensus 322 ~~i~vPvLiI~G~~D~~v~~~~~~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 322 KNWKTPITVCWGLRDRWLNYDGVEDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILSK 383 (383)
T ss_pred ccCCCCEEEEeeCCCCCcCHHHHHHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhhC
Confidence 36799999999999999999988888877 588999999999999999999999999999863
No 33
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.82 E-value=1.5e-19 Score=120.35 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=61.2
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
.....||+++.|.++..++.+....+.+.+|+++++.++++|||+|.|+|++|.+.|.+|+.+..
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEEPE 314 (315)
T ss_pred cccccceeEEecCCCCCcChhHHHHHHHhccchheeecccCCceeecCCHHHHHHHHHHHhcccC
Confidence 56789999999999999999999999999999999999999999999999999999999998764
No 34
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.82 E-value=2e-19 Score=123.15 Aligned_cols=65 Identities=23% Similarity=0.403 Sum_probs=57.9
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
...+.++++|+++++|++|.+ +++..+.+.+.++++++++++++||++++|+|+++++.|.+||+
T Consensus 224 ~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 224 TDKLSEIKVPTLLTVGEFDTM-TPEAAREMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred HHHhhccCCCEEEEecCCCcc-CHHHHHHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 345678999999999999985 56777888888999999999999999999999999999999984
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.82 E-value=1.9e-19 Score=127.67 Aligned_cols=63 Identities=33% Similarity=0.557 Sum_probs=54.7
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
..+.++++|+++++|++|.+++.+..+.+ .+++++.+++++||++++++|+++++.|.+||++
T Consensus 308 ~~l~~i~~Pvlii~g~~D~~vp~~~~~~l---~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 308 DRLASLAIPVLVIWGEQDRIIPAAHAQGL---PDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred HHHhcCCCCEEEEEECCCCccCHHHHhhc---cCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 34667899999999999999998765544 3468899999999999999999999999999975
No 36
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.82 E-value=2.1e-20 Score=115.43 Aligned_cols=158 Identities=23% Similarity=0.274 Sum_probs=105.5
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|+|-||..|+..|+++++.|.++|+.++......... ...+.++.........+.-+......+.++..+.
T Consensus 119 lGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~------ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa-- 190 (277)
T KOG2984|consen 119 LGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGA------MAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWA-- 190 (277)
T ss_pred eeecCCCeEEEEeeccChhhhhhheeecccceecchhH------HHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHH--
Confidence 59999999999999999999999999998744321110 0111111111100000000000111111111110
Q ss_pred cCCCCcccHHHHHHHhccCCCCchHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEE
Q 028774 81 YNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFI 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~ 160 (204)
...+....+....+....+..+.+++||++|++|+.|++++......+..+.+.+++.
T Consensus 191 ----------------------~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~a~~~ 248 (277)
T KOG2984|consen 191 ----------------------AWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSLAKVE 248 (277)
T ss_pred ----------------------HHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcccceEE
Confidence 0122233333344444456678999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 161 VLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 161 ~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
++|.++|.+++..+++|+..+.+||++.
T Consensus 249 ~~peGkHn~hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 249 IHPEGKHNFHLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred EccCCCcceeeechHHHHHHHHHHHhcc
Confidence 9999999999999999999999999864
No 37
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.82 E-value=1.3e-19 Score=146.62 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=60.9
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCC------------ccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV------------EDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
.+.+.++++|+|+|+|++|..++ +..+.+.+.+++ +++++++++||++++|+|+++++.|.+||.+.
T Consensus 1561 ~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1561 WEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred HHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHhc
Confidence 45688999999999999999775 555556665554 58999999999999999999999999999998
Q ss_pred CCCCCC
Q 028774 189 ATPPAS 194 (204)
Q Consensus 189 ~~~~~~ 194 (204)
...+++
T Consensus 1640 ~~~~~~ 1645 (1655)
T PLN02980 1640 HNSSTP 1645 (1655)
T ss_pred cccCCC
Confidence 765544
No 38
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.82 E-value=3e-21 Score=127.68 Aligned_cols=59 Identities=32% Similarity=0.525 Sum_probs=53.5
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHH
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPL 180 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~ 180 (204)
..+.++++|+++++|++|.+++.+..+.+.+..+++++++++++||++++|+|++|++.
T Consensus 170 ~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 170 EALPRIKVPVLVIHGEDDPIVPPESAEELADKLPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp HHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHSTTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred ccccccCCCeEEeecCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 34566789999999999999999999999988999999999999999999999999863
No 39
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.81 E-value=1.5e-21 Score=129.65 Aligned_cols=61 Identities=26% Similarity=0.515 Sum_probs=56.6
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHH
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVE 182 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~ 182 (204)
..+..+++|+++++|++|.++|++....+.+.+|+.++++++++||+.+++.|+++++.|.
T Consensus 169 ~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 169 PALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp HHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred ccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 3456799999999999999999999999999999999999999999999999999999875
No 40
>PRK10749 lysophospholipase L2; Provisional
Probab=99.81 E-value=3.7e-20 Score=128.90 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=56.6
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccC-------CCccEEEcCCCCCCCCCCCc---chhhHHHHHHhhcc
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-------SVEDFIVLPNVGHCPQDEAP---HLVNPLVESFVTRH 188 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-------~~~~~~~~~~~gH~~~~e~p---~~~~~~i~~fl~~~ 188 (204)
..+.++++|+|+|+|++|.+++++..+.+.+.+ +++++++++|+||.++.|.+ +.+.+.|.+||+++
T Consensus 253 ~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 253 AGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred hhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 346778999999999999999999888776654 45689999999999999886 66888899999865
No 41
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.79 E-value=3.7e-19 Score=120.62 Aligned_cols=62 Identities=18% Similarity=0.046 Sum_probs=56.5
Q ss_pred CCC-CCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 125 PQV-KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 125 ~~i-~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
.++ ++|+++|.|++|..+|++.++.+.+.+++.+++.++ +||.+++++|+++++.|.++...
T Consensus 207 ~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~~~~~~l~-~gH~p~ls~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 207 GDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPPSQVYELE-SDHSPFFSTPFLLFGLLIKAAAS 269 (273)
T ss_pred cccCccceEEEEeCCCCCCCHHHHHHHHHhCCccEEEEEC-CCCCccccCHHHHHHHHHHHHHH
Confidence 345 789999999999999999999999999989999997 89999999999999999988654
No 42
>PLN02511 hydrolase
Probab=99.77 E-value=1.1e-18 Score=123.70 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=60.6
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHH-HHhhccCCCccEEEcCCCCCCCCCCCcch------hhHHHHHHhhccCCC
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEAPHL------VNPLVESFVTRHATP 191 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~gH~~~~e~p~~------~~~~i~~fl~~~~~~ 191 (204)
...+.+|++|+|+|+|++|++++.+.. ....+..|++++++++++||+.++|+|+. +.+.+.+||+.....
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p~~~~~~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~~ 368 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAPARGIPREDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEEG 368 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCCcccCcHhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHHh
Confidence 456889999999999999999998754 44566789999999999999999999986 489999999877543
No 43
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.77 E-value=6.1e-19 Score=115.84 Aligned_cols=170 Identities=17% Similarity=0.139 Sum_probs=103.9
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+||||||.|++.++.+.|+...++|+++|...........+........+..++...... ....
T Consensus 134 ~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~~liP~wk~v-------p~~d--------- 197 (313)
T KOG1455|consen 134 FGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLSKLIPTWKIV-------PTKD--------- 197 (313)
T ss_pred eecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHHHhCCceeec-------CCcc---------
Confidence 599999999999999999999999999998765543332222222222222222211100 0000
Q ss_pred cCCCCcccHHHHHHHh-ccCCC--CchHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhHHHHhhcc--CC
Q 028774 81 YNDTSQVTEELVEKIL-QPGLE--TGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF--DS 155 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~--~~ 155 (204)
..+..--+++...... ++... .........+++.. .+....+.++++|.+|++|+.|.++.+...+.+.+. ..
T Consensus 198 ~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~--~~le~~l~~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~ 275 (313)
T KOG1455|consen 198 IIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVT--ADLEKNLNEVTVPFLILHGTDDKVTDPKVSKELYEKASSS 275 (313)
T ss_pred ccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHH--HHHHHhcccccccEEEEecCCCcccCcHHHHHHHHhccCC
Confidence 0000001122222211 12111 11223333333221 122556889999999999999999999999999887 45
Q ss_pred CccEEEcCCCCCCCCC-C---CcchhhHHHHHHhhcc
Q 028774 156 VEDFIVLPNVGHCPQD-E---APHLVNPLVESFVTRH 188 (204)
Q Consensus 156 ~~~~~~~~~~gH~~~~-e---~p~~~~~~i~~fl~~~ 188 (204)
+.+++.+||.-|.++. | +-+.|...|.+||+++
T Consensus 276 DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 276 DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 7899999999998885 3 3456778899999875
No 44
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.76 E-value=1.2e-17 Score=113.82 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=101.4
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+||||||.|++.++.+++.+|+++||.+|...... .........+................ . . ....
T Consensus 112 ~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~-~-~--~~~~ 178 (298)
T COG2267 112 LGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGG---------AILRLILARLALKLLGRIRPKLPVDS-N-L--LEGV 178 (298)
T ss_pred EEeCcHHHHHHHHHHhCCccccEEEEECccccCCh---------hHHHHHHHHHhcccccccccccccCc-c-c--ccCc
Confidence 59999999999999999999999999999753321 00000000000011111100000000 0 0 0011
Q ss_pred cCCCCcccHHHHHHHhccCC-C-Cc-hHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcc-hhHHHHhhcc--C
Q 028774 81 YNDTSQVTEELVEKILQPGL-E-TG-AADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEP-IELGRAYGNF--D 154 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~-~~~~~~~~~~--~ 154 (204)
......-+++..+.+...-. . .. ....+........ .........+++|+|+++|++|.+++ .+....+.+. .
T Consensus 179 ~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~-~~~~~~~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~ 257 (298)
T COG2267 179 LTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGR-VPALRDAPAIALPVLLLQGGDDRVVDNVEGLARFFERAGS 257 (298)
T ss_pred CcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhc-ccchhccccccCCEEEEecCCCccccCcHHHHHHHHhcCC
Confidence 11122234444454443321 2 11 1222222222221 12234466789999999999999999 5665555444 6
Q ss_pred CCccEEEcCCCCCCCCCCC-c--chhhHHHHHHhhccCC
Q 028774 155 SVEDFIVLPNVGHCPQDEA-P--HLVNPLVESFVTRHAT 190 (204)
Q Consensus 155 ~~~~~~~~~~~gH~~~~e~-p--~~~~~~i~~fl~~~~~ 190 (204)
++.++++++|+.|.++.|. . +++.+.+.+|+.+...
T Consensus 258 ~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 258 PDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred CCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 7789999999999999874 4 7899999999988764
No 45
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.73 E-value=4.4e-18 Score=120.28 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=60.4
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCC--CccEEEcCCCCCCCCCC-CcchhhHHHHHHhhccCC
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS--VEDFIVLPNVGHCPQDE-APHLVNPLVESFVTRHAT 190 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~~~~~ 190 (204)
...+.++++|+|+++|++|.+++++..+.+.+..+ +.++++++|++|.++.| +++++.+.|.+||.++..
T Consensus 317 ~~~L~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 317 TRNFKSVTVPFMVLHGTADRVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred HhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999988877643 47899999999999877 799999999999998754
No 46
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.71 E-value=3.1e-16 Score=111.83 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=55.9
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
.++++|+|+|+|++|.++|++..+.+.+..++.+++++|++ ++.+.++++++.|.+||.++
T Consensus 352 ~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~~~l~~i~~~---~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 352 RRCPTPMLSGYWKNDPFSPEEDSRLIASSSADGKLLEIPFK---PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred cCCCCcEEEEecCCCCCCCHHHHHHHHHhCCCCeEEEccCC---CccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998988999999999985 56689999999999999875
No 47
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.70 E-value=2.7e-17 Score=113.64 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=49.4
Q ss_pred cCCCC-CCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 123 LLPQV-KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 123 ~~~~i-~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
.+.++ ++|+++|+|++|.++|.+..+.+.+.+++.++++++++||+++.+ +..+.|.+|+.
T Consensus 242 ~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~~~~~~~~~~~gH~~~~~---~~~~~i~~~~~ 303 (306)
T TIGR01249 242 NISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFPEAELKVTNNAGHSAFDP---NNLAALVHALE 303 (306)
T ss_pred hhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCCCCh---HHHHHHHHHHH
Confidence 45566 699999999999999999999999999999999999999998633 23444544443
No 48
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.67 E-value=3.1e-16 Score=109.21 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=52.2
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhcc--CCCccEEEcCCCCCCCCCCC-cchhhHHHHHHhh
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQDEA-PHLVNPLVESFVT 186 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~e~-p~~~~~~i~~fl~ 186 (204)
++|+|+++|++|.+++++..+.+.+. .++.+++++++++|.++.|. ++++.+.|.+||.
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 78999999999999999988887655 36789999999999999885 6889999999985
No 49
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.66 E-value=9e-16 Score=96.53 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=94.7
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|-||||.+++.+|..+| ++++|.++++..... + ...+..+.... ..
T Consensus 90 ~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~---~----~~iie~~l~y~------------------------~~ 136 (243)
T COG1647 90 VGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKS---W----RIIIEGLLEYF------------------------RN 136 (243)
T ss_pred EeecchhHHHHHHHhhCC--ccceeeecCCccccc---c----hhhhHHHHHHH------------------------HH
Confidence 589999999999999999 999999998743211 0 01111111110 00
Q ss_pred cCCCCcccHHHHHHHhccCC--CCchHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhHHHHhhccC--CC
Q 028774 81 YNDTSQVTEELVEKILQPGL--ETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD--SV 156 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~ 156 (204)
+......+.+..+....... .......+..++.. ....+..|..|++++.|++|++++.+.+..+.+.. .+
T Consensus 137 ~kk~e~k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~~ 211 (243)
T COG1647 137 AKKYEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIKD-----ARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDD 211 (243)
T ss_pred hhhccCCCHHHHHHHHHHhhcchHHHHHHHHHHHHH-----HHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCCc
Confidence 00111122222222222222 11122222222221 14557889999999999999999999999888773 35
Q ss_pred ccEEEcCCCCCCCCCC-CcchhhHHHHHHhhc
Q 028774 157 EDFIVLPNVGHCPQDE-APHLVNPLVESFVTR 187 (204)
Q Consensus 157 ~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~~ 187 (204)
.++.+++++||.+..+ ..+.+.+.+..||+.
T Consensus 212 KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 212 KELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred ceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 6899999999998876 578899999999963
No 50
>PRK10985 putative hydrolase; Provisional
Probab=99.65 E-value=9.3e-16 Score=106.71 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=56.4
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCc----c-hhhHHHHHHhhccC
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP----H-LVNPLVESFVTRHA 189 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p----~-~~~~~i~~fl~~~~ 189 (204)
...+.++++|+++|+|++|++++++..+.+.+..+++++++++++||+.++|.. . -.-+.+.+|+....
T Consensus 248 ~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 248 LPLLNQIRKPTLIIHAKDDPFMTHEVIPKPESLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred HHHHhCCCCCEEEEecCCCCCCChhhChHHHHhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 456788999999999999999998888777777889999999999999998842 2 34566778886543
No 51
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.64 E-value=1.5e-15 Score=119.28 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=61.8
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccE-EEcCCCCCCCCCC---CcchhhHHHHHHhhccCCCC
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDF-IVLPNVGHCPQDE---APHLVNPLVESFVTRHATPP 192 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~gH~~~~e---~p~~~~~~i~~fl~~~~~~~ 192 (204)
.+.+|++|+|+|+|++|.+++++..+.+.+.++++++ .+++++||+.++- .++++...|.+||.++....
T Consensus 292 ~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~~ 365 (994)
T PRK07868 292 TLADITCPVLAFVGEVDDIGQPASVRGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGDG 365 (994)
T ss_pred chhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccCC
Confidence 4789999999999999999999999999999999987 6789999997753 57889999999999887544
No 52
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.64 E-value=7e-15 Score=103.45 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=53.0
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCC--ccEEEcCCCCCCCCCCC---cchhhHHHHHHhhc
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV--EDFIVLPNVGHCPQDEA---PHLVNPLVESFVTR 187 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~gH~~~~e~---p~~~~~~i~~fl~~ 187 (204)
.+.++++|+++++|++|.+++++..+.+.+.+++ .++++++ +||...+.. ++++...|.+||.+
T Consensus 281 ~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 281 DLKNIKMPILNIYAERDHLVPPDASKALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred cHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 4668899999999999999999998888887664 4667777 699887654 47899999999975
No 53
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.62 E-value=1.6e-14 Score=105.03 Aligned_cols=55 Identities=24% Similarity=0.183 Sum_probs=50.2
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcc
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPH 175 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~ 175 (204)
...+.+|++|+++|+|++|.++|.+....+.+.+++.+..+++++||.+++++|.
T Consensus 408 ~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 408 RLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred ecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 4567899999999999999999999999998889999999999999999999874
No 54
>PRK05855 short chain dehydrogenase; Validated
Probab=99.61 E-value=1.8e-15 Score=113.39 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=59.7
Q ss_pred CCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCC
Q 028774 124 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 124 ~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
...+++|+++|+|++|.+++++..+.+.+..++.++++++ +||+++.|+|+++++.|.+|+.+...
T Consensus 229 ~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~~~ 294 (582)
T PRK05855 229 ERYTDVPVQLIVPTGDPYVRPALYDDLSRWVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDAVEG 294 (582)
T ss_pred cCCccCceEEEEeCCCcccCHHHhccccccCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHhccC
Confidence 5568999999999999999999988888888988888887 69999999999999999999988654
No 55
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.61 E-value=8.6e-15 Score=99.36 Aligned_cols=181 Identities=17% Similarity=0.139 Sum_probs=105.3
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHh-hcchh-----------------hhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLL-RNTAA-----------------GKL 62 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------------~~~ 62 (204)
||-||||+.|++++..|||+|+++|.+++....... ...+....++.+ ..+.+ .+.
T Consensus 152 vGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~------~ia~~~~~r~AI~~DP~~n~G~Y~~~~~P~~GL~~AR~ 225 (368)
T COG2021 152 VGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQ------NIAFNEVQRQAIEADPDWNGGDYYEGTQPERGLRLARM 225 (368)
T ss_pred eccChHHHHHHHHHHhChHHHhhhheecccccCCHH------HHHHHHHHHHHHHhCCCccCCCccCCCCcchhHHHHHH
Confidence 799999999999999999999999999987532210 000000011110 00100 000
Q ss_pred H-HhhcCCHHHHHHHHHhhc-CCCCc--ccHHHHHHHhc----cCCCCchHHHHHHHHhhcCCCCC-------CccCCCC
Q 028774 63 F-YKMVATSESVRNILCQCY-NDTSQ--VTEELVEKILQ----PGLETGAADVFLEFICYSGGPLP-------EELLPQV 127 (204)
Q Consensus 63 ~-~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i 127 (204)
+ .-...+.+.+...+.... .+... -.....+.|++ .+......+.++.+.......+. ...+.++
T Consensus 226 l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~ald~~D~s~~~~~l~~al~~i 305 (368)
T COG2021 226 LAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRALDYHDVSRGRGDLTAALARI 305 (368)
T ss_pred HHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHhcCCCCCcCcHHHHHhcC
Confidence 0 011122333332222211 01101 01222223322 22222223333333333333332 3348899
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccCCCcc-EEEcC-CCCCCCCCCCcchhhHHHHHHhhc
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFDSVED-FIVLP-NVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~-~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
++|++++.-+.|.++|++..+.+.+.++.+. +.+|+ ..||..++...+.+...|..||+.
T Consensus 306 ~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 306 KAPVLVVGITSDWLFPPELQRALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred ccCEEEEEecccccCCHHHHHHHHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 9999999999999999999999999988776 76654 579999999999999999999975
No 56
>PLN02872 triacylglycerol lipase
Probab=99.59 E-value=7.2e-14 Score=98.82 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=57.6
Q ss_pred cCCCC--CCCeEEEeeCCCCCcchhHHHHhhccCCC-ccEEEcCCCCCC---CCCCCcchhhHHHHHHhhccCC
Q 028774 123 LLPQV--KCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHC---PQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 123 ~~~~i--~~P~lii~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~---~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
.+.++ ++|+++++|++|.+++++..+.+.+.+++ .+++.++++||. ...+.|+++.+.|.+|+++..+
T Consensus 318 ~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 318 DLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred CcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 46677 58999999999999999988888888776 688889999995 4558899999999999986543
No 57
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=97.48 Aligned_cols=66 Identities=30% Similarity=0.542 Sum_probs=54.5
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCC-ccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
......+++|+++++|++|.+.+......+.+..++ .++++++++||+++.++|+.+++.+.+|+.
T Consensus 214 ~~~~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 214 RAALARITVPTLIIHGEDDPVVPAELARRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred chhhccCCCCeEEEecCCCCcCCHHHHHHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 345667889999999999976666655667777775 899999999999999999999999888544
No 58
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=3.6e-14 Score=91.18 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=56.6
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCC-CccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
..+.||+.++.|++|..+..+....|.+... ..++.+++| ||+...++.+++.+.|.+.+...
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~~f~l~~fdG-gHFfl~~~~~~v~~~i~~~l~~~ 236 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDELGAWREHTKGDFTLRVFDG-GHFFLNQQREEVLARLEQHLAHH 236 (244)
T ss_pred CCcCcceEEeccCcchhccHHHHHHHHHhhcCCceEEEecC-cceehhhhHHHHHHHHHHHhhhh
Confidence 5789999999999999999999998888855 789999996 99999999999999999988643
No 59
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.55 E-value=2.3e-14 Score=97.49 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=49.9
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHH------HHhhccC--CCccEEEcCCCCCCCCCCC-cchhhHHHHHHhhc
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELG------RAYGNFD--SVEDFIVLPNVGHCPQDEA-PHLVNPLVESFVTR 187 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~------~~~~~~~--~~~~~~~~~~~gH~~~~e~-p~~~~~~i~~fl~~ 187 (204)
.+.++++|+++++|+.|...+ ... ..+.+.+ ++++++.++++||++..+. ++++.+.|.+||++
T Consensus 202 ~l~~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 202 GLERFQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHHhcCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 355678999999999998763 332 3444443 8899999999999996554 59999999999964
No 60
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.50 E-value=3.7e-12 Score=83.85 Aligned_cols=171 Identities=19% Similarity=0.242 Sum_probs=99.0
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|---|+.|..+||..||+||.+|||+++.+.... +.+.....+.. ..+............++...
T Consensus 127 ~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~g----------wiew~~~K~~s----~~l~~~Gmt~~~~d~ll~H~ 192 (326)
T KOG2931|consen 127 MGVGAGAYILARFALNHPERVLGLVLINCDPCAKG----------WIEWAYNKVSS----NLLYYYGMTQGVKDYLLAHH 192 (326)
T ss_pred ecccccHHHHHHHHhcChhheeEEEEEecCCCCch----------HHHHHHHHHHH----HHHHhhchhhhHHHHHHHHH
Confidence 47778999999999999999999999999754221 11111111110 00111111111111222222
Q ss_pred cCCC-CcccHHHHHHHhcc---CCCCchHHHHHHHHhhcCCCCCCccCC----CCCCCeEEEeeCCCCCcchhHHHHhhc
Q 028774 81 YNDT-SQVTEELVEKILQP---GLETGAADVFLEFICYSGGPLPEELLP----QVKCPVLIAWGDKDPWEPIELGRAYGN 152 (204)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~P~lii~g~~D~~~~~~~~~~~~~ 152 (204)
+... .....+.++.+... ..++..+..+++.+. .+.+...... .++||+|++.|++.+.+..- ..+..
