BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028776
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 108/186 (58%), Gaps = 10/186 (5%)
Query: 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR 62
S+F LW + E +LILG+D AGKTT+L +L+ + + + PT+G N+
Sbjct: 7 SMFDKLWG---SNKELRILILGLDGAGKTTILYRLQ-----IGEVVTTK--PTIGFNVET 56
Query: 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
+ N KL WDLGGQ +R W YY + AV+FV+D+ R + L +L+ E+
Sbjct: 57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 116
Query: 123 LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
LQ A LL+ ANKQD P A+SA E+++ L+L +L +R A S G GI E ++WL++
Sbjct: 117 LQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLID 176
Query: 183 VMERSK 188
V++ +
Sbjct: 177 VIKEEQ 182
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 11/190 (5%)
Query: 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
M ++F L+K +F K E +L++G+D AGKTT+L KLK + + +PT+G
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGF 51
Query: 59 NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 118
N+ +E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L
Sbjct: 52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 111
Query: 119 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
++L+ A LL+ ANKQDLP+A++A E+ L L L R +A G G+ E ++
Sbjct: 112 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD 171
Query: 179 WLVEVMERSK 188
WL + K
Sbjct: 172 WLSNQLRNQK 181
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 11/182 (6%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F E +L++G+D AGKTT+L KLK V + + PT+G N+ ++
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVETVQY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
N WD+GGQ +RS+W YY V+FV+D+ SR +++ ++++L ++L+
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
A L+ ANKQDLP+A+SA E+ L L + R +A G G+ E +EWL ++
Sbjct: 119 AAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLK 178
Query: 186 RS 187
S
Sbjct: 179 NS 180
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNI 60
++F L+K +F K E +L++G+D AGKTT+L KLK + + +PT+G N+
Sbjct: 2 NIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNV 52
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
+E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L
Sbjct: 53 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 112
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
++L+ A LL+ ANKQDLP+A++A E+ L L L R +A G G+ E ++WL
Sbjct: 113 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 172
Query: 181 VEVMERSK 188
+ K
Sbjct: 173 SNQLRNQK 180
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 102/183 (55%), Gaps = 11/183 (6%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F K + +L++G+D AGKTT+L K+K V + + PT+G N+ +E
Sbjct: 8 LFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTI---------PTIGFNVETVEF 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
N WD+GGQ +R +W YY ++FV+D+ R +D++ L +++ E+L+
Sbjct: 59 RNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKD 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
A +L+ ANKQDLP+A+SA E+ L L + ER ++ G G+ E +WL +
Sbjct: 119 AIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178
Query: 186 RSK 188
+K
Sbjct: 179 NAK 181
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 11/175 (6%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F E +L++G+D AGKTT+L KLK V + +PT+G N+ ++
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT---------TIPTIGFNVETVQY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
N WD+GGQ +RS+W YY V+FVID+ SR +++ ++++L ++L+
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
A L+ ANKQDLP+A+SA E+ L L + R ++ G G+ E +EWL
Sbjct: 119 AVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWL 173
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 101/182 (55%), Gaps = 11/182 (6%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F E +L++G+D AGKTT+L KLK V + + PT+G N+ ++
Sbjct: 8 LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVECVQY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
N WD+GGQ +RS+W YY V+FV+D+ SR +++ ++++L ++L
Sbjct: 59 CNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCN 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
A L+ ANKQDLP+A+SA E+ L L + R +A G G+ E +EWL ++
Sbjct: 119 AAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLK 178
Query: 186 RS 187
S
Sbjct: 179 NS 180
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 104/184 (56%), Gaps = 13/184 (7%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ IF K + +L++G+D AGKTT+L KLK + + + PT+G N+ +E
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEY 70
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
N WD+GGQ +R +W Y++ ++FV+D+ R ++S L+K+L+ ++L+
Sbjct: 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD 130
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
A LL+ ANKQD+P+A+ EL L L+ L R +A G G+ + ++WL E
Sbjct: 131 AVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH--E 188
Query: 186 RSKR 189
SKR
Sbjct: 189 LSKR 192
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 11/172 (6%)
Query: 18 FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+L++G+D AGKTT+L KLK V + + PT+G N+ ++ N WD+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVETVQYKNISFTVWDV 51
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GGQ +RS+W YY V+FV+D+ SR +++ ++++L ++L+ A L+ ANKQ
Sbjct: 52 GGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERS 187
DLP+A+SA E+ L L + R +A G G+ E +EWL ++ S
Sbjct: 112 DLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKNS 163
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 101/178 (56%), Gaps = 11/178 (6%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGR 62
F L+ +F K E +L++G+D AGKTT+L KLK + + + PT+G N+
Sbjct: 8 FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVET 58
Query: 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
+E N WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L ++
Sbjct: 59 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 118
Query: 123 LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
L+ A LL+ ANKQDLP+A++A E+ L L L +R ++ G G+ E ++WL
Sbjct: 119 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 176
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
IF E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 60
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD+GGQ +R +W YY ++FV+D A R ++++ L +++ + +++ A +LI
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
ANKQDLPDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
IF E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 59
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD+GGQ +R +W YY ++FV+D A R ++++ L +++ + +++ A +LI
Sbjct: 60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 119
Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
ANKQDLPDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 120 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 169
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+G
Sbjct: 16 ELRLLMLGLDNAGKTTILKKFN-------GEDIDTISPTLGFNIKTLEHRGFKLNIWDVG 68
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ LRS W Y+E +++V+D+A R +D + L+ +L E L GA LLI ANKQD
Sbjct: 69 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 128
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
LP A+S++ + L+L + + S G + ++WL++
Sbjct: 129 LPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLD 174
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 8/178 (4%)
Query: 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
LF +W+ +F E V+I+G+D AGKTT+L + +S E + PT+G N+ I
Sbjct: 4 LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEI 55
Query: 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
++N++ + WD+GGQ LRS W YY V+ V+D+ R ++ L K+L +EDL
Sbjct: 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 115
Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
+ A LLI ANKQD+ + ++ E++++L L + + +A G G+ + +EW++
Sbjct: 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 8/178 (4%)
Query: 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
LF +W+ +F E V+I+G+D AGKTT+L + +S E + PT+G N+ I
Sbjct: 4 LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEI 55
Query: 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
++N++ + WD+GGQ LRS W YY V+ V+D+ R ++ L K+L +EDL
Sbjct: 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 115
Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
+ A LLI ANKQD+ + ++ E++++L L + + +A G G+ + +EW++
Sbjct: 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 13/184 (7%)
Query: 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
L+ +F K + +L++G+D AGKTT+L KLK + + + PT+G N+ +E
Sbjct: 8 LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEY 58
Query: 66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
N WD+GGQ +R +W+ Y++ ++FV+D+ R ++ L+K+L ++L+
Sbjct: 59 KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRD 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
A LL+ ANKQDLP+A++ E+ L L+ L R +A G G+ E ++WL E
Sbjct: 119 AVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN--E 176
Query: 186 RSKR 189
SKR
Sbjct: 177 LSKR 180
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
+F K E +L++G+D AGKTT+L KLK + + +PT+G N+ +E N
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNVETVEYKNIS 210
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
WD+GGQ +R +W Y++ ++FV+D+ R +++ L ++L ++L+ A LL
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 270
Query: 130 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
+ ANKQDLP+A++A E+ L L L R +A G G+ E ++WL + K
Sbjct: 271 VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+G
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 70
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ LRS W Y+E +++V+D+A R +D + L+ +L E L GA LLI ANKQD
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
LP A+S + + L+L + + S G + ++WL++
Sbjct: 131 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 176
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+G
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 70
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ LRS W Y+E +++V+D+A R +D + L+ +L E L GA LLI ANKQD
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
LP A+S + + L+L + + S G + ++WL++
Sbjct: 131 LPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 176
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
E +LILG+D AGKTT+L +L+ V + + PT+G N+ + N K WD
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWD 52
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
LGGQ +R W YY AV++V+D+ R SK+ L +L E+L+ A L++ ANK
Sbjct: 53 LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 112
Query: 135 QDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
QD+ A++ E+A L L L +R S G G+ E++EWLVE ++
Sbjct: 113 QDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 163
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
IF E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 8 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 60
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD+GG +R +W YY ++FV+D A R ++++ L +++ + +++ A +LI
Sbjct: 61 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
ANKQDLPDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 7/169 (4%)
Query: 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
+ E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNV 370
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD+GGQ +R +W YY ++FV+D A R ++++ L +++ + +++ A +LI A
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 430
Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
NKQDLPDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 431 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 14/180 (7%)
Query: 4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKL---KSVYSNVEGLPPDRIVPTVGLNI 60
+F LW +F E V+I+G+D AGKTT+L + + V+++ PT+G N+
Sbjct: 4 IFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS----------PTIGSNV 52
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
I V N+ + WD+GGQ LRS W YY ++ V+D+ R +K L ++L +
Sbjct: 53 EEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH 112
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180
EDL+ A +LI ANKQD+ ++A E+++YL L + + ++ G G+ + +EW+
Sbjct: 113 EDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWM 172
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
K +F K E + ++G+ +GKTT + + S N + ++PTVG N+ +I N
Sbjct: 24 KALFWKEEMELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVT 77
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
+ WD+GGQP RS+WE+Y A+V+++DAA + E SK L +L LQG P+L
Sbjct: 78 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 137
