Query 028777
Match_columns 204
No_of_seqs 169 out of 1553
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 16:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03127 RuMP_HxlB 6-phospho 100.0 1.9E-33 4.1E-38 219.1 22.2 177 15-204 3-179 (179)
2 cd05005 SIS_PHI Hexulose-6-pho 100.0 1.6E-31 3.5E-36 208.2 22.1 178 11-201 2-179 (179)
3 COG1737 RpiR Transcriptional r 100.0 5.6E-28 1.2E-32 200.7 16.9 170 8-198 96-270 (281)
4 COG0794 GutQ Predicted sugar p 100.0 3.8E-27 8.2E-32 183.7 20.2 176 8-202 4-185 (202)
5 PRK15482 transcriptional regul 99.9 1.6E-26 3.4E-31 192.5 17.8 167 11-198 104-275 (285)
6 PRK11543 gutQ D-arabinose 5-ph 99.9 5.6E-26 1.2E-30 191.9 20.6 174 9-202 9-188 (321)
7 PRK11557 putative DNA-binding 99.9 3.3E-26 7.1E-31 189.8 15.1 166 9-195 95-265 (278)
8 PRK11337 DNA-binding transcrip 99.9 1.6E-25 3.4E-30 186.9 19.0 166 7-193 105-275 (292)
9 PRK10892 D-arabinose 5-phospha 99.9 8.3E-25 1.8E-29 185.2 20.6 176 7-202 12-193 (326)
10 PRK11302 DNA-binding transcrip 99.9 1.2E-24 2.7E-29 180.7 17.1 164 8-193 94-262 (284)
11 PRK14101 bifunctional glucokin 99.9 7.1E-23 1.5E-27 187.2 17.9 166 8-195 434-607 (638)
12 TIGR00393 kpsF KpsF/GutQ famil 99.9 1.3E-22 2.8E-27 167.2 17.0 141 50-202 1-146 (268)
13 PRK02947 hypothetical protein; 99.9 5.8E-23 1.3E-27 167.5 14.2 185 8-202 3-226 (246)
14 cd05014 SIS_Kpsf KpsF-like pro 99.9 2.4E-22 5.2E-27 148.0 15.3 122 50-183 1-127 (128)
15 cd05006 SIS_GmhA Phosphoheptos 99.9 6.5E-22 1.4E-26 153.9 15.3 123 21-147 8-156 (177)
16 PRK00414 gmhA phosphoheptose i 99.9 9.8E-22 2.1E-26 154.7 14.3 113 34-147 29-166 (192)
17 PRK13937 phosphoheptose isomer 99.9 9.9E-22 2.1E-26 154.3 13.3 114 33-147 22-161 (188)
18 PRK13936 phosphoheptose isomer 99.9 6.3E-21 1.4E-25 150.8 16.9 156 10-189 8-192 (197)
19 PRK13938 phosphoheptose isomer 99.9 4.6E-21 1E-25 151.0 15.9 137 32-188 28-190 (196)
20 cd05013 SIS_RpiR RpiR-like pro 99.9 5.2E-21 1.1E-25 141.7 15.0 132 38-183 2-138 (139)
21 PRK10886 DnaA initiator-associ 99.9 2.2E-20 4.9E-25 147.0 19.2 113 34-147 26-167 (196)
22 TIGR00441 gmhA phosphoheptose 99.9 3.2E-21 6.9E-26 146.8 13.1 106 40-146 2-133 (154)
23 cd05008 SIS_GlmS_GlmD_1 SIS (S 99.8 3.7E-20 8.1E-25 135.9 13.9 95 51-146 1-100 (126)
24 PF01380 SIS: SIS domain SIS d 99.8 3.3E-20 7E-25 136.7 13.5 124 45-183 1-130 (131)
25 PRK05441 murQ N-acetylmuramic 99.8 5.2E-20 1.1E-24 154.0 14.8 167 11-191 25-218 (299)
26 cd05007 SIS_Etherase N-acetylm 99.8 8.5E-20 1.9E-24 149.7 15.2 168 10-191 11-205 (257)
27 cd05710 SIS_1 A subgroup of th 99.8 1.1E-19 2.3E-24 132.9 12.2 95 51-146 1-101 (120)
28 TIGR00274 N-acetylmuramic acid 99.8 3.1E-19 6.7E-24 148.6 13.9 168 11-192 20-214 (291)
29 PRK11382 frlB fructoselysine-6 99.8 3E-18 6.5E-23 146.0 15.7 108 38-146 31-146 (340)
30 PRK12570 N-acetylmuramic acid- 99.8 4.5E-18 9.7E-23 142.0 15.1 169 10-192 20-215 (296)
31 COG4821 Uncharacterized protei 99.8 2.8E-18 6E-23 132.2 9.1 174 20-198 9-219 (243)
32 PRK00331 glucosamine--fructose 99.8 4.1E-17 8.8E-22 148.7 18.3 138 38-190 278-420 (604)
33 COG0279 GmhA Phosphoheptose is 99.7 1.6E-17 3.4E-22 124.7 11.4 115 31-146 23-163 (176)
34 TIGR01135 glmS glucosamine--fr 99.7 1.6E-16 3.4E-21 144.9 17.1 132 44-190 286-422 (607)
35 PTZ00295 glucosamine-fructose- 99.7 5.1E-16 1.1E-20 142.3 20.2 107 39-146 312-423 (640)
36 cd05017 SIS_PGI_PMI_1 The memb 99.7 9.4E-17 2E-21 117.0 11.9 93 51-146 1-99 (119)
37 PTZ00394 glucosamine-fructose- 99.7 3.7E-16 8E-21 143.4 17.9 107 40-147 345-456 (670)
38 PLN02981 glucosamine:fructose- 99.7 2.2E-15 4.7E-20 138.7 19.2 110 37-147 351-465 (680)
39 PF13580 SIS_2: SIS domain; PD 99.7 9.2E-17 2E-21 120.1 7.0 111 16-126 2-138 (138)
40 cd05009 SIS_GlmS_GlmD_2 SIS (S 99.7 1.9E-15 4.2E-20 114.1 13.3 136 38-195 2-144 (153)
41 COG2222 AgaS Predicted phospho 99.6 8E-15 1.7E-19 124.2 15.1 109 38-147 26-142 (340)