T Consensus 193 Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn--~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~~~v--v~~n~ 268 (326)
T KOG2931|consen 193 FGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYN--GRRDLSIERPKLGTTLKCPVLLVVGDNSPHVSAV--VECNS 268 (326)
T ss_pred hccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhc--CCCCccccCCCcCccccccEEEEecCCCchhhhh--hhhhc
Confidence 2221 11233444444333 333444555554443 2222222222 56799999999998765432 23333
Q ss_pred c--CCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 153 F--DSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 153 ~--~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
. -.+..+..+.+||-.+..++|.++++.+.-|++..-
T Consensus 269 ~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG~G 307 (326)
T KOG2931|consen 269 KLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQGMG 307 (326)
T ss_pred ccCcccceEEEEcccCCcccccCchHHHHHHHHHHccCC
Confidence 3 346788899999999999999999999999998753
No 61
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.48 E-value=2e-13 Score=89.70 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=49.9
Q ss_pred CCCCeEEEeeCCCCCcchhHHHHhhc----cCCCccEEEcCCCCCCCC-CCCcchhhHHHHHHhhccCC
Q 028774 127 VKCPVLIAWGDKDPWEPIELGRAYGN----FDSVEDFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 127 i~~P~lii~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 190 (204)
+++|+|+++|++|..+|.+....+.+ .-.+++++++|++||.+. .+....+.+.+.+||++...
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 78999999999999999887665443 344589999999999555 34556788999999988754
No 62
>PRK11071 esterase YqiA; Provisional
Probab=99.47 E-value=7.5e-13 Score=85.00 Aligned_cols=55 Identities=11% Similarity=-0.104 Sum_probs=46.9
Q ss_pred CCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 127 VKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 127 i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
..+|+++++|++|.++|.+.+..+.+ +++.+.++|++|.. +..+++.+.+.+|+.
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~---~~~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYA---ACRQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHH---hcceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 67889999999999999999988877 45777889999987 444889999999975
No 63
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.47 E-value=2.8e-13 Score=89.83 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=88.8
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|--.||.|..+||.+||++|.+|||+++.+... .+.+.+...+....+. ............+...
T Consensus 104 ~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~----------gw~Ew~~~K~~~~~L~----~~gmt~~~~d~Ll~h~ 169 (283)
T PF03096_consen 104 FGVGAGANILARFALKHPERVLGLILVNPTCTAA----------GWMEWFYQKLSSWLLY----SYGMTSSVKDYLLWHY 169 (283)
T ss_dssp EEETHHHHHHHHHHHHSGGGEEEEEEES---S-------------HHHHHHHHHH-----------CTTS-HHHHHHHHH
T ss_pred EeeccchhhhhhccccCccceeEEEEEecCCCCc----------cHHHHHHHHHhccccc----ccccccchHHhhhhcc
Confidence 4667899999999999999999999999975422 1222222222211110 0011111111111111
Q ss_pred cCCCCc-ccHHHHHHHhcc---CCCCchHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhHHHHhhcc--C
Q 028774 81 YNDTSQ-VTEELVEKILQP---GLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF--D 154 (204)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~--~ 154 (204)
+..... ...+.++.+... ..++.....+.+.+ ..+.+.........||+|++.|+..+....- ..+... -
T Consensus 170 Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy--~~R~DL~~~~~~~~c~vLlvvG~~Sp~~~~v--v~~ns~Ldp 245 (283)
T PF03096_consen 170 FGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSY--NSRTDLSIERPSLGCPVLLVVGDNSPHVDDV--VEMNSKLDP 245 (283)
T ss_dssp S-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHH--HT-----SECTTCCS-EEEEEETTSTTHHHH--HHHHHHS-C
T ss_pred cccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHH--hccccchhhcCCCCCCeEEEEecCCcchhhH--HHHHhhcCc
Confidence 211100 122344333332 23333444444333 3444555666777899999999998765432 233333 3
Q ss_pred CCccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 155 SVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 155 ~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
...++..+++||=.+..|+|+++++.+.-||+..
T Consensus 246 ~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~ 279 (283)
T PF03096_consen 246 TKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGM 279 (283)
T ss_dssp CCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCcccccCcHHHHHHHHHHHccC
Confidence 3578899999999999999999999999999764
No 64
>PRK10566 esterase; Provisional
Probab=99.40 E-value=2.2e-12 Score=86.84 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=47.9
Q ss_pred CCCC-CCCeEEEeeCCCCCcchhHHHHhhccCC------CccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 124 LPQV-KCPVLIAWGDKDPWEPIELGRAYGNFDS------VEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 124 ~~~i-~~P~lii~g~~D~~~~~~~~~~~~~~~~------~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
+.++ ++|+|+++|++|.+++.+..+.+.+.++ ++++..++|+||.+. ....+.+.+||+++
T Consensus 181 ~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~----~~~~~~~~~fl~~~ 248 (249)
T PRK10566 181 LEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT----PEALDAGVAFFRQH 248 (249)
T ss_pred hhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC----HHHHHHHHHHHHhh
Confidence 4455 6899999999999999998888776543 356778999999864 34678888998864
No 65
>PRK13604 luxD acyl transferase; Provisional
Probab=99.40 E-value=1.1e-12 Score=88.80 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=48.7
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCC--CccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS--VEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
+.+.++++|+|+|+|++|.++|.+.++.+.+..+ +.++++++|++|.+.. ++ -.+.+|.+...
T Consensus 196 ~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~~-~~----~~~~~~~~~~~ 260 (307)
T PRK13604 196 NKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIGSSHDLGE-NL----VVLRNFYQSVT 260 (307)
T ss_pred HHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCCCccccCc-ch----HHHHHHHHHHH
Confidence 3355678999999999999999999988888654 7899999999997763 32 23455655543
No 66
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.35 E-value=2.1e-12 Score=83.77 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=56.8
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCc-cEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCC
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATP 191 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~ 191 (204)
.+.+..|+||+|+++|++|.+++....+.+.+..++. +..++.|+||.-. +...++...+..|+......
T Consensus 185 i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~~epl~v~g~gH~~~-~~~~~yi~~l~~f~~~~~~~ 255 (258)
T KOG1552|consen 185 IEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEKVEPLWVKGAGHNDI-ELYPEYIEHLRRFISSVLPS 255 (258)
T ss_pred cCcceeccCCEEEEecccCceecccccHHHHHhccccCCCcEEecCCCccc-ccCHHHHHHHHHHHHHhccc
Confidence 3457788999999999999999999999999887664 7888999999765 44556777888888766543
No 67
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.31 E-value=3.6e-12 Score=78.61 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=33.6
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccCC-CccEEEcCCCCCC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHC 168 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~ 168 (204)
++|+++++|++|..++.+..+.+.+.++ +.++.+++|++|+
T Consensus 104 ~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 104 RIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp TSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred CCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 3499999999999999988888777655 6899999999995
No 68
>PRK11460 putative hydrolase; Provisional
Probab=99.30 E-value=7.2e-12 Score=83.11 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=42.9
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccC----CCccEEEcCCCCCCCCCCCcchhhHHHHHHh
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFD----SVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 185 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl 185 (204)
+.|+++++|++|.++|.+..+.+.+.+ .+++++.++++||.+..+.-+.+.+.|.++|
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999998877766543 3567888999999986544444444444444
No 69
>PLN02442 S-formylglutathione hydrolase
Probab=99.28 E-value=2e-11 Score=83.43 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEeeCCCCCcchh-----HHHHhhccCCCccEEEcCCCCCCCC
Q 028774 124 LPQVKCPVLIAWGDKDPWEPIE-----LGRAYGNFDSVEDFIVLPNVGHCPQ 170 (204)
Q Consensus 124 ~~~i~~P~lii~g~~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~gH~~~ 170 (204)
+...++|+++++|++|.+++.. ..+.+.+.-.++++.+++|.+|..+
T Consensus 213 ~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 213 FNDVSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred ccccCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHH
Confidence 3456789999999999988852 3344555545588999999999755
No 70
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.23 E-value=6.7e-11 Score=77.84 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=40.3
Q ss_pred CCCeEEEeeCCCCCcchhHHHHh----hccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAY----GNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~----~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
++|+++++|++|+++|.+..+.. .+...+++++.++|.||.+. .+..+.+.+||+++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEKH 215 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhhh
Confidence 67999999999999998766654 44455789999999999664 45666788888764
No 71
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.17 E-value=1.8e-10 Score=86.74 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=55.5
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHHHHhhcc----CCCccEEEcCCCCCCCCC-CCcchhhHHHHHHhhccCC
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQD-EAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~~~~~ 190 (204)
...++++|+|+|||++|.-++.+.+..+.+. ..+++++++|+.||.+-- ++-..+.+.+.+|++++..
T Consensus 546 ~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 546 YADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred hhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999998877665443 456889999999998876 5567788899999988754
No 72
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.16 E-value=2.5e-09 Score=77.99 Aligned_cols=168 Identities=11% Similarity=0.045 Sum_probs=86.9
Q ss_pred CccchhHHHHHH----HHhhccc-hhcceEEeecccchhccccCC-CCCCchhHHHHHHhhc-c----hhhhhHHhhcCC
Q 028774 1 MVSEQTGLVGLQ----AAVMEPE-ICRGMILLNISLRMLHIKKQP-WYGRPLIRSFQNLLRN-T----AAGKLFYKMVAT 69 (204)
Q Consensus 1 vGhS~Gg~ia~~----~a~~~p~-~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~ 69 (204)
+|||+||.++.. +|+++++ +|++++++.++.......... +............... . ......+.....
T Consensus 293 ~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP 372 (560)
T TIGR01839 293 LGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRP 372 (560)
T ss_pred EEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCc
Confidence 699999999997 8889986 899999999886543221111 1111111111111111 0 111112233333
Q ss_pred HHHHHHHHHhhc-CCCCcccHHHHHHHhccCCC-CchH-HHHHHHHhhcC--C------CCCCccCCCCCCCeEEEeeCC
Q 028774 70 SESVRNILCQCY-NDTSQVTEELVEKILQPGLE-TGAA-DVFLEFICYSG--G------PLPEELLPQVKCPVLIAWGDK 138 (204)
Q Consensus 70 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~--~------~~~~~~~~~i~~P~lii~g~~ 138 (204)
...+...+...+ ........+ +..+...... ++.. ..+..++.... . ....-.+.+|+||++++.|++
T Consensus 373 ~dliw~y~v~~yllg~~p~~fd-ll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~ 451 (560)
T TIGR01839 373 NDLIWNYWVNNYLLGNEPPAFD-ILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTN 451 (560)
T ss_pred hhhhHHHHHHHhhcCCCcchhh-HHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCc
Confidence 333333332222 222222222 2233222222 2222 22333221111 0 001235789999999999999
Q ss_pred CCCcchhHHHHhhccCC-CccEEEcCCCCCCCC
Q 028774 139 DPWEPIELGRAYGNFDS-VEDFIVLPNVGHCPQ 170 (204)
Q Consensus 139 D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~ 170 (204)
|.++|.+....+.+.+. +.+++..+ +||..-
T Consensus 452 DHIvPw~s~~~~~~l~gs~~~fvl~~-gGHIgg 483 (560)
T TIGR01839 452 DHITPWDAVYRSALLLGGKRRFVLSN-SGHIQS 483 (560)
T ss_pred CCcCCHHHHHHHHHHcCCCeEEEecC-CCcccc
Confidence 99999999988888755 45666666 589643
No 73
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.16 E-value=1e-10 Score=73.84 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=51.4
Q ss_pred CCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 127 VKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 127 i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
.+||||-++|..|.++|.+.++.+++.+|+-++.++||+.|..... .++.......|.....
T Consensus 198 ~~C~VLTvhGs~D~IVPve~AkefAk~i~nH~L~iIEgADHnyt~~-q~~l~~lgl~f~k~r~ 259 (269)
T KOG4667|consen 198 KQCRVLTVHGSEDEIVPVEDAKEFAKIIPNHKLEIIEGADHNYTGH-QSQLVSLGLEFIKTRI 259 (269)
T ss_pred ccCceEEEeccCCceeechhHHHHHHhccCCceEEecCCCcCccch-hhhHhhhcceeEEeee
Confidence 4799999999999999999999999999999999999999976643 3445556666665443
No 74
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.08 E-value=3.3e-11 Score=78.97 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=48.4
Q ss_pred CCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCCCC
Q 028774 124 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPPA 193 (204)
Q Consensus 124 ~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~~~ 193 (204)
+-...+|-++|.+..|.+-..-. .-+.-...++.+++.+||+++.+.|.+++..+..|+.++.-..+
T Consensus 266 Fl~~p~~klLilAg~d~LDkdLt---iGQMQGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn~~~~~ 332 (343)
T KOG2564|consen 266 FLGLPVPKLLILAGVDRLDKDLT---IGQMQGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRNRFAEP 332 (343)
T ss_pred hhCCCccceeEEecccccCccee---eeeeccceeeeeecccCceeccCCcchHHHHHHHHHhhhccccc
Confidence 44567888888877776422111 12222346788999999999999999999999999998864443
No 75
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.07 E-value=1.5e-09 Score=76.66 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=52.8
Q ss_pred cCCCCC-CCeEEEeeCCCCCcchhHHHHhhccC---CC--ccEEEcCCCCCCCCCC---CcchhhHHHHHHhhcc
Q 028774 123 LLPQVK-CPVLIAWGDKDPWEPIELGRAYGNFD---SV--EDFIVLPNVGHCPQDE---APHLVNPLVESFVTRH 188 (204)
Q Consensus 123 ~~~~i~-~P~lii~g~~D~~~~~~~~~~~~~~~---~~--~~~~~~~~~gH~~~~e---~p~~~~~~i~~fl~~~ 188 (204)
.+.+|+ +|++.+.|++|.++++...+.+.+.+ +. .+....+++||+-.+- -++++...|.+||.++
T Consensus 332 dl~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 332 DPGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred cHHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 467898 99999999999999999988888763 42 3456677899986654 4678889999999763
No 76
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.07 E-value=3.4e-10 Score=71.17 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=37.6
Q ss_pred CCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCc
Q 028774 127 VKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 174 (204)
Q Consensus 127 i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p 174 (204)
+.+|.++|.+++|+++|.+.++.+++.. +++++.++++||+.-.+--
T Consensus 113 l~~~~~viaS~nDp~vp~~~a~~~A~~l-~a~~~~~~~~GHf~~~~G~ 159 (171)
T PF06821_consen 113 LPFPSIVIASDNDPYVPFERAQRLAQRL-GAELIILGGGGHFNAASGF 159 (171)
T ss_dssp HHCCEEEEEETTBSSS-HHHHHHHHHHH-T-EEEEETS-TTSSGGGTH
T ss_pred cCCCeEEEEcCCCCccCHHHHHHHHHHc-CCCeEECCCCCCcccccCC
Confidence 4567799999999999999999999887 5899999999999876543
No 77
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.06 E-value=1.9e-09 Score=73.56 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=28.5
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+||||||.+++.++.++|+++++++++++.
T Consensus 143 ~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~ 172 (275)
T TIGR02821 143 TGHSMGGHGALVIALKNPDRFKSVSAFAPI 172 (275)
T ss_pred EEEChhHHHHHHHHHhCcccceEEEEECCc
Confidence 599999999999999999999999999886
No 78
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.03 E-value=6.7e-10 Score=73.30 Aligned_cols=64 Identities=30% Similarity=0.431 Sum_probs=40.7
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHH----hhccCCCccEEEcCCCCCCCCCCCc--------chhhHHHHHHhhcc
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRA----YGNFDSVEDFIVLPNVGHCPQDEAP--------HLVNPLVESFVTRH 188 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~----~~~~~~~~~~~~~~~~gH~~~~e~p--------~~~~~~i~~fl~~~ 188 (204)
.++++|+++++|++|+.++.+..+. +.+.-...++++++|++|-+..... ++..+.+.+||+++
T Consensus 142 ~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~ 217 (218)
T PF01738_consen 142 PKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRH 217 (218)
T ss_dssp GG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC-
T ss_pred cccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999886444 3344567899999999997775433 23445677788765
No 79
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.03 E-value=1.4e-10 Score=75.85 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=27.1
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHH-----HHhhcc-CC-CccEEEcCCCCCCCC
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELG-----RAYGNF-DS-VEDFIVLPNVGHCPQ 170 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~-----~~~~~~-~~-~~~~~~~~~~gH~~~ 170 (204)
.++++++|+|+|.|++|.+.|.... +++.+. .+ +.+...++++||++.
T Consensus 110 pvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i~ 164 (213)
T PF08840_consen 110 PVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLIE 164 (213)
T ss_dssp -GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S---
T ss_pred cHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCceec
Confidence 3668899999999999998875433 234444 33 478888999999853
No 80
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.00 E-value=2.9e-09 Score=71.95 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=55.5
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhc-cCCCccEEEcCCCCCCCCCC----Ccc-hhhHHHHHHhhcc
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGN-FDSVEDFIVLPNVGHCPQDE----APH-LVNPLVESFVTRH 188 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~gH~~~~e----~p~-~~~~~i~~fl~~~ 188 (204)
...+.+|.+|+|||++.+|++++++....... ..|++.+..-+.+||..++. +|. -.-+.+.+|++..
T Consensus 267 ~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 267 LPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred cccccccccceEEEecCCCCCCChhhCCcchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 56789999999999999999999987776666 68899999999999998877 333 4456777887654
No 81
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.00 E-value=5e-10 Score=70.97 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=55.7
Q ss_pred CCCCCCCeEEEeeCCCCCcchhHHHHhhccCCC--ccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCCC
Q 028774 124 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV--EDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPP 192 (204)
Q Consensus 124 ~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~~ 192 (204)
+.+.++|.|+|.|..|.++||-..+.+.+..|. .++.++|++.|.-.+- -+-..+.|.+||.+....+
T Consensus 217 i~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i-~dGYfq~i~dFlaE~~~~~ 286 (300)
T KOG4391|consen 217 IGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWI-CDGYFQAIEDFLAEVVKSS 286 (300)
T ss_pred hccccCceEEeecCccccCCcHHHHHHHHhCchhhhhheeCCCCccCceEE-eccHHHHHHHHHHHhccCC
Confidence 446688999999999999999999999988764 5788999999964432 3567889999999987654
No 82
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.97 E-value=5.5e-09 Score=72.34 Aligned_cols=63 Identities=29% Similarity=0.403 Sum_probs=44.6
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCC-CccEEEcCCCCCCCCCCCcchh-hHHHHHHhhcc
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-VEDFIVLPNVGHCPQDEAPHLV-NPLVESFVTRH 188 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~e~p~~~-~~~i~~fl~~~ 188 (204)
....+|+||+++-.|-.|.++||...-...+.++ ..++.+++..|| |.+.++ .+...+||.++
T Consensus 256 nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~~K~l~vyp~~~H----e~~~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 256 NFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPGPKELVVYPEYGH----EYGPEFQEDKQLNFLKEH 320 (320)
T ss_dssp HHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--SSEEEEEETT--S----STTHHHHHHHHHHHHHH-
T ss_pred HHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCCCeeEEeccCcCC----CchhhHHHHHHHHHHhcC
Confidence 3456789999999999999999999888888865 468889999999 555566 77888888764
No 83
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.95 E-value=5.8e-09 Score=70.58 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=80.6
Q ss_pred CccchhHHHHHHHHhhcc---chhcceEEeecccchhccccCCCCCCchhHHHHHHhhc-chhh---hh--HHhhcCCHH
Q 028774 1 MVSEQTGLVGLQAAVMEP---EICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRN-TAAG---KL--FYKMVATSE 71 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p---~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~--~~~~~~~~~ 71 (204)
||||.|+.++++...+++ .+|.+++++-|........ +....+...+.. .... .. .+. ..-+.
T Consensus 89 iGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~S-------p~G~~l~~~~~~~~~~~~~~~~~~~l~-~~lP~ 160 (266)
T PF10230_consen 89 IGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKS-------PNGRRLTPLLFSPPPLVWLASFLSFLL-SLLPE 160 (266)
T ss_pred EeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCC-------chhHHHHHHHhhccHHHHHHHHHHHHH-HHCCH
Confidence 699999999999999999 7899999999875332111 111111111111 1000 00 111 11233
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHhccCCCCchHHHHHHHHh----hcCCCCCCccCCCC---CCCeEEEeeCCCCCcch
Q 028774 72 SVRNILCQCYNDTSQVTEELVEKILQPGLETGAADVFLEFIC----YSGGPLPEELLPQV---KCPVLIAWGDKDPWEPI 144 (204)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i---~~P~lii~g~~D~~~~~ 144 (204)
.+..++........ +............+......+.+.. .....+..+.+... ..++.+.+|.+|.|+|.
T Consensus 161 ~~~~~lv~~~~~~~---~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~kl~f~fg~~D~Wvp~ 237 (266)
T PF10230_consen 161 SVLRWLVRWVMGFP---PPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDKLWFYFGQNDHWVPN 237 (266)
T ss_pred HHHHHHHHHHcCCC---hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCEEEEEEeCCCCCCCH
Confidence 33333333222221 1233333333334444443333321 11111101112222 57899999999999999
Q ss_pred hHHHHhhccCCC--ccEEE-cCCCCCC
Q 028774 145 ELGRAYGNFDSV--EDFIV-LPNVGHC 168 (204)
Q Consensus 145 ~~~~~~~~~~~~--~~~~~-~~~~gH~ 168 (204)
+..+.+.+..|+ .++.+ .+|.-|.
T Consensus 238 ~~~~~l~~~~~~~~~~~~v~~~~i~Ha 264 (266)
T PF10230_consen 238 ETRDELIERYPGHEPDVVVDEEGIPHA 264 (266)
T ss_pred HHHHHHHHHcCCCCCeEEEecCCCCCC
Confidence 999999888873 23322 2555553
No 84
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.93 E-value=2.3e-08 Score=69.81 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=99.6
Q ss_pred CccchhHHHHHHHHhhccch-hcceEEeecccchhccccCCCCCCc-hhHHHHHHhh-cch----hhhhHHhhcCCHHHH
Q 028774 1 MVSEQTGLVGLQAAVMEPEI-CRGMILLNISLRMLHIKKQPWYGRP-LIRSFQNLLR-NTA----AGKLFYKMVATSESV 73 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~ 73 (204)
+|||.||+++..+++.++.+ |++++++.+............+... ....+...+. ... .....+...+....+
T Consensus 186 iGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~~~g~lpg~~ma~~F~mLrpndli 265 (445)
T COG3243 186 IGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIVQKGILPGWYMAIVFFLLRPNDLI 265 (445)
T ss_pred eeEecchHHHHHHHHhhhhcccccceeeecchhhccccccccccCHHHHHHHHhhhhhccCCChHHHHHHHHhcCccccc
Confidence 69999999999999999887 9999999887554432222211111 1111111111 111 111122223333333
Q ss_pred HHHHHhhcCCC-CcccHHHHHHHhccCCCCch-HHHHH-HHHhh---cCC----CCCCccCCCCCCCeEEEeeCCCCCcc
Q 028774 74 RNILCQCYNDT-SQVTEELVEKILQPGLETGA-ADVFL-EFICY---SGG----PLPEELLPQVKCPVLIAWGDKDPWEP 143 (204)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~---~~~----~~~~~~~~~i~~P~lii~g~~D~~~~ 143 (204)
...+...+... ....-+......+.-..++. ...++ +++.. ... ....-.+.+|+||++++.|++|.+.|
T Consensus 266 w~~fV~nyl~ge~pl~fdllyWn~dst~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~~VdL~~It~pvy~~a~~~DhI~P 345 (445)
T COG3243 266 WNYFVNNYLDGEQPLPFDLLYWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGTMVDLGDITCPVYNLAAEEDHIAP 345 (445)
T ss_pred hHHHHHHhcCCCCCCchhHHHhhCCCccCchHHHHHHHHHHHHhChhhccceEECCEEechhhcccceEEEeecccccCC
Confidence 33333333332 22332333332222222221 11222 22211 000 11123578999999999999999999
Q ss_pred hhHHHHhhccCCC-ccEEEcCCCCCCCCCCC-cch--------hhHHHHHHhhccCC
Q 028774 144 IELGRAYGNFDSV-EDFIVLPNVGHCPQDEA-PHL--------VNPLVESFVTRHAT 190 (204)
Q Consensus 144 ~~~~~~~~~~~~~-~~~~~~~~~gH~~~~e~-p~~--------~~~~i~~fl~~~~~ 190 (204)
........+.+++ ++++..+ +||...+-+ |.. .-.....|+.+...