Query: 130 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
+L NK+DLP A+ EL ++L + +R ++S + I +++WL++
Sbjct: 138 VLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 17 EFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
E +LILG+D AGKTT+L +L+ V + + PT+G N+ + N K WD
Sbjct: 4 EMRILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWD 54
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
LGG +R W YY AV++V+D+ R SK+ L +L E+L+ A L++ ANK
Sbjct: 55 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 114
Query: 135 QDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
QD+ A+++ E+A L L L +R S G G+ E++EWLVE ++
Sbjct: 115 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+L+LG+D AGKTT+L KLK S +PTVG N+ + N K WD+GG
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGG 53
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q +R +W YY ++FV+D A R ++++ L +++ + +++ A +LI ANKQDL
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
PDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 114 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+L+LG+D AGKTT+L KLK S +PTVG N+ + N K WD+GG
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGG 53
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q +R +W YY ++FV+D A R ++++ L +++ + +++ A +LI ANKQDL
Sbjct: 54 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
PDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 114 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 96/173 (55%), Gaps = 11/173 (6%)
Query: 12 IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
+ K E +L++G+D AGKT++L KLK + + + PT+G N+ +E N
Sbjct: 12 LLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTI---------PTIGFNVETVEYKNIS 62
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
WD+GGQ +R +W YY+ A++FV+D+ R +++ L K+L ++++ A LL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILL 122
Query: 130 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
+ ANK DLP A+S E+ L L+ + R + +G G+ E ++WL +
Sbjct: 123 VFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLAD 175
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 9/178 (5%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
+K E + ++G+ +GKTT + + S N + ++PTVG N+ +I N + W
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVTIKLW 72
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D+GGQP RS+WE+Y A+V+++DAA + E SK L +L LQG P+L+L N
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 134 KQDLPDAVSADELARYLDLKKLDER-VCMFEAVSGYDGFGIKESVEWLVEVMERSKRT 190
K+DLP A+ EL ++L + +R +C + ++S + I +++WL++ +S+R+
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQDREICCY-SISCKEKDNIDITLQWLIQ-HSKSRRS 188
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
Query: 18 FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+L++G+D AGKTT+L KLK + + + PT+G N+ +E N WD+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDV 51
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GGQ +R +W Y++ ++FV+D+ R +++ L ++L ++L+ A LL+ ANKQ
Sbjct: 52 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 111
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
DLP+A++A E+ L L L R +A G G+ E ++WL + K
Sbjct: 112 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K WD+G
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVG 55
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
G +R +W YY ++FV+D A R ++++ L +++ + +++ A +LI ANKQD
Sbjct: 56 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 115
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
LPDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 116 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 160
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTT+L KLK S +PTVG N+ + N K WD+G
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVG 54
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
G +R +W YY ++FV+D A R ++++ L +++ + +++ A +LI ANKQD
Sbjct: 55 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 114
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
LPDA+ E+ L L ++ +R + G G+ E + WL
Sbjct: 115 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 159
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
+L+LG+D AGKTT+L+K G D I PT+G NI +E KL WD+GG
Sbjct: 2 LRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGG 54
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
LRS W Y+E +++V+D+A R +D + L+ +L E L GA LLI ANKQDL
Sbjct: 55 LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114
Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
P A+S + + L+L + + S G + ++WL++
Sbjct: 115 PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 159
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
+K E + ++G+ +GKTT + + S G + ++PTVG N+ ++ N + W
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIW 72
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D+GGQP RS+WE+Y +A+V++IDAA + E S+ L +L LQG P+L+L N
Sbjct: 73 DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGN 132
Query: 134 KQDLPDAVSADELARYLDLKKLDER-VCMFEAVSGYDGFGIKESVEWLVE 182
K+DLP+A+ +L ++L + +R +C + ++S + I +++WL++
Sbjct: 133 KRDLPNALDEKQLIEKMNLSAIQDREICCY-SISCKEKDNIDITLQWLIQ 181
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E V+I+G+D AGKTT+L + +S E + PT+G N+ I ++N++ + WD+G
Sbjct: 21 EHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEIVINNTRFLMWDIG 73
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ LRS W YY V+ V+D+ R ++ L K+L +EDL+ A LLI ANKQD
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
+ + ++ E++++L L + + +A G G+ + +EW++
Sbjct: 134 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
+ E V+I+G+D AGKTT+L + +S E + PT+G N+ I ++N++ + W
Sbjct: 19 SHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEIVINNTRFLMW 71
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D+GGQ LRS W YY V+ V+D+ R ++ L K+L +EDL+ A LLI AN
Sbjct: 72 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 131
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
KQD+ + ++ E++++L L + + +A G G+ + +EW++
Sbjct: 132 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 179
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 7/173 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTTLL++L S E + I PT G NI ++ KL WD+G
Sbjct: 17 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIG 69
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ +R W Y+E +++VID+A RFE++ L ++L E L P+LI ANKQD
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 129
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189
L A A E+A L+L + +RV ++ S G G+++ + W+ + + K+
Sbjct: 130 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 182
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 99/173 (57%), Gaps = 7/173 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +L+LG+D AGKTTLL++L S E + I PT G NI ++ KL WD+G
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIG 68
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ +R W Y+E +++VID+A RFE++ L ++L E L P+LI ANKQD
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKR 189
L A A E+A L+L + +RV ++ S G G+++ + W+ + + K+
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKK 181
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 7/162 (4%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
+L LG+D AGKTT+L KLK S +PTVG N+ + N K WD+GGQ
Sbjct: 3 ILXLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGGQD 55
Query: 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
+R +W YY ++FV+D A R ++++ L +++ + + + A +LI ANKQDLPD
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115
Query: 140 AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
A E+ L L ++ +R + G G+ E + WL
Sbjct: 116 AXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 97/167 (58%), Gaps = 7/167 (4%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+E +L+LG+D AGKTTLL++L S E + I PT G NI ++ KL WD+
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GGQ +R W Y+E +++VID+A RFE++ L ++L E L P+LI ANKQ
Sbjct: 56 GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 115
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
DL A A E+A L+L + +RV ++ S G G+++ + W+ +
Sbjct: 116 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 162
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 11/173 (6%)
Query: 18 FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+L++G+D AGKTT+L KLK + + + PT+G N+ +E N WD+
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDV 53
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GG +R +W Y++ ++FV+D+ R +++ L ++L ++L+ A LL+ ANKQ
Sbjct: 54 GGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 113
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
DLP+A++A E+ L L L R +A G G+ E ++WL + K
Sbjct: 114 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 166
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 108/177 (61%), Gaps = 13/177 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E HVL LG+D +GKTT++ KLK SN + I+PT+G +I + + S+ +D+
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKP--SNAQS---QNILPTIGFSIEKFKSSSLSFTVFDMS 75
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG--APLLILANK 134
GQ R++WE YY+E A++FVID++ R +K L+ +L + D++ P+L ANK
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANK 135
Query: 135 QDLPDAVSADELARYLDLKKLDER---VCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
DL DAV++ ++++ L L+ + ++ +C +A+ G G++E V+WL + ++ K
Sbjct: 136 MDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGE---GLQEGVDWLQDQIQTVK 189
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 26 DKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW 85
D AGKTT+L+K G D I PT+G NI +E KL WD+GGQ LRS W
Sbjct: 27 DNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 79
Query: 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 145
Y+E +++V+D+A R +D + L+ +L E L GA LLI ANKQDLP A+S +
Sbjct: 80 RNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNA 139
Query: 146 LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
+ L+L + + S G + ++WL++
Sbjct: 140 IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 176
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 7/167 (4%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
+E +L+LG+D AGKTTLL++L S E + I PT G NI ++ KL WD+
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GG +R W Y+E +++VID+A RFE++ L ++L E L P+LI ANKQ
Sbjct: 56 GGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 115
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
DL A A E+A L+L + +RV ++ S G G+++ + W+ +
Sbjct: 116 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 162
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
E +LILG+D AGKTT+L +L+ V V +PT+G N+ + N K WDLG
Sbjct: 7 EXRILILGLDGAGKTTILYRLQ-VGEVVT------TIPTIGFNVETVTYKNLKFQVWDLG 59
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
G +R W YY AV++V+D+ R SK+ L L E+L+ A L++ ANKQD
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQD 119
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
A ++ E A L L L +R S G G+ E+ EWLVE ++
Sbjct: 120 XEQAXTSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLK 168
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
+KT+ V++ G+D +GKTT++ ++K S+ + I TVG N+ E +
Sbjct: 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-----HITATVGYNVETFEKGRVAFTVF 68
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ-------GA 126
D+GG R +WE YY+ AV+FV+D++ R K+ ++ +L++ED++
Sbjct: 69 DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRV 128
Query: 127 PLLILANKQDLPDAVSADELARYLDLKKL--DERVCMFEAVSGYDGFGIKESVEWLVEVM 184
P L ANK D A +A EL LDL L D +F A +G G G+ E WL E
Sbjct: 129 PFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF-ASNGLKGTGVHEGFSWLQETA 187
Query: 185 ER 186
R
Sbjct: 188 SR 189
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+ VL+LG+D AGKT++L +L VPTVG+N+ ++ N WDLG
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLG-------DVVTTVPTVGVNLETLQYKNISFEVWDLG 74
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ G+R W Y+ + AV++V+D+ R +K L +L ++L+ + LLI ANKQD
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE 182
LPDA S E+A L + + R S G G+ E ++WLVE
Sbjct: 135 LPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVE 180
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 13/136 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLG 76
+L LG+D AGKTTLL LK+ DR+ PT + + N K +DLG
Sbjct: 4 LLFLGLDNAGKTTLLHMLKN----------DRLATLQPTWHPTSEELAIGNIKFTTFDLG 53
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
G R +W+ Y+ E + +VF++DAA P RF++++ L+ + +L+ P +IL NK D
Sbjct: 54 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 113
Query: 137 LPDAVSADELARYLDL 152
P+AVS EL L L
Sbjct: 114 APNAVSEAELRSALGL 129
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 13/136 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLG 76