42 PRK08674 bifunctional phosphog 99.6 1.9E-14 4E-19 122.7 15.9 99 44-145 29-133 (337)
43 COG0449 GlmS Glucosamine 6-pho 99.6 8.9E-14 1.9E-18 124.0 18.1 131 45-190 279-414 (597)
44 cd04795 SIS SIS domain. SIS (S 99.5 4.6E-14 9.9E-19 96.6 8.6 74 52-125 1-81 (87)
45 TIGR02815 agaS_fam putative su 99.5 4.5E-13 9.8E-18 115.5 16.2 108 38-146 29-153 (372)
46 TIGR02128 G6PI_arch bifunction 99.5 2.3E-13 4.9E-18 114.4 12.6 102 42-146 14-122 (308)
47 cd05015 SIS_PGI_1 Phosphogluco 99.4 1.5E-12 3.2E-17 99.5 11.2 102 35-138 3-127 (158)
48 COG2103 Predicted sugar phosph 99.4 2.3E-12 5E-17 103.6 10.5 147 32-191 43-216 (298)
49 PTZ00295 glucosamine-fructose- 99.3 3.5E-11 7.6E-16 110.5 12.1 137 37-195 484-629 (640)
50 KOG1268 Glucosamine 6-phosphat 99.1 2.2E-09 4.7E-14 93.7 12.1 110 38-148 344-458 (670)
51 PRK03868 glucose-6-phosphate i 98.6 7.5E-07 1.6E-11 77.8 11.9 105 39-145 45-174 (410)
52 PF10740 DUF2529: Protein of u 98.5 6.5E-07 1.4E-11 68.2 8.5 131 14-148 3-139 (172)
53 PRK09533 bifunctional transald 98.4 1.2E-06 2.5E-11 83.1 9.3 100 37-138 441-561 (948)
54 PRK00973 glucose-6-phosphate i 98.3 5.8E-06 1.3E-10 72.9 10.4 108 37-145 59-197 (446)
55 PRK14096 pgi glucose-6-phospha 98.3 9.1E-06 2E-10 72.8 11.1 106 38-145 93-233 (528)
56 TIGR01135 glmS glucosamine--fr 98.2 5.8E-05 1.3E-09 69.3 15.6 138 38-195 452-596 (607)
57 PTZ00394 glucosamine-fructose- 98.2 4.1E-05 8.8E-10 71.0 14.1 138 38-195 515-659 (670)
58 PRK14095 pgi glucose-6-phospha 98.1 4.4E-05 9.5E-10 68.6 11.4 101 37-139 129-258 (533)
59 PRK00331 glucosamine--fructose 98.0 0.00025 5.4E-09 65.1 15.9 137 38-195 450-593 (604)
60 COG0449 GlmS Glucosamine 6-pho 97.9 0.00051 1.1E-08 62.2 14.6 152 14-196 429-587 (597)
61 PLN02981 glucosamine:fructose- 97.8 0.00076 1.6E-08 62.8 15.4 138 38-195 523-669 (680)
62 COG0166 Pgi Glucose-6-phosphat 97.8 0.00022 4.8E-09 62.9 10.0 96 49-145 79-196 (446)
63 PRK14097 pgi glucose-6-phospha 97.6 0.00098 2.1E-08 59.1 11.3 107 38-145 61-202 (448)
64 cd05010 SIS_AgaS_like AgaS-lik 97.5 0.0018 3.9E-08 49.0 10.3 125 52-195 1-137 (151)
65 COG2222 AgaS Predicted phospho 97.4 0.0043 9.2E-08 53.1 12.2 131 38-194 190-327 (340)
66 PRK11382 frlB fructoselysine-6 97.3 0.0067 1.5E-07 51.9 13.2 126 38-195 197-330 (340)
67 PRK00179 pgi glucose-6-phospha 97.3 0.0042 9.2E-08 56.3 11.5 107 37-145 123-264 (548)
68 TIGR02815 agaS_fam putative su 97.2 0.03 6.4E-07 48.6 16.1 139 38-195 201-353 (372)
69 PLN02649 glucose-6-phosphate i 97.1 0.0061 1.3E-07 55.4 10.6 106 37-145 125-270 (560)
70 PF00342 PGI: Phosphoglucose i 96.9 0.006 1.3E-07 54.7 9.4 95 50-145 97-215 (486)
71 TIGR01012 Sa_S2_E_A ribosomal 96.8 0.066 1.4E-06 42.2 12.8 113 49-191 61-178 (196)
72 PTZ00254 40S ribosomal protein 96.7 0.057 1.2E-06 44.1 12.5 115 44-191 66-188 (249)
73 PRK04020 rps2P 30S ribosomal p 96.5 0.16 3.4E-06 40.4 13.7 121 38-191 54-184 (204)
74 PTZ00430 glucose-6-phosphate i 96.4 0.02 4.4E-07 51.9 9.0 91 38-128 121-248 (552)
75 cd02767 MopB_ydeP The MopB_yde 95.8 0.18 3.8E-06 46.4 12.1 111 34-144 82-233 (574)
76 PRK05299 rpsB 30S ribosomal pr 95.5 0.46 1E-05 39.1 12.4 72 91-192 157-228 (258)
77 TIGR01701 Fdhalpha-like oxidor 94.9 0.41 8.8E-06 45.4 11.8 111 34-144 117-269 (743)
78 PRK09939 putative oxidoreducta 94.5 0.56 1.2E-05 44.5 11.5 111 34-144 126-279 (759)
79 TIGR01553 formate-DH-alph form 94.3 0.51 1.1E-05 46.2 11.0 54 90-145 220-275 (1009)
80 cd01425 RPS2 Ribosomal protein 93.9 1.9 4E-05 33.9 11.7 47 90-143 126-172 (193)
81 CHL00067 rps2 ribosomal protei 93.7 3.1 6.6E-05 33.7 12.8 46 91-143 161-206 (230)
82 PRK12311 rpsB 30S ribosomal pr 93.6 2.5 5.3E-05 36.1 12.6 46 91-143 152-197 (326)
83 TIGR01011 rpsB_bact ribosomal 93.6 3.3 7.1E-05 33.4 13.3 46 91-143 155-200 (225)
84 TIGR00315 cdhB CO dehydrogenas 93.5 1.1 2.4E-05 34.2 9.5 97 40-143 18-146 (162)
85 PF10432 bact-PGI_C: Bacterial 93.5 2.3 5E-05 32.2 11.2 126 33-195 2-143 (155)