T Consensus 346 ~~Sv~~g~~l~~g~~~f~l~~-sGHIa~vVN~p~~~k~~~w~n~~~~~~~Wl~~a~~ 401 (445)
T COG3243 346 WSSVYLGARLLGGEVTFVLSR-SGHIAGVVNPPGNAKYQYWTNLPADAEAWLSGAKE 401 (445)
T ss_pred HHHHHHHHHhcCCceEEEEec-CceEEEEeCCcchhhhhcCCCCcchHHHHHHhhcc
Confidence 9998888888887 4455554 799765443 211 22356677765543
No 85
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.92 E-value=1.7e-08 Score=64.32 Aligned_cols=53 Identities=13% Similarity=-0.088 Sum_probs=37.1
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHh
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFV 185 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl 185 (204)
..+++++.++.|.+++...+ .+...++..++.+|++|-+. +=++....|.+|+
T Consensus 134 ~~~~lvll~~~DEvLd~~~a---~~~~~~~~~~i~~ggdH~f~--~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 134 PERYLVLLQTGDEVLDYREA---VAKYRGCAQIIEEGGDHSFQ--DFEEYLPQIIAFL 186 (187)
T ss_pred CccEEEEEecCCcccCHHHH---HHHhcCceEEEEeCCCCCCc--cHHHHHHHHHHhh
Confidence 56899999999999988543 33334555666788788654 3456666777776
No 86
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.90 E-value=2.9e-08 Score=69.94 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=75.2
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|.||||.+|.++|..+++|++++|.++++.... .......... +......+...
T Consensus 266 ~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~------------ft~~~~~~~~-------------P~my~d~LA~r 320 (411)
T PF06500_consen 266 WGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHF------------FTDPEWQQRV-------------PDMYLDVLASR 320 (411)
T ss_dssp EEETHHHHHHHHHHHHTTTT-SEEEEES---SCG------------GH-HHHHTTS--------------HHHHHHHHHH
T ss_pred EEeccchHHHHHHHHhcccceeeEeeeCchHhhh------------hccHHHHhcC-------------CHHHHHHHHHH
Confidence 5899999999999999999999999999874211 1111110000 11111222222
Q ss_pred cCCCCcccHHHHHHHhccCCCCchHHHHHHHHhhcCCCCCCccC--CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCcc
Q 028774 81 YNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELL--PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED 158 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~ 158 (204)
+.... .+.+........+... ....+ ++.++|+|.+.|++|+++|.+..+.+.....+.+
T Consensus 321 lG~~~-~~~~~l~~el~~~SLk-----------------~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~~s~~gk 382 (411)
T PF06500_consen 321 LGMAA-VSDESLRGELNKFSLK-----------------TQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAESSTDGK 382 (411)
T ss_dssp CT-SC-E-HHHHHHHGGGGSTT-----------------TTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHHTBTT-E
T ss_pred hCCcc-CCHHHHHHHHHhcCcc-----------------hhccccCCCCCcceEEeecCCCCCCCHHHHHHHHhcCCCCc
Confidence 22111 1122221111111110 02234 6788999999999999999999999888877778
Q ss_pred EEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 159 FIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 159 ~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
...++... ++ ..=+.-...+.+||++.
T Consensus 383 ~~~~~~~~--~~-~gy~~al~~~~~Wl~~~ 409 (411)
T PF06500_consen 383 ALRIPSKP--LH-MGYPQALDEIYKWLEDK 409 (411)
T ss_dssp EEEE-SSS--HH-HHHHHHHHHHHHHHHHH
T ss_pred eeecCCCc--cc-cchHHHHHHHHHHHHHh
Confidence 88887544 11 22235667778888653
No 87
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.83 E-value=2.9e-08 Score=61.91 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=49.8
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
....+|.++|+|+.|.+++......+++- ...+++.+++++||.+ .+-+.+.+.|.+|+.
T Consensus 146 ~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-~~~~~i~i~~a~HFF~-gKl~~l~~~i~~~l~ 205 (210)
T COG2945 146 APCPSPGLVIQGDADDVVDLVAVLKWQES-IKITVITIPGADHFFH-GKLIELRDTIADFLE 205 (210)
T ss_pred cCCCCCceeEecChhhhhcHHHHHHhhcC-CCCceEEecCCCceec-ccHHHHHHHHHHHhh
Confidence 34567999999999999988887777776 4578899999999988 456788899999985
No 88
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.81 E-value=3e-09 Score=71.75 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=12.7
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHH-----HhhccCCC----ccEEEcCCCCCCCCCCCc----chhhHHHHHHhh
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGR-----AYGNFDSV----EDFIVLPNVGHCPQDEAP----HLVNPLVESFVT 186 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~-----~~~~~~~~----~~~~~~~~~gH~~~~e~p----~~~~~~i~~fl~ 186 (204)
...+..+++|+|++.+++|..+|...-+ ++++..+. ..-.+|||++|.+--+.. +.+.+.+..||+
T Consensus 225 ~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 225 KKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp HHTGGG--S-EEEEEE--TT-----------------------------------------------------------
T ss_pred HHHhccCCCceEEEecCCCceecccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 4557788889999999999999875432 23332221 123489999998875443 356777777764
No 89
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.80 E-value=9.6e-08 Score=65.66 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=48.5
Q ss_pred CCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCC-CCCCCcchhhHHHHHHhh
Q 028774 129 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC-PQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~-~~~e~p~~~~~~i~~fl~ 186 (204)
-.+.++.+++|.++|......+.+..|++++..++| ||. .++-+.+.|.+.|.+=++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v~~Lq~~WPGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGVLSLQEIWPGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CcEEEEEecCceEechhhcchHHHhCCCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 347889999999999988889999999999999997 996 446678888888887664
No 90
>COG0400 Predicted esterase [General function prediction only]
Probab=98.78 E-value=1.9e-08 Score=64.96 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=70.9
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQC 80 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
+|+|-||.+++.+..++|+.++++|++.+......
T Consensus 104 ~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~--------------------------------------------- 138 (207)
T COG0400 104 IGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP--------------------------------------------- 138 (207)
T ss_pred EecChHHHHHHHHHHhCchhhccchhcCCcCCCCC---------------------------------------------
Confidence 59999999999999999999999999998632110
Q ss_pred cCCCCcccHHHHHHHhccCCCCchHHHHHHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhHHHHhhcc----CCC
Q 028774 81 YNDTSQVTEELVEKILQPGLETGAADVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF----DSV 156 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~~ 156 (204)
...-..-..|+++++|+.|+++|.....++.+. ..+
T Consensus 139 ----------------------------------------~~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~ 178 (207)
T COG0400 139 ----------------------------------------ELLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGAD 178 (207)
T ss_pred ----------------------------------------ccccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCC
Confidence 000011246999999999999998777665544 456
Q ss_pred ccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 157 EDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 157 ~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
+++..++ .||.+.. +-.+.+.+|+.+
T Consensus 179 v~~~~~~-~GH~i~~----e~~~~~~~wl~~ 204 (207)
T COG0400 179 VEVRWHE-GGHEIPP----EELEAARSWLAN 204 (207)
T ss_pred EEEEEec-CCCcCCH----HHHHHHHHHHHh
Confidence 7888898 6996654 444555567654
No 91
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.77 E-value=9e-08 Score=63.64 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=28.3
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccchh
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRML 34 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 34 (204)
+|||.||-.|+.+|..+| +.++++++|++...
T Consensus 109 ~gHSrGcenal~la~~~~--~~g~~lin~~G~r~ 140 (297)
T PF06342_consen 109 LGHSRGCENALQLAVTHP--LHGLVLINPPGLRP 140 (297)
T ss_pred EEeccchHHHHHHHhcCc--cceEEEecCCcccc
Confidence 699999999999999997 78999999986543
No 92
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=98.75 E-value=1.8e-07 Score=65.72 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=50.3
Q ss_pred CCccCCCCCCCeEEEeeCCCCCcchhHH-HHhhccCCCccEEEcCCCCCCCCCCC----cchhhHH-HHHHhhcc
Q 028774 120 PEELLPQVKCPVLIAWGDKDPWEPIELG-RAYGNFDSVEDFIVLPNVGHCPQDEA----PHLVNPL-VESFVTRH 188 (204)
Q Consensus 120 ~~~~~~~i~~P~lii~g~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~gH~~~~e~----p~~~~~~-i~~fl~~~ 188 (204)
....+.+|++|+|+|.+.+|+++|++.. .......|++-+++-..+||..++|. +....+. +.+|+...
T Consensus 314 s~~~v~~I~VP~L~ina~DDPv~p~~~ip~~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 314 SSNYVDKIKVPLLCINAADDPVVPEEAIPIDDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred hhhhcccccccEEEEecCCCCCCCcccCCHHHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 3567889999999999999999998643 23344467888888788899999886 2333444 66666543
No 93
>PLN00021 chlorophyllase
Probab=98.73 E-value=9.5e-08 Score=66.17 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=26.8
Q ss_pred CccchhHHHHHHHHhhccc-----hhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPE-----ICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~-----~v~~lvl~~~~ 30 (204)
+||||||.+++.+|..+|+ +|+++|+++|.
T Consensus 131 ~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv 165 (313)
T PLN00021 131 AGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPV 165 (313)
T ss_pred EEECcchHHHHHHHhhccccccccceeeEEeeccc
Confidence 5999999999999999875 68899999886
No 94
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.73 E-value=7.7e-08 Score=55.36 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCC
Q 028774 127 VKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 127 i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
-..|+|++.++.|+.+|.+.++.+.+.+++++++.+++.||........-+.+.+.+||..-.-
T Consensus 33 ~~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~G~l 96 (103)
T PF08386_consen 33 GAPPILVLGGTHDPVTPYEGARAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLDGTL 96 (103)
T ss_pred CCCCEEEEecCcCCCCcHHHHHHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHcCCC
Confidence 3589999999999999999999999999999999999999999875556677888899986543
No 95
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.70 E-value=1.2e-07 Score=63.07 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=42.9
Q ss_pred CCCeEEEeeCCCCCcchh---HHHHhhccCC-CccEEEcCCCCCCCCCC-CcchhhHHHHHHh
Q 028774 128 KCPVLIAWGDKDPWEPIE---LGRAYGNFDS-VEDFIVLPNVGHCPQDE-APHLVNPLVESFV 185 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~---~~~~~~~~~~-~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl 185 (204)
.+|.++.....|...... ....+.+..+ ..+++.++| +|+-++. +..++++.|.++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~v~G-~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRLEEADRWWDYTSGDVEVHDVPG-DHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCGGHHCHHHGCBSSSEEEEEESS-ETTGHHSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhhhhHHHHHHhcCCCcEEEEEcC-CCcEecchHHHHHHHHHhccC
Confidence 567889989888877665 3334666654 467888996 9998887 7778888888875
No 96
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.67 E-value=1.6e-07 Score=57.84 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=46.3
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCC---CcchhhHHHHHHhhc
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDE---APHLVNPLVESFVTR 187 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e---~p~~~~~~i~~fl~~ 187 (204)
+..-|.+++..++|++++.+.++.+++... +.++.+.++||+.-.+ .-.+....+.+|+.+
T Consensus 115 ~lpfps~vvaSrnDp~~~~~~a~~~a~~wg-s~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 115 PLPFPSVVVASRNDPYVSYEHAEDLANAWG-SALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred cCCCceeEEEecCCCCCCHHHHHHHHHhcc-HhheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 455699999999999999999999998875 6777788889976543 334555566666654
No 97
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=56.47 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=45.9
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCC----------CcchhhHHHHHHhhcc
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDE----------APHLVNPLVESFVTRH 188 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e----------~p~~~~~~i~~fl~~~ 188 (204)
+.+..+++|++|.+|+.|.+-..+.... ....+..++++++++.|.+--. +-...++.|..|..+.
T Consensus 136 ~HL~gl~tPtli~qGtrD~fGtr~~Va~-y~ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~l 211 (213)
T COG3571 136 EHLTGLKTPTLITQGTRDEFGTRDEVAG-YALSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARRL 211 (213)
T ss_pred hhccCCCCCeEEeecccccccCHHHHHh-hhcCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhhc
Confidence 4467789999999999999877765532 2335668999999999964321 2234556666776654
No 98
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.56 E-value=2.1e-07 Score=61.22 Aligned_cols=31 Identities=10% Similarity=-0.116 Sum_probs=28.5
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
+|||+||.+++.++.++|+++.+++.+++..
T Consensus 100 ~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 100 TGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred EEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 5999999999999999999999999988763
No 99
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.56 E-value=5.4e-08 Score=63.85 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=33.1
Q ss_pred CCCCCCCeEEEeeCCCCCcchhHHHHhhccCCC-ccEEEcCCCCCCCCCCC
Q 028774 124 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSV-EDFIVLPNVGHCPQDEA 173 (204)
Q Consensus 124 ~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~gH~~~~e~ 173 (204)
-.+|++|+|-|+|++|.+++++..+.+.+.+.+ .+++..++ ||.++...
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~~~v~~h~g-GH~vP~~~ 206 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPERSEALAEMFDPDARVIEHDG-GHHVPRKK 206 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HHHHHHHHHHHHHHEEEEEESS-SSS----H
T ss_pred cccCCCCeEEEEeCCCCCcchHHHHHHHHhccCCcEEEEECC-CCcCcCCh
Confidence 346789999999999999999888888888766 77778885 99887653
No 100
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.51 E-value=9.5e-07 Score=58.83 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=47.6
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhcc----CCCccEEEcCCCCCCCCCCC-----------cchhhHHHHHHhhccC
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQDEA-----------PHLVNPLVESFVTRHA 189 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~e~-----------p~~~~~~i~~fl~~~~ 189 (204)
.++++|++++.|+.|..++....+.+.+. ...+++.+++++.|-++-+. .+.-.+.+.+||++..
T Consensus 155 ~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~ 234 (236)
T COG0412 155 PKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLL 234 (236)
T ss_pred ccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999998866665544 23578899999889777442 1344566777777654
No 101
>PRK10162 acetyl esterase; Provisional
Probab=98.50 E-value=1.6e-06 Score=60.60 Aligned_cols=61 Identities=18% Similarity=0.106 Sum_probs=42.9
Q ss_pred CCeEEEeeCCCCCcchh--HHHHhhccCCCccEEEcCCCCCCCCCC-----CcchhhHHHHHHhhccC
Q 028774 129 CPVLIAWGDKDPWEPIE--LGRAYGNFDSVEDFIVLPNVGHCPQDE-----APHLVNPLVESFVTRHA 189 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~--~~~~~~~~~~~~~~~~~~~~gH~~~~e-----~p~~~~~~i~~fl~~~~ 189 (204)
.|++|++|+.|.+.+.. ..+.+.+.--.+++++++|..|..... ..++..+.+.+||++..
T Consensus 249 Pp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~ 316 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQL 316 (318)
T ss_pred CCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHh
Confidence 59999999999987532 334455554468999999999965422 23466677788887653
No 102
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.43 E-value=2.2e-06 Score=66.42 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=47.0
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhcc----CCCccEEEcCCCCCCCC-CCCcchhhHHHHHHhhccCC
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQ-DEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~~~ 190 (204)
...+.+|++|+|+|+|.+|..+++.....+.+. -...++.+.+ ++|... ...+.++.+.+.+|+++...
T Consensus 448 ~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 448 LKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTHKLL 521 (767)
T ss_pred hhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHhccc
Confidence 345678999999999999999987655443332 2345565555 588644 33456777888888877643
No 103
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.40 E-value=2.2e-06 Score=57.41 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCCeEEEeeC------CCCCcchhHHHHhhccCC----CccEEEcCC--CCCCCCCCCcchhhHHHHHHhh
Q 028774 128 KCPVLIAWGD------KDPWEPIELGRAYGNFDS----VEDFIVLPN--VGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 128 ~~P~lii~g~------~D~~~~~~~~~~~~~~~~----~~~~~~~~~--~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
++.+|-|.|. .|..+|...+..+...+. ..+-.++.| +.|.-..|++ +|.+.|.+||-
T Consensus 184 ~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FLw 253 (255)
T PF06028_consen 184 NIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFLW 253 (255)
T ss_dssp T-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHHC
T ss_pred CeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHhc
Confidence 5689999998 788999887776655543 334455654 6798777776 67789999984
No 104
>PRK10115 protease 2; Provisional
Probab=98.39 E-value=4.6e-06 Score=64.11 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=28.3
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
+|.|.||.++...+.++|++++++|...|..
T Consensus 529 ~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~ 559 (686)
T PRK10115 529 MGGSAGGMLMGVAINQRPELFHGVIAQVPFV 559 (686)
T ss_pred EEECHHHHHHHHHHhcChhheeEEEecCCch
Confidence 4899999999999999999999999998874
No 105
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.33 E-value=1.9e-05 Score=57.20 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=29.1
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccch
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRM 33 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 33 (204)
||.+.||..++.+|+.+|+.+..+|+.+++...
T Consensus 145 iGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsy 177 (581)
T PF11339_consen 145 IGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSY 177 (581)
T ss_pred EeccHHHHHHHHHHhcCcCccCceeecCCCccc
Confidence 689999999999999999999999988877543
No 106
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=7.7e-06 Score=54.05 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=51.1
Q ss_pred eEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCC-CCCCCcchhhHHHHHHhhccCC
Q 028774 131 VLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHC-PQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 131 ~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~-~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
+.++.+++|..+|......+++..|++++..++ +||. ..+-+.+.+.+.|.+-|++...
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~~k 368 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRLDK 368 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHHhhhh
Confidence 577789999999998888999999999999999 5996 4567889999999999988763
No 107
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.32 E-value=3.5e-06 Score=59.96 Aligned_cols=69 Identities=19% Similarity=0.042 Sum_probs=54.3
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEE---cCCCCCCCC---CCCcchhhHHHHHHhhccC
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIV---LPNVGHCPQ---DEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~---~~~~gH~~~---~e~p~~~~~~i~~fl~~~~ 189 (204)
.-.+..+++|+.+.+|++|.+..++..+.+....+++.... +++-.|+=+ .+.++++.+.|.+.++...
T Consensus 325 ~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 325 EYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred CCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 44577889999999999999999999887766666554432 788888533 4678999999999988665
No 108
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.29 E-value=1e-06 Score=56.95 Aligned_cols=64 Identities=20% Similarity=0.382 Sum_probs=51.7
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEE--EcCC----CCCCCCCCCc-chhhHHHHHHh
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFI--VLPN----VGHCPQDEAP-HLVNPLVESFV 185 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~----~gH~~~~e~p-~~~~~~i~~fl 185 (204)
+....+++|++.+...+|+++|+...+.+.+..+|+.+. .++. -||+-...+| |.+-+.+++|+
T Consensus 210 q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 210 QVYAAVRTPITFSRALDDPWAPPASRDAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHhcCceeeeccCCCCcCCHHHHHHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 345678899999999999999999999999888877554 3433 5999998888 77778877775
No 109
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=8.6e-07 Score=57.80 Aligned_cols=178 Identities=13% Similarity=0.052 Sum_probs=95.2
Q ss_pred CccchhHHHHHHHHhhc--cchhcceEEeecccchhccccCCCCCCchhHHHHHHhhcchhhhhHHhhcCCHHHHHHHHH
Q 028774 1 MVSEQTGLVGLQAAVME--PEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILC 78 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~--p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (204)
+|||-|+.+.+...-.. --.|++.+++-|..-........+........+......... .-....+..++.++.
T Consensus 115 iGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTIerM~eSpnG~~~t~~l~~~~hv~~lt~y----i~~~~lp~~ir~~Li 190 (301)
T KOG3975|consen 115 IGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTIERMHESPNGIRLTKVLRYLPHVVSLTSY----IYWILLPGFIRFILI 190 (301)
T ss_pred EecchhHHHHHHHhhhcccccceEEEEEecchHHHHhcCCCceEeeeeeeeehhhhheeee----eeeecChHHHHHHHH
Confidence 69999999999887632 235889999888754333222222222222222211111100 001123444555544
Q ss_pred hhcCCCCcccHHHHHHHhccCCCCchHHHH-----HHHHhhcCCCCCCccCCCCCCCeEEEeeCCCCCcchhHHHHhhcc
Q 028774 79 QCYNDTSQVTEELVEKILQPGLETGAADVF-----LEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIELGRAYGNF 153 (204)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~ 153 (204)
..........++.......... +...+.. ..+..-.. ...+.+++-.+-+.+.+|..|.++|.+..+.+++.
T Consensus 191 ~~~l~~~n~p~e~l~tal~l~h-~~v~rn~v~la~qEm~eV~~--~d~e~~een~d~l~Fyygt~DgW~p~~~~d~~kdd 267 (301)
T KOG3975|consen 191 KFMLCGSNGPQEFLSTALFLTH-PQVVRNSVGLAAQEMEEVTT--RDIEYCEENLDSLWFYYGTNDGWVPSHYYDYYKDD 267 (301)
T ss_pred HHhcccCCCcHHHHhhHHHhhc-HHHHHHHhhhchHHHHHHHH--hHHHHHHhcCcEEEEEccCCCCCcchHHHHHHhhh
Confidence 4443333333443322111100 0000000 00000000 00222334456788999999999999999999999
Q ss_pred CCCccEEE-cCCCCCCCCCCCcchhhHHHHHHh
Q 028774 154 DSVEDFIV-LPNVGHCPQDEAPHLVNPLVESFV 185 (204)
Q Consensus 154 ~~~~~~~~-~~~~gH~~~~e~p~~~~~~i~~fl 185 (204)
+|..++.. -+++-|.+...+.+..+..+.+.+
T Consensus 268 ~~eed~~Ldedki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 268 VPEEDLKLDEDKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred cchhceeeccccCCcceeecccHHHHHHHHHhh
Confidence 88765543 267999999998888888887755
No 110
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.22 E-value=4.3e-06 Score=53.73 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=50.4
Q ss_pred CCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 124 LPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 124 ~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
.+.+++|.|-|.|+.|.+++....+.+++.+++..+..-+| ||+++-.. ...+.|.+||...
T Consensus 159 ~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a~vl~Hpg-gH~VP~~~--~~~~~i~~fi~~~ 220 (230)
T KOG2551|consen 159 KRPLSTPSLHIFGETDTIVPSERSEQLAESFKDATVLEHPG-GHIVPNKA--KYKEKIADFIQSF 220 (230)
T ss_pred ccCCCCCeeEEecccceeecchHHHHHHHhcCCCeEEecCC-CccCCCch--HHHHHHHHHHHHH
Confidence 45789999999999999999999999999999997777775 99998765 4555566666543
No 111
>PRK04940 hypothetical protein; Provisional
Probab=98.17 E-value=6.8e-05 Score=47.32 Aligned_cols=52 Identities=10% Similarity=-0.077 Sum_probs=34.9
Q ss_pred CeEEEeeCCCCCcchhHHHHhhccCCCc-cEEEcCCCCCCCCCCCcchhhHHHHHHhh
Q 028774 130 PVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVT 186 (204)
Q Consensus 130 P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 186 (204)
..+++..+.|.+.+...+... +.++ +.++.+|+.|-+. .=++....|.+|+.
