Query 028776
Match_columns 204
No_of_seqs 108 out of 1746
Neff 10.3
Searched_HMMs 29240
Date Tue Mar 26 18:26:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028776.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2267-2270//hhsearch_pdb/028776hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 1.0 1 1 184.0 12.7 163 14-188 10-178 (216)
2 2b6h_A ADP-ribosylation factor 1.0 1 1 182.9 15.5 178 2-186 14-191 (192)
3 1zj6_A ADP-ribosylation factor 1.0 1 1 182.4 18.6 181 1-189 1-181 (187)
4 1moz_A ARL1, ADP-ribosylation 1.0 1 1 180.6 17.0 180 1-187 1-181 (183)
5 1ksh_A ARF-like protein 2; sma 1.0 1 1 180.4 19.3 179 1-187 2-181 (186)
6 2x77_A ADP-ribosylation factor 1.0 1 1 178.8 15.3 181 1-188 3-186 (189)
7 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 177.8 17.8 170 14-190 319-488 (497)
8 3o47_A ADP-ribosylation factor 1.0 1 1 176.5 16.3 167 14-187 162-328 (329)
9 1zd9_A ADP-ribosylation factor 1.0 1 1 176.2 18.3 170 12-187 17-186 (188)
10 4bas_A ADP-ribosylation factor 1.0 1 1 175.2 15.7 173 12-190 12-193 (199)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=1.00 E-value=1 Score=184.04 Aligned_cols=163 Identities=23% Similarity=0.390 Sum_probs=134.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE--EEE--ECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 7761189998289997679999997301477899999654563201469--987--182799997589911199999840
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYY 89 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~ 89 (204)
+.+.+||+++|..|||||||++++.. +.+...+.+|++.++.. +.. ..+.+.+|||+|++.+..+...++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~------~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~ 83 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYI 83 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH------SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 98707999999499599999999973------999997589644477899997134589999998989632456789984
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 24898999995999889899999999998359999991999972899778--6699899978284554642038874113
Q 028776 90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG 167 (204)
Q Consensus 90 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (204)
+.++++++|||.++++||+.+..|+..+..... .++|+++|+||+|+.+ .+..++...+.. ..+.+|+++||
T Consensus 84 ~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~SA 157 (216)
T 4dkx_A 84 RDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSA 157 (216)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEEBT
T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCHHHCCCCCHHHHHHHHH-----HHCCEEEEEEC
T ss_conf 266589998513215777878899999998628-997299992026648618145999766998-----80980478847
Q ss_pred CCCCCHHHHHHHHHHHHHHCH
Q ss_conf 689896899999999998413
Q 028776 168 YDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 168 ~~~~~i~~l~~~i~~~~~~~~ 188 (204)
++|.||+++|+.|++.+....