86 COG0052 RpsB Ribosomal protein 93.3 1.5 3.1E-05 35.9 10.2 45 92-143 157-201 (252)
87 cd02759 MopB_Acetylene-hydrata 93.0 2.5 5.3E-05 37.8 12.4 55 89-145 158-215 (477)
88 KOG1268 Glucosamine 6-phosphat 92.7 3.3 7.2E-05 37.5 12.3 135 37-194 514-658 (670)
89 cd02754 MopB_Nitrate-R-NapA-li 92.5 3.3 7.1E-05 37.8 12.7 109 35-145 72-213 (565)
90 cd02762 MopB_1 The MopB_1 CD i 92.3 3.9 8.4E-05 37.2 12.9 55 89-145 154-216 (539)
91 PRK13532 nitrate reductase cat 92.2 2.2 4.8E-05 40.9 11.6 108 36-145 122-262 (830)
92 PF00318 Ribosomal_S2: Ribosom 91.9 5.5 0.00012 31.7 12.5 45 92-143 144-188 (211)
93 cd02750 MopB_Nitrate-R-NarG-li 91.7 3.8 8.2E-05 36.5 11.9 54 90-145 169-224 (461)
94 cd02755 MopB_Thiosulfate-R-lik 91.5 4.2 9.1E-05 36.1 12.0 56 88-145 153-211 (454)
95 TIGR01591 Fdh-alpha formate de 91.5 3.1 6.7E-05 38.7 11.6 109 35-145 70-209 (671)
96 TIGR00288 conserved hypothetic 91.4 4.3 9.3E-05 31.0 10.2 101 39-145 43-157 (160)
97 cd02752 MopB_Formate-Dh-Na-lik 91.0 5.1 0.00011 37.5 12.3 56 89-146 167-225 (649)
98 TIGR03479 DMSO_red_II_alp DMSO 90.3 4.1 8.8E-05 39.6 11.4 53 91-145 224-278 (912)
99 PF10087 DUF2325: Uncharacteri 90.3 2.7 5.8E-05 29.0 7.7 74 52-127 2-84 (97)
100 cd02753 MopB_Formate-Dh-H Form 90.0 6.1 0.00013 35.5 11.8 109 35-145 71-210 (512)
101 cd02766 MopB_3 The MopB_3 CD i 90.0 4.9 0.00011 36.2 11.1 54 90-145 156-211 (501)
102 PF01936 NYN: NYN domain; Int 89.4 1.9 4.2E-05 31.4 6.8 101 38-143 21-145 (146)
103 PRK06702 O-acetylhomoserine am 88.2 11 0.00023 33.5 11.7 111 33-146 60-208 (432)
104 PRK01710 murD UDP-N-acetylmura 87.9 4 8.6E-05 36.3 9.0 41 38-82 4-44 (458)
105 cd01410 SIRT7 SIRT7: Eukaryoti 87.9 1.6 3.6E-05 34.6 5.8 52 89-142 153-204 (206)
106 PRK09004 FMN-binding protein M 87.7 1.8 4E-05 32.3 5.8 51 51-101 4-56 (146)
107 TIGR00853 pts-lac PTS system, 87.7 1.4 3E-05 30.5 4.7 77 52-130 7-87 (95)
108 cd02763 MopB_2 The MopB_2 CD i 87.5 13 0.00029 35.0 12.3 54 90-145 154-209 (679)
109 cd02761 MopB_FmdB-FwdB The Mop 87.3 4.4 9.6E-05 35.2 8.8 110 34-145 55-193 (415)
110 TIGR01706 NAPA periplasmic nit 86.9 9.9 0.00021 36.6 11.5 108 36-145 122-262 (830)
111 cd02757 MopB_Arsenate-R This C 86.9 14 0.0003 33.6 11.9 56 88-145 159-218 (523)
112 cd02765 MopB_4 The MopB_4 CD i 86.8 14 0.0003 33.9 12.0 53 91-145 159-213 (567)
113 cd06167 LabA_like LabA_like pr 86.5 7.3 0.00016 28.6 8.4 99 38-139 25-145 (149)
114 cd02770 MopB_DmsA-EC This CD ( 86.4 3.3 7.1E-05 38.3 7.8 54 90-145 165-224 (617)
115 PRK03806 murD UDP-N-acetylmura 86.4 3.8 8.2E-05 36.1 7.9 31 49-82 6-36 (438)
116 KOG0832 Mitochondrial/chloropl 86.0 17 0.00037 29.5 10.5 35 92-130 174-208 (251)
117 TIGR00644 recJ single-stranded 85.8 12 0.00027 34.1 11.1 94 32-129 37-145 (539)
118 PRK15488 thiosulfate reductase 85.7 14 0.0003 35.1 11.7 55 89-145 194-252 (759)
119 KOG2446 Glucose-6-phosphate is 85.6 5 0.00011 35.6 7.8 79 38-116 129-228 (546)
120 cd01409 SIRT4 SIRT4: Eukaryoti 85.5 1.9 4E-05 35.6 5.1 56 88-145 201-256 (260)
121 TIGR00511 ribulose_e2b2 ribose 85.4 4.3 9.3E-05 34.2 7.4 62 66-127 157-226 (301)
122 cd00368 Molybdopterin-Binding 85.0 6.5 0.00014 33.5 8.5 109 35-145 73-210 (374)
123 cd01413 SIR2_Af2 SIR2_Af2: Arc 84.4 2.4 5.3E-05 34.0 5.3 53 88-142 168-220 (222)
124 TIGR01973 NuoG NADH-quinone ox 84.2 7.1 0.00015 36.1 8.8 110 34-145 287-417 (603)
125 PTZ00409 Sir2 (Silent Informat 84.0 2.5 5.5E-05 35.1 5.3 55 88-144 196-251 (271)
126 COG2984 ABC-type uncharacteriz 83.9 7.1 0.00015 33.2 7.9 89 35-123 145-244 (322)
127 PRK08535 translation initiatio 83.9 6.8 0.00015 33.1 8.0 63 65-127 161-231 (310)
128 PRK09271 flavodoxin; Provision 83.4 17 0.00037 27.3 10.4 77 51-127 3-94 (160)
129 cd02768 MopB_NADH-Q-OR-NuoG2 M 83.2 14 0.0003 31.8 9.8 107 35-145 71-201 (386)
130 PRK08114 cystathionine beta-ly 83.0 25 0.00054 30.9 11.3 115 32-146 60-210 (395)