T Consensus 126 r~~vllq~gDEvLDyr~a~~~---y~~~y~~~v~~GGdH~f~--~fe~~l~~I~~F~~ 178 (180)
T PRK04940 126 RCLVILSRNDEVLDSQRTAEE---LHPYYEIVWDEEQTHKFK--NISPHLQRIKAFKT 178 (180)
T ss_pred cEEEEEeCCCcccCHHHHHHH---hccCceEEEECCCCCCCC--CHHHHHHHHHHHHh
Confidence 458899999998886654432 3344 6788888777432 33457777888874
No 112
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.13 E-value=1.4e-06 Score=59.54 Aligned_cols=33 Identities=9% Similarity=-0.188 Sum_probs=30.4
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccch
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRM 33 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 33 (204)
|||||||.+|..++.++|++|.++|+++|..+.
T Consensus 117 IGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~ 149 (275)
T cd00707 117 IGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPL 149 (275)
T ss_pred EEecHHHHHHHHHHHHhcCccceeEEecCCccc
Confidence 699999999999999999999999999998543
No 113
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.12 E-value=1.5e-05 Score=52.97 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=48.0
Q ss_pred ccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCc-cEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 122 ELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 122 ~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
....++++|+|+..|--|++|||..+-...+.++.. ++.+++.-+| .+-|.-..+.+..|+...
T Consensus 253 n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~~K~i~iy~~~aH---e~~p~~~~~~~~~~l~~l 317 (321)
T COG3458 253 NLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTTSKTIEIYPYFAH---EGGPGFQSRQQVHFLKIL 317 (321)
T ss_pred hHHHhhccceEEeecccCCCCCChhhHHHhhcccCCceEEEeecccc---ccCcchhHHHHHHHHHhh
Confidence 345678999999999999999999988888886654 5566776556 344666666677777654
No 114
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=98.11 E-value=1.6e-06 Score=58.66 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=29.1
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
+||||||.+++.+|.++|+++.++|+++|..
T Consensus 104 vG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~ 134 (266)
T TIGR03101 104 WGLRLGALLALDAANPLAAKCNRLVLWQPVV 134 (266)
T ss_pred EEECHHHHHHHHHHHhCccccceEEEecccc
Confidence 6999999999999999999999999999863
No 115
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.10 E-value=2.5e-06 Score=54.11 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=39.5
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCC
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEA 173 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~ 173 (204)
.+..+++|++++.|++|.---.+..+.+......+.+..+++.+|+-.+++
T Consensus 202 ~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~a~~~~f~n~~hy~I~~~ 252 (270)
T KOG4627|consen 202 EYTDVTVWILVVAAEHESPKLIEQNRDFADQLRKASFTLFKNYDHYDIIEE 252 (270)
T ss_pred HhcCceeeeeEeeecccCcHHHHhhhhHHHHhhhcceeecCCcchhhHHHH
Confidence 356788999999999996544555566666667799999999999876654
No 116
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.09 E-value=1.2e-05 Score=66.58 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=34.9
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCc
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP 174 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p 174 (204)
..+.+|++++.|..|..........+.+...+.+...++ +||+.++..+
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~v~-g~H~~~~~~~ 1281 (1296)
T PRK10252 1233 VPFDGKATLFVAERTLQEGMSPEQAWSPWIAELDVYRQD-CAHVDIISPE 1281 (1296)
T ss_pred CcccCceEEEEcCCCCcccCCcccchhhhcCCCEEEECC-CCHHHHCCcH
Confidence 456789999999988655555445565555667788887 5998877544
No 117
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.07 E-value=2.1e-06 Score=61.87 Aligned_cols=33 Identities=9% Similarity=-0.106 Sum_probs=30.4
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccch
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLRM 33 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 33 (204)
|||||||.+|..++.++|++|.+++++||..+.
T Consensus 124 IGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP~ 156 (442)
T TIGR03230 124 LGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPT 156 (442)
T ss_pred EEECHHHHHHHHHHHhCCcceeEEEEEcCCCCc
Confidence 699999999999999999999999999998543
No 118
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.03 E-value=1e-05 Score=53.23 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCeEEEeeCCCCCcch--hHHHHhhccCCCccEEEcCCCCCCCC
Q 028774 129 CPVLIAWGDKDPWEPI--ELGRAYGNFDSVEDFIVLPNVGHCPQ 170 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~gH~~~ 170 (204)
.|+++++|+.|.+++. ...+.+.+.-.++++++++|.+|...
T Consensus 167 Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred CCeeeeccccccchHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 4899999999987643 23344555555689999999999654
No 119
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=97.86 E-value=0.00025 Score=46.21 Aligned_cols=37 Identities=19% Similarity=0.042 Sum_probs=27.7
Q ss_pred EEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCC
Q 028774 132 LIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQD 171 (204)
Q Consensus 132 lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 171 (204)
..+-|++|.++|++.++..-+.. +.++.++ ++|+++.
T Consensus 169 ~aiIg~~D~IFpp~nQ~~~W~~~--~~~~~~~-~~Hy~F~ 205 (213)
T PF04301_consen 169 KAIIGKKDRIFPPENQKRAWQGR--CTIVEID-APHYPFF 205 (213)
T ss_pred EEEEcCCCEEeCHHHHHHHHhCc--CcEEEec-CCCcCch
Confidence 46779999999999887754432 4566776 6999874
No 120
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.86 E-value=7.6e-05 Score=54.02 Aligned_cols=30 Identities=23% Similarity=0.109 Sum_probs=28.5
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+|+||||..|+.++.++|+++.+++.+++.
T Consensus 293 aG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs 322 (411)
T PRK10439 293 AGQSFGGLAALYAGLHWPERFGCVLSQSGS 322 (411)
T ss_pred EEEChHHHHHHHHHHhCcccccEEEEeccc
Confidence 499999999999999999999999999986
No 121
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.85 E-value=0.00045 Score=48.95 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=52.6
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCc-cEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCC
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATP 191 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~ 191 (204)
.++++|.++|.|..|.++.++....+.+.+|+- .+..+|+++|..-. ..+.+.|..|+......
T Consensus 259 ~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~~~~~ 323 (367)
T PF10142_consen 259 DRLTMPKYIINATGDEFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNRIQNG 323 (367)
T ss_pred HhcCccEEEEecCCCceeccCchHHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHHHHcC
Confidence 566899999999999999999998888887754 56789999998776 66777888888875433
No 122
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.83 E-value=5.5e-05 Score=54.13 Aligned_cols=29 Identities=24% Similarity=0.123 Sum_probs=21.5
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+|||+||..++..+.+. .++++.|++|+.
T Consensus 233 ~GHSFGGATa~~~l~~d-~r~~~~I~LD~W 261 (379)
T PF03403_consen 233 AGHSFGGATALQALRQD-TRFKAGILLDPW 261 (379)
T ss_dssp EEETHHHHHHHHHHHH--TT--EEEEES--
T ss_pred eecCchHHHHHHHHhhc-cCcceEEEeCCc
Confidence 59999999999887765 689999999986
No 123
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.79 E-value=5.2e-05 Score=49.00 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=50.3
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccCC-----CccEEEcCCCCCCCCC-----CCc------chhhHHHHHH
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFDS-----VEDFIVLPNVGHCPQD-----EAP------HLVNPLVESF 184 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~-----e~p------~~~~~~i~~f 184 (204)
......+++|++++.|+.|.++|+.....+.+.+. +.++.+++|.+|-.+. +.| |+..+.+.+|
T Consensus 157 ~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~W 236 (242)
T KOG3043|consen 157 SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISW 236 (242)
T ss_pred hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHH
Confidence 34466789999999999999999988877766532 2468999999996552 344 4455667777
Q ss_pred hhcc
Q 028774 185 VTRH 188 (204)
Q Consensus 185 l~~~ 188 (204)
+...
T Consensus 237 f~~y 240 (242)
T KOG3043|consen 237 FKHY 240 (242)
T ss_pred HHHh
Confidence 7654
No 124
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.79 E-value=0.00032 Score=47.20 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhcc----CCCccEEEcCCCCCCCCC-CCcchhhHHHHHHh
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQD-EAPHLVNPLVESFV 185 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl 185 (204)
...+|-++++++.|.+++.+..+...+. --+++...+++++|..|+ ++|++..+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 4568999999999999998766654433 334777889999999886 57999999999885
No 125
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.79 E-value=7.4e-05 Score=48.88 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=38.7
Q ss_pred CCCCCCeEEEeeCCCCCc-chhHHHHhhcc-CCCccEEEcCCCCCCCC-CCCcchhhHHHHHH
Q 028774 125 PQVKCPVLIAWGDKDPWE-PIELGRAYGNF-DSVEDFIVLPNVGHCPQ-DEAPHLVNPLVESF 184 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~-~~~~~~~~~~~-~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~f 184 (204)
..+.+|+.++.+++|... +......+.+. ....++..++| +|+.+ .+++..+...|..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~g-~H~~~~~~~~~~~~~~~~~~ 211 (212)
T smart00824 150 GPVAAPTLLVRASEPLAEWPDEDPDGWRAHWPLPHTVVDVPG-DHFTMMEEHAAATARAVHDW 211 (212)
T ss_pred CCCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceeEEccC-chHHHHHHhHHHHHHHHHhh
Confidence 356789999999988654 22323345554 34577888885 88776 45566666666655
No 126
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00015 Score=56.46 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCCCCCe-EEEeeCCCCCcchhHHHHhh----cc-CCCccEEEcCCCCCCCCCCCc-chhhHHHHHHhhccCC
Q 028774 124 LPQVKCPV-LIAWGDKDPWEPIELGRAYG----NF-DSVEDFIVLPNVGHCPQDEAP-HLVNPLVESFVTRHAT 190 (204)
Q Consensus 124 ~~~i~~P~-lii~g~~D~~~~~~~~~~~~----~~-~~~~~~~~~~~~gH~~~~e~p-~~~~~~i~~fl~~~~~ 190 (204)
+..++.|. |+++|+.|.-+..+....+. .. .+ .++.++|+..|.+-.-.. ..+...+..|+..+..
T Consensus 677 ~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~-~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 677 ANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVP-FRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFG 749 (755)
T ss_pred hhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCc-eEEEEeCCCCcccccccchHHHHHHHHHHHHHHcC
Confidence 44555555 99999999988766554443 33 44 788999999998886443 5677888899886554
No 127
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=97.75 E-value=0.00011 Score=51.37 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=42.5
Q ss_pred CeEEEeeCCCCCcchh--HHHHhhccCCCccEEEcCCCCCCCCCCCc-----chhhHHHHHHhhcc
Q 028774 130 PVLIAWGDKDPWEPIE--LGRAYGNFDSVEDFIVLPNVGHCPQDEAP-----HLVNPLVESFVTRH 188 (204)
Q Consensus 130 P~lii~g~~D~~~~~~--~~~~~~~~~~~~~~~~~~~~gH~~~~e~p-----~~~~~~i~~fl~~~ 188 (204)
|++++.++.|.+.... ..+.+++.--.+++.+++++.|.+++-.| .++.+.+.+|+.+.
T Consensus 270 ~tlv~~ag~D~L~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 270 PTLVVVAGYDVLRDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred ceEEEEeCchhhhhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 5999999999877543 44556655555677789999998776544 46777788887653
No 128
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.74 E-value=0.00018 Score=48.45 Aligned_cols=32 Identities=19% Similarity=0.028 Sum_probs=27.5
Q ss_pred CccchhHHHHHHHHhhc---cchhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVME---PEICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~---p~~v~~lvl~~~~~~ 32 (204)
+|||+||.+|+..|.+- -+.|..|+++|+.+.
T Consensus 70 ~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 70 LGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred EeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 59999999999999864 457999999999855
No 129
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=97.74 E-value=0.00035 Score=52.88 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=29.0
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 32 (204)
+|||+||.+++.+|..+|++++++|..++...
T Consensus 102 ~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 102 LGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred EEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 59999999999999999999999999888743
No 130
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=97.63 E-value=0.0015 Score=45.19 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhcc----C-CCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCCC
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNF----D-SVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPP 192 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~----~-~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~~ 192 (204)
..++|++|.+|..|.++|....+.+.+. - .+++++.+++.+|....-. -......||..+....
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~---~~~~a~~Wl~~rf~G~ 285 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAFA---SAPDALAWLDDRFAGK 285 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhhc---CcHHHHHHHHHHHCCC
Confidence 3478999999999999998776664433 4 5678888999999754311 1234456776665544
No 131
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.63 E-value=3.3e-05 Score=56.09 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=27.6
Q ss_pred CccchhHHHHHHHHhhccch----hcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEI----CRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~----v~~lvl~~~~~~ 32 (204)
|||||||.+++.++..+|+. |+++|.++++..
T Consensus 167 VGHSMGGlva~~fl~~~p~~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 167 ISHSMGGLLVKCFMSLHSDVFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred EEECHhHHHHHHHHHHCCHhHHhHhccEEEECCCCC
Confidence 69999999999999998874 788999988743
No 132
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.58 E-value=3.5e-05 Score=52.11 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=28.7
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+|+||||..|+.++.+||+.+.+++.++|.
T Consensus 120 ~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~ 149 (251)
T PF00756_consen 120 AGHSMGGYGALYLALRHPDLFGAVIAFSGA 149 (251)
T ss_dssp EEETHHHHHHHHHHHHSTTTESEEEEESEE
T ss_pred eccCCCcHHHHHHHHhCccccccccccCcc
Confidence 499999999999999999999999999986
No 133
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=97.58 E-value=0.0006 Score=44.95 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=28.3
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
.|+|.||+++..++..|||++.++..+++.+
T Consensus 102 ~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 102 TGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred EEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 4899999999999999999999988888764
No 134
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.57 E-value=4.2e-05 Score=50.71 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=26.1
Q ss_pred CccchhHHHHHHHHhhcc---chhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEP---EICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p---~~v~~lvl~~~~~ 31 (204)
|||||||.+|..++...+ +.|+.+|.++++.
T Consensus 90 VgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh 123 (225)
T PF07819_consen 90 VGHSMGGLVARSALSLPNYDPDSVKTIITLGTPH 123 (225)
T ss_pred EEEchhhHHHHHHHhccccccccEEEEEEEcCCC
Confidence 699999999998887643 5799999999874
No 135
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.46 E-value=0.00023 Score=52.41 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=46.2
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhc------------------------------cCC-----CccEEEcCCCCCCCCCC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGN------------------------------FDS-----VEDFIVLPNVGHCPQDE 172 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~------------------------------~~~-----~~~~~~~~~~gH~~~~e 172 (204)
.++||+..|+.|.+++....+.+.+ ... +.+++.+.++||+++.+
T Consensus 364 gikVLiYnGd~D~icn~~Gt~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~d 443 (462)
T PTZ00472 364 GVRVMIYAGDMDFICNWIGNKAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPMD 443 (462)
T ss_pred CceEEEEECCcCeecCcHhHHHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChhh
Confidence 5799999999998887533222111 012 45667788999999999
Q ss_pred CcchhhHHHHHHhhcc
Q 028774 173 APHLVNPLVESFVTRH 188 (204)
Q Consensus 173 ~p~~~~~~i~~fl~~~ 188 (204)
+|+.+.+.|.+|+...
T Consensus 444 ~P~~~~~~i~~fl~~~ 459 (462)
T PTZ00472 444 QPAVALTMINRFLRNR 459 (462)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999653
No 136
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.45 E-value=0.00022 Score=45.28 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=34.3
Q ss_pred CCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 129 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
.|++.|+|+++.-.... .+. .++++.+.+|| ||.+--+ -+.+++.|.+-+++
T Consensus 140 ~~v~CiyG~~E~d~~cp---~l~--~~~~~~i~lpG-gHHfd~d-y~~La~~Il~~l~~ 191 (192)
T PF06057_consen 140 APVQCIYGEDEDDSLCP---SLR--QPGVEVIALPG-GHHFDGD-YDALAKRILDALKA 191 (192)
T ss_pred CeEEEEEcCCCCCCcCc---ccc--CCCcEEEEcCC-CcCCCCC-HHHHHHHHHHHHhc
Confidence 59999999887532211 122 36789999997 8866644 56677777665543
No 137
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=97.45 E-value=0.00054 Score=43.96 Aligned_cols=56 Identities=23% Similarity=0.501 Sum_probs=39.2
Q ss_pred CCCeEEEeeCCCCCcchhHHHHh----hccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAY----GNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~----~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
..|++..+|+.|+++|....+.. ......++++.++|-+|... |+++ +.+..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~---~~e~-~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS---PQEL-DDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc---HHHH-HHHHHHHHH
Confidence 56999999999999998766553 33333488899999999655 3333 345555554
No 138
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=97.45 E-value=4.8e-05 Score=52.15 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=26.2
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
+|.|++|..++..|...|..+++++...+..
T Consensus 106 ~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~ 136 (272)
T PF02129_consen 106 YGISYGGFTQWAAAARRPPHLKAIVPQSGWS 136 (272)
T ss_dssp EEETHHHHHHHHHHTTT-TTEEEEEEESE-S
T ss_pred eccCHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 4899999999999998888999999987764
No 139
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.35 E-value=0.0019 Score=45.38 Aligned_cols=62 Identities=21% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhccCCCc-cEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVE-DFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
++.+|+-+-.+..|.+..++. .++...||. +....+.+||+..+|.|+.+++.+..|++...
T Consensus 402 ~v~vPtg~a~f~~el~~~~~~--~lrdky~nL~~~s~~~~GGhFaalE~p~~La~D~~~FV~~~~ 464 (469)
T KOG2565|consen 402 QVRVPTGCARFKFELWHTSDD--VLRDKYPNLTHSSYHPKGGHFAALEDPKKLAQDFFSFVEKLN 464 (469)
T ss_pred ccccchhhhccccchhhCcHH--HHhhhcccceeeEeccCCcchhhhhCcHHHHHHHHHHHHHHH
Confidence 567888888888887654443 355667764 34456778999999999999999999998754
No 140
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.31 E-value=0.00052 Score=47.42 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=50.7
Q ss_pred cCCCCC-CCeEEEeeCCCCCcchhHHHHhhccCCC--ccEEEcCCCCCCCCCCCcc---hhhHHHHHHhhcc
Q 028774 123 LLPQVK-CPVLIAWGDKDPWEPIELGRAYGNFDSV--EDFIVLPNVGHCPQDEAPH---LVNPLVESFVTRH 188 (204)
Q Consensus 123 ~~~~i~-~P~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~gH~~~~e~p~---~~~~~i~~fl~~~ 188 (204)
.+.++. +|+++++|.+|..+|......+.+.... .+...+++++|........ +....+.+|+.+.
T Consensus 226 ~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 226 DAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred hHhhcCCcceEEEecCCCcccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 344555 7999999999999999888887766444 5777788889988865444 6778888888765
No 141
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.26 E-value=0.00036 Score=47.31 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=28.3
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+|.|+||.-++.++.++|+.+.+.+++++.
T Consensus 274 iGlSrG~~gt~al~~kfPdfFAaa~~iaG~ 303 (387)
T COG4099 274 IGLSRGGFGTWALAEKFPDFFAAAVPIAGG 303 (387)
T ss_pred EeecCcchhhHHHHHhCchhhheeeeecCC
Confidence 589999999999999999999999999986
No 142
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.26 E-value=0.00018 Score=48.07 Aligned_cols=30 Identities=23% Similarity=0.158 Sum_probs=28.9
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+|||+||.+++.....+|+.+...++++|.
T Consensus 142 ~GhSlGGLfvl~aLL~~p~~F~~y~~~SPS 171 (264)
T COG2819 142 IGHSLGGLFVLFALLTYPDCFGRYGLISPS 171 (264)
T ss_pred eeecchhHHHHHHHhcCcchhceeeeecch
Confidence 699999999999999999999999999997
No 143
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.18 E-value=0.0012 Score=44.12 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=26.5
Q ss_pred CccchhHHHHHHHHhhcc--chhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEP--EICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p--~~v~~lvl~~~~~ 31 (204)
+|||.||-.|..+|..+. -.+++||.+||..
T Consensus 125 ~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~ 157 (307)
T PF07224_consen 125 SGHSRGGKTAFALALGYATSLKFSALIGIDPVA 157 (307)
T ss_pred eecCCccHHHHHHHhcccccCchhheecccccC
Confidence 599999999999999873 2489999999973
No 144
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.11 E-value=0.00029 Score=43.86 Aligned_cols=30 Identities=7% Similarity=-0.161 Sum_probs=24.7
Q ss_pred CccchhHHHHHHHHhhccc----hhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPE----ICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~----~v~~lvl~~~~ 30 (204)
+|||+||.+|..++...+. .+..++..+++
T Consensus 33 ~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p 66 (153)
T cd00741 33 TGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPP 66 (153)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCC
Confidence 5999999999999988765 56677777776
No 145
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=97.09 E-value=0.003 Score=44.37 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=39.3
Q ss_pred CCCeEEEeeCCCCCcc--hhHHHHhhccCCCccEEEcCCCCCCCCCCC-cc--hhhHHHHHHhh
Q 028774 128 KCPVLIAWGDKDPWEP--IELGRAYGNFDSVEDFIVLPNVGHCPQDEA-PH--LVNPLVESFVT 186 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~-p~--~~~~~i~~fl~ 186 (204)
--|++++.|+.|.+.+ ....+.+.+.-..+++..+++..|.+..-. |+ .-...+.+|+.
T Consensus 245 lPP~~i~~a~~D~l~~~~~~~a~~L~~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~ 308 (312)
T COG0657 245 LPPTLIQTAEFDPLRDEGEAYAERLRAAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLR 308 (312)
T ss_pred CCCEEEEecCCCcchhHHHHHHHHHHHcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHH
Confidence 4589999999999888 334455666655678999999999654333 22 22234555554
No 146
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=97.01 E-value=0.00018 Score=50.23 Aligned_cols=57 Identities=21% Similarity=0.106 Sum_probs=43.3
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhH-HHHhhccCCCc--cEEEcCCCCCCCCCCCcchh
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIEL-GRAYGNFDSVE--DFIVLPNVGHCPQDEAPHLV 177 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~-~~~~~~~~~~~--~~~~~~~~gH~~~~e~p~~~ 177 (204)
..-+.+++.|++++.|..|.+.|... .......+++. -+..++++.|+-+++-..+.
T Consensus 244 ~tgl~~v~~P~~~~a~s~D~~aP~~~~~~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 244 TTGLVKVTDPVLLAAGSADGFAPPVTEQIRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred cccceeeecceeeecccccccCCcccccccccccCCcchhheeecCCCccccccccCccc
Confidence 44577899999999999999766543 23344556766 57789999999998877664
No 147
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.97 E-value=0.0024 Score=47.73 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=43.7
Q ss_pred CccCCCCCCCeEEEeeCCCCCcchhHHHHhhccC-CCccEEEcCCCCCCCCCC
Q 028774 121 EELLPQVKCPVLIAWGDKDPWEPIELGRAYGNFD-SVEDFIVLPNVGHCPQDE 172 (204)
Q Consensus 121 ~~~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~e 172 (204)
.+.+-.++.|+|++.|.+|..++++..+.+++++ ...+++++.+++|.+-.-
T Consensus 297 DE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 297 DEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAEVELHVIGGADHSMAIP 349 (784)
T ss_pred chhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhccceEEEecCCCccccCC
Confidence 3456678999999999999999999999988874 457899999999986653
No 148
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.95 E-value=0.00066 Score=49.54 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=42.4
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhcc--------------------------CCCccEEEcCCCCCCCCCCCcchhhHHH
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNF--------------------------DSVEDFIVLPNVGHCPQDEAPHLVNPLV 181 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~gH~~~~e~p~~~~~~i 181 (204)
.++|||..|..|.+++.-..+.+.+. ..+.+++.|.++||+++.++|+...+++
T Consensus 330 ~irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~ 409 (415)
T PF00450_consen 330 GIRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMF 409 (415)
T ss_dssp T-EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHH
T ss_pred cceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHH
Confidence 38999999999999986554443222 1234578899999999999999999999
Q ss_pred HHHhh
Q 028774 182 ESFVT 186 (204)
Q Consensus 182 ~~fl~ 186 (204)
.+||.