+L LG+D AGKTTLL LK+ DR+ PT + + N K +DLG
Sbjct: 26 LLFLGLDNAGKTTLLHMLKN----------DRLATLQPTWHPTSEELAIGNIKFTTFDLG 75
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
G R +W+ Y+ E + +VF++DAA P RF++++ L+ + +L+ P +IL NK D
Sbjct: 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135
Query: 137 LPDAVSADELARYLDL 152
P+AVS EL L L
Sbjct: 136 APNAVSEAELRSALGL 151
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
F GL+K ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 28 FLGLYK-----KSGKLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 72
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
+ ++ +DLGG R +W+ Y + +VF++D A SR +SK L ++ +E
Sbjct: 73 ELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDE 132
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDL 152
+ P+LIL NK D DA+S ++L L
Sbjct: 133 TISNVPILILGNKIDRTDAISEEKLREIFGL 163
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
F GL+K KT ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 15 FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 59
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
+ ++ +DLGG R +W+ Y + +VF++D A R +SK L+ ++ +E
Sbjct: 60 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 119
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDL 152
+ P+LIL NK D P+A+S + L L
Sbjct: 120 TIANVPILILGNKIDRPEAISEERLREMFGL 150
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
F GL+K KT ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 18 FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 62
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
+ ++ +DLGG R +W+ Y + +VF++D A R +SK L+ ++ +E
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 122
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDL 152
+ P+LIL NK D P+A+S + L L
Sbjct: 123 TIANVPILILGNKIDRPEAISEERLREMFGL 153
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
F GL+K KT ++ LG+D AGKTTLL LK DR+ VPT+
Sbjct: 9 FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 53
Query: 62 RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
+ ++ +DLGG R +W+ Y + +VF++D A R +SK L+ ++ +E
Sbjct: 54 ELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 113
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDL 152
+ P+LIL NK D P+A+S + L L
Sbjct: 114 TIANVPILILGNKIDRPEAISEERLREMFGL 144
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
F ++++G GKT L Y G PDR T+G++ I+ K+ W
Sbjct: 30 FKIIVIGDSNVGKTCL------TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 83
Query: 74 DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ R S+ + YY HAVVFV D + F +E+ ++ P +++
Sbjct: 84 DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVG 143
Query: 133 NKQDLPDAV 141
NK DL A+
Sbjct: 144 NKCDLRSAI 152
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
F ++++G GKT L Y G PDR T+G++ I+ K+ W
Sbjct: 21 FKIIVIGDSNVGKTCL------TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74
Query: 74 DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ R S+ + YY HAVVFV D + F +E+ ++ P +++
Sbjct: 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 133 NKQDLPDAVS 142
NK DL A+
Sbjct: 135 NKCDLRSAIQ 144
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + D + T+G++ I I + N KL W
Sbjct: 10 FKLLLIGDSGVGKSCLLLRF------ADDTYTDSYISTIGVDFKIRTISLENKTVKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F++ K ++++ R ++ L++ N
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVNKLLVGN 122
Query: 134 KQDL--PDAVSADE 145
K DL V++DE
Sbjct: 123 KCDLVSKRVVTSDE 136
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 15/183 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
F +LI+G GK++LL + + + T+G++ I +E++ K L W
Sbjct: 10 FKLLIIGDSGVGKSSLLLRF------ADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY H V+ V D F + K L ++ N++ +++ N
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGN 121
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEML 193
K D P+ + Y ++ + +FE S + ++E + E++ R+K+ +
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMG--IQLFET-SAKENVNVEEMFNCITELVLRAKKDNLA 178
Query: 194 RAR 196
+ +
Sbjct: 179 KQQ 181
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNS 68
F F V+++G GKT LL + K + TVG++ ++
Sbjct: 6 FYDVAFKVMLVGDSGVGKTCLLVRFKD-----GAFLAGTFISTVGIDFRNKVLDVDGVKV 60
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
KL WD GQ RS+ YY +AHA++ + D + F++ + L ++ L
Sbjct: 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVAL 119
Query: 129 LILANKQD 136
++L NK D
Sbjct: 120 MLLGNKVD 127
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
F +LI+G GKT+ L + Y++ P V TVG++ + + KL W
Sbjct: 6 FKILIIGNSSVGKTSFLFR----YADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + + D F ++ ++ A +L++ N
Sbjct: 60 DTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 134 KQDLPD--AVSAD---ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
K D+ D VS++ +LA +L + FEA S D +K++ E LV+V+
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFE-------FFEA-SAKDNINVKQTFERLVDVI 166
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
F ++++G GKT L+ + +GL P T+G++ I +E++ K L W
Sbjct: 27 FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
D GQ RSI + YY A+A++ D C F
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESF 114
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 7 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++ N
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 119
Query: 134 KQDLP-----DAVSADELARYL 150
K DL D +A E A L
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSL 141
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 7 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++ N
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 119
Query: 134 KQDLP-----DAVSADELARYL 150
K DL D +A E A L
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSL 141
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 26 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++ N
Sbjct: 80 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 138
Query: 134 KQDLP-----DAVSADELARYLDL 152
K DL D +A E A L +
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGI 162
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 34 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++ N
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 146
Query: 134 KQDLP-----DAVSADELARYLDL 152
K DL D +A E A L +
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGI 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 18 FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GK+ LL + Y+N + + D + TV L+ + KL WD
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 76
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
GQ R+I YY +H ++ V D F K L+++ R LL+ NK
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNK 135
Query: 135 QDLPD--AVSADELARYLDLKKL 155
DL D V D + D K+
Sbjct: 136 CDLKDKRVVEYDVAKEFADANKM 158
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 18 FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GK+ LL + Y+N + + D + TV L+ + KL WD
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 63
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
GQ R+I YY +H ++ V D F K L+++ R LL+ NK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNK 122
Query: 135 QDLPD--AVSADELARYLDLKKL 155
DL D V D + D K+
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKM 145
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 18 FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GK+ LL + Y+N + + D + TV L+ + KL WD
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 63
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
GQ R+I YY +H ++ V D F K L+++ R LL+ NK
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNK 122
Query: 135 QDLPD--AVSADELARYLDLKKL 155
DL D V D + D K+
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKM 145
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK LL + + + + T+G++ I IE+ KL W
Sbjct: 17 FKLLLIGDSGVGKNCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++ N
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 129
Query: 134 KQDLP-----DAVSADELARYL 150
K DL D +A E A L
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSL 151
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 17 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++ N
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 129
Query: 134 KQDLP-----DAVSADELARYLDL 152
K DL D +A E A L +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 10 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D + + K L+++ R + L++ N
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS-ENVNKLLVGN 122
Query: 134 KQDLP-----DAVSADELARYL 150
K DL D +A E A L
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSL 144
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 10 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D + + K L+++ R + L++ N
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS-ENVNKLLVGN 122
Query: 134 KQDLP-----DAVSADELARYL 150
K DL D +A E A L
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSL 144
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 6 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTIRLQL 59
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ RS+ Y ++ A V V D + F+ + ++ V R E ++++
Sbjct: 60 WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVG 118
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
NK DL D VS +E R K E MF S G+ +K+
Sbjct: 119 NKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 158
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
+L++G GK+ LL + + + + T+G++ I IE+ KL WD
Sbjct: 2 LLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 55
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R+I YY AH ++ V D F + K L+++ R + L++ NK
Sbjct: 56 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKC 114
Query: 136 DLP-----DAVSADELARYL 150
DL D +A E A L
Sbjct: 115 DLTTKKVVDYTTAKEFADSL 134
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 18/165 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 1 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 54
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ RS+ Y ++ V V D + F+ + ++ V R E ++++
Sbjct: 55 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVG 113
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
NK DL D VS +E R K E MF S G+ +K+
Sbjct: 114 NKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 153
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 14 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 67
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ RS+ Y ++ V V D + F + ++ V R E ++++
Sbjct: 68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIMLVG 126
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
NK DL D VS +E R K E MF S G+ +K+
Sbjct: 127 NKTDLSDKRQVSTEEGER-----KAKELNVMFIETSAKAGYNVKQ 166
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLV---F 72
F ++++G GK+ LL + N+E T+G+ I++ N+K++
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLES------KSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ R+I YY A + V D + FE+ + L+++ N D +L++
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNAD-SNIVILLVG 120
Query: 133 NKQDLPD--AVSADELARYLDLKKL 155
NK DL ++ ++ +Y +KL
Sbjct: 121 NKSDLKHLRVINDNDATQYAKKEKL 145
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
+L++G GK+ LL + + + + T+G++ I IE+ KL WD
Sbjct: 1 LLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 54
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R+I YY AH ++ V D F + K L+++ R + L++ NK
Sbjct: 55 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKC 113
Query: 136 DLP 138
DL
Sbjct: 114 DLT 116
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNSKL--VFW 73
F ++++G GK+ LL + + N+E T+G+ IEV N K+ W
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKS------TIGVEFATRTIEVENKKIKAQIW 64
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + V D + S +E+ L ++ N D A LI N
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI-GN 123
Query: 134 KQDLPD--AVSADELARY 149
K DL AV DE +
Sbjct: 124 KSDLAHLRAVPTDEAKNF 141
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 23/168 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F ++++G GKT ++++ K+ G +R T+G++ I+ KL W
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I + YY A+ + D S F +E V + LLI N
Sbjct: 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI-GN 142
Query: 134 KQDLPD-----AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 176
K DL + A LA + D+ +C E S D ++E+
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDI------LCAIE-TSAKDSSNVEEA 183
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
F +L++G GK+ LL + + + + T+G++ I IE+ KL W