131 PF01053 Cys_Met_Meta_PP: Cys/ 82.7 10 0.00022 33.1 8.8 114 32-147 53-203 (386)
132 PRK14138 NAD-dependent deacety 82.6 2.2 4.7E-05 34.8 4.3 55 89-145 176-230 (244)
133 TIGR03129 one_C_dehyd_B formyl 82.4 7.2 0.00016 33.8 7.8 110 34-145 61-199 (421)
134 PRK02006 murD UDP-N-acetylmura 82.3 5.2 0.00011 35.9 7.1 32 48-82 6-37 (498)
135 PRK01390 murD UDP-N-acetylmura 82.2 5.7 0.00012 35.2 7.2 32 48-82 8-39 (460)
136 cd05564 PTS_IIB_chitobiose_lic 82.0 4.9 0.00011 27.7 5.4 77 52-130 3-83 (96)
137 cd05565 PTS_IIB_lactose PTS_II 81.5 4.6 0.0001 28.2 5.1 73 52-126 4-80 (99)
138 COG0626 MetC Cystathionine bet 81.4 33 0.00073 30.1 11.4 114 33-148 62-212 (396)
139 PRK06242 flavodoxin; Provision 81.2 12 0.00026 27.4 7.7 71 57-130 12-86 (150)
140 PF06283 ThuA: Trehalose utili 80.8 14 0.00031 29.1 8.4 64 62-125 19-88 (217)
141 TIGR02964 xanthine_xdhC xanthi 80.6 10 0.00022 30.9 7.6 78 46-128 97-197 (246)
142 COG4015 Predicted dinucleotide 80.4 6.1 0.00013 30.4 5.7 36 89-124 104-140 (217)
143 PRK00421 murC UDP-N-acetylmura 80.4 6.1 0.00013 35.1 6.8 33 48-82 6-38 (461)
144 PF13478 XdhC_C: XdhC Rossmann 80.0 5.9 0.00013 29.3 5.5 72 52-129 1-91 (136)
145 PRK05562 precorrin-2 dehydroge 79.9 23 0.00051 28.5 9.3 78 48-128 24-120 (223)
146 PRK08105 flavodoxin; Provision 79.1 7.9 0.00017 28.9 6.1 52 51-102 4-60 (149)
147 PRK05723 flavodoxin; Provision 79.1 5.5 0.00012 29.9 5.2 53 52-104 4-61 (151)
148 PRK07812 O-acetylhomoserine am 79.0 18 0.00039 32.1 9.2 109 34-145 69-215 (436)
149 TIGR02166 dmsA_ynfE anaerobic 79.0 12 0.00027 35.7 8.7 54 90-145 213-273 (797)
150 cd01407 SIR2-fam SIR2 family o 78.9 6.1 0.00013 31.5 5.7 51 90-142 166-216 (218)
151 PTZ00408 NAD-dependent deacety 78.7 5.4 0.00012 32.5 5.4 52 89-142 170-221 (242)
152 TIGR01470 cysG_Nterm siroheme 78.7 28 0.0006 27.5 9.4 77 48-127 8-103 (205)
153 smart00642 Aamy Alpha-amylase 78.2 9.4 0.0002 29.1 6.3 72 58-130 16-96 (166)
154 TIGR01753 flav_short flavodoxi 78.1 22 0.00047 25.5 8.1 72 56-127 8-89 (140)
155 TIGR01754 flav_RNR ribonucleot 77.7 25 0.00054 25.7 9.2 76 52-127 4-90 (140)
156 PRK04690 murD UDP-N-acetylmura 77.5 8.8 0.00019 34.3 6.8 32 48-82 7-38 (468)
157 TIGR01081 mpl UDP-N-acetylmura 76.9 9.1 0.0002 33.9 6.7 30 51-82 1-30 (448)
158 PRK05569 flavodoxin; Provision 76.8 13 0.00028 27.0 6.6 77 53-129 8-94 (141)
159 COG0529 CysC Adenylylsulfate k 76.5 6.4 0.00014 30.8 4.9 77 40-119 14-96 (197)
160 PF00384 Molybdopterin: Molybd 76.2 15 0.00032 31.9 7.9 109 36-146 23-167 (432)
161 PRK02705 murD UDP-N-acetylmura 75.6 11 0.00025 33.2 7.0 29 51-82 2-30 (459)
162 COG1029 FwdB Formylmethanofura 75.3 11 0.00024 32.7 6.4 112 34-146 64-203 (429)
163 PRK06756 flavodoxin; Provision 75.3 27 0.00058 25.7 8.0 74 53-126 8-91 (148)
164 TIGR01087 murD UDP-N-acetylmur 74.9 24 0.00052 30.9 8.8 28 51-81 1-28 (433)
165 TIGR01580 narG respiratory nit 74.8 57 0.0012 33.0 11.9 52 92-145 246-299 (1235)
166 PTZ00445 p36-lilke protein; Pr 74.8 18 0.0004 29.0 7.2 86 42-130 9-103 (219)
167 PRK06703 flavodoxin; Provision 74.4 28 0.00061 25.6 8.0 74 52-125 5-89 (151)
168 PRK14573 bifunctional D-alanyl 74.4 22 0.00047 34.1 9.0 32 49-82 4-35 (809)
169 cd02764 MopB_PHLH The MopB_PHL 74.3 39 0.00084 30.6 10.2 110 34-145 116-258 (524)
170 COG1893 ApbA Ketopantoate redu 73.7 23 0.00049 29.9 8.0 74 51-127 2-103 (307)
171 PF01008 IF-2B: Initiation fac 73.0 8 0.00017 31.9 5.1 112 9-144 72-184 (282)
172 PRK03369 murD UDP-N-acetylmura 72.9 17 0.00036 32.7 7.4 33 47-82 10-42 (488)
173 PRK07860 NADH dehydrogenase su 72.7 22 0.00049 34.1 8.6 110 35-145 296-432 (797)
174 PRK04663 murD UDP-N-acetylmura 72.3 23 0.00051 31.2 8.2 19 49-67 7-25 (438)
175 PRK05613 O-acetylhomoserine am 72.0 59 0.0013 28.9 10.6 109 34-145 69-215 (437)
176 cd01412 SIRT5_Af1_CobB SIRT5_A 71.9 16 0.00034 29.2 6.4 53 89-143 162-214 (224)
177 cd05637 SIS_PGI_PMI_2 The memb 71.8 37 0.00079 24.8 11.6 118 39-193 3-132 (132)