T Consensus 410 ~~fl~ 414 (415)
T PF00450_consen 410 RRFLK 414 (415)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99986
No 149
>PLN02633 palmitoyl protein thioesterase family protein
Probab=96.95 E-value=0.0043 Score=42.78 Aligned_cols=31 Identities=16% Similarity=-0.066 Sum_probs=28.4
Q ss_pred CccchhHHHHHHHHhhccc--hhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPE--ICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~ 31 (204)
||+|.||.++-.++.+.|+ .|+.+|.++++-
T Consensus 99 IGfSQGGlflRa~ierc~~~p~V~nlISlggph 131 (314)
T PLN02633 99 VGRSQGNLVARGLIEFCDGGPPVYNYISLAGPH 131 (314)
T ss_pred EEEccchHHHHHHHHHCCCCCCcceEEEecCCC
Confidence 6999999999999999987 599999999874
No 150
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.007 Score=45.76 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=42.3
Q ss_pred CCCeEEEeeCCCCCcchhHHH----HhhccCCCccEEEcCCCCCCCCC-CCcchhhHHHHHHhhc
Q 028774 128 KCPVLIAWGDKDPWEPIELGR----AYGNFDSVEDFIVLPNVGHCPQD-EAPHLVNPLVESFVTR 187 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~----~~~~~~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~~ 187 (204)
.-..|+++|--|.-+--.... .+.+..+.-++.++|+-.|.+-- |..+-.-..+..|+++
T Consensus 802 pnRLlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 802 PNRLLLVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred CceEEEEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 345799999999866544433 34444566789999999998764 4445566778888875
No 151
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=96.84 E-value=0.0071 Score=41.65 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=23.4
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+|||+||..++.....+. .+++.|++|..
T Consensus 246 iGHSFGgAT~i~~ss~~t-~FrcaI~lD~W 274 (399)
T KOG3847|consen 246 IGHSFGGATSIASSSSHT-DFRCAIALDAW 274 (399)
T ss_pred eeccccchhhhhhhcccc-ceeeeeeeeee
Confidence 699999999887766544 68888888875
No 152
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=96.81 E-value=0.0036 Score=44.04 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=44.6
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhcc------------------------CCC-ccEEEcCCCCCCCCCCCcchhhHHHH
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNF------------------------DSV-EDFIVLPNVGHCPQDEAPHLVNPLVE 182 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~------------------------~~~-~~~~~~~~~gH~~~~e~p~~~~~~i~ 182 (204)
.++|||..|..|.+|+.-..+.+.+. ..+ .+++.+.++||+++ .+|+...+.+.
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~ 311 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 311 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHH
Confidence 47999999999988875433332211 112 56777889999997 59999999999
Q ss_pred HHhhcc
Q 028774 183 SFVTRH 188 (204)
Q Consensus 183 ~fl~~~ 188 (204)
+|+...
T Consensus 312 ~fi~~~ 317 (319)
T PLN02213 312 RWISGQ 317 (319)
T ss_pred HHHcCC
Confidence 999753
No 153
>COG0627 Predicted esterase [General function prediction only]
Probab=96.81 E-value=0.00043 Score=48.17 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=29.4
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 32 (204)
+||||||.=|+.+|.++|++++.+...++...
T Consensus 157 ~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~ 188 (316)
T COG0627 157 AGHSMGGYGALKLALKHPDRFKSASSFSGILS 188 (316)
T ss_pred EEEeccchhhhhhhhhCcchhceecccccccc
Confidence 59999999999999999999999999988743
No 154
>PLN02606 palmitoyl-protein thioesterase
Probab=96.71 E-value=0.011 Score=40.77 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=28.3
Q ss_pred CccchhHHHHHHHHhhccc--hhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPE--ICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~ 31 (204)
||+|.||.++-.++.+.|+ .|+.+|.++++-
T Consensus 100 IGfSQGglflRa~ierc~~~p~V~nlISlggph 132 (306)
T PLN02606 100 VAESQGNLVARGLIEFCDNAPPVINYVSLGGPH 132 (306)
T ss_pred EEEcchhHHHHHHHHHCCCCCCcceEEEecCCc
Confidence 6999999999999999987 599999999874
No 155
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=96.65 E-value=0.0012 Score=44.49 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=27.5
Q ss_pred CccchhHHHHHHHHhhc-----cchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVME-----PEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~-----p~~v~~lvl~~~~ 30 (204)
.|||-||-+|..++..+ +.+++++|+++|.
T Consensus 96 ~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPV 130 (259)
T PF12740_consen 96 AGHSRGGKVAFAMALGNASSSLDLRFSALILLDPV 130 (259)
T ss_pred eeeCCCCHHHHHHHhhhcccccccceeEEEEeccc
Confidence 59999999999999987 5689999999997
No 156
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.62 E-value=0.0015 Score=43.37 Aligned_cols=31 Identities=10% Similarity=-0.094 Sum_probs=26.0
Q ss_pred CccchhHHHHHHHHhhc----cchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVME----PEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~----p~~v~~lvl~~~~~ 31 (204)
.|||.||.+|...|... .++|.+++..++++
T Consensus 89 ~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPG 123 (224)
T PF11187_consen 89 TGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPG 123 (224)
T ss_pred EEechhhHHHHHHHHHccHHHhhheeEEEEeeCCC
Confidence 39999999999999884 35788999888874
No 157
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=96.61 E-value=0.0011 Score=47.93 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=27.3
Q ss_pred CccchhHHHHHHHHhhccc------hhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPE------ICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~------~v~~lvl~~~~~~ 32 (204)
|||||||.++..+....+. .|+++|.++++..
T Consensus 124 i~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 124 IAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred EEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCC
Confidence 6999999999999888743 5999999998743
No 158
>PLN02209 serine carboxypeptidase
Probab=96.55 E-value=0.0082 Score=44.10 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhcc------------------------CCC-ccEEEcCCCCCCCCCCCcchhhHHHH
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNF------------------------DSV-EDFIVLPNVGHCPQDEAPHLVNPLVE 182 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~------------------------~~~-~~~~~~~~~gH~~~~e~p~~~~~~i~ 182 (204)
.++||+..|+.|.+|+.-..+.+.+. ..+ .+++.+.+|||++. .+|++..+.+.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 47999999999999886443332211 222 56778889999996 69999999999
Q ss_pred HHhhc
Q 028774 183 SFVTR 187 (204)
Q Consensus 183 ~fl~~ 187 (204)
+|+..
T Consensus 430 ~fi~~ 434 (437)
T PLN02209 430 RWISG 434 (437)
T ss_pred HHHcC
Confidence 99965
No 159
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.48 E-value=0.0018 Score=45.61 Aligned_cols=34 Identities=9% Similarity=-0.141 Sum_probs=27.6
Q ss_pred CccchhHHHHHHHHhhccc--hhcceEEeecccchh
Q 028774 1 MVSEQTGLVGLQAAVMEPE--ICRGMILLNISLRML 34 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~~~~~ 34 (204)
||||+||.||-.++..... +|.+++.+||+.+..
T Consensus 155 IGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~F 190 (331)
T PF00151_consen 155 IGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPLF 190 (331)
T ss_dssp EEETCHHHHHHHHHHHTTT---SSEEEEES-B-TTT
T ss_pred EeeccchhhhhhhhhhccCcceeeEEEecCcccccc
Confidence 6999999999999988877 899999999986543
No 160
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=96.43 E-value=0.011 Score=43.42 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhcc------------------------CCC-ccEEEcCCCCCCCCCCCcchhhHHHH
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNF------------------------DSV-EDFIVLPNVGHCPQDEAPHLVNPLVE 182 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~------------------------~~~-~~~~~~~~~gH~~~~e~p~~~~~~i~ 182 (204)
.++|||..|+.|.+++.-..+.+.+. ..+ .+++.+.+|||++. .+|++..+.+.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 47999999999998885443332211 112 56778889999996 69999999999
Q ss_pred HHhhcc
Q 028774 183 SFVTRH 188 (204)
Q Consensus 183 ~fl~~~ 188 (204)
+|+...
T Consensus 426 ~Fi~~~ 431 (433)
T PLN03016 426 RWISGQ 431 (433)
T ss_pred HHHcCC
Confidence 999653
No 161
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=96.42 E-value=0.0065 Score=38.85 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=44.8
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhcc---CCC--ccEEEcCCCCCCCCCCC---cchhhHHHHHHhhcc
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNF---DSV--EDFIVLPNVGHCPQDEA---PHLVNPLVESFVTRH 188 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~---~~~--~~~~~~~~~gH~~~~e~---p~~~~~~i~~fl~~~ 188 (204)
+++.|-|-|+.|.++.+.......++ +|. ...++.+|+||+-.+.- .+++.-.|.+|+.++
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQH 202 (202)
T ss_pred cceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHhC
Confidence 46788899999999988665554444 443 24567889999877654 478888999998753
No 162
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=96.37 E-value=0.015 Score=38.75 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=32.7
Q ss_pred cCCCCCCCeEEEeeCCCCCcchhHHHHhhcc--CCCccEEEcCCCCCCCC
Q 028774 123 LLPQVKCPVLIAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQ 170 (204)
Q Consensus 123 ~~~~i~~P~lii~g~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~ 170 (204)
.++.+.+|++.+.+++|.|+.......+... .+..++..++|++|-+.
T Consensus 190 ~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 190 DMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSSHDLG 239 (294)
T ss_dssp HHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-SS-TT
T ss_pred HHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCccchhh
Confidence 3567799999999999999998888887775 44578888999999776
No 163
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=96.35 E-value=0.012 Score=43.15 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=47.0
Q ss_pred CCeEEEeeCCCCCcchhHHHHhhcc-------------------------CCCccEEEcCCCCCCCCCCCcchhhHHHHH
Q 028774 129 CPVLIAWGDKDPWEPIELGRAYGNF-------------------------DSVEDFIVLPNVGHCPQDEAPHLVNPLVES 183 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~ 183 (204)
.+++|..|+.|.++|.-..+.+.+. ..+..+..+.|+||++..++|+.....+..
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 7999999999999986544432110 112345778899999999999999999999
Q ss_pred HhhccC
Q 028774 184 FVTRHA 189 (204)
Q Consensus 184 fl~~~~ 189 (204)
|+....
T Consensus 444 fl~g~~ 449 (454)
T KOG1282|consen 444 FLNGQP 449 (454)
T ss_pred HHcCCC
Confidence 998754
No 164
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=96.15 E-value=0.0037 Score=39.71 Aligned_cols=32 Identities=13% Similarity=-0.137 Sum_probs=27.8
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 32 (204)
+|||+|+.++-..+...+..+..+|+++++..
T Consensus 114 ~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~ 145 (177)
T PF06259_consen 114 VGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGM 145 (177)
T ss_pred EEecchhHHHHHHhhhCCCCcccEEEECCCCC
Confidence 69999999999888887788999999998743
No 165
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.0038 Score=42.64 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=28.6
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
.|-|+||.+++..+.+||+++-.++..+|..
T Consensus 182 ~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~ 212 (299)
T COG2382 182 AGDSLGGLVSLYAGLRHPERFGHVLSQSGSF 212 (299)
T ss_pred eccccccHHHHHHHhcCchhhceeeccCCcc
Confidence 4899999999999999999999999988873
No 166
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=96.03 E-value=0.0044 Score=37.83 Aligned_cols=18 Identities=17% Similarity=-0.056 Sum_probs=15.3
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
.|||+||.+|..++....
T Consensus 69 tGHSLGGalA~l~a~~l~ 86 (140)
T PF01764_consen 69 TGHSLGGALASLAAADLA 86 (140)
T ss_dssp EEETHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHhhh
Confidence 499999999999888653
No 167
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=95.87 E-value=0.0049 Score=41.19 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=15.2
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
.|||+||.+|..++....
T Consensus 133 tGHSLGGaiA~l~a~~l~ 150 (229)
T cd00519 133 TGHSLGGALASLLALDLR 150 (229)
T ss_pred EccCHHHHHHHHHHHHHH
Confidence 499999999999888643
No 168
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.0039 Score=48.08 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=23.7
Q ss_pred CccchhHHHHHHHHhh---ccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVM---EPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~---~p~~v~~lvl~~~~~ 31 (204)
|||||||.+|...+.. .++.|.-+|..+++.
T Consensus 187 VGHSMGGiVAra~~tlkn~~~~sVntIITlssPH 220 (973)
T KOG3724|consen 187 VGHSMGGIVARATLTLKNEVQGSVNTIITLSSPH 220 (973)
T ss_pred EeccchhHHHHHHHhhhhhccchhhhhhhhcCcc
Confidence 7999999999877653 356777777777763
No 169
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.049 Score=33.80 Aligned_cols=29 Identities=7% Similarity=-0.184 Sum_probs=23.7
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
|++|||-++|-++..-.+ +++.+.+++..
T Consensus 62 vAwSMGVwvAeR~lqg~~--lksatAiNGTg 90 (214)
T COG2830 62 VAWSMGVWVAERVLQGIR--LKSATAINGTG 90 (214)
T ss_pred hhhhHHHHHHHHHHhhcc--ccceeeecCCC
Confidence 679999999999887765 78888888763
No 170
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=95.67 E-value=0.0058 Score=43.34 Aligned_cols=32 Identities=9% Similarity=-0.035 Sum_probs=29.0
Q ss_pred CccchhHHHHHHHHhhcc--chhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEP--EICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p--~~v~~lvl~~~~~~ 32 (204)
+||||||.+...++..++ .+|+.++.++++-.
T Consensus 132 igHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~ 165 (336)
T COG1075 132 IGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHH 165 (336)
T ss_pred EeecccchhhHHHHhhcCccceEEEEEEeccCCC
Confidence 699999999999999988 89999999999743
No 171
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=95.38 E-value=0.22 Score=38.25 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.7
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 32 (204)
+|-|-||++....+...|+.++++|+--|...
T Consensus 532 ~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVD 563 (682)
T COG1770 532 IGGSAGGMLMGAVANMAPDLFAGIIAQVPFVD 563 (682)
T ss_pred eccCchhHHHHHHHhhChhhhhheeecCCccc
Confidence 58899999999999999999999999887643
No 172
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=95.34 E-value=0.012 Score=39.37 Aligned_cols=32 Identities=9% Similarity=-0.075 Sum_probs=26.5
Q ss_pred CccchhHHHHHHHHhhccc-----hhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPE-----ICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~-----~v~~lvl~~~~~~ 32 (204)
|||||||.-...|+..|.. .+.++|.++++..
T Consensus 141 VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 141 VGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred eeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 7999999999999887632 4899999998743
No 173
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.0093 Score=37.29 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=28.2
Q ss_pred ccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 2 VSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
|.||||..|..+..++|+.+.++|.+++..
T Consensus 107 gcsmGayhA~nfvfrhP~lftkvialSGvY 136 (227)
T COG4947 107 GCSMGAYHAANFVFRHPHLFTKVIALSGVY 136 (227)
T ss_pred ccchhhhhhhhhheeChhHhhhheeeccee
Confidence 789999999999999999999999999873
No 174
>KOG3101 consensus Esterase D [General function prediction only]
Probab=94.85 E-value=0.0024 Score=41.30 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=27.6
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
.||||||.=|+..+.+.|.+.+++-..+|..
T Consensus 146 fGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~ 176 (283)
T KOG3101|consen 146 FGHSMGGHGALTIYLKNPSKYKSVSAFAPIC 176 (283)
T ss_pred eccccCCCceEEEEEcCcccccceecccccc
Confidence 4999999999999999999999988877764
No 175
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=94.56 E-value=0.51 Score=33.83 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=48.7
Q ss_pred CCCCCCeEEEeeCCCCCcchhHHHHhhccCCCcc-EEEcCCCCCCCCCCCcchhhHHHHHHhhccCC
Q 028774 125 PQVKCPVLIAWGDKDPWEPIELGRAYGNFDSVED-FIVLPNVGHCPQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 125 ~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
.++..|-.|+.|..|.++.++.+..+.+.+|+.+ +..+|+..|..- +..+.+.|..|+.+...
T Consensus 326 ~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~kaLrmvPN~~H~~~---n~~i~esl~~flnrfq~ 389 (507)
T COG4287 326 LRLALPKYIVNASGDDFFVPDSANLYYDDLPGEKALRMVPNDPHNLI---NQFIKESLEPFLNRFQM 389 (507)
T ss_pred hhccccceeecccCCcccCCCccceeeccCCCceeeeeCCCCcchhh---HHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999988765 567899888654 44455666666666543
No 176
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=94.55 E-value=0.029 Score=37.53 Aligned_cols=30 Identities=13% Similarity=0.023 Sum_probs=24.5
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
||||+|+.+-+.+...++..-++.|+++-.
T Consensus 95 vGHSlGcklhlLi~s~~~~~r~gniliSFN 124 (250)
T PF07082_consen 95 VGHSLGCKLHLLIGSLFDVERAGNILISFN 124 (250)
T ss_pred eecccchHHHHHHhhhccCcccceEEEecC
Confidence 799999999998888886555777887754
No 177
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=94.42 E-value=0.22 Score=35.14 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=26.1
Q ss_pred CccchhHHHHHHHHhhccc-hhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPE-ICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~-~v~~lvl~~~~ 30 (204)
|||+.|+.+++.|....+. .+.+||++++.
T Consensus 198 Ig~G~gA~~~~~~la~~~~~~~daLV~I~a~ 228 (310)
T PF12048_consen 198 IGHGTGAGWAARYLAEKPPPMPDALVLINAY 228 (310)
T ss_pred EEeChhHHHHHHHHhcCCCcccCeEEEEeCC
Confidence 6999999999999888754 58999999986
No 178
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=94.38 E-value=0.026 Score=37.46 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=12.1
Q ss_pred CccchhHHHHHHHHh
Q 028774 1 MVSEQTGLVGLQAAV 15 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~ 15 (204)
|||||||.++-.+..
T Consensus 83 IgHSLGGli~r~al~ 97 (217)
T PF05057_consen 83 IGHSLGGLIARYALG 97 (217)
T ss_pred EEecccHHHHHHHHH
Confidence 799999999875544
No 179
>PLN02162 triacylglycerol lipase
Probab=94.12 E-value=0.047 Score=40.10 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=13.2
Q ss_pred CccchhHHHHHHHHh
Q 028774 1 MVSEQTGLVGLQAAV 15 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~ 15 (204)
.|||+||.+|+.+|.
T Consensus 283 TGHSLGGALAtLaAa 297 (475)
T PLN02162 283 TGHSLGGALAALFPA 297 (475)
T ss_pred EecChHHHHHHHHHH
Confidence 499999999998765
No 180
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=93.62 E-value=0.049 Score=38.99 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=21.1
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+|+||||..++.+|+..+ +|+..|..+-.
T Consensus 231 ~GfSmGg~~a~~LaALDd-RIka~v~~~~l 259 (390)
T PF12715_consen 231 MGFSMGGYRAWWLAALDD-RIKATVANGYL 259 (390)
T ss_dssp EEEGGGHHHHHHHHHH-T-T--EEEEES-B
T ss_pred EeecccHHHHHHHHHcch-hhHhHhhhhhh
Confidence 599999999999998854 89888776654
No 181
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=93.55 E-value=0.73 Score=35.18 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=28.2
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 32 (204)
+|.|++|...+.+|+..|..++.++.+.+...
T Consensus 129 ~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 129 LGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred ecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 58999999999999999989999998887643
No 182
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=93.44 E-value=0.39 Score=31.84 Aligned_cols=31 Identities=10% Similarity=-0.166 Sum_probs=24.9
Q ss_pred CccchhHHHHHHHHhh--ccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVM--EPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~--~p~~v~~lvl~~~~~ 31 (204)
||||.|+.=.+.|..+ .|..|.+.|+.+|..
T Consensus 112 ~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVS 144 (299)
T KOG4840|consen 112 VGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVS 144 (299)
T ss_pred EecCccchHHHHHHHhccchHHHHHHHHhCccc
Confidence 6999999988888733 477789999988874
No 183
>PLN00413 triacylglycerol lipase
Probab=93.39 E-value=0.074 Score=39.23 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=13.4
Q ss_pred CccchhHHHHHHHHh
Q 028774 1 MVSEQTGLVGLQAAV 15 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~ 15 (204)
.|||+||.+|..+|.
T Consensus 289 TGHSLGGALAtLaA~ 303 (479)
T PLN00413 289 SGHSLGGALAILFTA 303 (479)
T ss_pred EecCHHHHHHHHHHH
Confidence 499999999999885
No 184
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=93.20 E-value=0.071 Score=35.83 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=22.8
Q ss_pred CccchhHHHHHHHHhh----cc-----chhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVM----EP-----EICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~----~p-----~~v~~lvl~~~~ 30 (204)
|+||||+.+.+..... .+ .++..+|+++|-
T Consensus 98 laHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApD 136 (233)
T PF05990_consen 98 LAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPD 136 (233)
T ss_pred EEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCC
Confidence 6899999998877543 22 367888998875
No 185
>PLN02571 triacylglycerol lipase
Probab=93.05 E-value=0.055 Score=39.26 Aligned_cols=16 Identities=13% Similarity=-0.116 Sum_probs=14.2
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|||+||.+|+..|..
T Consensus 231 TGHSLGGALAtLaA~d 246 (413)
T PLN02571 231 CGHSLGAALATLNAVD 246 (413)
T ss_pred eccchHHHHHHHHHHH
Confidence 4999999999998875
No 186
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=92.60 E-value=2.5 Score=29.53 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=46.9
Q ss_pred CCCeEEEeeCCCCCcchhHHHHh---hccCCCc--cEEEcCCCCCCCCCCC---cchhhHHHHHHhhccCCCCC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAY---GNFDSVE--DFIVLPNVGHCPQDEA---PHLVNPLVESFVTRHATPPA 193 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~---~~~~~~~--~~~~~~~~gH~~~~e~---p~~~~~~i~~fl~~~~~~~~ 193 (204)
++-.+-|-|++|.+......+.. ...+|.. +...-+++||+..+.- .+++...|.+|+.+......
T Consensus 339 ~~aL~tvEGEnDDIsgvGQTkAA~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~d~~~~ 412 (415)
T COG4553 339 NVALFTVEGENDDISGVGQTKAAHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRYDRSNR 412 (415)
T ss_pred ceeEEEeecccccccccchhHHHHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHhCcccc
Confidence 46678889999998776554443 3334432 3455689999877653 57889999999999876554
No 187
>PLN02310 triacylglycerol lipase
Probab=92.55 E-value=0.068 Score=38.72 Aligned_cols=16 Identities=19% Similarity=0.055 Sum_probs=13.9
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|||+||.+|+..|..
T Consensus 214 TGHSLGGALAtLaA~d 229 (405)
T PLN02310 214 TGHSLGGALALLNAYE 229 (405)
T ss_pred EcccHHHHHHHHHHHH
Confidence 4999999999988854
No 188
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=92.49 E-value=0.06 Score=40.22 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=47.4
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhh----ccCC--------CccEEEcCCCCCCCCCC--CcchhhHHHHHHhhccCCCC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYG----NFDS--------VEDFIVLPNVGHCPQDE--APHLVNPLVESFVTRHATPP 192 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~----~~~~--------~~~~~~~~~~gH~~~~e--~p~~~~~~i~~fl~~~~~~~ 192 (204)
.-.+++.||..|.++++.....+. +... -.++..+||.+|+.--. .+-.....|.+|+++-..+.
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G~AP~ 431 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENGKAPE 431 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCCCCCC
Confidence 467899999999999976544433 2232 14678999999987644 45578889999999766544
No 189
>PLN02454 triacylglycerol lipase
Probab=92.44 E-value=0.079 Score=38.50 Aligned_cols=16 Identities=13% Similarity=-0.141 Sum_probs=14.2
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|||+||.+|+.+|..