Sbjct: 9 FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY AH ++ V D F + K L+++ R + L++
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGI 121
Query: 134 KQDLP-----DAVSADELARYL 150
K DL D +A E A L
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSL 143
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 26/183 (14%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---------SNSK- 69
+L LG GKTT L + Y++ + P + + TVG++ V S+ K
Sbjct: 28 LLALGDSGVGKTTFLYR----YTDNKFNP--KFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 70 ----LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
L WD GQ RS+ ++ +A + + D F + + + ++ N +
Sbjct: 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
Query: 126 APLLILANKQDLPDAVSADE-LARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVE-V 183
++++ NK DLPD +E AR L D+ + S G ++++VE L++ +
Sbjct: 142 PDIVLIGNKADLPDQREVNERQAREL----ADKYGIPYFETSAATGQNVEKAVETLLDLI 197
Query: 184 MER 186
M+R
Sbjct: 198 MKR 200
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
+L++G GK+ LL + VE + T+G++ I ++++ K L WD
Sbjct: 23 ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R+I YY A ++ V D F + K + V + + + A LL++ NK
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE-AQLLLVGNKS 135
Query: 136 DLPD-AVSADE 145
D+ V+AD+
Sbjct: 136 DMETRVVTADQ 146
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 20/193 (10%)
Query: 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---- 62
G K ++ + +++ G GK++ L +L + + I T+G++
Sbjct: 18 GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRL------CKNEFRENISATLGVDFQMKTLI 71
Query: 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
++ + L WD GQ RSI + Y+ +A V+ + D C F + + ++ ++ +
Sbjct: 72 VDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD-MIEDAA 130
Query: 123 LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM-----FEAVSGYDGFGIKESV 177
+ P++++ NK D+ D + + + E++ M F S DG I E+V
Sbjct: 131 HETVPIMLVGNKADIRDTAATE--GQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAV 188
Query: 178 EWLVEVMERSKRT 190
L E KRT
Sbjct: 189 LHLAR--EVKKRT 199
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 22/167 (13%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 2 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ RS+ Y ++ V V D + F+ + ++ V R E ++++
Sbjct: 56 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVIIMLVG 114
Query: 133 NKQDLPDAVSADELARYLDLKKLDERV----CMFEAVSGYDGFGIKE 175
NK DL D R + +++ ++R MF S G+ +K+
Sbjct: 115 NKTDLAD-------KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQ 154
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 25/195 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
F +LI+G GKT+ L + Y++ P V TVG++ + + KL W
Sbjct: 9 FKILIIGNSSVGKTSFLFR----YADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + D F ++ ++ A +L++ N
Sbjct: 63 DTAGLERYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 134 KQDLPD--AVSAD---ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188
K D D VS++ +LA +L + FEA S D +K++ E LV+V+ K
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFE-------FFEA-SAKDNINVKQTFERLVDVI-CEK 172
Query: 189 RTEMLRARAGASTGS 203
+E L A TG+
Sbjct: 173 XSESLDTADPAVTGA 187
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
F +L++G GKT+ L + Y++ P V TVG++ V KL W
Sbjct: 23 FKLLLIGNSSVGKTSFLFR----YADDSFTPA--FVSTVGIDFKVKTVYRHDKRIKLQIW 76
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + + D A F + ++ + A ++++ N
Sbjct: 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQVILVGN 135
Query: 134 KQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
K DL D V A++ R D D FEA S + +K+ E LV+V+
Sbjct: 136 KCDLEDERVVPAEDGRRLAD----DLGFEFFEA-SAKENINVKQVFERLVDVI 183
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVF 72
TE+ ++++G D GK+ L +L ++ D PT+ + + I+ L
Sbjct: 3 TEYKLVVVGADGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 56
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ ++ ++Y + V FED E++ R +D + P++++
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 133 NKQDLP----DAVSADELAR 148
NK DLP D A +LAR
Sbjct: 117 NKSDLPSRTVDTKQAQDLAR 136
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
+L++G GK+ LL + VE + T+G++ I ++++ K L WD
Sbjct: 10 ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R+I YY A ++ V D F + K + V + + + A LL++ NK
Sbjct: 64 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE-AQLLLVGNKS 122
Query: 136 DLPD-AVSADE 145
D+ V+AD+
Sbjct: 123 DMETRVVTADQ 133
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSN---VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GKT +L + N + + D + T+ L+ RI KL WD
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-----KLQIWD 63
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL--LILA 132
GQ R+I YY A ++ V D F++ + + + E+ A + +IL
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI---EEHASADVEKMILG 120
Query: 133 NKQDLPD 139
NK D+ D
Sbjct: 121 NKCDVND 127
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSN---VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
F +L++G GKT +L + N + + D + T+ L+ RI KL WD
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-----KLQIWD 61
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL--LILA 132
GQ R+I YY A ++ V D F++ + + + E+ A + +IL
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI---EEHASADVEKMILG 118
Query: 133 NKQDLPD 139
NK D+ D
Sbjct: 119 NKCDVND 125
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
+L++G GK+ LL + VE + T+G++ I ++++ K L WD
Sbjct: 6 ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDT 59
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R+I YY A ++ V D F + K + V + + + A LL++ NK
Sbjct: 60 AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE-AQLLLVGNKS 118
Query: 136 DLPD-AVSADE 145
D+ V+AD+
Sbjct: 119 DMETRVVTADQ 129
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----SK 69
K V+ILG GKT+L+ + V + T+G + EV+ +
Sbjct: 6 KNILKVIILGDSGVGKTSLMHRY------VNDKYSQQYKATIGADFLTKEVTVDGDKVAT 59
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA--- 126
+ WD GQ +S+ +Y A V V D S FE+ K+ ++ L + ++
Sbjct: 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 127 PLLILANKQDLPDA------VSADELARYL 150
P +IL NK D ++ SA ELA+ L
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSL 149
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFW 73
E+ +++LG GK+ L + V+G+ D PT+ + + ++ L
Sbjct: 3 EYKLVVLGSGGVGKSALTVQF------VQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEIL 56
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G ++ + Y + V S F D + E++LR +D + P++++ N
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 134 KQDLPD 139
K DL D
Sbjct: 117 KCDLED 122
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVF 72
TE+ ++++G D GK+ L +L ++ D PT+ + + I+ L
Sbjct: 3 TEYKLVVVGADGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 56
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ ++ ++Y + V FED E++ R +D + P++++
Sbjct: 57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 133 NKQDLP----DAVSADELAR 148
NK DLP D A +LAR
Sbjct: 117 NKCDLPSRTVDTKQAQDLAR 136
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVF 72
+ V+I+G GKT+L+E+ + + TVG++ I +E+ K L
Sbjct: 26 KLQVIIIGSRGVGKTSLMERF------TDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ SI YY A ++ V D F+D + K++ + A LL++
Sbjct: 80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM-KMIDKYASEDAELLLVG 138
Query: 133 NKQD 136
NK D
Sbjct: 139 NKLD 142
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + + T+G++ +E +L
Sbjct: 13 KFKLVFLGEQSVGKTSLITRF--MYDSFD----NTYQATIGIDFLSKTMYLEDRTIRLQL 66
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD G RS+ Y ++ A V V D + F+ + ++ V R E ++++
Sbjct: 67 WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVG 125
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
NK DL D VS +E R K E MF S G+ +K+
Sbjct: 126 NKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 165
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 20/165 (12%)
Query: 17 EFHVLILGIDKAGKTTLLEKLK-----SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
++ ++ LG GKT+++ + + Y + G+ D + T+ L+ G + +L
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGI--DFLSKTLYLDEGPV-----RLQ 53
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD GQ RS+ Y ++ A + V D FE++ ++ +L NE + + ++
Sbjct: 54 LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVIIALV 112
Query: 132 ANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIK 174
NK DL D V+ +E +K E F S G IK
Sbjct: 113 GNKTDLGDLRKVTYEE-----GXQKAQEYNTXFHETSAKAGHNIK 152
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
+L++G GK+ LL + VE + T+G++ I ++++ K L WD
Sbjct: 6 ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 59
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R+I YY A ++ V D F + K + V + + + A LL++ NK
Sbjct: 60 AGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDE-AQLLLVGNKS 118
Query: 136 DLPD-AVSADE 145
D V+AD+
Sbjct: 119 DXETRVVTADQ 129
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-------LNIGRIEVSNSKL 70
F V++LG GKT+L V E D+ + T+G LNIG V+ L
Sbjct: 7 FKVVLLGEGCVGKTSL------VLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN---L 57
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALEKVLRNEDLQGAP 127
WD GQ ++ YY +++ + V D F+ K L K+L NE
Sbjct: 58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----IC 113
Query: 128 LLILANKQDLPD--AVSADELARY 149
L I+ NK DL VS E Y
Sbjct: 114 LCIVGNKIDLEKERHVSIQEAESY 137
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + T+G++ +E +L
Sbjct: 6 KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 59
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD G RS+ Y ++ V V D + F+ + ++ V R E ++++
Sbjct: 60 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVG 118
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
NK DL D VS +E R K E MF S G+ +K+
Sbjct: 119 NKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 158
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 23/190 (12%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
F L++G GK+ LL + +E D T+G+ G I V KL W
Sbjct: 11 FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL---QGAPLLI 130
D GQ RS+ YY A + V D SR ++ AL L + + Q +++
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYD--ITSR--ETYNALTNWLTDARMLASQNIVIIL 120
Query: 131 LANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKES-VEWLVEVMERSK 188
NK+DL AD +L+ + E MF S G ++E+ V+ +++ + +
Sbjct: 121 CGNKKDLD----ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176
Query: 189 RTEMLRARAG 198
E+ R G
Sbjct: 177 SGELDPERMG 186
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG K GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESKVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
K DL + AV E Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFW 73
E+ +++LG GK+ L + V+G+ ++ PT+ + + ++ L
Sbjct: 3 EYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEIL 56
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G ++ + Y + V S F D + E++LR +D + P++++ N
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 134 KQDLPD 139
K DL D
Sbjct: 117 KCDLED 122
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 18/173 (10%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F ++++G GK+ LL + N++ T+G+ IE K W
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDS------KSTIGVEFATRTLEIEGKRIKAQIW 67
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + V D + S +E+ L ++ N D A LI N
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI-GN 126
Query: 134 KQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
K DL AV +E + +L +F S + + ++ E L+ +
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQL-----LFTETSALNSENVDKAFEELINTI 174
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS------------- 66
+L LG GKTT L + Y++ + P + + TVG++ V
Sbjct: 14 LLALGDSGVGKTTFLYR----YTDNKFNP--KFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
L WD G RS+ ++ +A + + D F + + + ++ N +
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVE- 182
++++ NK DLPD +E ++L E+ + FE S G +++SVE L++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQ----ARELAEKYGIPYFE-TSAATGQNVEKSVETLLDL 182
Query: 183 VMERSKR 189
+M+R ++
Sbjct: 183 IMKRMEK 189
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 19/128 (14%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--------RIEVSNSK 69
F +I+G GK+ LL + R P L IG I+ K
Sbjct: 11 FKYIIIGDTGVGKSCLLLQF----------TDKRFQPVHDLTIGVEFGARMITIDGKQIK 60
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L WD GQ RSI YY A + V D F T LE R ++
Sbjct: 61 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDA-RQHSNSNMVIM 119
Query: 130 ILANKQDL 137
++ NK DL
Sbjct: 120 LIGNKSDL 127
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
+L++G GK+ LL + VE + T+G++ I ++++ K L WD
