BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028777
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LBW5|PHI_MYCGS 3-hexulose-6-phosphate isomerase OS=Mycobacterium gastri GN=rmpB
PE=2 SV=1
Length = 199
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 9/204 (4%)
Query: 2 ASENSSSMSSLASQICNQIASIFSKPTAPHPPPLD-IMVAELTNTATQKGSVFLYGVGRE 60
A+E ++ + I N + S+ A +D VA L Q G VF+ G GR
Sbjct: 4 AAEADGAVKVVGDDITNNL-SLVRDEVADTAAKVDPEQVAVLARQIVQPGRVFVAGAGRS 62
Query: 61 GLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGAR 120
GL+L+ MRL H G++ H+ D TTP IS+ DLL+ ++G G S V A+ GAR
Sbjct: 63 GLVLRMAAMRLMHFGLTVHVAGDTTTPAISAGDLLLVASGSGTTSGVVKSAETAKKAGAR 122
Query: 121 VLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEM 180
+ T P+S A V +PA D G SR GS++E +FV+ E
Sbjct: 123 IAAFTTNPDS-PLAGLADAVVIIPAAQKTD----HGSHISRQY--AGSLFEQVLFVVTEA 175
Query: 181 VVYKLGEALGQSPEAVRSRHTNLE 204
V L + E + +RH NLE
Sbjct: 176 VFQSLWDHTEVEAEELWTRHANLE 199
>sp|P42404|PHI_BACSU 3-hexulose-6-phosphate isomerase OS=Bacillus subtilis (strain 168)
GN=hxlB PE=1 SV=1
Length = 185
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAIC 111
+F G GR GLM K+ MRL H+G + H+V ++ TPP++ DL+I +G G ++
Sbjct: 39 IFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTA 98
Query: 112 SRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYE 171
++A+S V LT PES S K A ++ +P + D G K+ + PMGS++E
Sbjct: 99 AKAKSLHGIVAALTINPES-SIGKQADLIIRMPG---SPKDQSNGSYKT--IQPMGSLFE 152
Query: 172 GAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204
+ + ++ V+ KL E G E + + H NLE
Sbjct: 153 QTLLLFYDAVILKLMEKKGLDSETMFTHHANLE 185
>sp|Q9YAK0|Y1940_AERPE Uncharacterized protein APE_1940.1 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1940.1 PE=3 SV=2
Length = 212
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 12/202 (5%)
Query: 7 SSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKA 66
+MS +A I N I I +D V EL +K V + G GR GL+ KA
Sbjct: 18 KTMSEIALFIINSINEI-------DVGQVDRFVGELERVYREKRKVLVMGAGRSGLVGKA 70
Query: 67 LCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126
MRL HLG +++++ + P + DL++A +G G + A+ GA V +T
Sbjct: 71 FAMRLLHLGFNSYVLGETIVPSVREGDLVVAISGSGRTKVIVTAAETAKQVGATVAAITT 130
Query: 127 QPESGSSVKHASVVAYVPAQTMADDDDEQGKEK----SRPLMPMGSVYEGAMFVLFEMVV 182
P+S + + +V VP +T + D+ + PL P+G+++E V + V+
Sbjct: 131 YPDSPLG-RLSDIVVRVPGRTKSSKMDDYFARQILGIHEPLAPLGTLFEDTTMVFLDGVI 189
Query: 183 YKLGEALGQSPEAVRSRHTNLE 204
Y L LG E +R+ H N+E
Sbjct: 190 YSLMTRLGIDEEYMRNMHANVE 211
>sp|O26351|Y249_METTH Uncharacterized protein MTH_249 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_249 PE=3 SV=1
Length = 197
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 26/182 (14%)
Query: 35 LDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDL 94
L++M++++ + + SVF+ G GR L+ KA MRL HLG H+V D+TTP I D
Sbjct: 30 LEMMISKIMDAS----SVFIVGTGRSELIGKAFAMRLMHLGFKVHVVGDVTTPAIRDEDC 85
Query: 95 LIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTM------ 148
LIA +G G TV +RS GA V+ +TA PES + ++ VV +P++T
Sbjct: 86 LIAISGSGETKTVTLAAETSRSVGATVVAVTATPES-TLTGYSDVVICIPSKTKEPWKYY 144
Query: 149 ------ADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTN 202
+ DD L PMG+++E + + + ++ + LG+ + ++ RH
Sbjct: 145 TSGVLRGEYDD---------LTPMGTLFEDSTHLFLDGLIAEFMSILGKREKDLKERHAI 195
Query: 203 LE 204
+E
Sbjct: 196 IE 197
>sp|O28478|Y1796_ARCFU Uncharacterized protein AF_1796 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_1796 PE=1 SV=1
Length = 183
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 39 VAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIAS 98
V E+ S+F+ G GR G + KA MRL HLG + ++V + TP I+ D+L+A
Sbjct: 24 VGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVAI 83
Query: 99 AGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKE 158
+G G ++V I +A+ G++++ +T + +S S K A VV V + + D E
Sbjct: 84 SGSGETTSVVNISKKAKDIGSKLVAVTGKRDS-SLAKMADVVMVVKGKMKQERD-----E 137
Query: 159 KSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204
L P+G+++E + + +V ++ + + + +RH LE
Sbjct: 138 ILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLTEKDLEARHAVLE 183
>sp|Q9S0X3|PHI_METAM 3-hexulose-6-phosphate isomerase OS=Methylomonas aminofaciens
GN=rmpB PE=1 SV=1
Length = 181
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 50 GSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDA 109
G F+ G GR L+ + MRL H G +V ++ TP I + DL I +G G T+
Sbjct: 35 GRTFIGGAGRSLLVSRFFAMRLVHAGYQVSMVGEVVTPSIQAGDLFIVISGSGSTETLMP 94
Query: 110 ICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMAD------DDDEQGKEKSRPL 163
+ +A+S GA++++++ + +S P +AD +D +K+
Sbjct: 95 LVKKAKSQGAKIIVISMKAQS-------------PMAELADLVVPVGGNDANAFDKTHG- 140
Query: 164 MPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204
MPMG+++E + E + KL + G + E +R+ H NLE
Sbjct: 141 MPMGTIFELSTLWFLEATIAKLVDQKGLTEEGMRAIHANLE 181
>sp|Q58644|PHI_METJA 3-hexulose-6-phosphate isomerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=phi PE=1 SV=1
Length = 180
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 42 LTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGP 101
L + + +F++GVGR G + + MRL HLG ++ V + TTP +DLLI +G
Sbjct: 33 LIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGS 92
Query: 102 GGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSR 161
G +V + +A++ ++ + E G+ V+ A + +P + K
Sbjct: 93 GRTESVLTVAKKAKNINNNIIAIVC--ECGNVVEFADLT--IPLEV-----------KKS 137
Query: 162 PLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNL 203
+PMG+ +E + ++V+ ++ + L + RH NL
Sbjct: 138 KYLPMGTTFEETALIFLDLVIAEIMKRLNLDESEIIKRHCNL 179
>sp|B3DLB3|ANM2_XENTR Protein arginine N-methyltransferase 2 OS=Xenopus tropicalis
GN=prmt2 PE=2 SV=1
Length = 433
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 117 YGARVLLLTAQPESGSSVKHASVVAYVPAQTMADD-DDEQGKEKSRPL 163
+G +VLLL+A + VKH + YVPA + D +D++ E P
Sbjct: 53 FGDKVLLLSAVTQDWWWVKHNGICGYVPASYLHDALNDQEDTEVDDPW 100
>sp|Q979Y7|GGR_THEVO Digeranylgeranylglycerophospholipid reductase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV1023 PE=3 SV=1
Length = 396
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 93 DLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVK 135
D+L+ GPGG + A YG R L++ +PE GS V+
Sbjct: 5 DVLVIGGGPGGSTA----ARYAAKYGLRTLMIEKRPEIGSPVR 43
>sp|Q8SQR2|KC12_ENCCU Probable casein kinase I homolog ECU11_1980 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU11_1980 PE=3 SV=1
Length = 318
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 100 GPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEK 159
G GGF V + +A + + T P++G + S++ + A + + QG EK
Sbjct: 15 GKGGFGKVYEVKKKADQKSYALKIETNAPKAGRN----SIINEIQAYS-----ELQGCEK 65
Query: 160 SRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSP 193
L+ GS YEG F++ ++ Y L + L + P
Sbjct: 66 IPRLVDHGS-YEGLTFLVLPLLKYSLKDLLERHP 98
>sp|Q8PH09|ILVC_XANAC Ketol-acid reductoisomerase OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=ilvC PE=3 SV=1
Length = 333
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 63 MLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPG 102
M + C+ AH G++ H FDM TP + +L+A GPG
Sbjct: 87 MKQGACLLFAH-GLNVH--FDMITPRADLDVVLVAPKGPG 123
>sp|P16940|YIS2_SHISO Insertion element IS600 uncharacterized 31 kDa protein OS=Shigella
sonnei PE=4 SV=1
Length = 272
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 2 ASENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGV 57
A+ NS+ +A + NQ + PTAP+ + VA+LT ATQ+G ++L G+
Sbjct: 85 ATTNSNHNLPVAPNLLNQTFA----PTAPN----QVWVADLTYVATQEGWLYLAGI 132
>sp|P61526|ASSY_THET2 Argininosuccinate synthase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=argG PE=3 SV=1
Length = 400
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 96 IASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMA---DDD 152
I A GG T + +YGA V+ TA G V+ A A + A D
Sbjct: 3 IVLAYSGGLDTSIILKWLKETYGAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLK 62
Query: 153 DEQGKEKSRPLMPMGSVYEG 172
+E ++ P+M G+VYEG
Sbjct: 63 EEFVRDFVFPMMRAGAVYEG 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,618,368
Number of Sequences: 539616
Number of extensions: 2806235
Number of successful extensions: 7821
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7805
Number of HSP's gapped (non-prelim): 27
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)