T Consensus 233 TGHSLGGALAtLaA~d 248 (414)
T PLN02454 233 TGHSLGASLATLAAFD 248 (414)
T ss_pred EecCHHHHHHHHHHHH
Confidence 4999999999999865
No 190
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=92.27 E-value=0.12 Score=34.35 Aligned_cols=17 Identities=6% Similarity=-0.150 Sum_probs=14.2
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
|||||||.++..|....
T Consensus 80 VgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 80 VGHSMGGTIARYYIKGG 96 (219)
T ss_dssp EEETCHHHHHHHHHHHC
T ss_pred EEcCCcCHHHHHHHHHc
Confidence 69999999999887543
No 191
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=92.21 E-value=0.069 Score=37.62 Aligned_cols=29 Identities=17% Similarity=0.042 Sum_probs=25.1
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
.|||.||.-+..+|..||+ |+++||-++.
T Consensus 316 ygWSIGGF~~~waAs~YPd-VkavvLDAtF 344 (517)
T KOG1553|consen 316 YGWSIGGFPVAWAASNYPD-VKAVVLDATF 344 (517)
T ss_pred EEeecCCchHHHHhhcCCC-ceEEEeecch
Confidence 3899999999999999996 9998886654
No 192
>PLN02324 triacylglycerol lipase
Probab=92.20 E-value=0.087 Score=38.27 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=14.1
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|||+||.+|+..|..
T Consensus 220 TGHSLGGALAtLaA~d 235 (415)
T PLN02324 220 TGHSLGAVMSVLSAAD 235 (415)
T ss_pred ecCcHHHHHHHHHHHH
Confidence 4999999999998864
No 193
>PLN02408 phospholipase A1
Probab=91.84 E-value=0.1 Score=37.33 Aligned_cols=18 Identities=6% Similarity=-0.224 Sum_probs=15.2
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
.|||+||.+|+.+|....
T Consensus 205 TGHSLGGALAtLaA~dl~ 222 (365)
T PLN02408 205 TGHSLGAALATLTAYDIK 222 (365)
T ss_pred eccchHHHHHHHHHHHHH
Confidence 499999999999887643
No 194
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=91.32 E-value=0.13 Score=37.15 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=41.7
Q ss_pred CCeEEEeeCCCCCcchhHHHHhhcc----CCCccEEEc-----------CCCCCCCCCCCcchhhHHHHHHhhccCC
Q 028774 129 CPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVL-----------PNVGHCPQDEAPHLVNPLVESFVTRHAT 190 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~~-----------~~~gH~~~~e~p~~~~~~i~~fl~~~~~ 190 (204)
+-.+..|+..|...|.+.-+.+.+. -=++++..+ .+..|.+-+..-..|...+-..+++...
T Consensus 294 ~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfda~l~lIkdes~iDGkfIKnl~HGmgis~k~Lf~KeLp~~lek~~~ 370 (403)
T PF11144_consen 294 IIYVSYHSIKDDLAPAEDKEELYEILKNLGFDATLHLIKDESEIDGKFIKNLEHGMGISDKALFKKELPLMLEKLQG 370 (403)
T ss_pred eEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCeEEEEecChhhccchheeccccCCCCCHHHHHHHHhHHHHHHhhc
Confidence 3456678999999998876665544 235666655 4567877776666677777776666443
No 195
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=91.23 E-value=0.072 Score=39.02 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=25.4
Q ss_pred CccchhHHHHHHHHhhccc--------hhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPE--------ICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~--------~v~~lvl~~~~ 30 (204)
|+|||||.+.+.+...+++ .++++|-++++
T Consensus 187 isHSMG~l~~lyFl~w~~~~~~~W~~k~I~sfvnig~p 224 (473)
T KOG2369|consen 187 ISHSMGGLYVLYFLKWVEAEGPAWCDKYIKSFVNIGAP 224 (473)
T ss_pred EecCCccHHHHHHHhcccccchhHHHHHHHHHHccCch
Confidence 6899999999999998876 47788877765
No 196
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=91.20 E-value=0.11 Score=39.47 Aligned_cols=31 Identities=6% Similarity=-0.069 Sum_probs=24.5
Q ss_pred CccchhHHHHHHHHhhc---------------cchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVME---------------PEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~---------------p~~v~~lvl~~~~~ 31 (204)
|||||||.+++.+.... -..|++.|.++++.
T Consensus 218 V~HSMGglv~lyFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~ 263 (642)
T PLN02517 218 VPHSMGVLYFLHFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPF 263 (642)
T ss_pred EEeCCchHHHHHHHHhccccccccCCcchHHHHHHHHHheeccccc
Confidence 69999999999986532 13589999999874
No 197
>PLN02719 triacylglycerol lipase
Probab=90.93 E-value=0.14 Score=38.24 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=14.0
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|||+||.+|+..|..
T Consensus 303 TGHSLGGALAtLaA~D 318 (518)
T PLN02719 303 TGHSLGGALAVLSAYD 318 (518)
T ss_pred ecCcHHHHHHHHHHHH
Confidence 4999999999998864
No 198
>PLN02847 triacylglycerol lipase
Probab=90.93 E-value=0.14 Score=39.03 Aligned_cols=16 Identities=6% Similarity=-0.074 Sum_probs=14.1
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
+|||+||.+|..++..
T Consensus 256 TGHSLGGGVAALLAil 271 (633)
T PLN02847 256 VGHSLGGGTAALLTYI 271 (633)
T ss_pred eccChHHHHHHHHHHH
Confidence 5999999999988765
No 199
>PLN02761 lipase class 3 family protein
Probab=90.86 E-value=0.14 Score=38.30 Aligned_cols=16 Identities=13% Similarity=-0.080 Sum_probs=13.8
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|||+||.+|+..|..
T Consensus 299 TGHSLGGALAtLaA~D 314 (527)
T PLN02761 299 TGHSLGASLALVSAYD 314 (527)
T ss_pred eccchHHHHHHHHHHH
Confidence 4999999999988853
No 200
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=90.70 E-value=0.16 Score=34.87 Aligned_cols=31 Identities=16% Similarity=-0.028 Sum_probs=24.7
Q ss_pred CccchhHHHHHHHHhhccc-hhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPE-ICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~-~v~~lvl~~~~~ 31 (204)
||+|-||.++-.++.++|+ .|+.+|.++++-
T Consensus 85 IGfSQGgl~lRa~vq~c~~~~V~nlISlggph 116 (279)
T PF02089_consen 85 IGFSQGGLFLRAYVQRCNDPPVHNLISLGGPH 116 (279)
T ss_dssp EEETCHHHHHHHHHHH-TSS-EEEEEEES--T
T ss_pred eeeccccHHHHHHHHHCCCCCceeEEEecCcc
Confidence 6999999999999999875 699999999873
No 201
>PLN02753 triacylglycerol lipase
Probab=90.50 E-value=0.15 Score=38.12 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.0
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|||+||.+|+..|..
T Consensus 317 TGHSLGGALAtLaA~D 332 (531)
T PLN02753 317 TGHSLGGALAILSAYD 332 (531)
T ss_pred EccCHHHHHHHHHHHH
Confidence 4999999999998864
No 202
>PLN03037 lipase class 3 family protein; Provisional
Probab=90.49 E-value=0.16 Score=37.95 Aligned_cols=16 Identities=19% Similarity=0.055 Sum_probs=13.9
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|||+||.+|+..|..
T Consensus 323 TGHSLGGALAtLaA~D 338 (525)
T PLN03037 323 TGHSLGGALALLNAYE 338 (525)
T ss_pred eccCHHHHHHHHHHHH
Confidence 4999999999998854
No 203
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=90.40 E-value=1.1 Score=33.87 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=29.6
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 32 (204)
.|.|-||.-++..|++||+.+.++|.-+|...
T Consensus 120 ~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 120 SGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred EEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 48999999999999999999999999999854
No 204
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=90.38 E-value=0.18 Score=35.89 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=24.5
Q ss_pred CccchhHHHHHHHHhhccch-----hcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEI-----CRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~-----v~~lvl~~~~~ 31 (204)
||||+|+.+...+...-.++ |+.+++++.+.
T Consensus 225 vG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv 260 (345)
T PF05277_consen 225 VGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPV 260 (345)
T ss_pred EeecccHHHHHHHHHHHHhccccCeEeeEEEecCCC
Confidence 69999999988777655443 88899998764
No 205
>PLN02934 triacylglycerol lipase
Probab=90.30 E-value=0.17 Score=37.73 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=13.3
Q ss_pred CccchhHHHHHHHHh
Q 028774 1 MVSEQTGLVGLQAAV 15 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~ 15 (204)
.|||+||.+|..+|.
T Consensus 326 TGHSLGGALAtLaA~ 340 (515)
T PLN02934 326 TGHSLGGALAILFPT 340 (515)
T ss_pred eccccHHHHHHHHHH
Confidence 499999999999875
No 206
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=89.98 E-value=2.2 Score=31.00 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=24.7
Q ss_pred CccchhHHHHHHHHhhc--cc---hhcceEEeecccchh
Q 028774 1 MVSEQTGLVGLQAAVME--PE---ICRGMILLNISLRML 34 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~--p~---~v~~lvl~~~~~~~~ 34 (204)
+|-|-||.+++.+.+.. +. .-+++||++|.....
T Consensus 200 mGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 200 MGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred EecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 68999999998876531 11 247999999986544
No 207
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=89.81 E-value=0.51 Score=34.39 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=38.2
Q ss_pred CCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCC-----cchhhHHHHHHhh
Q 028774 129 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEA-----PHLVNPLVESFVT 186 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~-----p~~~~~~i~~fl~ 186 (204)
-.+|+|+|++|++.-... .+.+.-.+..+.+.||+.|...+.. .++....|.+|..
T Consensus 352 ~rmlFVYG~nDPW~A~~f--~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 352 PRMLFVYGENDPWSAEPF--RLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred CeEEEEeCCCCCcccCcc--ccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 458999999999865443 2222234677888999999866543 3456667777764
No 208
>PLN02802 triacylglycerol lipase
Probab=89.79 E-value=0.21 Score=37.33 Aligned_cols=17 Identities=12% Similarity=-0.150 Sum_probs=14.5
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
.|||+||.+|+..|...
T Consensus 335 TGHSLGGALAtLaA~dL 351 (509)
T PLN02802 335 TGHSLGAALALLVADEL 351 (509)
T ss_pred eccchHHHHHHHHHHHH
Confidence 49999999999888754
No 209
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=0.18 Score=33.07 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=26.1
Q ss_pred CccchhHHHHHHHHhhccc--hhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPE--ICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~--~v~~lvl~~~~ 30 (204)
|.||+||...+.+..++|+ +|.++.+.+++
T Consensus 195 vahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 195 VAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred EEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 5799999999999999974 68888888876
No 210
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=89.50 E-value=0.23 Score=35.45 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=13.6
Q ss_pred ccchhHHHHHHHHhh
Q 028774 2 VSEQTGLVGLQAAVM 16 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~ 16 (204)
|||+||.+|..+|..
T Consensus 177 GHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 177 GHSLGGALASLAALD 191 (336)
T ss_pred cCChHHHHHHHHHHH
Confidence 999999999988865
No 211
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=89.50 E-value=0.24 Score=36.78 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=25.0
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
+|-|+||++|..+-.+||+.|.+.+..+++.
T Consensus 118 ~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv 148 (434)
T PF05577_consen 118 FGGSYGGALAAWFRLKYPHLFDGAWASSAPV 148 (434)
T ss_dssp EEETHHHHHHHHHHHH-TTT-SEEEEET--C
T ss_pred ECCcchhHHHHHHHhhCCCeeEEEEecccee
Confidence 5899999999999999999999999888775
No 212
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=89.01 E-value=0.21 Score=36.23 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=26.7
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
+|-|+||+++..+=.+||..|.+.+..+.+.
T Consensus 172 fGGSYGGMLaAWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 172 FGGSYGGMLAAWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred ecCchhhHHHHHHHhcChhhhhhhhhccCce
Confidence 5899999999999999999998877666553
No 213
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=88.30 E-value=0.26 Score=39.22 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=14.6
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
+||||||.++..++..
T Consensus 560 lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 560 LGHSLGGIVGTSFIAY 575 (792)
T ss_pred EecCHHHHHHHHHHHh
Confidence 6999999999999975
No 214
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=87.35 E-value=0.34 Score=31.14 Aligned_cols=31 Identities=13% Similarity=-0.046 Sum_probs=24.4
Q ss_pred CccchhHHHHHHHHhh------ccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVM------EPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~------~p~~v~~lvl~~~~~ 31 (204)
+|+|.|+.++..++.. ..++|.++|+++-+.
T Consensus 86 ~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~ 122 (179)
T PF01083_consen 86 AGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPR 122 (179)
T ss_dssp EEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TT
T ss_pred EecccccHHHHHHHHhccCChhhhhhEEEEEEecCCc
Confidence 5999999999998876 346788888887653
No 215
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.85 E-value=0.89 Score=31.62 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=27.9
Q ss_pred ccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 2 VSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
|.|-||.++..++..+|+.+.++.++++..
T Consensus 150 GlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 150 GLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred eeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 889999999999999999999999998864
No 216
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=83.73 E-value=0.85 Score=31.54 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=15.5
Q ss_pred ccchhHHHHHHHHhhcc
Q 028774 2 VSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~~p 18 (204)
|||+||.+|..+..++.
T Consensus 282 GHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 282 GHSLGGAIASLLGIRFG 298 (425)
T ss_pred ccccchHHHHHhccccC
Confidence 99999999999988874
No 217
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=83.73 E-value=0.85 Score=31.54 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=15.5
Q ss_pred ccchhHHHHHHHHhhcc
Q 028774 2 VSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~~p 18 (204)
|||+||.+|..+..++.
T Consensus 282 GHSLGGa~AsLlG~~fg 298 (425)
T COG5153 282 GHSLGGAIASLLGIRFG 298 (425)
T ss_pred ccccchHHHHHhccccC
Confidence 99999999999988874
No 218
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.04 E-value=1 Score=32.28 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=21.9
Q ss_pred CccchhHHHHHHHHhh--------ccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVM--------EPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~--------~p~~v~~lvl~~~~ 30 (204)
++||||..+.++...+ -+.+++-+||-+|-
T Consensus 196 lAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPD 233 (377)
T COG4782 196 LAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPD 233 (377)
T ss_pred EEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCC
Confidence 5899999998876643 24467777777764
No 219
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=81.07 E-value=1 Score=32.13 Aligned_cols=17 Identities=24% Similarity=-0.017 Sum_probs=13.8
Q ss_pred ccchhHHHHHHHHhhcc
Q 028774 2 VSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~~p 18 (204)
|||+||.++.++..++.
T Consensus 221 G~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 221 GHSLGGGVQAEALKKEV 237 (365)
T ss_pred eccccHHHHHHHHHhcc
Confidence 99999999998665543
No 220
>COG3150 Predicted esterase [General function prediction only]
Probab=80.71 E-value=0.88 Score=28.79 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=21.9
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
+|-|+||..|..++.++- +++ |+++|..
T Consensus 64 vGssLGGY~At~l~~~~G--ira-v~~NPav 91 (191)
T COG3150 64 VGSSLGGYYATWLGFLCG--IRA-VVFNPAV 91 (191)
T ss_pred EeecchHHHHHHHHHHhC--Chh-hhcCCCc
Confidence 689999999999999876 444 5567763
No 221
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=79.14 E-value=2.5 Score=31.81 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.8
Q ss_pred EEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 159 FIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 159 ~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
+.+++ +||++..++|+.....+..|+..
T Consensus 463 ~r~y~-aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 463 LRIYE-AGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred EEEec-CcceeecCChHHHHHHHHHHHhh
Confidence 34555 79999999999999999998865
No 222
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.90 E-value=9.6 Score=27.63 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=50.0
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhcc----CCCccEEEcCCCCCCCCCC-CcchhhHHHHHHhhccCCCC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNF----DSVEDFIVLPNVGHCPQDE-APHLVNPLVESFVTRHATPP 192 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~~~~~~~ 192 (204)
..+.+.+++..|.+++.+..+.+.+. .-+++-+-+.++-|..|+. .|..+.+...+|++......
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~~ 294 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISSY 294 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhccccc
Confidence 45778888999999998877776332 3345556677889998864 69999999999999876543
No 223
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=75.34 E-value=3.9 Score=30.56 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=24.5
Q ss_pred CCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCC
Q 028774 129 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQD 171 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 171 (204)
..++++.|+.|++........ .-.....++|+|++|+.-+
T Consensus 377 tnviFtNG~~DPW~~lgv~~~---~~~~~~~~~I~g~~Hc~Dl 416 (434)
T PF05577_consen 377 TNVIFTNGELDPWRALGVTSD---SSDSVPAIVIPGGAHCSDL 416 (434)
T ss_dssp -SEEEEEETT-CCGGGS--S----SSSSEEEEEETT--TTGGG
T ss_pred CeEEeeCCCCCCcccccCCCC---CCCCcccEEECCCeeeccc
Confidence 478999999999987763332 2334556789999998554
No 224
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=72.25 E-value=1.5 Score=33.20 Aligned_cols=31 Identities=10% Similarity=-0.102 Sum_probs=25.2
Q ss_pred CccchhHHHHHHHHhh--ccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVM--EPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~--~p~~v~~lvl~~~~~ 31 (204)
+|+|.||..+..++.. .+..++++|+.++..
T Consensus 181 ~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~ 213 (493)
T cd00312 181 FGESAGGASVSLLLLSPDSKGLFHRAISQSGSA 213 (493)
T ss_pred EeecHHHHHhhhHhhCcchhHHHHHHhhhcCCc
Confidence 5999999998887776 356799999998764
No 225
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=71.33 E-value=7.1 Score=30.34 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=23.5
Q ss_pred ccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 2 VSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
|-|=||.+.-....++||.+.++|+--|.
T Consensus 506 GgSNGGLLvg~alTQrPelfgA~v~evPl 534 (648)
T COG1505 506 GGSNGGLLVGAALTQRPELFGAAVCEVPL 534 (648)
T ss_pred cCCCCceEEEeeeccChhhhCceeeccch
Confidence 77889988888888899988887766554
No 226
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=71.04 E-value=3 Score=28.73 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=26.3
Q ss_pred CccchhHHHHHHHHhhccc-hhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPE-ICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~-~v~~lvl~~~~~ 31 (204)
||.|.||.++-.++...|+ .|..+|.++++-
T Consensus 97 vg~SQGglv~Raliq~cd~ppV~n~ISL~gPh 128 (296)
T KOG2541|consen 97 VGYSQGGLVARALIQFCDNPPVKNFISLGGPH 128 (296)
T ss_pred EEEccccHHHHHHHHhCCCCCcceeEeccCCc
Confidence 6899999999999987654 599999998873
No 227
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=70.28 E-value=2.8 Score=31.61 Aligned_cols=31 Identities=13% Similarity=-0.145 Sum_probs=23.1
Q ss_pred CccchhHHHHHHHHhhc----------cchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVME----------PEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~----------p~~v~~lvl~~~~~ 31 (204)
+|||+||.++-.+|..- +=.++++++-++..
T Consensus 176 ~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~ 216 (462)
T PTZ00472 176 VGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLT 216 (462)
T ss_pred EeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecccc
Confidence 59999999988887653 12477888888764
No 228
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=69.52 E-value=2.6 Score=27.89 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=15.0
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|||.|+.+..++...+
T Consensus 100 aGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 100 AGHSQGSMHLLRLLKEE 116 (207)
T ss_pred EEeChHHHHHHHHHHHH
Confidence 59999999999998765
No 229
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.50 E-value=2.1 Score=33.21 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=27.0
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
.|.|-||.++..++.++|+.+.++|+--|.
T Consensus 554 ~G~SaGGlLvga~iN~rPdLF~avia~Vpf 583 (712)
T KOG2237|consen 554 EGGSAGGLLVGACINQRPDLFGAVIAKVPF 583 (712)
T ss_pred ecccCccchhHHHhccCchHhhhhhhcCcc
Confidence 388999999999999999999999987775
No 230
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=66.27 E-value=9.1 Score=29.90 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCeEEEeeCCCCCcchhHHHH----hhcc----CCCccEEEcCCCCCC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRA----YGNF----DSVEDFIVLPNVGHC 168 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~----~~~~----~~~~~~~~~~~~gH~ 168 (204)
..|.+|++|..|.++|....-+ +-+. .....+++++++-|+
T Consensus 555 GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHf 603 (690)
T PF10605_consen 555 GKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHF 603 (690)
T ss_pred CCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeec
Confidence 6799999999999998654322 1111 234678889998886
No 231
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.19 E-value=3.3 Score=31.98 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=20.8
Q ss_pred CccchhHHHHHHHHhh-----ccc------hhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVM-----EPE------ICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~-----~p~------~v~~lvl~~~~ 30 (204)
|||||||.++-.+... .|+ ...++|+++.+
T Consensus 531 I~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 531 IGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred EecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 6999999887765543 233 35677777766
No 232
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=58.64 E-value=20 Score=26.75 Aligned_cols=62 Identities=16% Similarity=0.312 Sum_probs=34.3
Q ss_pred CCCCeEEEeeCCCCCcchhHHHHhhccC--CCcc--EEEcCCCCCC---CCCCCcchhhHHHHHHhhccC
Q 028774 127 VKCPVLIAWGDKDPWEPIELGRAYGNFD--SVED--FIVLPNVGHC---PQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 127 i~~P~lii~g~~D~~~~~~~~~~~~~~~--~~~~--~~~~~~~gH~---~~~e~p~~~~~~i~~fl~~~~ 189 (204)
-..||+|+.|.-|.+-. +....+.+.+ .+.. .+.+||.|+. ..-++.+.+.+.|.+||....
T Consensus 188 ~p~P~VIv~gGlDs~qe-D~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p 256 (411)
T PF06500_consen 188 KPYPTVIVCGGLDSLQE-DLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRP 256 (411)
T ss_dssp S-EEEEEEE--TTS-GG-GGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHST
T ss_pred CCCCEEEEeCCcchhHH-HHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCC
Confidence 36799999999997543 4344444432 2333 3457888774 334556788899999998754
No 233
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=57.83 E-value=7 Score=27.85 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=14.9
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
.|.|+||.+|..+|..+
T Consensus 37 ~GTStGgiIA~~la~g~ 53 (312)
T cd07212 37 AGTSTGGILALALLHGK 53 (312)
T ss_pred EeeChHHHHHHHHHcCC
Confidence 48999999999999755
No 234
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=57.53 E-value=9 Score=32.90 Aligned_cols=33 Identities=15% Similarity=0.000 Sum_probs=26.0
Q ss_pred CccchhHHHHHHHHhhcc--chhcceEEeecccch
Q 028774 1 MVSEQTGLVGLQAAVMEP--EICRGMILLNISLRM 33 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p--~~v~~lvl~~~~~~~ 33 (204)
+|+|+|++++...|.... +....+|++|+.+..
T Consensus 2187 ~GYSyG~~l~f~ma~~Lqe~~~~~~lillDGspty 2221 (2376)
T KOG1202|consen 2187 AGYSYGACLAFEMASQLQEQQSPAPLILLDGSPTY 2221 (2376)
T ss_pred eccchhHHHHHHHHHHHHhhcCCCcEEEecCchHH
Confidence 599999999999997653 335669999998643
No 235
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=57.04 E-value=24 Score=20.29 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=35.4
Q ss_pred HHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCCCCC
Q 028774 146 LGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPPAS 194 (204)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~~~~ 194 (204)
....+.+.+|...+-.+|+.-|.+.....++-...|..++++..+.++.