Sbjct: 6 ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDT 59
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ R+I YY A ++ V D F + K + V + + + A LL++ NK
Sbjct: 60 AGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDE-AQLLLVGNKS 118
Query: 136 DLPD-AVSADE 145
D V+AD+
Sbjct: 119 DXETRVVTADQ 129
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV- 71
K V+ILG GKT+L+ + + +SN + T+G + EV + +LV
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVT 58
Query: 72 --FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGA 126
WD GQ +S+ +Y A V V D P+ F+ + ++ L D +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 127 PLLILANKQDLPDAVSADELAR 148
P ++L NK DL + A + A+
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQ 140
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 20 VLILGIDKAGKTTLLEKL-KSVYSNVE-GLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
VL +G+ +GKT L +L Y + + + + V N G + L DL G
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRG------NSLTLIDLPG 63
Query: 78 QPGLR-SIWEKYYEEAHAVVFVIDAACPSR-FEDSKTALEKVLRNE-DLQGAP-LLILAN 133
LR + +++ A AVVFV+D+A R +D L +VL + L+ +P LLI N
Sbjct: 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
KQD+ A SA + + L+ + RV A S D
Sbjct: 124 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
K WD GQ S+ YY A A + V D + FE +K ++++ QG P
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL----QAQGNPN 117
Query: 129 LILA---NKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEV 183
+++A NK DL DA V+A++ Y E F S +KE +
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTY-----AQENGLFFMETSAKTATNVKEIFYEIARR 172
Query: 184 MERSKRTE 191
+ R + TE
Sbjct: 173 LPRVQPTE 180
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV- 71
K V+ILG GKT+L+ + + +SN + T+G + EV + +LV
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVT 58
Query: 72 --FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL---RNEDLQGA 126
WD GQ +S+ +Y A V V D P+ F+ + ++ L D +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 127 PLLILANKQDLPDAVSADELAR 148
P ++L NK DL + A + A+
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQ 140
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 19/128 (14%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--------RIEVSNSK 69
F +I+G GK+ LL + R P L IG I+ K
Sbjct: 22 FKYIIIGDTGVGKSCLLLQF----------TDKRFQPVHDLTIGVEFGARMVNIDGKQIK 71
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L WD GQ RSI YY A + V D F + LE R ++
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIM 130
Query: 130 ILANKQDL 137
++ NK DL
Sbjct: 131 LIGNKSDL 138
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 18/165 (10%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
+F ++ LG GKT+L+ + +Y + + + T+G++ +E +L
Sbjct: 16 KFKLVFLGEQSVGKTSLITRF--MYDSFD----NTYQATIGIDFLSKTMYLEDRTVRLQL 69
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD G RS+ Y ++ V V D + F+ + ++ V R E ++++
Sbjct: 70 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVG 128
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKE 175
NK DL D VS +E R K E MF S G+ +K+
Sbjct: 129 NKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 168
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG + GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESRVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
K DL + AV E Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 28/187 (14%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---------SNSK- 69
+L LG GKTT L + Y++ + P + + TVG++ V ++ K
Sbjct: 14 LLALGDSGVGKTTFLYR----YTDNKFNP--KFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 70 ----LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
L WD G RS+ ++ +A + + D F + + + ++ N +
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVE- 182
++++ NK DLPD +E ++L E+ + FE S G +++SVE L++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQ----ARELAEKYGIPYFE-TSAATGQNVEKSVETLLDL 182
Query: 183 VMERSKR 189
+M+R ++
Sbjct: 183 IMKRMEK 189
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 22/167 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
F L++G GK+ LL + +E D T+G+ G I V KL W
Sbjct: 12 FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL---QGAPLLI 130
D GQ RS+ YY A + V D SR ++ AL L + + Q +++
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYD--ITSR--ETYNALTNWLTDARMLASQNIVIIL 121
Query: 131 LANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKES 176
NK+DL AD +L+ + E MF S G ++E+
Sbjct: 122 CGNKKDLD----ADREVTFLEASRFAQENELMFLETSALTGEDVEEA 164
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + V D A +E+ + L K LR+ ++++ N
Sbjct: 84 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGN 142
Query: 134 KQDLPD--AVSADE 145
K DL AV DE
Sbjct: 143 KSDLRHLRAVPTDE 156
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFW 73
E+ +++LG GK+ L + V+G+ ++ PT+ + + ++ L
Sbjct: 3 EYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEIL 56
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G ++ + Y + V S F D + E++LR +D P++++ N
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 116
Query: 134 KQDLPD 139
K DL D
Sbjct: 117 KCDLED 122
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 74
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + V D A +E+ + L K LR+ ++++ N
Sbjct: 75 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGN 133
Query: 134 KQDLPD--AVSADE 145
K DL AV DE
Sbjct: 134 KSDLRHLRAVPTDE 147
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 18/187 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS------TIGVEFATRSIQVDGKTIKAQIW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R I YY A + V D A +E+ + L K LR+ ++++ N
Sbjct: 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGN 118
Query: 134 KQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTE 191
K DL AV DE + + L F S D ++E+ + ++ + R +
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNLS-----FIETSALDSTNVEEAFKNILTEIYRIVSQK 173
Query: 192 MLRARAG 198
+ RA
Sbjct: 174 QIADRAA 180
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG + GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESEVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
K DL + AV E Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 15 KTEFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV- 71
K V+ILG GKT+L+ + + +SN + T+G + EV + +LV
Sbjct: 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVT 58
Query: 72 --FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL---RNEDLQGA 126
WD GQ +S+ +Y A V V D P+ F+ + ++ L D +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 127 PLLILANKQDLPDAVSADELAR 148
P ++L NK D + A + A+
Sbjct: 119 PFVVLGNKIDFENRQVATKRAQ 140
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 7 QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 65 GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 120
Query: 134 KQDLPD--AVSADELARYLDLKKL 155
K DL + AV E Y D L
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSL 144
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFW 73
E+ +++LG GK+ L + V+G+ ++ PT+ + + ++ L
Sbjct: 5 EYKLVVLGSVGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEIL 58
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G ++ + Y + V S F D + E++LR +D P++++ N
Sbjct: 59 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 118
Query: 134 KQDLPD 139
K DL D
Sbjct: 119 KCDLED 124
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNS--KLVFWDL 75
++++G GK++++++ +G+ T+G++ +I+V++ +L+ WD
Sbjct: 8 MVVVGNGAVGKSSMIQRY------CKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ +I + YY A A V V FE + EKV+ ++ P ++ NK
Sbjct: 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV--AEVGDIPTALVQNKI 119
Query: 136 DLPDAVS-----ADELARYLDLK 153
DL D A+ LA+ L L+
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLR 142
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 7 QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 65 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 120
Query: 134 KQDLPD--AVSADELARYLD 151
K DL + AV E Y D
Sbjct: 121 KADLANKRAVDFQEAQSYAD 140
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS------------- 66
+L LG GKTT L + Y++ + P + + TVG++ V
Sbjct: 14 LLALGDSGVGKTTFLYR----YTDNKFNP--KFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
L WD G RS+ ++ +A + D F + + ++ N +
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVEV 183
++++ NK DLPD +E ++L E+ + FE S G +++SVE L+++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQ----ARELAEKYGIPYFE-TSAATGQNVEKSVETLLDL 182
Query: 184 MER 186
+ +
Sbjct: 183 IXK 185
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 18 FHVLILGIDKAGKTTL-LEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
F V++LG GKT+L L ++ +++ T LNIG V+ L WD
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVN---LAIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALEKVLRNEDLQGAPLLILAN 133
GQ ++ YY +++ + V D F+ K L K+L NE L I+ N
Sbjct: 64 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGN 119
Query: 134 KQDLPD--AVSADELARY 149
K DL VS E Y
Sbjct: 120 KIDLEKERHVSIQEAESY 137
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
K DL + AV E Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 18 FHVLILGIDKAGKTTL-LEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
F V++LG GKT+L L ++ +++ T LNIG V+ L WD
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVN---LAIWDTA 77
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALEKVLRNEDLQGAPLLILAN 133
GQ ++ YY +++ + V D F+ K L K+L NE L I+ N
Sbjct: 78 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGN 133
Query: 134 KQDLPD--AVSADELARY 149
K DL VS E Y
Sbjct: 134 KIDLEKERHVSIQEAESY 151
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVF 72
+F +++LG GK++L+ + V+G + T+G V + K
Sbjct: 8 QFKLVLLGESAVGKSSLVLRF------VKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ S+ YY A A + V D F +KT ++++ R Q +P +++A
Sbjct: 62 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR----QASPSIVIA 117
Query: 133 ---NKQDLPDA--VSADELARYLD 151
NK DL + V +E Y D
Sbjct: 118 LAGNKADLANKRMVEYEEAQAYAD 141
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESPVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
K DL + AV E Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS------------- 66
+L LG GKTT L + Y++ + P + + TVG++ V
Sbjct: 14 LLALGDSGVGKTTFLYR----YTDNKFNP--KFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
L WD G RS+ ++ +A + D F + + ++ N +
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVEV 183
++++ NK DLPD +E ++L E+ + FE S G +++SVE L+++
Sbjct: 128 PDIVLIGNKADLPDQREVNERQ----ARELAEKYGIPYFE-TSAATGQNVEKSVETLLDL 182
Query: 184 MER 186
+ +
Sbjct: 183 IXK 185
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVF 72
E V +LG GK+++ V+ VE I PT+G + ++ N K +
Sbjct: 5 ELKVCLLGDTGVGKSSI------VWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 58
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ R++ YY + A + V D E++ + L+ +R G P +++A
Sbjct: 59 WDTAGQERFRALAPMYYRGSAAAIIVYDITK----EETFSTLKNWVRELRQHGPPSIVVA 114
Query: 133 ---NKQDLPD 139
NK DL D
Sbjct: 115 IAGNKCDLTD 124
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 5 QFKLVLLGESAVGKSSLV--LRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 63 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPNIVIALAGN 118
Query: 134 KQDLPD--AVSADELARYLD 151
K DL AV E Y D
Sbjct: 119 KADLASKRAVEFQEAQAYAD 138
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 6 QFKLVLLGESLVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
K DL + AV E Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
F +LI+G GKT+ L + Y++ P V TVG++ V KL W
Sbjct: 24 FKLLIIGNSSVGKTSFLFR----YADDTFTPA--FVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ R+I YY A + + D F + ++ + A ++++ N
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI-KTYSWDNAQVILVGN 136
Query: 134 KQDLPD 139
K D+ +
Sbjct: 137 KCDMEE 142
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 3 QFKLVLLGESAVGKSSLV--LRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
GQ S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPNIVIALAGN 116
Query: 134 KQDLPD--AVSADELARYLD 151
K DL AV E Y D
Sbjct: 117 KADLASKRAVEFQEAQAYAD 136
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLV 71
T +LI+G GK++LL + + P+ + T+G++ ++ + +KL
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTD-----DTFDPE-LAATIGVDFKVKTISVDGNKAKLA 67
Query: 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
WD GQ R++ YY A V+ V D F
Sbjct: 68 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 103
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + VPT+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
F L++G GK+ LL + +E D T+G+ G I V KL W
Sbjct: 9 FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL---QGAPLLI 130