178 COG1832 Predicted CoA-binding 71.6 39 0.00085 25.1 8.4 86 38-126 5-105 (140)
179 PRK00683 murD UDP-N-acetylmura 71.4 12 0.00026 32.8 6.1 68 49-122 3-87 (418)
180 COG1184 GCD2 Translation initi 71.1 56 0.0012 27.6 9.6 108 15-147 90-197 (301)
181 TIGR01082 murC UDP-N-acetylmur 70.8 16 0.00034 32.4 6.7 30 51-82 1-30 (448)
182 PRK11070 ssDNA exonuclease Rec 70.8 32 0.0007 31.8 8.8 95 32-130 52-162 (575)
183 PRK05939 hypothetical protein; 70.7 68 0.0015 28.0 10.6 112 32-145 45-191 (397)
184 PF01993 MTD: methylene-5,6,7, 70.4 10 0.00022 31.0 4.8 58 91-149 59-120 (276)
185 PRK09590 celB cellobiose phosp 70.2 11 0.00023 26.6 4.5 78 52-132 5-88 (104)
186 PRK08134 O-acetylhomoserine am 70.1 79 0.0017 28.0 11.1 110 34-145 64-209 (433)
187 PF13793 Pribosyltran_N: N-ter 70.0 34 0.00074 24.5 7.2 73 53-125 2-86 (116)
188 COG0773 MurC UDP-N-acetylmuram 69.9 18 0.00039 32.4 6.7 67 50-122 8-94 (459)
189 PRK14106 murD UDP-N-acetylmura 69.9 36 0.00078 29.9 8.8 32 48-82 4-35 (450)
190 PRK05568 flavodoxin; Provision 69.7 39 0.00086 24.4 8.2 76 52-127 7-91 (142)
191 PRK00553 ribose-phosphate pyro 69.3 33 0.00071 29.4 8.1 77 49-125 7-95 (332)
192 PF13241 NAD_binding_7: Putati 69.1 35 0.00075 23.5 7.7 75 48-127 6-94 (103)
193 PF00205 TPP_enzyme_M: Thiamin 69.0 24 0.00053 25.5 6.5 83 39-127 1-86 (137)
194 PRK04308 murD UDP-N-acetylmura 69.0 21 0.00045 31.5 7.1 32 48-82 4-35 (445)
195 PRK07050 cystathionine beta-ly 68.9 71 0.0015 27.8 10.3 111 32-145 63-210 (394)
196 PRK00994 F420-dependent methyl 68.8 7.7 0.00017 31.6 3.8 40 91-130 60-99 (277)
197 PRK00481 NAD-dependent deacety 68.8 12 0.00025 30.4 5.1 53 89-143 175-227 (242)
198 PRK00141 murD UDP-N-acetylmura 68.6 19 0.00041 32.2 6.8 31 48-81 14-44 (473)
199 PF08484 Methyltransf_14: C-me 68.5 18 0.0004 27.4 5.8 32 91-123 126-157 (160)
200 PRK08133 O-succinylhomoserine 68.4 80 0.0017 27.4 11.4 111 34-145 61-206 (390)
201 PF02558 ApbA: Ketopantoate re 68.4 4.7 0.0001 29.7 2.5 39 89-127 65-103 (151)
202 PRK07269 cystathionine gamma-s 68.0 75 0.0016 27.3 10.2 110 32-145 52-196 (364)
203 PF01113 DapB_N: Dihydrodipico 68.0 10 0.00022 27.3 4.2 36 89-127 65-100 (124)
204 cd00296 SIR2 SIR2 superfamily 68.0 14 0.00031 29.2 5.3 51 89-141 167-219 (222)
205 PLN02297 ribose-phosphate pyro 67.9 58 0.0013 27.8 9.2 78 48-126 13-104 (326)
206 smart00481 POLIIIAc DNA polyme 67.7 6.6 0.00014 24.8 2.8 24 105-128 15-38 (67)
207 PF09897 DUF2124: Uncharacteri 67.6 22 0.00048 26.7 5.8 46 38-83 6-54 (147)
208 TIGR01324 cysta_beta_ly_B cyst 67.0 58 0.0013 28.2 9.3 110 34-145 50-195 (377)
209 TIGR01752 flav_long flavodoxin 66.7 33 0.00071 26.0 6.9 70 56-125 9-85 (167)
210 PRK06249 2-dehydropantoate 2-r 66.6 47 0.001 27.8 8.5 40 90-129 71-110 (313)
211 KOG0053 Cystathionine beta-lya 66.4 90 0.0019 27.6 10.2 116 33-148 76-225 (409)
212 PRK06719 precorrin-2 dehydroge 66.1 54 0.0012 24.6 9.5 32 48-82 12-43 (157)
213 cd02760 MopB_Phenylacetyl-CoA- 66.0 35 0.00075 32.7 8.3 54 90-145 172-228 (760)
214 PTZ00145 phosphoribosylpyropho 66.0 48 0.001 29.6 8.6 78 48-125 116-205 (439)
215 PRK07810 O-succinylhomoserine 65.9 59 0.0013 28.4 9.2 111 32-145 68-215 (403)
216 COG0634 Hpt Hypoxanthine-guani 65.8 61 0.0013 25.2 10.0 104 33-139 15-140 (178)
217 PF01041 DegT_DnrJ_EryC1: DegT 65.1 77 0.0017 27.0 9.7 115 34-149 25-176 (363)
218 COG2179 Predicted hydrolase of 65.1 31 0.00067 26.6 6.3 67 70-145 22-91 (175)
219 PRK02472 murD UDP-N-acetylmura 64.8 51 0.0011 28.9 8.8 31 48-81 4-34 (447)
220 PF00466 Ribosomal_L10: Riboso 64.7 42 0.00091 22.9 9.5 76 36-112 7-96 (100)
221 PF03853 YjeF_N: YjeF-related 64.1 61 0.0013 24.6 9.8 83 49-145 26-108 (169)
222 cd02773 MopB_Res-Cmplx1_Nad11 64.1 48 0.001 28.5 8.3 93 34-126 69-183 (375)
223 PF00289 CPSase_L_chain: Carba 64.1 7.2 0.00016 27.7 2.6 46 98-145 7-53 (110)
224 cd01408 SIRT1 SIRT1: Eukaryoti 64.0 16 0.00034 29.6 4.9 54 89-145 173-228 (235)