T Consensus 39 LH~~L~~~FP~~~LP~fP~~~~~~~~~~~~~R~~~L~~Yl~~Ll~~~~e 87 (101)
T cd06896 39 LHSQLQKQFPSLALPEFPHWWHLPFTDSDHKRVRDLNHYLEQLLSGSRE 87 (101)
T ss_pred HHHHHHHHCccccccCCCCccccCcccHHHHHHHHHHHHHHHHHccCHH
Confidence 3455777789888888898778777666566677788888887765543
No 236
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=54.27 E-value=42 Score=23.50 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCC-CCCCCC-CCCcchhhHHHHHHhhc
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHCPQ-DEAPHLVNPLVESFVTR 187 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~ 187 (204)
...+||.++.|++ ...++..+..|+++.+.++. .|++.- .-.|++..+.|.+=.++
T Consensus 145 ~~gVPV~lVsGDd------~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~aa~~ 202 (270)
T cd08769 145 EFGVPVVLVAGDS------ELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELREAVKE 202 (270)
T ss_pred hcCCCEEEEecCH------HHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHHHHHH
Confidence 4689999999975 23344556679998887764 454333 34566666666554433
No 237
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=51.40 E-value=14 Score=19.00 Aligned_cols=36 Identities=8% Similarity=-0.075 Sum_probs=26.5
Q ss_pred ccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 152 NFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 152 ~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
+..|+..+... ++-+++..|.++++.+.+.+|-++.
T Consensus 23 e~~PDTvItL~-~G~k~vV~Es~~eVi~ki~~y~~~i 58 (60)
T PF06289_consen 23 EETPDTVITLT-NGKKYVVKESVEEVIEKIIEYRRKI 58 (60)
T ss_pred EEcCCeEEEEe-CCCEEEEECCHHHHHHHHHHHHHhc
Confidence 34677444444 4467888999999999999997654
No 238
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=50.89 E-value=84 Score=22.10 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=41.0
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcch-hhHH---HHHHhhcc
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHL-VNPL---VESFVTRH 188 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~-~~~~---i~~fl~~~ 188 (204)
+.|+.++- +-+-.....+++.+.+|+.+++.+-+..+++.-+.+++ +.+. +.+||.+.
T Consensus 5 ~~~IgvFD---SGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~ 66 (269)
T COG0796 5 QPPIGVFD---SGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLER 66 (269)
T ss_pred CCeEEEEE---CCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 34677763 23455678889999999999999999999999877643 3333 44555443
No 239
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=50.05 E-value=10 Score=24.66 Aligned_cols=17 Identities=6% Similarity=-0.111 Sum_probs=14.8
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|-|.||.+|..++..+
T Consensus 32 ~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 32 AGTSAGAITAALLALGY 48 (194)
T ss_pred EEECHHHHHHHHHHcCC
Confidence 48899999999999865
No 240
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=47.91 E-value=10 Score=26.93 Aligned_cols=17 Identities=12% Similarity=-0.036 Sum_probs=15.2
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|.|+|+.++..||..+
T Consensus 48 ~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 48 GGTSIGAFIGALYAEER 64 (306)
T ss_pred EEECHHHHHHHHHHcCC
Confidence 48999999999999875
No 241
>PRK10279 hypothetical protein; Provisional
Probab=47.33 E-value=6.7 Score=27.75 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=17.2
Q ss_pred CccchhHHHHHHHHhhccchhc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICR 22 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~ 22 (204)
.|.|+|+.++..||....+.+.
T Consensus 38 ~GtS~GAlvga~yA~g~~~~l~ 59 (300)
T PRK10279 38 AGCSIGSLVGAAYACDRLSALE 59 (300)
T ss_pred EEEcHHHHHHHHHHcCChHHHH
Confidence 4899999999999987654333
No 242
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=47.17 E-value=11 Score=24.00 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=15.5
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
.|-|.|+.+|..++...+
T Consensus 31 ~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 31 AGTSAGAIVAALLASGRD 48 (172)
T ss_pred EEECHHHHHHHHHHcCCC
Confidence 488999999999998764
No 243
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=45.81 E-value=14 Score=23.14 Aligned_cols=19 Identities=21% Similarity=0.041 Sum_probs=16.4
Q ss_pred cchhHHHHHHHHhhccchh
Q 028774 3 SEQTGLVGLQAAVMEPEIC 21 (204)
Q Consensus 3 hS~Gg~ia~~~a~~~p~~v 21 (204)
..||+.||..+-.++|+..
T Consensus 29 g~mG~GIA~~~k~~~P~~~ 47 (154)
T PHA02595 29 HTMGSGIAGQLAKAFPQIL 47 (154)
T ss_pred CcCChHHHHHHHHHcChHH
Confidence 4799999999999999743
No 244
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=45.18 E-value=7.4 Score=29.08 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=19.5
Q ss_pred CccchhHHHHHHHHhhccchhcce
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGM 24 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~l 24 (204)
.|-|.|+.+|..+|...++.+..+
T Consensus 106 sGTSaGAivAal~as~~~eel~~~ 129 (421)
T cd07230 106 SGSSAGSIVAAILCTHTDEEIPEL 129 (421)
T ss_pred EEECHHHHHHHHHHcCCHHHHHHH
Confidence 488999999999999877765544
No 245
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=44.91 E-value=12 Score=25.20 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=14.3
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|+|.|+.++...+.+.
T Consensus 53 ~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 53 FGYSQGAVVASNVLRRL 69 (225)
T ss_pred EEECHHHHHHHHHHHHH
Confidence 59999999999877654
No 246
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=43.92 E-value=23 Score=18.31 Aligned_cols=47 Identities=6% Similarity=-0.033 Sum_probs=34.0
Q ss_pred CcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 141 WEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
+..+...+. .+.+|+.++..+.| --++.-|.-++|.+.|.+|-++..
T Consensus 13 ~lN~~~IE~-ie~~PDttItLinG-kkyvVkEsveEVi~kI~~y~rkI~ 59 (67)
T COG1582 13 WLNAHHIET-IEAFPDTTITLING-KKYVVKESVEEVINKIIEYRRKIG 59 (67)
T ss_pred eeCHHHhhh-hhccCCcEEEEEcC-cEEEEcccHHHHHHHHHHHHHHhh
Confidence 344444443 34478888888874 677888899999999999987764
No 247
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=43.76 E-value=14 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.085 Sum_probs=15.8
Q ss_pred CccchhHHHHHHHHhhccc
Q 028774 1 MVSEQTGLVGLQAAVMEPE 19 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~ 19 (204)
+|-|.|+.+|..++..++.
T Consensus 33 ~GtSaGAi~aa~~a~g~~~ 51 (175)
T cd07228 33 AGSSIGALVGALYAAGHLD 51 (175)
T ss_pred EEeCHHHHHHHHHHcCCCH
Confidence 4889999999999987643
No 248
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=43.31 E-value=4.5 Score=29.63 Aligned_cols=14 Identities=29% Similarity=0.188 Sum_probs=10.9
Q ss_pred CccchhHHHHHHHH
Q 028774 1 MVSEQTGLVGLQAA 14 (204)
Q Consensus 1 vGhS~Gg~ia~~~a 14 (204)
||||+||.++..+.
T Consensus 155 vghSLGGLvar~AI 168 (405)
T KOG4372|consen 155 VGHSLGGLVARYAI 168 (405)
T ss_pred eeeecCCeeeeEEE
Confidence 69999998876443
No 249
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=43.11 E-value=14 Score=28.19 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=22.2
Q ss_pred ccchhHHHHHHHHhhccchhcceEEee
Q 028774 2 VSEQTGLVGLQAAVMEPEICRGMILLN 28 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~~p~~v~~lvl~~ 28 (204)
|-|+||.+|..++.+.-|.++.+.--.
T Consensus 208 GsS~GaivAsl~~v~~~eEl~~Ll~~~ 234 (543)
T KOG2214|consen 208 GSSAGAIVASLVGVRSNEELKQLLTNF 234 (543)
T ss_pred CCchhHHHHHHHhhcchHHHHHHhccc
Confidence 889999999999999877777765433
No 250
>PF08257 Sulfakinin: Sulfakinin family; InterPro: IPR013259 The sulfakinin (SK) family of neuropeptides have only been identified in crustaceans and insects. For most species there is the potential for producing two sulfakinin peptides, one has a short sulfakinin sequence. The function of the sulfakinins is difficult to assess. For the Periplaneta americana (American cockroach), various forms of the endogenous sulfakinins have been shown to be active on the hindgut, and also on the heart. In Calliphora vomitoria (Blue blowfly) the peptides act as neurotransmitters or neuromodulators, linking the brain with all thoracic and abdominal ganglia. In adults of Penaeus monodon (Penoeid shrimp) they appear to be restricted to a few neurones in the brain with a neural pathway extending along to the ventral thoracic and abdominal ganglia [].
Probab=42.35 E-value=14 Score=10.78 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=3.1
Q ss_pred CCCCCC
Q 028774 163 PNVGHC 168 (204)
Q Consensus 163 ~~~gH~ 168 (204)
++-||+
T Consensus 2 ~dyghm 7 (9)
T PF08257_consen 2 DDYGHM 7 (9)
T ss_pred Cccccc
Confidence 345664
No 251
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=42.31 E-value=20 Score=27.50 Aligned_cols=31 Identities=10% Similarity=-0.110 Sum_probs=22.1
Q ss_pred CccchhHHHHHHHHhhc--cchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVME--PEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~--p~~v~~lvl~~~~~ 31 (204)
+|||-||..+......- ...+++.|+.++..
T Consensus 213 ~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 213 FGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp EEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred eeecccccccceeeecccccccccccccccccc
Confidence 59999998777665542 35799999999863
No 252
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=42.26 E-value=15 Score=24.57 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=16.1
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
.|.|.|+.+|..+|...+
T Consensus 31 ~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 31 SGTSIGAINGALIAGGDP 48 (215)
T ss_pred EEECHHHHHHHHHHcCCc
Confidence 489999999999999875
No 253
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=42.02 E-value=88 Score=21.66 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=30.8
Q ss_pred EEEeeCCCCCcchhHHHHhhccC--CCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 132 LIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 132 lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
++|.|..|........+.+.+.. ++.++.++|-++. .|++..+...+.+++
T Consensus 2 ~~iGG~~~~~~~~~i~~~~~~lag~~~~rI~~iptAS~-----~~~~~~~~~~~~~~~ 54 (250)
T TIGR02069 2 VIIGGAEDKVGDREILREFVSRAGGEDAIIVIITSASE-----EPREVGERYITIFSR 54 (250)
T ss_pred eEEeCccccCChHHHHHHHHHHhCCCCceEEEEeCCCC-----ChHHHHHHHHHHHHH
Confidence 56777777755555666655553 3457888887663 355555555555444
No 254
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=41.97 E-value=9.3 Score=28.43 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=20.7
Q ss_pred CccchhHHHHHHHHhhccchhcceE
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMI 25 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lv 25 (204)
.|-|.|+.+|..+|...++.+..++
T Consensus 100 ~GtSAGAivaalla~~t~~el~~~~ 124 (407)
T cd07232 100 SGTSGGSLVAALLCTRTDEELKQLL 124 (407)
T ss_pred EEECHHHHHHHHHHcCCHHHHHHHH
Confidence 4889999999999997777776654
No 255
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=41.86 E-value=94 Score=23.44 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCeEEEeeCCCC--CcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 129 CPVLIAWGDKDP--WEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 129 ~P~lii~g~~D~--~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
.-+..|+|.+|. .||... ..+.+.+.+|| ||.+- ++-+.+++.|++=++..
T Consensus 397 ~~v~CiYG~~e~d~~Cp~l~-------~~~~~~v~lpG-gHHFd-~dy~~la~~il~~~~~r 449 (456)
T COG3946 397 ARVQCIYGQEEKDTACPSLK-------AKGVDTVKLPG-GHHFD-GDYEKLAKAILQGMRLR 449 (456)
T ss_pred ceeEEEecCccccccCCcch-------hhcceeEecCC-CcccC-ccHHHHHHHHHHHHHhc
Confidence 347888887654 443221 23567788997 77655 45567777777665433
No 256
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=40.95 E-value=47 Score=21.77 Aligned_cols=40 Identities=35% Similarity=0.329 Sum_probs=26.1
Q ss_pred CCCeEEEeeCCCC-CcchhHHHHhhcc-CCCccEEEcCCCCCC
Q 028774 128 KCPVLIAWGDKDP-WEPIELGRAYGNF-DSVEDFIVLPNVGHC 168 (204)
Q Consensus 128 ~~P~lii~g~~D~-~~~~~~~~~~~~~-~~~~~~~~~~~~gH~ 168 (204)
+..+|+.||-.|. -+..+..++.+++ .-+.-++++. +||+
T Consensus 63 ~tDVLiWWGH~~Hg~V~D~iVeRV~kRV~EGMGLiVLH-SGHf 104 (261)
T COG4813 63 KTDVLIWWGHKDHGAVEDEIVERVQKRVWEGMGLIVLH-SGHF 104 (261)
T ss_pred ccceEEEeccccccccchHHHHHHHHHHhcccceEEEe-ccch
Confidence 4678999998875 3444555555554 4455666665 6885
No 257
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=40.90 E-value=16 Score=25.26 Aligned_cols=20 Identities=5% Similarity=-0.187 Sum_probs=16.9
Q ss_pred CccchhHHHHHHHHhhccch
Q 028774 1 MVSEQTGLVGLQAAVMEPEI 20 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~ 20 (204)
+|.|.|+.+|..++...+++
T Consensus 32 ~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 32 IGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred EEECHHHHhHHHHHhCCcch
Confidence 48999999999999886554
No 258
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=40.52 E-value=18 Score=24.36 Aligned_cols=18 Identities=22% Similarity=-0.044 Sum_probs=15.3
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
+|-|.|+.+|..+|..++
T Consensus 33 ~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 33 SGTSAGALVGGLFASGIS 50 (221)
T ss_pred EEeCHHHHHHHHHHcCCC
Confidence 489999999999997653
No 259
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=40.38 E-value=16 Score=25.47 Aligned_cols=17 Identities=18% Similarity=-0.105 Sum_probs=15.0
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
.|-|+|+.++..||..+
T Consensus 43 ~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 43 GGTSIGSFVGGLYAREA 59 (269)
T ss_pred EEECHHHHHHHHHHcCC
Confidence 48899999999999874
No 260
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=38.01 E-value=17 Score=25.98 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=13.4
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|||+|=..|+.+|...
T Consensus 89 ~GhSlGE~aA~~aaG~l 105 (318)
T PF00698_consen 89 IGHSLGEYAALVAAGAL 105 (318)
T ss_dssp EESTTHHHHHHHHTTSS
T ss_pred eccchhhHHHHHHCCcc
Confidence 59999998888776543
No 261
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=37.45 E-value=21 Score=24.96 Aligned_cols=18 Identities=17% Similarity=-0.149 Sum_probs=14.5
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
+|||+|=..|+.++...+
T Consensus 88 ~GhS~GE~aAa~~aG~ls 105 (290)
T TIGR00128 88 AGHSLGEYSALVAAGALD 105 (290)
T ss_pred eecCHHHHHHHHHhCCCC
Confidence 699999998888876543
No 262
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=36.46 E-value=23 Score=25.75 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=14.5
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
.|.|.||.+|..++..+
T Consensus 46 aGTStGgIIAa~la~g~ 62 (344)
T cd07217 46 GGTSTGSIIAACIALGM 62 (344)
T ss_pred EEecHHHHHHHHHHcCC
Confidence 48999999999998754
No 263
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=36.28 E-value=1.2e+02 Score=21.29 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCC-CCC-CCCCCCcchhhHHHHHHhhc
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGH-CPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~gH-~~~~e~p~~~~~~i~~fl~~ 187 (204)
...+||.++.|++ . ..++..+..|+++.+.++. .|. ....-.|++..+.|.+=.++
T Consensus 145 ~~gVPV~lVsGDd-~-----~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a~~ 202 (266)
T cd08663 145 EYGVPVVLVTGDD-A-----ACAEARELGPGVETVAVKEAIGRFAARCLPPAEARALIREAAAE 202 (266)
T ss_pred hcCCCEEEEecCH-H-----HHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHHHHHH
Confidence 4689999998863 2 2233455689888887764 443 33345677777777766543
No 264
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=36.02 E-value=1.4e+02 Score=20.14 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=30.0
Q ss_pred CeEEEeeCCCCCcchhHHHHhhccC--CCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 130 PVLIAWGDKDPWEPIELGRAYGNFD--SVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 130 P~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
+++++.|..|...+.+..+.+.+.. ++.++.++|-++-. ++...+...+.+.+
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA~~~-----~~~~~~~~~~~~~~ 55 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAASEE-----PAEVGEEYRDVFER 55 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCCCcC-----hhHHHHHHHHHHHH
Confidence 4567777766545555555555553 35677777765532 34444444444444
No 265
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=35.26 E-value=33 Score=26.29 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=27.6
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeeccc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNISL 31 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 31 (204)
+|-|+-|.++..+=.+||+.+-+-|..+++.
T Consensus 177 FGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 177 FGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred ECCCchhHHHHHHHHhCchhheeecccccce
Confidence 5889999999999999999999998887764
No 266
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=34.71 E-value=1.3e+02 Score=21.18 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=35.1
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCC-CCCCCC-CCCcchhhHHHHHHhh
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHCPQ-DEAPHLVNPLVESFVT 186 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~ 186 (204)
...+||.++.|++- . .++..+.+|+++.+.++. .|++.- .-.|.+..+.|.+=.+
T Consensus 144 ~~gVPV~lvsGDd~-~-----~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a~ 200 (265)
T cd00281 144 YYGVPVVMVAGDAE-V-----CKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIREGTE 200 (265)
T ss_pred hcCCCEEEEecCHH-H-----HHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHHHHHHH
Confidence 56899999998642 2 233455579988887764 454333 3457777777766553
No 267
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=34.38 E-value=31 Score=26.39 Aligned_cols=41 Identities=27% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQD 171 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 171 (204)
...|++..|..|++....... ..-.++..+.|.|++|+.-+
T Consensus 433 atnVvf~NG~~DPWh~LG~~~---st~~~~~~~li~gtsHCaDM 473 (514)
T KOG2182|consen 433 ATNVVFPNGSLDPWHALGLQN---STDSSVVSILINGTSHCADM 473 (514)
T ss_pred cceEEecCCCCCchhhhcccc---CCCCCceEEEecCCcccccc
Confidence 567899999999886544322 22345667889999998553
No 268
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=34.29 E-value=25 Score=24.71 Aligned_cols=17 Identities=6% Similarity=-0.255 Sum_probs=13.9
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|||+|-..|..++...
T Consensus 81 ~GhS~GE~aAa~~aG~~ 97 (295)
T TIGR03131 81 AGYSVGEYAAAVVAGVL 97 (295)
T ss_pred eecCHHHHHHHHHhCCC
Confidence 69999999888877654
No 269
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=34.14 E-value=1.2e+02 Score=21.26 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=36.4
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCC-CCCCCCCCCcchhhHHHHHHhhcc
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
...+||+++.|++- + .++..+..|+++.+.++. -|.....-.|++..+.|.+=.++.
T Consensus 145 ~~gVPV~lvsGD~~-~-----~~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~~~~A 202 (263)
T cd08770 145 YLGVPVVFVSGDAG-L-----CAEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKGVKKA 202 (263)
T ss_pred hcCCCEEEEecCHH-H-----HHHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHHHHHH
Confidence 56899999998642 2 233455579888887764 343333346777777777766443
No 270
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=33.92 E-value=1.1e+02 Score=19.52 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=35.4
Q ss_pred CCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhc
Q 028774 129 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 187 (204)
..++++..--|.-.+....+.+.+.+.+-++..|--+|....-++-+.+.+.+..++.+
T Consensus 40 yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 40 YDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred CCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 45566665556555555555555556666677776666665555556666666666554
No 271
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=33.40 E-value=1.5e+02 Score=19.86 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=31.9
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNV 165 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
..|++.+.|..+...+++..+.+.+.+.+.=++.++.+
T Consensus 53 ~yP~ly~~g~~~~~~s~~e~~~Lr~Yl~~GGfl~~D~~ 90 (207)
T PF13709_consen 53 FYPFLYWPGHGDFPLSDEEIANLRRYLENGGFLLFDDR 90 (207)
T ss_pred hCCEEEEeCCCCCCCCHHHHHHHHHHHHcCCEEEEECC
Confidence 57999999999998888888888888777777778765
No 272
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=33.34 E-value=18 Score=26.74 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=20.7
Q ss_pred CccchhHHHHHHHHhhccchhcceEE
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMIL 26 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl 26 (204)
.|-|.|+.+|..+|..-++.+..++.
T Consensus 116 ~GtS~Gaivaa~~a~~~~~e~~~~l~ 141 (391)
T cd07229 116 TGTATGALIAALVGVHTDEELLRFLD 141 (391)
T ss_pred EEecHHHHHHHHHHcCCHHHHHHHHh
Confidence 38899999999999976776666553
No 273
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=33.09 E-value=28 Score=25.18 Aligned_cols=17 Identities=12% Similarity=-0.253 Sum_probs=13.9
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|||+|=..|+..|...
T Consensus 129 ~GHSlGE~aA~~~AG~l 145 (343)
T PLN02752 129 AGLSLGEYTALVFAGAL 145 (343)
T ss_pred eeccHHHHHHHHHhCCC
Confidence 59999999988887553
No 274
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=32.99 E-value=26 Score=24.59 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=13.7
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|||+|-..|+.++...
T Consensus 87 ~GhSlGE~aA~~~ag~~ 103 (298)
T smart00827 87 VGHSLGEIAAAYVAGVL 103 (298)
T ss_pred EecCHHHHHHHHHhCCC
Confidence 59999999988777543
No 275
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=32.95 E-value=20 Score=24.56 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=14.8
Q ss_pred CccchhHHHHHHHHhhccchh
Q 028774 1 MVSEQTGLVGLQAAVMEPEIC 21 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v 21 (204)
.|-|.|+.+|..|+. .|+++
T Consensus 36 ~GtSaGAl~aa~~a~-~~~~~ 55 (246)
T cd07222 36 AGASAGSLVAAVLLT-APEKI 55 (246)
T ss_pred EEECHHHHHHHHHhc-ChHHH
Confidence 378999999999984 35444
No 276
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=32.27 E-value=26 Score=24.92 Aligned_cols=15 Identities=0% Similarity=0.025 Sum_probs=13.4
Q ss_pred CccchhHHHHHHHHh
Q 028774 1 MVSEQTGLVGLQAAV 15 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~ 15 (204)
.|-|.||.+|+.++.
T Consensus 46 ~GTStGgiiA~~la~ 60 (308)
T cd07211 46 CGVSTGAILAFLLGL 60 (308)
T ss_pred EecChhHHHHHHHhc
Confidence 488999999999986
No 277
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=31.71 E-value=33 Score=24.38 Aligned_cols=18 Identities=11% Similarity=-0.091 Sum_probs=15.3
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
.|-|+|+.++..+|..+.
T Consensus 44 aGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 44 AGTSAGAIVAALYAAGMD 61 (306)
T ss_pred EecCHHHHHHHHHHcCCC
Confidence 388999999999998653
No 278
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=31.25 E-value=28 Score=24.48 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.8
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
.|.|.||.+|..++..+
T Consensus 39 ~GTSaGaiia~~la~g~ 55 (288)
T cd07213 39 AGTSAGSLIALGLALGY 55 (288)
T ss_pred EEeCHHHHHHHHHHcCc
Confidence 48999999999998765
No 279
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=31.19 E-value=24 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=18.6
Q ss_pred CccchhHHHHHHHHhhccchhcceE
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMI 25 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lv 25 (204)
.|-|.|+.+|..++...++.+..++
T Consensus 101 ~GsSaGAivaa~~~~~t~~El~~~~ 125 (323)
T cd07231 101 AGSSVGSIVCAIIATRTDEELQSFF 125 (323)
T ss_pred EEECHHHHHHHHHHcCCHHHHHHHH
Confidence 3789999999999886665555443
No 280
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=27 Score=25.15 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=38.6
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhh-----------------------------ccCCCccEEEcCCCCCCCCCCCcchhh
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYG-----------------------------NFDSVEDFIVLPNVGHCPQDEAPHLVN 178 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~gH~~~~e~p~~~~ 178 (204)
.+.|.|-.|..|.+|.....+.+. +...|..+..+..+||+...++|+...