D G RS+ YY A + V D SR ++ AL L + + Q +++
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYD--ITSR--ETYNALTNWLTDARMLASQNIVIIL 118
Query: 131 LANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDGFGIKES 176
NK+DL AD +L+ + E MF S G ++E+
Sbjct: 119 CGNKKDLD----ADREVTFLEASRFAQENELMFLETSALTGEDVEEA 161
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + V D A +E+ + L K LR+ ++++ N
Sbjct: 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGN 142
Query: 134 KQDLPD--AVSADE 145
K DL AV DE
Sbjct: 143 KSDLRHLRAVPTDE 156
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 28/187 (14%)
Query: 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--------------S 66
L LG GKT++L Y +G + + TVG++ V
Sbjct: 15 LALGDSGVGKTSVL------YQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
L WD G RS+ ++ +A + + D F + + + ++ + +
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 127 PLLILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDGFGIKESVEWLVE-V 183
+++ NK DL D + E + ++L E+ + FE S +G I ++E L++ +
Sbjct: 129 DIVLCGNKSDLEDQRAVKE----EEARELAEKYGIPYFE-TSAANGTNISHAIEMLLDLI 183
Query: 184 MERSKRT 190
M+R +R+
Sbjct: 184 MKRMERS 190
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + V D A +E+ + L K LR+ ++++ N
Sbjct: 63 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGN 121
Query: 134 KQDLPD--AVSADE 145
K DL AV DE
Sbjct: 122 KSDLRHLRAVPTDE 135
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVF 72
TE+ ++++G D GK+ L +L ++ D PT+ + + I+ L
Sbjct: 2 TEYKLVVVGADGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ ++ ++Y + V FED E++ R +D P++++
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 133 NKQDLP----DAVSADELAR 148
NK DL ++ A +LAR
Sbjct: 116 NKCDLAARTVESRQAQDLAR 135
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 20 VLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDL 75
++++G + GKT +L+ L K Y P+ VPTV N E +L WD
Sbjct: 14 LVLVGDVQCGKTAMLQVLAKDCY-------PETYVPTVFENYTACLETEEQRVELSLWDT 66
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP---LLILA 132
G P ++ Y ++ AV+ D SR E +AL+K R E L P +L++
Sbjct: 67 SGSPYYDNVRPLCYSDSDAVLLCFDI---SRPETVDSALKK-WRTEILDYCPSTRVLLIG 122
Query: 133 NKQDL 137
K DL
Sbjct: 123 CKTDL 127
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 20 VLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDL 75
++++G + GKT +L+ L K Y P+ VPTV N E +L WD
Sbjct: 13 LVLVGDVQCGKTAMLQVLAKDCY-------PETYVPTVFENYTACLETEEQRVELSLWDT 65
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP---LLILA 132
G P ++ Y ++ AV+ D SR E +AL+K R E L P +L++
Sbjct: 66 SGSPYYDNVRPLCYSDSDAVLLCFDI---SRPETVDSALKK-WRTEILDYCPSTRVLLIG 121
Query: 133 NKQDL 137
K DL
Sbjct: 122 CKTDL 126
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 20 VLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDL 75
++++G + GKT +L+ L K Y P+ VPTV N E +L WD
Sbjct: 30 LVLVGDVQCGKTAMLQVLAKDCY-------PETYVPTVFENYTACLETEEQRVELSLWDT 82
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP---LLILA 132
G P ++ Y ++ AV+ D SR E +AL+K R E L P +L++
Sbjct: 83 SGSPYYDNVRPLCYSDSDAVLLCFDI---SRPETVDSALKK-WRTEILDYCPSTRVLLIG 138
Query: 133 NKQDL 137
K DL
Sbjct: 139 CKTDL 143
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F +I+G GK+ LL + P I G I + KL WD G
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTE--KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q R++ YY A + V D S + + L RN ++++ NK DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKADL 132
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
F +I+G GK+ LL + P I G I + KL WD G
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTE--KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
Q R++ YY A + V D S + + L RN ++++ NK DL
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKADL 147
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 26 DKAGKTTLLEKLKSVYSNVEGLPPDRIVPT-----------VGLNIGRIEVSNSKLVFWD 74
+++ K L + K ++ NV+ + + VPT G++ V + D
Sbjct: 108 EESAKFQLPDCAKYLFENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFVVKDIPFHLID 167
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNEDLQ 124
+GGQ R W ++ + +FV A SR +S + + NE L+
Sbjct: 168 VGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFLK 227
Query: 125 GAPLLILANKQDL 137
GA LI NK DL
Sbjct: 228 GAVKLIFLNKXDL 240
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D + P++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DLP D A +LAR
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLAR 136
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D + P++
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DLP D A +LAR
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLAR 136
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + VPT+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNSK--LVFWDLG 76
++I+G GKT LL N +G P+ VPTV N + +EV + L WD
Sbjct: 13 LVIVGDGACGKTCLL------IVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTA 66
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
GQ + Y +++ V+ P E+ + + +VL QG P++++ K
Sbjct: 67 GQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHF--CQGVPIILVGCKV 124
Query: 136 DL 137
DL
Sbjct: 125 DL 126
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + V D A +E+ + L K LR+ + ++ N
Sbjct: 66 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIXLVGN 124
Query: 134 KQDLPD--AVSADE 145
K DL AV DE
Sbjct: 125 KSDLRHLRAVPTDE 138
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 5 QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
G S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 118
Query: 134 KQDLPD--AVSADELARYLD 151
K DL + AV E Y D
Sbjct: 119 KADLANKRAVDFQEAQSYAD 138
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
F V+++G GK+ LL + N+E T+G+ +++ K W
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 59
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G R+I YY A + V D A +E+ + L K LR+ + ++ N
Sbjct: 60 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIXLVGN 118
Query: 134 KQDLPD--AVSADE 145
K DL AV DE
Sbjct: 119 KSDLRHLRAVPTDE 132
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVF 72
E V +LG GK++++ + VE I PT+G + ++ N K +
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRF------VEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 59
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD G R++ YY + A + V D E++ + L+ +R G P +++A
Sbjct: 60 WDTAGLERFRALAPMYYRGSAAAIIVYDITK----EETFSTLKNWVRELRQHGPPSIVVA 115
Query: 133 ---NKQDLPD 139
NK DL D
Sbjct: 116 IAGNKCDLTD 125
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 38/177 (21%)
Query: 18 FHVLILGIDKAGKTTLLEKL----KSVYSNVEGLPPD-------------RIVPTVGLNI 60
++I+G GK+TLL +L +++ +++ G D RIV T G+
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR- 302
Query: 61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
S + + LG + L+ I E+A V+FV+DA+ P ED K
Sbjct: 303 -----SETNDLVERLGIERTLQEI-----EKADIVLFVLDASSPLDEEDRKIL------- 345
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESV 177
E ++ L++ NK D+ + ++ +E+ L D + A+ G ++ES+
Sbjct: 346 ERIKNKRYLVVINKVDVVEKINEEEIKNKLG---TDRHMVKISALKGEGLEKLEESI 399
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 24/168 (14%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
F L++G GK+ LL + +E T+G+ G V+ KL W
Sbjct: 26 FKFLVIGSAGTGKSCLLHQF------IENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP---LLI 130
D GQ RS+ YY A + V D ++ +L L + +P +++
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITS----RETYNSLAAWLTDARTLASPNIVVIL 135
Query: 131 LANKQDL-PD-AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKES 176
NK+DL P+ V+ E +R+ +L MF S G ++E+
Sbjct: 136 CGNKKDLDPEREVTFLEASRFAQENEL-----MFLETSALTGENVEEA 178
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 25/179 (13%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRI-----------VPTVGLNIGRIE 64
F ++ G +GKTT LK +YS V EG + + + L+IG ++
Sbjct: 14 NFKIVYYGPGLSGKTT---NLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVK 70
Query: 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE--- 121
++ + + GQ + + +VFV D+A P+R + ++ + N
Sbjct: 71 GFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEY 129
Query: 122 --DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
L P++I NK+DLPDA+ + + +D + + + EAV+ +G G+ E+++
Sbjct: 130 GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD---PEGKFPVLEAVA-TEGKGVFETLK 184
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
V+I G GK+TLL+ L + + P T G+N+G+ E + D P
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYP----FTTRGINVGQFEDGYFRYQIID---TP 222
Query: 80 GL--RSIWEKYYEEAHA----------VVFVIDAA--CPSRFEDSKTALEKVLRNEDLQG 125
GL R I E+ E A ++++ D + C E+ E+V + + +
Sbjct: 223 GLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV--HGEFKD 280
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVM 184
P L++ NK D+ D + L +++ K L+ +S G GI E +++ +
Sbjct: 281 LPFLVVINKIDVADEENIKRLEKFVKEKGLNP-----IKISALKGTGIDLVKEEIIKTL 334
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
+F +++LG GK++L+ L+ V I ++ + K WD
Sbjct: 5 QFKLVLLGESAVGKSSLV--LRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
G S+ YY A A + V D F +K ++++ R Q +P +++A N
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPNIVIALAGN 118
Query: 134 KQDLPD--AVSADELARYLD 151
K DL AV E Y D
Sbjct: 119 KADLASKRAVEFQEAQAYAD 138
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 17 EFHVLILGIDKAGKTTLL-----EKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEVSNSK 69
+ +++LG +GKT+L E Y GL RI LN+
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNV--------T 57
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF---EDSKTALEKVLRNEDLQGA 126
L WD+GGQ + +KY A V+ V D F ED T ++KV +E+ +
Sbjct: 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV--SEESETQ 115
Query: 127 PLLIL-ANKQDL 137
PL+ L NK DL
Sbjct: 116 PLVALVGNKIDL 127
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G ++ ++Y + V FED E++ R +D + P++
Sbjct: 71 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DLP D A +LAR
Sbjct: 131 LVGNKCDLPSRTVDTKQAQDLAR 153
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVF 72
TE+ ++++G GK+ L +L ++ D PT+ + + I+ L
Sbjct: 2 TEYKLVVVGARGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ ++ ++Y + V FED E++ R +D P++++
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 133 NKQDLP----DAVSADELAR 148
NK DL ++ A +LAR
Sbjct: 116 NKCDLAARTVESRQAQDLAR 135
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVF 72
TE+ ++++G GK+ L +L ++ D PT+ + + I+ L
Sbjct: 2 TEYKLVVVGAPGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ ++ ++Y + V FED E++ R +D P++++
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 133 NKQDLP----DAVSADELAR 148
NK DL ++ A +LAR
Sbjct: 116 NKCDLAGRTVESRQAQDLAR 135
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVF 72
TE+ ++++G GK+ L +L ++ D PT+ + + I+ L
Sbjct: 2 TEYKLVVVGAPGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
D GQ ++ ++Y + V FED E++ R +D P++++
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 133 NKQDLP----DAVSADELAR 148
NK DL ++ A +LAR
Sbjct: 116 NKCDLAARTVESRQAQDLAR 135
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 13 QVQFKLVLVGDGGTGKTTFVKR------HLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 124
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 125 CGNKVDIKD 133
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVF 72
E V +LG GK++++ + V+ I PT+G + + N K +
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRF------VQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76
Query: 73 WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
WD GQ S+ YY + A V V D F K + K L+ + + I
Sbjct: 77 WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWV-KELKEHGPENIVMAIAG 135
Query: 133 NKQDLPD 139
NK DL D
Sbjct: 136 NKCDLSD 142
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLG 76
++++G + GKT LL + P+ VPTV N I+ +L WD
Sbjct: 26 IVVVGDSQCGKTALLHVF------AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 79
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR------NEDLQGAPLLI 130
G P ++ Y ++ AV+ D + P L+ VL+ E +L+
Sbjct: 80 GSPYYDNVRPLSYPDSDAVLICFDISRPE-------TLDSVLKKWKGEIQEFCPNTKMLL 132
Query: 131 LANKQDLPDAVSA 143
+ K DL VS
Sbjct: 133 VGCKSDLRTDVST 145
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLG 76
++++G + GKT LL + P+ VPTV N I+ +L WD
Sbjct: 10 IVVVGDSQCGKTALLHVF------AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 63
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR------NEDLQGAPLLI 130
G P ++ Y ++ AV+ D + P L+ VL+ E +L+
Sbjct: 64 GSPYYDNVRPLSYPDSDAVLICFDISRPE-------TLDSVLKKWKGEIQEFCPNTKMLL 116
Query: 131 LANKQDLPDAVSA 143
+ K DL VS
Sbjct: 117 VGCKSDLRTDVST 129
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 1 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 54