225 PRK04923 ribose-phosphate pyro 63.9 57 0.0012 27.8 8.4 78 48-125 3-92 (319)
226 PRK08248 O-acetylhomoserine am 63.8 83 0.0018 27.8 9.8 111 32-145 62-209 (431)
227 cd01411 SIR2H SIR2H: Uncharact 63.5 14 0.0003 29.7 4.5 52 89-143 169-220 (225)
228 COG3981 Predicted acetyltransf 62.7 9.6 0.00021 29.4 3.2 33 101-134 112-145 (174)
229 cd01965 Nitrogenase_MoFe_beta_ 62.7 44 0.00095 29.4 7.9 93 34-127 68-191 (428)
230 PRK13170 hisH imidazole glycer 62.3 21 0.00047 27.8 5.3 68 55-129 8-81 (196)
231 cd01481 vWA_collagen_alpha3-VI 62.2 19 0.00042 27.2 4.9 35 93-127 108-142 (165)
232 PF05198 IF3_N: Translation in 62.1 10 0.00022 25.2 2.9 45 94-139 14-61 (76)
233 PRK08574 cystathionine gamma-s 62.1 89 0.0019 27.1 9.6 110 33-145 52-197 (385)
234 PRK03803 murD UDP-N-acetylmura 62.0 36 0.00077 30.0 7.2 33 47-82 4-36 (448)
235 PRK05967 cystathionine beta-ly 61.9 1.1E+02 0.0024 26.8 12.6 112 33-147 63-211 (395)
236 PRK06372 translation initiatio 61.9 45 0.00098 27.4 7.2 65 64-128 123-195 (253)
237 PRK01368 murD UDP-N-acetylmura 61.8 33 0.00073 30.5 7.0 31 48-82 5-35 (454)
238 PRK11929 putative bifunctional 61.6 62 0.0013 31.7 9.3 91 34-126 449-571 (958)
239 PRK08249 cystathionine gamma-s 61.3 99 0.0022 27.0 9.8 111 32-145 62-209 (398)
240 PRK02458 ribose-phosphate pyro 60.9 73 0.0016 27.2 8.6 77 49-125 7-95 (323)
241 PRK08335 translation initiatio 60.8 58 0.0012 27.2 7.7 61 66-126 151-219 (275)
242 PRK02812 ribose-phosphate pyro 60.4 64 0.0014 27.6 8.2 80 46-125 16-107 (330)
243 TIGR01142 purT phosphoribosylg 60.3 23 0.0005 30.3 5.6 38 107-145 11-48 (380)
244 cd03109 DTBS Dethiobiotin synt 60.2 52 0.0011 23.8 6.8 74 52-130 3-80 (134)
245 PRK09330 cell division protein 59.9 62 0.0014 28.3 8.1 60 89-148 95-171 (384)
246 cd01019 ZnuA Zinc binding prot 59.9 1E+02 0.0022 25.6 9.2 99 13-130 130-240 (286)
247 PRK00945 acetyl-CoA decarbonyl 59.8 79 0.0017 24.4 8.1 95 40-141 25-152 (171)
248 cd01748 GATase1_IGP_Synthase T 59.4 67 0.0015 24.8 7.7 68 55-129 6-82 (198)
249 cd02771 MopB_NDH-1_NuoG2-N7 Mo 59.3 55 0.0012 29.0 8.0 104 35-141 71-195 (472)
250 PRK05968 hypothetical protein; 59.1 1.2E+02 0.0026 26.3 10.7 110 33-145 62-207 (389)
251 TIGR03736 PRTRC_ThiF PRTRC sys 59.1 72 0.0016 26.1 8.0 99 44-144 6-114 (244)
252 cd01018 ZntC Metal binding pro 58.9 54 0.0012 26.8 7.3 100 13-134 121-232 (266)
253 PRK08306 dipicolinate synthase 58.6 33 0.00072 28.7 6.1 32 48-82 151-182 (296)
254 COG0771 MurD UDP-N-acetylmuram 58.4 55 0.0012 29.3 7.6 32 49-83 7-38 (448)
255 COG1648 CysG Siroheme synthase 58.4 93 0.002 24.8 8.3 62 52-114 75-142 (210)
256 PRK02269 ribose-phosphate pyro 58.1 83 0.0018 26.7 8.5 76 50-125 4-91 (320)
257 PLN03243 haloacid dehalogenase 57.9 92 0.002 25.4 8.5 84 38-128 113-212 (260)
258 PF12682 Flavodoxin_4: Flavodo 57.9 13 0.00028 28.1 3.2 34 93-128 2-35 (156)
259 PRK05708 2-dehydropantoate 2-r 57.8 56 0.0012 27.3 7.4 41 90-130 69-109 (305)
260 COG2873 MET17 O-acetylhomoseri 57.3 1.4E+02 0.003 26.4 10.6 80 65-145 116-207 (426)
261 PRK13181 hisH imidazole glycer 57.3 49 0.0011 25.7 6.6 73 55-136 7-88 (199)
262 TIGR01470 cysG_Nterm siroheme 57.2 58 0.0013 25.7 7.0 63 51-114 71-139 (205)
263 PRK05562 precorrin-2 dehydroge 57.0 55 0.0012 26.4 6.8 61 52-113 88-154 (223)
264 PRK06176 cystathionine gamma-s 56.7 1.3E+02 0.0029 26.0 9.9 109 34-145 50-194 (380)
265 PF13685 Fe-ADH_2: Iron-contai 56.6 26 0.00055 28.8 5.0 90 39-130 7-111 (250)
266 COG1435 Tdk Thymidine kinase [ 56.5 19 0.00041 28.5 4.0 31 100-130 14-44 (201)
267 PF06057 VirJ: Bacterial virul 56.3 29 0.00064 27.3 5.0 37 91-127 1-38 (192)
268 TIGR01325 O_suc_HS_sulf O-succ 56.0 1.3E+02 0.0029 25.9 9.8 109 34-145 54-199 (380)
269 PRK07671 cystathionine beta-ly 56.0 1.3E+02 0.0029 25.9 10.1 109 34-145 50-194 (377)
270 TIGR00524 eIF-2B_rel eIF-2B al 56.0 41 0.00089 28.4 6.2 62 66-127 169-240 (303)