T Consensus 158 ktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 158 KAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp TTTBSHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 989699999999999987502
No 2
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=1.00 E-value=1 Score=182.95 Aligned_cols=178 Identities=34% Similarity=0.655 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCH
Q ss_conf 54899998644077611899982899976799999973014778999996545632014699871827999975899111
Q 028776 2 FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 81 (204)
|+++.++++..+.++.++|+++|++|+|||||++++.+. ... .+.+|.+.....+......+.+||+||++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~------~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 14 LVPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLG------EIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKI 86 (192)
T ss_dssp ---CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSS------CCE-EEEEETTEEEEEEEETTEEEEEEECC-----
T ss_pred CCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC------CCC-CCCCCCCEEEEEEEECCEEEEEEECCCCHHH
T ss_conf 005999999855677667999999998799999999709------966-6589675667999989989999999997837
Q ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEE
Q ss_conf 99999840248989999959998898999999999983599999919999728997786699899978284554642038
Q 028776 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM 161 (204)
Q Consensus 82 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (204)
...+...+..+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+......+++..............+
T Consensus 87 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 166 (192)
T 2b6h_A 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWY 166 (192)
T ss_dssp CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEE
T ss_pred HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEE
T ss_conf 89999986259999999979877899999999999963421289859999989788788799999998681202687429
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8741136898968999999999984
Q 028776 162 FEAVSGYDGFGIKESVEWLVEVMER 186 (204)
Q Consensus 162 ~~~~Sa~~~~~i~~l~~~i~~~~~~ 186 (204)
++++||++|.|++++++++.+.+.+
T Consensus 167 ~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 167 VQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9977688767879999999999840
No 3
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=1.00 E-value=1 Score=182.42 Aligned_cols=181 Identities=33% Similarity=0.647 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCC
Q ss_conf 95489999864407761189998289997679999997301477899999654563201469987182799997589911
Q 028776 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (204)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 80 (204)
|..++.+++. .+.++.++|+++|..|+|||||++++.+.. .. .+.+|.+.....+...+..+.+||+||+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~------~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNE------VV-HTSPTIGSNVEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTS------CE-EEECCSCSSCEEEEETTEEEEEEECCC---
T ss_pred CCHHHHHHHH-HCCCCCCEEEEECCCCCCHHHHHHHHHCCC------CC-CCCCCCCCCEEEEEECCEEEEEEECCCCHH
T ss_conf 9268899998-648986489998999998899999983599------88-676888620699998998999998999975
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEE
Q ss_conf 19999984024898999995999889899999999998359999991999972899778669989997828455464203
Q 028776 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC 160 (204)
Q Consensus 81 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 160 (204)
+...+..++..+|++++|+|+++++++.....|+..+.......+.|+++|+||+|+......+++...+........+.
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 152 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW 152 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE
T ss_pred HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCC
T ss_conf 89999998458989999996989899999999999998464207981999987988767989999998858022037872
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 88741136898968999999999984134
Q 028776 161 MFEAVSGYDGFGIKESVEWLVEVMERSKR 189 (204)
Q Consensus 161 ~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~ 189 (204)
+++++||++|.|++++++++.+.+.....
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 153 HIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 79976688874899999999998887765
No 4
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=1.00 E-value=1 Score=180.58 Aligned_cols=180 Identities=38% Similarity=0.681 Sum_probs=150.9
Q ss_pred CHHHHHHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCC
Q ss_conf 95489999864407-76118999828999767999999730147789999965456320146998718279999758991
Q 028776 1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
|..++.++++..+. ++.++|+++|++|+|||||++++.+... ..+.++.+.....+...+..+.+||+||+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-------VTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-------EEECSSTTCCEEEEEETTEEEEEEEEC---
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-------CCCCCCCCCCEEEEEECCEEEEEEECCCCH
T ss_conf 9268999999852789865899999999999999999814996-------751782766648999888799999899987
Q ss_pred CHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 11999998402489899999599988989999999999835999999199997289977866998999782845546420
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 159 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (204)
.+...+...+..+|++++|+|++++.++.....|+..+.......+.|+++++||+|+......+++...+.........
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~ 153 (183)
T 1moz_A 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRS 153 (183)
T ss_dssp -CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSC
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 38899999835599999999798889999999999999707411798599999898888998989999870911105982
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3887411368989689999999999841
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 160 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
.+++++||++|.|++++++++.+.+.+.
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 154 WSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 2999842897748999999999999862
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=1.00 E-value=1 Score=180.36 Aligned_cols=179 Identities=36% Similarity=0.648 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCC
Q ss_conf 95489999864407-76118999828999767999999730147789999965456320146998718279999758991
Q 028776 1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (204)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 79 (204)
|++++. ++...+. ++.++|+++|.+|+|||||++++.+.. ...+.+|.+.....+......+.+||+||+.