T Consensus 325 Gv~V~VynG~lDlIc~T~G~~AWv~~l~w~~~p~f~~~~r~~~~~s~~l~gy~ktyknl~f~wilraghmvp~Dnp~~a~ 404 (414)
T KOG1283|consen 325 GVNVTVYNGQLDLICATMGTEAWVEKLEWSAKPSFQVSPRVGITVSRVLEGYEKTYKNLSFFWILRAGHMVPADNPAAAS 404 (414)
T ss_pred CceEEEEecccchhhcccchhhhhhheecCCCCccccceeeeccceeecchhhhhhccceeEEeecccCcccCCCHHHHh
Confidence 367888888888877643333222 123345667888899999999998877
Q ss_pred HHHHHH
Q 028774 179 PLVESF 184 (204)
Q Consensus 179 ~~i~~f 184 (204)
..+..+
T Consensus 405 hmlr~v 410 (414)
T KOG1283|consen 405 HMLRHV 410 (414)
T ss_pred hheeec
Confidence 665443
No 281
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=29.64 E-value=32 Score=21.96 Aligned_cols=17 Identities=18% Similarity=0.009 Sum_probs=14.6
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
.|-|.|+.+|..++...
T Consensus 33 ~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 33 SGTSAGAIVGALYAAGY 49 (175)
T ss_pred EEECHHHHHHHHHHcCC
Confidence 48899999999999764
No 282
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=29.16 E-value=37 Score=21.38 Aligned_cols=17 Identities=6% Similarity=-0.175 Sum_probs=13.9
Q ss_pred cchh-HHHHHHHHhhccc
Q 028774 3 SEQT-GLVGLQAAVMEPE 19 (204)
Q Consensus 3 hS~G-g~ia~~~a~~~p~ 19 (204)
.+|| |.++..+..++|+
T Consensus 30 G~WG~gGia~al~~k~p~ 47 (152)
T cd03331 30 GHWGRGGLFTALEKRSDQ 47 (152)
T ss_pred CCCCcchHHHHHHHhCCc
Confidence 3689 6899999998885
No 283
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=28.89 E-value=21 Score=24.90 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=20.9
Q ss_pred CccchhHHHHHHHHhhccchhcceEE
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMIL 26 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl 26 (204)
+|.|+|+.-+..|.++.+.+-.+.+.
T Consensus 45 ~GvSAGA~n~~aYls~Q~gra~~~~~ 70 (292)
T COG4667 45 VGVSAGALNLVAYLSKQRGRARRVIV 70 (292)
T ss_pred eeecHhHHhHHHHhhcCCchHHHHHH
Confidence 58899999999998888887666554
No 284
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=28.56 E-value=1.2e+02 Score=20.98 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=31.1
Q ss_pred hhHHHHhhccCCCccEEEcCCCCCCCCCCCc-chhhHHHHHH
Q 028774 144 IELGRAYGNFDSVEDFIVLPNVGHCPQDEAP-HLVNPLVESF 184 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p-~~~~~~i~~f 184 (204)
....+.+.+.+|+.+++.+-+..|++.=+++ +++.+.+.+-
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~ 52 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLEL 52 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHH
Confidence 4567788889999999999999999997765 4555554433
No 285
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=28.43 E-value=1e+02 Score=17.44 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=23.6
Q ss_pred hHHHHhhccCCCccEEEcCCCCCCCCCCCcchhh
Q 028774 145 ELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVN 178 (204)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~ 178 (204)
..++.+.+.+......+++-.||.+-+..|+...
T Consensus 9 s~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~ 42 (100)
T PF01751_consen 9 SDAKAIAKALGGEEYIVIATSGHLLELAKPEDYD 42 (100)
T ss_dssp HHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHH
T ss_pred HHHHHHHHHcCCCCEEEEEeCCcccccccccccc
Confidence 4455666666655677777789999988876643
No 286
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=28.28 E-value=20 Score=16.98 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=17.9
Q ss_pred CCCCCCCCcchhhHHHHHHhhccC
Q 028774 166 GHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 166 gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
||.+....++.|.+.+.++|.+..
T Consensus 10 g~~F~~g~ee~V~kk~y~YL~~ne 33 (43)
T PF14553_consen 10 GHRFLLGQEEKVSKKIYNYLNDNE 33 (43)
T ss_dssp TEEEEBT-EEEE-HHHHHHHHHST
T ss_pred eeEEeCCCeeehhHHHHHHHhcCC
Confidence 677778889999999999987653
No 287
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=27.81 E-value=53 Score=20.25 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=14.4
Q ss_pred HHHhhccchhcceEEeecc
Q 028774 12 QAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 12 ~~a~~~p~~v~~lvl~~~~ 30 (204)
.+...||+++.++.+++++
T Consensus 91 ~~~~~yP~rl~~i~iin~p 109 (159)
T PF00650_consen 91 LLQDHYPERLGKIYIINAP 109 (159)
T ss_dssp HHHHHSTTTEEEEEEES--
T ss_pred hhcccCCccceeEEEEecC
Confidence 3455799999999999987
No 288
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=27.46 E-value=38 Score=21.50 Aligned_cols=17 Identities=12% Similarity=-0.144 Sum_probs=13.5
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
.|-|.||.+|+.++...
T Consensus 32 ~GtS~Gal~a~~~~~~~ 48 (204)
T PF01734_consen 32 SGTSAGALNAALLALGY 48 (204)
T ss_dssp EEECCHHHHHHHHHTC-
T ss_pred EEcChhhhhHHHHHhCC
Confidence 37899999998887763
No 289
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=26.60 E-value=55 Score=22.90 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=33.3
Q ss_pred CCCCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCC-CC-CCCCCCCcchhhHHHHHHhhc
Q 028774 126 QVKCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPN-VG-HCPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 126 ~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~g-H~~~~e~p~~~~~~i~~fl~~ 187 (204)
...+|+.++.|++ ...++..+.+|+++.+.++. -| +....-.|++..+.|.+=.++
T Consensus 145 ~~GVPV~lVsGD~------~l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~i~~~a~~ 202 (265)
T PF04951_consen 145 YYGVPVVLVSGDD------ALCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACERIREAAKE 202 (265)
T ss_dssp HTT--EEEEEEEH------HHHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHHHHHHHHH
T ss_pred hcCCcEEEEeCcH------HHHHHHHHhCCCceEEEEecccCCCccccCCHHHHHHHHHHHHHH
Confidence 3578999999964 34455677889888877764 23 334455677777777665543
No 290
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=26.45 E-value=38 Score=23.02 Aligned_cols=19 Identities=11% Similarity=-0.111 Sum_probs=15.9
Q ss_pred CccchhHHHHHHHHhhccc
Q 028774 1 MVSEQTGLVGLQAAVMEPE 19 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~ 19 (204)
.|-|.|+.+|..|+...+.
T Consensus 34 ~G~SAGAl~aa~~asg~~~ 52 (233)
T cd07224 34 AGASAGSLAAACSASGLSP 52 (233)
T ss_pred EEEcHHHHHHHHHHcCCCH
Confidence 4889999999999987653
No 291
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=26.31 E-value=60 Score=20.44 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=16.1
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeecc
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
+|+++++.++..+|. | +.+|.+.+-
T Consensus 44 mG~~lp~AiGa~~a~--~---~~Vv~i~GD 68 (157)
T cd02001 44 MGLAGSIGLGLALGL--S---RKVIVVDGD 68 (157)
T ss_pred hhhHHHHHHHHHhcC--C---CcEEEEECc
Confidence 477777777777764 4 455666553
No 292
>COG3621 Patatin [General function prediction only]
Probab=26.19 E-value=52 Score=23.89 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.8
Q ss_pred ccchhHHHHHHHHhhcc
Q 028774 2 VSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 2 GhS~Gg~ia~~~a~~~p 18 (204)
|.|.||.+++.+|.-.+
T Consensus 48 GTSiGgilal~La~~ks 64 (394)
T COG3621 48 GTSIGGILALGLALGKS 64 (394)
T ss_pred CccHHHHHHHHHhcCCC
Confidence 88999999999997654
No 293
>PHA00026 cp coat protein
Probab=26.15 E-value=45 Score=19.01 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=25.8
Q ss_pred cEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCCC
Q 028774 158 DFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATPP 192 (204)
Q Consensus 158 ~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~~ 192 (204)
+++.++++|---.--.|.-++.-+.+|+.......
T Consensus 6 ~fvlvdnggtgdvtvapsnfangvaewis~nsrsq 40 (129)
T PHA00026 6 QFVLVDNGGTGDVTVAPSNFANGVAEWISNNSRSQ 40 (129)
T ss_pred EEEEEecCCccceEEeccccchhHHHHHhcCcccc
Confidence 46677776766555678889999999998766543
No 294
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=26.02 E-value=2e+02 Score=18.84 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=32.6
Q ss_pred CCCeEEEeeCCCCC-cchhHHHHhhccCCCccEEEcCCCCC-------CCCCCCcchhhHHHHHHhhc
Q 028774 128 KCPVLIAWGDKDPW-EPIELGRAYGNFDSVEDFIVLPNVGH-------CPQDEAPHLVNPLVESFVTR 187 (204)
Q Consensus 128 ~~P~lii~g~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~gH-------~~~~e~p~~~~~~i~~fl~~ 187 (204)
+.|++++-..+..+ ..+...+.+.+.-...-.++=|..|. ..-...++++.+.+.+++..
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~~ 180 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLKE 180 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhcc
Confidence 67999998876653 33333333333321122233333444 34456677777777776654
No 295
>PRK00865 glutamate racemase; Provisional
Probab=25.60 E-value=1.5e+02 Score=20.68 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=37.1
Q ss_pred CCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCc-chhhHHHHH
Q 028774 129 CPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAP-HLVNPLVES 183 (204)
Q Consensus 129 ~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p-~~~~~~i~~ 183 (204)
.|+.++- .-+-.....+.+.+.+|+..++.+-+..|++.-+++ +++.+.+.+
T Consensus 6 ~~IgvfD---SGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~ 58 (261)
T PRK00865 6 APIGVFD---SGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLE 58 (261)
T ss_pred CeEEEEE---CCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 3666652 224456778889999999999999999999997765 444444433
No 296
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=25.49 E-value=50 Score=15.83 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=9.6
Q ss_pred ccEEEcCCCCCCCC
Q 028774 157 EDFIVLPNVGHCPQ 170 (204)
Q Consensus 157 ~~~~~~~~~gH~~~ 170 (204)
++-=+|||-||+-.
T Consensus 30 aEsPv~PGn~hlQP 43 (45)
T PF08384_consen 30 AESPVFPGNGHLQP 43 (45)
T ss_pred CCCCccCCCcccCC
Confidence 45557888888644
No 297
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=25.44 E-value=41 Score=23.05 Aligned_cols=20 Identities=10% Similarity=-0.075 Sum_probs=16.5
Q ss_pred CccchhHHHHHHHHhhcc-ch
Q 028774 1 MVSEQTGLVGLQAAVMEP-EI 20 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p-~~ 20 (204)
.|-|.|+.+|..+|...+ +.
T Consensus 36 ~GtSAGAl~aa~~a~g~~~~~ 56 (243)
T cd07204 36 AGASAGAIVAAVVLCGVSMEE 56 (243)
T ss_pred EEEcHHHHHHHHHHhCCCHHH
Confidence 488999999999998764 44
No 298
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=25.39 E-value=46 Score=22.93 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=14.4
Q ss_pred CccchhHHHHHHHHhh
Q 028774 1 MVSEQTGLVGLQAAVM 16 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~ 16 (204)
.|-|.||.+|..++..
T Consensus 39 ~GtS~G~iia~~l~~~ 54 (258)
T cd07199 39 AGTSTGGIIALGLALG 54 (258)
T ss_pred eeccHHHHHHHHHhcC
Confidence 4899999999999886
No 299
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.15 E-value=45 Score=24.31 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 188 (204)
+.|+....+.+|...+...+-=+.++.++-++.++| |+|..|-. .|..||.+.
T Consensus 214 ~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~-------CIDpWL~~~ 266 (348)
T KOG4628|consen 214 KLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVN-------CIDPWLTQT 266 (348)
T ss_pred hCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhc-------cchhhHhhc
Confidence 568888888777655533333355667788999999 99998854 456666654
No 300
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=25.08 E-value=84 Score=16.01 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=10.5
Q ss_pred CCCCCcchhhHHHHHHhhcc
Q 028774 169 PQDEAPHLVNPLVESFVTRH 188 (204)
Q Consensus 169 ~~~e~p~~~~~~i~~fl~~~ 188 (204)
+.+++-..+..+|..||-+.
T Consensus 22 P~WDQ~Rl~~aALa~FL~Qn 41 (57)
T PF10929_consen 22 PNWDQYRLFQAALAGFLLQN 41 (57)
T ss_pred CCchHHHHHHHHHHHHHHHc
Confidence 44444555555555555444
No 301
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.61 E-value=53 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.077 Sum_probs=19.3
Q ss_pred CccchhHHHHHHHHhhccchhcceEEeec
Q 028774 1 MVSEQTGLVGLQAAVMEPEICRGMILLNI 29 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 29 (204)
||..|||+. ..+|.+|-.+|.++.+...
T Consensus 79 iGCGWG~l~-~~aA~~y~v~V~GvTlS~~ 106 (283)
T COG2230 79 IGCGWGGLA-IYAAEEYGVTVVGVTLSEE 106 (283)
T ss_pred eCCChhHHH-HHHHHHcCCEEEEeeCCHH
Confidence 578888754 5566777777877776544
No 302
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=24.52 E-value=62 Score=16.53 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhhcc
Q 028774 5 QTGLVGLQAAVMEP 18 (204)
Q Consensus 5 ~Gg~ia~~~a~~~p 18 (204)
.||.+++.-++.||
T Consensus 11 ~ggfVg~iG~a~Yp 24 (58)
T PF15061_consen 11 VGGFVGLIGAALYP 24 (58)
T ss_pred HHHHHHHHHHHHhh
Confidence 58888888888888
No 303
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=24.38 E-value=41 Score=23.99 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=13.0
Q ss_pred CccchhHHHHHHHHh
Q 028774 1 MVSEQTGLVGLQAAV 15 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~ 15 (204)
.|-|.||.+|+.++.
T Consensus 47 ~GTStGgiiA~~l~~ 61 (309)
T cd07216 47 GGTSTGGLIAIMLGR 61 (309)
T ss_pred eeccHHHHHHHHhcc
Confidence 489999999999874
No 304
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=24.01 E-value=38 Score=23.54 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=18.5
Q ss_pred cchhHHHHHHHHhhccchhcce
Q 028774 3 SEQTGLVGLQAAVMEPEICRGM 24 (204)
Q Consensus 3 hS~Gg~ia~~~a~~~p~~v~~l 24 (204)
|=-||..|-+|..+||+....+
T Consensus 111 HP~GGSYA~RYl~~~p~~~~~l 132 (262)
T PF11884_consen 111 HPGGGSYADRYLEKHPEKNEEL 132 (262)
T ss_pred CCCCCcHHHHHHHHCCcchhHH
Confidence 5579999999999999876665
No 305
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=23.38 E-value=49 Score=25.92 Aligned_cols=17 Identities=0% Similarity=-0.296 Sum_probs=15.0
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
+|||+|=..|+..|.-.
T Consensus 270 ~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 270 LGYSKGEASMWASLGVW 286 (538)
T ss_pred eecCHHHHHHHHHhCCC
Confidence 69999999999888766
No 306
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=67 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=20.4
Q ss_pred CccEEEcCCCCCCCCCCCcchhhHHHHHHhhccCCC
Q 028774 156 VEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHATP 191 (204)
Q Consensus 156 ~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~~~ 191 (204)
+.+-+.+| |||.+|++ .+.+|+++.+.-
T Consensus 310 ~~~pKrLp-CGHilHl~-------CLknW~ERqQTC 337 (491)
T COG5243 310 DMTPKRLP-CGHILHLH-------CLKNWLERQQTC 337 (491)
T ss_pred cCCccccc-ccceeeHH-------HHHHHHHhccCC
Confidence 34456677 99999975 678899887543
No 307
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.31 E-value=1e+02 Score=19.72 Aligned_cols=34 Identities=3% Similarity=-0.162 Sum_probs=19.7
Q ss_pred CCCeEEEeeCCCCCcchhHHHHhhccCCCccEEEcC
Q 028774 128 KCPVLIAWGDKDPWEPIELGRAYGNFDSVEDFIVLP 163 (204)
Q Consensus 128 ~~P~lii~g~~D~~~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
..++.++.|+.+ +-....+.+.+..|+.+++-..
T Consensus 46 ~~~v~llG~~~~--~~~~~~~~l~~~yp~l~i~g~~ 79 (171)
T cd06533 46 GLRVFLLGAKPE--VLEKAAERLRARYPGLKIVGYH 79 (171)
T ss_pred CCeEEEECCCHH--HHHHHHHHHHHHCCCcEEEEec
Confidence 346666655444 2234445677778887776543
No 308
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.84 E-value=61 Score=25.22 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=23.9
Q ss_pred CccchhHHHHHHHHhhc-----cchhcceEEeecccc
Q 028774 1 MVSEQTGLVGLQAAVME-----PEICRGMILLNISLR 32 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~-----p~~v~~lvl~~~~~~ 32 (204)
||+|+|+.+...+...- -..|..+++++.+..
T Consensus 452 VGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~ 488 (633)
T KOG2385|consen 452 VGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVP 488 (633)
T ss_pred eeeccchHHHHHHHHHHhhcccccceeeeeeccCCcc
Confidence 79999999988766532 245888899888743
No 309
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=22.78 E-value=51 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.5
Q ss_pred CccchhHHHHHHHHhhc
Q 028774 1 MVSEQTGLVGLQAAVME 17 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~ 17 (204)
.|.|.||.+|..++...
T Consensus 48 aGTStGgiiA~~la~~~ 64 (349)
T cd07214 48 AGTSTGGLITAMLTAPN 64 (349)
T ss_pred eeCCHHHHHHHHHhcCC
Confidence 48999999999999753
No 310
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=22.58 E-value=58 Score=22.41 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=15.5
Q ss_pred CccchhHHHHHHHHhhcc
Q 028774 1 MVSEQTGLVGLQAAVMEP 18 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p 18 (204)
.|-|.|+.+|..+|...+
T Consensus 35 ~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 35 SGASAGALAACCLLCDLP 52 (245)
T ss_pred EEEcHHHHHHHHHHhCCc
Confidence 388999999999998754
No 311
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=22.51 E-value=56 Score=23.59 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=12.7
Q ss_pred CccchhHHHHHHHHh
Q 028774 1 MVSEQTGLVGLQAAV 15 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~ 15 (204)
.|.|.||.+|+.++.
T Consensus 45 ~GTStGgiia~~l~~ 59 (329)
T cd07215 45 AGTSTGGILTCLYLC 59 (329)
T ss_pred eccCHHHHHHHHHhC
Confidence 489999999998764
No 312
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=22.17 E-value=60 Score=16.66 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=13.0
Q ss_pred CCCCCCcchhhHHHHHH
Q 028774 168 CPQDEAPHLVNPLVESF 184 (204)
Q Consensus 168 ~~~~e~p~~~~~~i~~f 184 (204)
..++++|+++...|...
T Consensus 20 Lv~Y~~Pe~Vi~iIN~l 36 (63)
T PF03295_consen 20 LVFYEDPEEVINIINEL 36 (63)
T ss_pred eeeccCHHHHHHHHHHh
Confidence 35678999999888663
No 313
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=21.75 E-value=2.3e+02 Score=18.70 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=43.1
Q ss_pred CCCCeEEEeeCCCCCcchhHHHHhhccCCC--ccEEEcCCCC--CCCCCCCcchhhHHHHHHhhccC
Q 028774 127 VKCPVLIAWGDKDPWEPIELGRAYGNFDSV--EDFIVLPNVG--HCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 127 i~~P~lii~g~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~g--H~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
...+.+++.+-+-+.++++....+.+.... ...+....-| |-.+--.+..+...+.+++.+..
T Consensus 85 ~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~~~~~~g~~~Pl~aly~~~l~~~l~~~l~~g~ 151 (192)
T COG0746 85 FGTEWVLVLPCDMPFIPPELVERLLSAFKQTGAAIVPAHDDGRLEPLFALYHRALLPALEEYLAKGE 151 (192)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhhcccCCcEEEeCCCCceeeEEEEehHHHHHHHHHHHHhCC
Confidence 346778888888889999998888776442 3344433346 43333347888899999888765
No 314
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=21.72 E-value=58 Score=13.32 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=5.9
Q ss_pred HHHhhccchh
Q 028774 12 QAAVMEPEIC 21 (204)
Q Consensus 12 ~~a~~~p~~v 21 (204)
.+|..+||++
T Consensus 16 ~~aLl~PErF 25 (25)
T PF09604_consen 16 FYALLRPERF 25 (25)
T ss_pred HHHHhCcccC
Confidence 3455677764
No 315
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=21.48 E-value=63 Score=23.10 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=16.8
Q ss_pred CccchhHHHHHHHHhhccchh
Q 028774 1 MVSEQTGLVGLQAAVMEPEIC 21 (204)
Q Consensus 1 vGhS~Gg~ia~~~a~~~p~~v 21 (204)
.|.|.|+.+|..++....+.+
T Consensus 102 ~GtSaGAi~aa~~~~~~~~El 122 (298)
T cd07206 102 SGSSAGAIVAALLGTHTDEEL 122 (298)
T ss_pred EEEcHHHHHHHHHHcCCcHHH
Confidence 488999999999998655444
No 316
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=21.41 E-value=58 Score=17.35 Aligned_cols=57 Identities=21% Similarity=0.096 Sum_probs=31.9
Q ss_pred EEeeCCCCCcchhHHHHhhcc--CCCccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 133 IAWGDKDPWEPIELGRAYGNF--DSVEDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 133 ii~g~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
+=.|..|.+.|......+.+. ++.-.+--++=-.++.+.|-|++.++.+.+-|++..
T Consensus 5 in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~~a~~v~~~l~~~~ 63 (74)
T PF03880_consen 5 INVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEEVAEKVLEALNGKK 63 (74)
T ss_dssp ES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT--
T ss_pred EEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHHHHHHHHHHhcCCC
Confidence 345888999888888887776 444433222222457777888888888888777543
No 317
>COG3411 Ferredoxin [Energy production and conversion]
Probab=20.26 E-value=1.4e+02 Score=15.68 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=23.9
Q ss_pred ccEEEcCCCCCCCCCCCcchhhHHHHHHhhccC
Q 028774 157 EDFIVLPNVGHCPQDEAPHLVNPLVESFVTRHA 189 (204)
Q Consensus 157 ~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~~ 189 (204)
-.++++|+ |||--.-.|+..-+++.+.+.+-.
T Consensus 18 Pvl~vYpe-gvWY~~V~p~~a~rIv~~hl~~Gr 49 (64)
T COG3411 18 PVLVVYPE-GVWYTRVDPEDARRIVQSHLLGGR 49 (64)
T ss_pred CEEEEecC-CeeEeccCHHHHHHHHHHHHhCCC
Confidence 35677786 788777788888888888887544
No 318
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=20.13 E-value=83 Score=16.78 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhccchhcceEEeecc
Q 028774 6 TGLVGLQAAVMEPEICRGMILLNIS 30 (204)
Q Consensus 6 Gg~ia~~~a~~~p~~v~~lvl~~~~ 30 (204)
||.+++++|....++=..+.++...
T Consensus 7 gG~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 7 GGFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp SSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cCHHHHHHHHHHHHhCcEEEEEecc
Confidence 6788888888776666677777765
Done!