271 PRK07199 phosphoribosylpyropho 55.8 99 0.0021 26.0 8.5 75 52-126 3-88 (301)
272 PRK15423 hypoxanthine phosphor 55.3 95 0.0021 23.9 9.3 95 33-129 12-133 (178)
273 PRK11199 tyrA bifunctional cho 55.3 44 0.00094 29.0 6.5 81 50-135 99-184 (374)
274 PRK06522 2-dehydropantoate 2-r 55.2 91 0.002 25.5 8.2 40 90-129 65-104 (304)
275 PRK04148 hypothetical protein; 55.1 83 0.0018 23.2 9.0 77 49-130 17-114 (134)
276 PRK13143 hisH imidazole glycer 54.8 98 0.0021 24.1 7.9 74 51-129 2-82 (200)
277 COG0290 InfC Translation initi 54.7 21 0.00046 27.5 3.8 44 95-139 21-67 (176)
278 TIGR01328 met_gam_lyase methio 54.6 1.4E+02 0.0031 25.9 9.6 111 32-145 57-204 (391)
279 PRK08166 NADH dehydrogenase su 54.5 48 0.001 32.1 7.2 90 34-125 294-407 (847)
280 PRK13413 mpi multiple promoter 54.5 27 0.00059 27.2 4.7 39 89-127 59-100 (200)
281 PF00128 Alpha-amylase: Alpha 54.3 24 0.00051 28.7 4.5 54 70-123 12-70 (316)
282 COG0846 SIR2 NAD-dependent pro 53.8 8.1 0.00017 31.7 1.6 53 88-142 179-231 (250)
283 TIGR00509 bisC_fam molybdopter 53.7 69 0.0015 30.6 8.0 54 90-145 166-230 (770)
284 PRK03815 murD UDP-N-acetylmura 53.5 1.6E+02 0.0034 25.9 9.7 74 51-129 2-99 (401)
285 cd04501 SGNH_hydrolase_like_4 53.5 29 0.00062 26.1 4.6 73 51-129 31-107 (183)
286 COG1646 Predicted phosphate-bi 53.5 35 0.00076 27.7 5.1 52 92-145 43-95 (240)
287 PF09994 DUF2235: Uncharacteri 53.3 29 0.00062 28.8 4.8 39 38-76 80-118 (277)
288 PF13344 Hydrolase_6: Haloacid 53.2 17 0.00037 25.2 3.0 33 105-138 17-49 (101)
289 PRK07503 methionine gamma-lyas 52.8 1.2E+02 0.0027 26.4 9.0 111 32-144 63-209 (403)
290 PRK13141 hisH imidazole glycer 52.8 1.1E+02 0.0023 23.8 8.1 77 52-135 2-87 (205)
291 cd05797 Ribosomal_L10 Ribosoma 52.7 95 0.0021 23.1 9.4 80 36-116 6-98 (157)
292 PF00258 Flavodoxin_1: Flavodo 52.5 41 0.00089 24.2 5.2 46 57-102 7-57 (143)
293 PRK00099 rplJ 50S ribosomal pr 52.3 1E+02 0.0022 23.4 9.4 81 36-117 7-101 (172)
294 COG0041 PurE Phosphoribosylcar 52.3 1E+02 0.0022 23.4 7.4 56 52-122 6-61 (162)
295 PF09664 DUF2399: Protein of u 52.2 62 0.0013 24.4 6.1 49 35-83 26-74 (152)
296 PF02887 PK_C: Pyruvate kinase 52.2 14 0.0003 26.2 2.4 32 93-129 18-50 (117)
297 TIGR01329 cysta_beta_ly_E cyst 52.1 1.4E+02 0.0031 25.7 9.2 71 73-146 108-192 (378)
298 PRK05568 flavodoxin; Provision 52.0 40 0.00086 24.4 5.0 50 92-143 3-55 (142)
299 cd02772 MopB_NDH-1_NuoG2 MopB_ 51.9 79 0.0017 27.4 7.6 38 90-127 151-190 (414)
300 PRK00934 ribose-phosphate pyro 51.8 1.1E+02 0.0025 25.4 8.2 72 54-125 2-84 (285)
301 TIGR01161 purK phosphoribosyla 51.7 37 0.0008 28.9 5.4 38 105-143 9-46 (352)
302 TIGR01931 cysJ sulfite reducta 51.6 37 0.00081 31.5 5.7 53 51-103 61-118 (597)
303 PRK08861 cystathionine gamma-s 51.6 1.6E+02 0.0035 25.6 9.5 111 32-145 51-198 (388)
304 PF13380 CoA_binding_2: CoA bi 51.6 84 0.0018 22.2 6.5 78 50-130 1-91 (116)
305 PRK01438 murD UDP-N-acetylmura 51.4 95 0.0021 27.6 8.2 31 48-81 15-45 (480)
306 PRK06718 precorrin-2 dehydroge 51.1 1.2E+02 0.0026 23.8 8.5 32 48-82 9-40 (202)
307 PRK08247 cystathionine gamma-s 50.8 1.6E+02 0.0035 25.2 12.0 109 32-146 50-197 (366)
308 PRK00028 infC translation init 50.8 24 0.00052 27.4 3.7 46 93-139 20-68 (177)
309 PRK12359 flavodoxin FldB; Prov 50.7 1E+02 0.0022 23.6 7.2 20 53-72 7-26 (172)
310 COG0062 Uncharacterized conser 50.7 1.3E+02 0.0027 24.0 9.1 96 51-146 52-186 (203)
311 PRK06895 putative anthranilate 50.7 1.1E+02 0.0023 23.6 7.5 78 49-129 1-83 (190)
312 PRK09004 FMN-binding protein M 50.5 41 0.00089 24.9 4.9 32 93-124 4-36 (146)
313 TIGR01162 purE phosphoribosyla 50.5 1.1E+02 0.0024 23.3 7.1 56 53-123 3-58 (156)
314 cd00614 CGS_like CGS_like: Cys 50.3 1.6E+02 0.0035 25.1 9.6 110 33-145 39-185 (369)
315 COG1121 ZnuC ABC-type Mn/Zn tr 50.2 33 0.00073 28.2 4.6 41 103-145 174-214 (254)
316 KOG1159 NADP-dependent flavopr 50.2 43 0.00094 30.3 5.6 56 52-107 4-64 (574)