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 55 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 112
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 113 CGNKVDIKD 121
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +++ + + N L+ +++ NKQDL
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 25/179 (13%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRI-----------VPTVGLNIGRIE 64
F ++ G +GKTT LK +YS V EG + + + L+IG ++
Sbjct: 14 NFKIVYYGPGLSGKTT---NLKWIYSKVPEGRKGEXVSLATEDERTLFFDFLPLDIGEVK 70
Query: 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE--- 121
++ + + GQ + + +VFV D+A P+R + + N
Sbjct: 71 GFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESXRNXRENLAEY 129
Query: 122 --DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVE 178
L P++I NK+DLPDA+ + + +D + + + EAV+ +G G+ E+++
Sbjct: 130 GLTLDDVPIVIQVNKRDLPDALPVEXVRAVVD---PEGKFPVLEAVA-TEGKGVFETLK 184
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVF- 72
T +++LG GK++++ L+ V ++ + PT+G R+ ++ + F
Sbjct: 2 TSIKLVLLGEAAVGKSSIV--LRFVSNDF----AENKEPTIGAAFLTQRVTINEHTVKFE 55
Query: 73 -WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
WD GQ S+ YY A A + V D P F ++ + K L + + + ++
Sbjct: 56 IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWV-KELHEQASKDIIIALV 114
Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
NK D ++AR K +E+ +F S G
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTG 153
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLG 76
++++G + GKT LL + P+ VPTV N I+ +L WD
Sbjct: 31 IVVVGDSQCGKTALLHVF------AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 84
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR------NEDLQGAPLLI 130
G P ++ Y ++ AV+ D + P L+ VL+ E +L+
Sbjct: 85 GSPYYDNVRPLSYPDSDAVLICFDISRPE-------TLDSVLKKWKGEIQEFCPNTKMLL 137
Query: 131 LANKQDLPDAVSA 143
+ K DL VS
Sbjct: 138 VGCKSDLRTDVST 150
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +++ + + N L+ +++ NKQDL
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 62 NVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +++ + + N L+ +++ NKQDL
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 13 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 124
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 125 CGNKVDIKD 133
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +++ + + N L+ +++ NKQDL
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
V T G+ + +V +D+GGQ R W + + + A++FV+ ++
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +++ + + N L+ +++ NKQDL
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + + D +++ ++R + P+++
Sbjct: 62 NVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R E+SK ++ Q + +++ NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ N +D+GGQ R W +E+ A++F + +
Sbjct: 159 VKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDE 218
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 219 TTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL 253
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R E+SK ++ Q + +++ NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R E+SK ++ Q + +++ NK+DL
Sbjct: 232 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R E+SK ++ Q + +++ NK+DL
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
VPT G+ ++ + D+GGQ R W +E +++F++ ++
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R E+SK ++ Q + +++ NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V F D E++ R +D P++
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DLP D A ELA+
Sbjct: 131 LVGNKCDLPTRTVDTKQAHELAK 153
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GGQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD GQ + + YY +A + D +++ ++R + P+++
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAAC 103
PT G++ + +D+GGQ R W + +E A++F + +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 104 PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ +I + Y+ + V F + E++LR ++ + P L++ N
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
Query: 134 KQDLPD 139
K DL D
Sbjct: 118 KSDLED 123
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSN-VEGLPP---DRIVPTVGLNIGRIEVSNSKLVFWDL 75
V+++G GK+ L L+ +Y VE P D V L+ +++ D
Sbjct: 21 VIMVGSGGVGKSALT--LQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-----ILDT 73
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ +I + Y+ + V F + E++LR ++ + P L++ NK
Sbjct: 74 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 133
Query: 136 DLPD 139
DL D
Sbjct: 134 DLED 137
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSN-VEGLPP---DRIVPTVGLNIGRIEVSNSKLVFWDL 75
V+++G GK+ L L+ +Y VE P D V L+ +++ D
Sbjct: 9 VIMVGSGGVGKSALT--LQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQID-----ILDT 61
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ +I + Y+ + V F + E++LR ++ + P L++ NK
Sbjct: 62 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 121
Query: 136 DLPD 139
DL D
Sbjct: 122 DLED 125
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV----GLNIGRIEVSNSKLVFWDL 75
V+++G GKT+LL +G P+ PTV +N+ +++ L WD
Sbjct: 37 VVLVGDGGCGKTSLLMVF------ADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDT 89
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
GQ + +Y +A ++ D P+ F++ + N + P++++ K
Sbjct: 90 AGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKT 148
Query: 136 DL 137
DL
Sbjct: 149 DL 150
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 10 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 63
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD G + + YY +A + + D +++ ++R + P+++
Sbjct: 64 NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVL 121
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 122 CGNKVDIKD 130
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 4 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 57
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD G + + YY +A + + D +++ ++R + P+++
Sbjct: 58 NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVL 115
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 116 CGNKVDIKD 124
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ +I + Y+ + V F + E++LR ++ + P L++ N
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127
Query: 134 KQDLPD 139
K DL D
Sbjct: 128 KSDLED 133
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
VPT G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK-LVFWDLGG- 77
V ++G GK+TLL + S + +VP N+G +E + + V DL G
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP----NLGXVETDDGRSFVXADLPGL 216
Query: 78 ------QPGLRSIWEKYYEEAHAVVFVIDAA---CPSRFEDSKTALEKVLR-NEDLQGAP 127
GL + ++ E +V VID + ++D T +++ N L P
Sbjct: 217 IEGAHQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTERP 276
Query: 128 LLILANKQDLPDA 140
+I+ANK D P+A
Sbjct: 277 QIIVANKXDXPEA 289
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 40/177 (22%)
Query: 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK------- 69
E V ++G AGKT+LL++L E P T GLN+ + N K
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIG-----ETFDPKE-SQTHGLNVVTKQAPNIKGLENDDE 94
Query: 70 -----LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
FWD GGQ + + + + + + ++D SR + +K LR+ +
Sbjct: 95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD----SRTDSNKHYW---LRHIEKY 147
Query: 125 G--APLLILANKQDLPDAVSADELARY-LDLKKLDERV----CMFEAVSGYDGFGIK 174
G +P++++ NK DE Y ++ KK++ER F +S +G G++
Sbjct: 148 GGKSPVIVVMNK--------IDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVE 196
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
++ S S L D G S+ + Y + + V F+D K ++++R +
Sbjct: 46 VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105
Query: 123 LQGAPLLILANKQDL 137
+ P++++ NK DL
Sbjct: 106 YEKVPVILVGNKVDL 120
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
V I+G GKT+LLE ++S + V I +G +E N + F D G
Sbjct: 7 VTIMGHVDHGKTSLLEYIRS--TKVASGEAGGITQHIGAY--HVETENGMITFLDTPGHA 62
Query: 80 GLRSIWEKYYEEAHAVVFVI---DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
S+ + + VV V+ D P E +++ P+++ NK D
Sbjct: 63 AFTSMRARGAQATDIVVLVVAADDGVMPQTIE--------AIQHAKAAQVPVVVAVNKID 114
Query: 137 LPDAVS---ADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVMERSKRTEML 193
P+A +EL++Y L + F VS G GI E L ++ +++ E+
Sbjct: 115 KPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID---ELLDAILLQAEVLELK 171
Query: 194 RARAGASTGSV 204
R G ++G+V
Sbjct: 172 AVRKGMASGAV 182
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ ++ E+Y + V + FE + +LR +D + P++++AN
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 134 KQDL 137
K DL
Sbjct: 132 KVDL 135
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKSDLAARTVESRQAQDLAR 135
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ ++ E+Y + V + FE + +LR +D + P++++AN
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 134 KQDL 137
K DL
Sbjct: 132 KVDL 135
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKSDLAARTVESRQAQDLAR 135
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ ++ E+Y + V + FE + +LR +D + P++++AN
Sbjct: 67 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 126
Query: 134 KQDL 137
K DL
Sbjct: 127 KVDL 130
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D GQ ++ E+Y + V + FE + +LR +D + P++++AN
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131
Query: 134 KQDL 137
K DL
Sbjct: 132 KVDL 135
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Query: 68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127
++L D GQ ++ E+Y H + V F + ++LR +D P
Sbjct: 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP 116
Query: 128 LLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLVEVME 185
++++ NK DL V E + + V FEA S + E+ E LV +
Sbjct: 117 VVLVGNKADLESQRQVPRSEASAF----GASHHVAYFEA-SAKLRLNVDEAFEQLVRAVR 171
Query: 186 RSKRTEM 192
+ + E+
Sbjct: 172 KYQEQEL 178
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 120 LVGNKCDLAARTVESRQAQDLAR 142
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
I+ ++L D GQ ++ E+Y + V FE+ ++LR +D
Sbjct: 48 IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 123 LQGAPLLILANKQDL 137
P++++ NK DL
Sbjct: 108 RDEFPMILIGNKADL 122
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KL 70
+ +F ++++G GKTT +++ ++ G + V T+G+ + + + K
Sbjct: 8 QVQFKLVLVGDGGTGKTTFVKR------HLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 61
Query: 71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
WD G + + YY +A + + D +++ ++R + P+++
Sbjct: 62 NVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVL 119
Query: 131 LANKQDLPD 139
NK D+ D
Sbjct: 120 CGNKVDIKD 128
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 118 LVGNKCDLAARTVESRQAQDLAR 140
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 118 LVGNKCDLAARTVESRQAQDLAR 140
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 119 LVGNKCDLAARTVESRQAQDLAR 141
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 70 LVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127
L D GQ ++ ++Y E VF I+ FED E++ R +D P
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT--KSFEDIHQYREQIKRVKDSDDVP 110
Query: 128 LLILANKQDLP----DAVSADELAR 148
++++ NK DL ++ A +LAR
Sbjct: 111 MVLVGNKCDLAARTVESRQAQDLAR 135
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 128 LLILANKQDLP---DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KE 175
L +LA + D+ DA AD L LDL E++C ++G++G G
Sbjct: 356 LTLLARQYDIGINIDAEEADRLEISLDLL---EKLCFEPELAGWNGIGFVIQAYQKRCPL 412
Query: 176 SVEWLVEVMERSKRTEMLRARAGA 199
+++L+++ RS+R M+R GA
Sbjct: 413 VIDYLIDLATRSRRRLMIRLVKGA 436
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D GQ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ N+ DL ++ A +LAR
Sbjct: 113 LVGNRCDLAARTVESRQAQDLAR 135
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
V I+G GKTTLL+KL+ + V + I +G + + S K+ F D G
Sbjct: 7 VTIMGHVDHGKTTLLDKLRK--TQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHA 63
Query: 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDS--KTALEKVLRNEDLQGAPLLILANKQDL 137
++ + + V+ V+ A +D K +E + +D P+++ NK D
Sbjct: 64 AFSAMRARGTQVTDIVILVVAA------DDGVMKQTVESIQHAKDAH-VPIVLAINKCDK 116
Query: 138 ----PDAVSADELARYLDLKKL--DERVCMFEAVSGYDGFGIKESVEWLVEVME 185
P+ V + LA + + D + A++G + + E+ L E++E
Sbjct: 117 AEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLE 170
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + + +D+GGQ R W +E A++F + +
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
+ N K WD GQ SI YY A + V D + + + +KT + ++ + +
Sbjct: 89 NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY 148
Query: 124 QGAPLLILANKQDLPDAVSAD--ELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWLV 181
++++ANK D + D E+ +Y L +F S G IK L
Sbjct: 149 ---IIILVANKID-KNKFQVDILEVQKYAQDNNL-----LFIQTSAKTGTNIKNIFYMLA 199
Query: 182 E 182
E
Sbjct: 200 E 200