T Consensus 2 ~mg~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 2 SMGLLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-------VDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCC-------CSSCCCCSSEEEEEEEETTEEEEEEEECCSH
T ss_pred CCCHHH-HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCC-------CCCCCCCCCCCEEEEEECCEEEEEEECCCCH
T ss_conf 421307-98764156871499999999999999999982699-------8743465760259999899999999899878
Q ss_pred CHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCE
Q ss_conf 11999998402489899999599988989999999999835999999199997289977866998999782845546420
Q 028776 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV 159 (204)
Q Consensus 80 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (204)
.+...+...+..+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+......+++.+.+.........
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (186)
T 1ksh_A 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHH 153 (186)
T ss_dssp HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHCCCCC
T ss_conf 68999999966799999999894878999999999999718300799589998686677898999999875844315885
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3887411368989689999999999841
Q 028776 160 CMFEAVSGYDGFGIKESVEWLVEVMERS 187 (204)
Q Consensus 160 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 187 (204)
.+++++||++|.|++++++++.+.+.+.
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 154 WRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 5999825888889799999999999853
No 6
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=1.00 E-value=1 Score=178.77 Aligned_cols=181 Identities=35% Similarity=0.594 Sum_probs=145.5
Q ss_pred CHHHHHHHHH--HHCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCC
Q ss_conf 9548999986--4407-761189998289997679999997301477899999654563201469987182799997589
Q 028776 1 MFSLFYGLWK--YIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (204)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 77 (204)
|+.++.+++. .... ++.++|+++|.+|+|||||++++.+.. . ..+.+|.+.....+......+.+||+||
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~------~-~~~~~t~~~~~~~~~~~~~~~~~~Dt~G 75 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGD------V-VTTVPTVGVNLETLQYKNISFEVWDLGG 75 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSC------C-EEECSSTTCCEEEEEETTEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCC------C-CCCCCCCCEEEEEEEECCEEEEEEECCC
T ss_conf 47899999877653067884299999999998999999997499------7-8748978657799998999999998999
Q ss_pred CCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 91119999984024898999995999889899999999998359999991999972899778669989997828455464
Q 028776 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE 157 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 157 (204)
++.+...+..+++.+|++++|+|+++++++.....|+..++......+.|+++|+||+|+......+++...+.......
T Consensus 76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 155 (189)
T 2x77_A 76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN 155 (189)
T ss_dssp SSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHCCC
T ss_conf 98689999988620999999995998889999999999997325208984999988988868899999998849233058
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHCH
Q ss_conf 2038874113689896899999999998413
Q 028776 158 RVCMFEAVSGYDGFGIKESVEWLVEVMERSK 188 (204)
Q Consensus 158 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 188 (204)
...+++++||+++.|++++++++.+.+.+..
T Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 156 RTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7538997427776689999999999998653
No 7
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=177.83 Aligned_cols=170 Identities=34% Similarity=0.660 Sum_probs=146.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 77611899982899976799999973014778999996545632014699871827999975899111999998402489
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
....++|+++|.+|+|||||++++++.. ...+.+|.+..+..+...+..+.+|||||+..+...+..++..+|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~-------~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 391 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQ-------SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 391 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSS-------CCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCC-------CCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 6664069998279887899999984599-------887478656258999967889999989985878999999865698
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCH
Q ss_conf 89999959998898999999999983599999919999728997786699899978284554642038874113689896
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 173 (204)
++++|+|++++.+|..+..|+..++......++|+++|+||+|+.......++...+..........+++++||++|+|+
T Consensus 392 ~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 392 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCCH
T ss_conf 89999989666679999999999853130289868999978778767899999999661245248728999779979799
Q ss_pred HHHHHHHHHHHHHCHHH
Q ss_conf 89999999999841347
Q 028776 174 KESVEWLVEVMERSKRT 190 (204)
Q Consensus 174 ~~l~~~i~~~~~~~~~~ 190 (204)
+++|++|.+.+......