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS--KLVFWDL 75
F V+++G GKT LL + ++ E R V + + + + K WD
Sbjct: 11 FKVVLIGESGVGKTNLLSR----FTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
G R+I YY A + V D + + L+++ + + +L+ NK
Sbjct: 67 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKS 125
Query: 136 DLPDA 140
DL A
Sbjct: 126 DLSQA 130
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D Q ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKXDLAARTVESRQAQDLAR 135
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS--KLVFWDL 75
F V+++G GKT LL + ++ E R V + + + + K WD
Sbjct: 26 FKVVLIGESGVGKTNLLSR----FTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
G R+I YY A + V D + + L+++ + + +L+ NK
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKS 140
Query: 136 DLPDA 140
DL A
Sbjct: 141 DLSQA 145
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
D G +I + Y+ + V F + E++LR ++ + P L++ N
Sbjct: 60 DTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 134 KQDLPD 139
K DL D
Sbjct: 120 KSDLED 125
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 147 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 206
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 207 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D Q ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKXDLAARTVESRQAQDLAR 135
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 149 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 208
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 209 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243
>pdb|1TJ2|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With Acetate
Length = 584
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 128 LLILANKQDLP---DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KE 175
L +LA + D+ DA +D L LDL E++C ++G++G G
Sbjct: 271 LTLLARQYDIGINIDAEESDRLEISLDLL---EKLCFEPELAGWNGIGFVIQAYQKRCPL 327
Query: 176 SVEWLVEVMERSKRTEMLRARAGA 199
+++L+++ RS+R M+R GA
Sbjct: 328 VIDYLIDLATRSRRRLMIRLVKGA 351
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 213 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|3E2Q|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With Trans-4-Hydroxy-L-Proline
pdb|3E2R|A Chain A, Crystal Structure Puta86-630 Mutant Y540s Complexed With
L-Tetrahydro- 2-Furoic Acid
pdb|3E2S|A Chain A, Crystal Structure Reduced Puta86-630 Mutant Y540s
Complexed With L- Proline
Length = 551
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 128 LLILANKQDLP---DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KE 175
L +LA + D+ DA +D L LDL E++C ++G++G G
Sbjct: 271 LTLLARQYDIGINIDAEESDRLEISLDLL---EKLCFEPELAGWNGIGFVIQAYQKRCPL 327
Query: 176 SVEWLVEVMERSKRTEMLRARAGA 199
+++L+++ RS+R M+R GA
Sbjct: 328 VIDYLIDLATRSRRRLMIRLVKGA 351
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 212
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 213 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 152 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 211
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 212 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 128 LLILANKQDLP---DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KE 175
L +LA + D+ DA +D L LDL E++C ++G++G G
Sbjct: 271 LTLLARQYDIGINIDAEESDRLEISLDLL---EKLCFEPELAGWNGIGFVIQAYQKRCPL 327
Query: 176 SVEWLVEVMERSKRTEMLRARAGA 199
+++L+++ RS+R M+R GA
Sbjct: 328 VIDYLIDLATRSRRRLMIRLVKGA 351
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G+ ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 154 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 213
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 214 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 128 LLILANKQDLP---DAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI---------KE 175
L +LA + D+ DA +D L LDL E++C ++G++G G
Sbjct: 271 LTLLARQYDIGINIDAEESDRLEISLDLL---EKLCFEPELAGWNGIGFVIQAYQKRCPL 327
Query: 176 SVEWLVEVMERSKRTEMLRARAGA 199
+++L+++ RS+R M+R GA
Sbjct: 328 VIDYLIDLATRSRRRLMIRLVKGA 351
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 155 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 238
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 239 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 185 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 244
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 245 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 279
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 181 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 241 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG---- 77
I+G +GKT+L L + V+ ++ T+ I ++N K++ D G
Sbjct: 184 IVGYTNSGKTSLFNSLTGLTQKVD----TKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239
Query: 78 -QPGLRSIWEKYYEEAH---AVVFVIDAACPSRF--EDSKTALEKVLRNEDLQGAPLLIL 131
P + + EA A++ VID+ E +++ E +LR + G P+L+
Sbjct: 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVT 298
Query: 132 ANKQDLPDAVSADELARYLDL 152
NK D ++ D L + LDL
Sbjct: 299 LNK---IDKINGD-LYKKLDL 315
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + + +D+GGQ R W +E A++F + +
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + N+ +++ NK+DL
Sbjct: 241 EMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + + +D+GGQ R W +E A++F + +
Sbjct: 175 VKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 234
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 235 EXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL-----G 76
I+G +GKT+L L + V+ ++ T+ I ++N K++ D G
Sbjct: 184 IVGYTNSGKTSLFNSLTGLTQKVD----TKLFTTMSPKRYAIPINNRKIMLVDTVPFIRG 239
Query: 77 GQPGLRSIWEKYYEEAH---AVVFVIDAACPSRF--EDSKTALEKVLRNEDLQGAPLLIL 131
P + + EA A++ VID+ E +++ E +LR + G P+L+
Sbjct: 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVT 298
Query: 132 ANKQDLPDAVSADELARYLDL 152
NK D ++ D L + LDL
Sbjct: 299 LNK---IDKINGD-LYKKLDL 315
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL-----G 76
I+G +GKT+L L + V+ ++ T+ I ++N K++ D G
Sbjct: 184 IVGYTNSGKTSLFNSLTGLTQKVD----TKLFTTMSPKRYAIPINNRKIMLVDTVSFIRG 239
Query: 77 GQPGLRSIWEKYYEEAH---AVVFVIDAACPSRF--EDSKTALEKVLRNEDLQGAPLLIL 131
P + + EA A++ VID+ E +++ E +LR + G P+L+
Sbjct: 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVT 298
Query: 132 ANKQDLPDAVSADELARYLDL 152
NK D ++ D L + LDL
Sbjct: 299 LNK---IDKINGD-LYKKLDL 315
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 148 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 207
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 242
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWD 74
+ VL+LG GK+ L ++ VE P G R ++ + L+ +D
Sbjct: 3 YKVLLLGAPGVGKSALAR----IFGGVEDGPE---AEAAGHTYDRSIVVDGEEASLMVYD 55
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
+ Q G R + A V V FE + ++ R P++++ NK
Sbjct: 56 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115
Query: 135 QDLPDA--VSADE 145
DL + VS DE
Sbjct: 116 SDLVRSREVSVDE 128
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWD 74
+ VL+LG GK+ L ++ VE P G R ++ + L+ +D
Sbjct: 8 YKVLLLGAPGVGKSALAR----IFGGVEDGPE---AEAAGHTYDRSIVVDGEEASLMVYD 60
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
+ Q G R + A V V FE + ++ R P++++ NK
Sbjct: 61 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 135 QDLPDA--VSADE 145
DL + VS DE
Sbjct: 121 SDLVRSREVSVDE 133
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 365
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA----NKQDLPD 139
I K Y+ HA+ I A + E KTA++ ++N D G LI A Q LP
Sbjct: 160 IKAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPI 219
Query: 140 AVSADELARYLDLKKLDERVCMFEAVSGYDG 170
+ A KLD ++ EA+ G +G
Sbjct: 220 GLGQGLYA------KLDAKIA--EAMMGLNG 242
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGR-IEVSNS--KLVFWDL 75
V++LG GK++L+ + V + T+G+ + R +EV L WD
Sbjct: 10 VILLGDGGVGKSSLMNRY------VTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA---PLLILA 132
GQ +S+ +Y A + FE+ ++ + D++ P ++L
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 133 NKQDLPDAVSADELAR 148
NK D D E A+
Sbjct: 124 NKVDKEDRQVTTEEAQ 139
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWD 74
+ VL+LG GK+ L ++ VE P G R ++ + L+ +D
Sbjct: 8 YKVLLLGAPGVGKSALAR----IFGGVEDGPE---AEAAGHTYDRSIVVDGEEASLMVYD 60
Query: 75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
+ Q G R + A V V FE + ++ R P++++ NK
Sbjct: 61 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 135 QDLPDA--VSADE 145
DL + VS DE
Sbjct: 121 SDLVRSREVSVDE 133
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 214
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
V T G+ + +D+GGQ R W +E A++F + +
Sbjct: 178 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
+R +S + + N+ +++ NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 272
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
+ ILG GK++L + VEG D PT+ ++ N + L D
Sbjct: 4 IAILGYRSVGKSSLTIQF------VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTA 57
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ + Y + + + V FE K K+L P++++ NK+D
Sbjct: 58 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 117
Query: 137 L 137
L
Sbjct: 118 L 118
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
+ ILG GK++L + VEG D PT+ ++ N + L D
Sbjct: 9 IAILGYRSVGKSSLTIQF------VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTA 62
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ + Y + + + V FE K K+L P++++ NK+D
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 137 L 137
L
Sbjct: 123 L 123
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
+ ILG GK++L + VEG D PT+ ++ N + L D
Sbjct: 9 IAILGYRSVGKSSLTIQF------VEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTA 62
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
GQ + Y + + + V FE K K+L P++++ NK+D
Sbjct: 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 137 L 137
L
Sbjct: 123 L 123
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 58 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 118 LVGNKCDLAARTVESRQAQDLAR 140
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
+ ILG GK++L + VEG D PT+ ++ N + L D
Sbjct: 7 IAILGYRSVGKSSLTIQF------VEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTA 60
Query: 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA---PLLILAN 133
GQ + Y + + + V FE K K+L D+ G P++++ N
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL---DMVGKVQIPIMLVGN 117
Query: 134 KQDL 137
K+DL
Sbjct: 118 KKDL 121
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
L D G ++ ++Y + V FED E++ R +D P++
Sbjct: 53 LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 130 ILANKQDLP----DAVSADELAR 148
++ NK DL ++ A +LAR
Sbjct: 113 LVGNKCDLAARTVESRQAQDLAR 135
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPP 49
VLI+G+ GK+T++ KLK ++ G P
Sbjct: 101 RVLIVGVPNTGKSTIINKLKGKRASSVGAQP 131
>pdb|3I12|A Chain A, The Crystal Structure Of The D-alanyl-alanine Synthetase
A From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|B Chain B, The Crystal Structure Of The D-alanyl-alanine Synthetase
A From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|C Chain C, The Crystal Structure Of The D-alanyl-alanine Synthetase
A From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3I12|D Chain D, The Crystal Structure Of The D-alanyl-alanine Synthetase
A From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 364
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 15 KTEFHVLILGIDKAGK 30
KT F V++LGIDKAG+
Sbjct: 33 KTRFDVVLLGIDKAGQ 48
>pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase
A From Salmonella Enterica Typhimurium Complexed With
Adp
pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase
A From Salmonella Enterica Typhimurium Complexed With
Adp
pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase
A From Salmonella Enterica Typhimurium Complexed With
Adp
pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase
A From Salmonella Enterica Typhimurium Complexed With
Adp
Length = 367
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 15 KTEFHVLILGIDKAGK 30
KT F V++LGIDKAG+
Sbjct: 36 KTRFDVVLLGIDKAGQ 51
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV--IDAACPSRFED-------- 109
+G + S +D+GGQ R W +E AV+F I + FED
Sbjct: 175 VGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME 234
Query: 110 SKTALEKVLRNEDLQGAPLLILANKQDL 137
+K + VL+ + ++ NK D+
Sbjct: 235 TKELFDWVLKQPCFEKTSFMLFLNKFDI 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,031,089
Number of Sequences: 62578
Number of extensions: 241602
Number of successful extensions: 1159
Number of sequences better than 100.0: 317
Number of HSP's better than 100.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 355
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)