T Consensus 472 ~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 472 YEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp HHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999999733899
No 8
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=176.50 Aligned_cols=167 Identities=35% Similarity=0.673 Sum_probs=143.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 77611899982899976799999973014778999996545632014699871827999975899111999998402489
Q 028776 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (204)
Q Consensus 14 ~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 93 (204)
.++.++|+++|.+|+|||||++++.+. ... ...+|.+.....+......+.+|||||++.+...+..++..+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~------~~~-~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 234 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLG------EIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 234 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSS------CCE-EEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCC------CCC-CCCCCCCEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 667535999899986479999999679------877-7666454279999618589999989997767899999861598
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCH
Q ss_conf 89999959998898999999999983599999919999728997786699899978284554642038874113689896
Q 028776 94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGI 173 (204)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 173 (204)
++++|+|++++.+|.....++..++......++|+++|+||+|+......+++...+..........+++++||++|.||
T Consensus 235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 235 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGL 314 (329)
T ss_dssp EEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCCCCCH
T ss_conf 89999979956789999999999985013499938999989557765589999998554445237977999979989699
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 89999999999841
Q 028776 174 KESVEWLVEVMERS 187 (204)
Q Consensus 174 ~~l~~~i~~~~~~~ 187 (204)
+++|++|.+.+.+.
T Consensus 315 ~el~~~l~~~l~~~ 328 (329)
T 3o47_A 315 YEGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999856
No 9
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=1.00 E-value=1 Score=176.18 Aligned_cols=170 Identities=33% Similarity=0.623 Sum_probs=142.5
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 40776118999828999767999999730147789999965456320146998718279999758991119999984024
Q 028776 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (204)
Q Consensus 12 ~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 91 (204)
...++.++|+++|..|+|||||++++.+. .....+.++.+..+..+......+.+||+||+..+...+..++..
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASG------QFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRG 90 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHS------CCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCC------CCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 67887018999999998799999999729------988765798851489997088889999999987688999999836
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
Q ss_conf 89899999599988989999999999835999999199997289977866998999782845546420388741136898
Q 028776 92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGF 171 (204)
Q Consensus 92 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (204)
+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.......++...+..........+++++||++|.
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCC
T ss_conf 99999999898878999999999999818033799889999897775678999999985834440477069999798797
Q ss_pred CHHHHHHHHHHHHHHC
Q ss_conf 9689999999999841
Q 028776 172 GIKESVEWLVEVMERS 187 (204)
Q Consensus 172 ~i~~l~~~i~~~~~~~ 187 (204)
|++++|+++.+.+...
T Consensus 171 gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 171 NIDITLQWLIQHSKSR 186 (188)
T ss_dssp THHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 8999999999998863
No 10
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=1.00 E-value=1 Score=175.22 Aligned_cols=173 Identities=33% Similarity=0.600 Sum_probs=143.7
Q ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 407761189998289997679999997301477899999-6545632014699871827999975899111999998402
Q 028776 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE 90 (204)
Q Consensus 12 ~~~~~~~~i~iiG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 90 (204)
......++|+++|..|||||||++++++ ..... .+.++.+.....+......+.+||+||+..+...+..++.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKP------AQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSC------CC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHC------CCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 6899976899999999998999999961------7876566566255038999959979999989998757888999986
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCC-------CCCEEEEEEECCCCCCCCCHHHHHHHHCCCCC-CCCEEEE
Q ss_conf 489899999599988989999999999835999-------99919999728997786699899978284554-6420388
Q 028776 91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-------QGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMF 162 (204)
Q Consensus 91 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~ 162 (204)
.+|++++|+|++++++|.....|+..++..... .+.|+++|+||+|+......+++...+..... .....++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCEEEE
T ss_conf 08989999989857779999999999984756531023568998899997867778879999999856520226971699
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf 7411368989689999999999841347
Q 028776 163 EAVSGYDGFGIKESVEWLVEVMERSKRT 190 (204)
Q Consensus 163 ~~~Sa~~~~~i~~l~~~i~~~~~~~~~~ 190 (204)
+++||++|.|++++|+++.+.+.+....
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9831787568999999999999987514
Done!