317 COG0608 RecJ Single-stranded D 50.0 1.9E+02 0.0042 26.0 15.3 101 32-138 19-130 (491)
318 CHL00199 infC translation init 49.6 27 0.00059 27.2 3.8 45 94-139 26-73 (182)
319 cd01410 SIRT7 SIRT7: Eukaryoti 49.6 86 0.0019 24.7 6.8 46 38-83 145-190 (206)
320 cd05567 PTS_IIB_mannitol PTS_I 49.5 75 0.0016 21.1 6.8 68 52-129 4-76 (87)
321 cd02769 MopB_DMSOR-BSOR-TMAOR 49.4 67 0.0014 29.8 7.1 54 90-145 169-234 (609)
322 PRK13018 cell division protein 49.2 1.6E+02 0.0034 25.8 8.8 55 93-147 115-185 (378)
323 PRK14075 pnk inorganic polypho 49.1 1.5E+02 0.0032 24.3 9.1 70 51-127 2-71 (256)
324 PLN02509 cystathionine beta-ly 48.9 1.6E+02 0.0034 26.5 9.1 109 34-145 133-277 (464)
325 PRK10537 voltage-gated potassi 48.7 92 0.002 27.3 7.5 77 49-130 240-341 (393)
326 cd03768 SR_ResInv Serine Recom 48.6 60 0.0013 22.8 5.4 35 91-125 54-91 (126)
327 TIGR00173 menD 2-succinyl-5-en 48.4 48 0.001 29.2 5.7 46 35-80 197-243 (432)
328 COG4090 Uncharacterized protei 48.3 1.1E+02 0.0024 22.6 8.6 88 38-127 13-125 (154)
329 PRK12921 2-dehydropantoate 2-r 48.2 1.2E+02 0.0025 25.0 7.8 38 90-127 67-104 (305)
330 cd00296 SIR2 SIR2 superfamily 48.0 83 0.0018 24.7 6.6 46 38-83 159-204 (222)
331 cd00133 PTS_IIB PTS_IIB: subun 47.6 70 0.0015 20.1 5.9 66 52-127 3-71 (84)
332 TIGR00197 yjeF_nterm yjeF N-te 47.4 1.4E+02 0.003 23.5 8.8 97 49-145 45-180 (205)
333 PRK06703 flavodoxin; Provision 47.4 32 0.0007 25.3 3.9 42 38-79 67-117 (151)
334 TIGR01326 OAH_OAS_sulfhy OAH/O 47.3 2E+02 0.0043 25.2 10.3 110 34-145 57-202 (418)
335 PRK10953 cysJ sulfite reductas 47.3 45 0.00098 31.0 5.6 53 51-103 64-121 (600)
336 PLN00196 alpha-amylase; Provis 47.0 44 0.00096 29.7 5.3 55 69-123 51-110 (428)
337 COG1136 SalX ABC-type antimicr 46.9 30 0.00064 28.0 3.8 53 91-146 160-218 (226)
338 cd02751 MopB_DMSOR-like The Mo 46.9 46 0.001 30.7 5.6 52 92-145 170-232 (609)
339 TIGR00168 infC translation ini 46.8 31 0.00068 26.4 3.8 45 94-139 9-56 (165)
340 PRK14619 NAD(P)H-dependent gly 46.7 51 0.0011 27.5 5.4 74 49-125 4-82 (308)
341 PRK11916 electron transfer fla 46.6 1.3E+02 0.0028 25.6 7.7 88 45-143 190-297 (312)
342 TIGR01753 flav_short flavodoxi 46.5 45 0.00099 23.8 4.6 48 94-143 2-52 (140)
343 PF08282 Hydrolase_3: haloacid 46.3 1.4E+02 0.003 23.1 8.1 89 35-127 16-104 (254)
344 PRK07582 cystathionine gamma-l 45.9 1.9E+02 0.0042 24.7 9.6 39 104-145 148-192 (366)
345 PRK08903 DnaA regulatory inact 45.9 1.4E+02 0.0031 23.3 8.9 80 48-127 41-130 (227)
346 cd01020 TroA_b Metal binding p 45.9 87 0.0019 25.5 6.6 35 13-47 104-138 (264)
347 PRK06019 phosphoribosylaminoim 45.8 54 0.0012 28.2 5.6 38 106-144 13-50 (372)
348 cd07038 TPP_PYR_PDC_IPDC_like 45.7 1.3E+02 0.0028 22.6 7.1 86 41-130 2-97 (162)
349 COG1432 Uncharacterized conser 45.6 56 0.0012 25.2 5.1 54 91-147 110-164 (181)
350 COG0641 AslB Arylsulfatase reg 45.3 42 0.00091 29.3 4.8 88 37-126 40-163 (378)
351 COG2379 GckA Putative glycerat 45.3 99 0.0021 27.2 6.8 50 16-71 10-60 (422)
352 PRK05723 flavodoxin; Provision 45.0 56 0.0012 24.4 4.9 32 94-125 4-36 (151)
353 COG0206 FtsZ Cell division GTP 44.8 1.1E+02 0.0023 26.4 7.0 61 88-148 92-169 (338)
354 cd01822 Lysophospholipase_L1_l 44.6 91 0.002 23.0 6.1 24 103-126 86-109 (177)
355 cd01017 AdcA Metal binding pro 44.5 1.7E+02 0.0036 24.1 8.1 99 13-130 122-232 (282)
356 COG0773 MurC UDP-N-acetylmuram 44.5 53 0.0012 29.5 5.3 77 35-113 367-456 (459)
357 PRK09435 membrane ATPase/prote 44.5 2E+02 0.0044 24.6 12.3 130 12-143 16-176 (332)
358 PRK02842 light-independent pro 44.5 1.8E+02 0.004 25.6 8.8 90 35-126 84-200 (427)
359 cd01744 GATase1_CPSase Small c 44.4 1.2E+02 0.0025 23.1 6.7 74 52-129 1-80 (178)
360 PF02590 SPOUT_MTase: Predicte 44.3 1.4E+02 0.003 22.6 11.8 87 86-192 61-153 (155)
361 TIGR01142 purT phosphoribosylg 44.3 1.2E+02 0.0026 25.8 7.5 69 51-126 1-70 (380)
362 cd00287 ribokinase_pfkB_like r 44.1 1.3E+02 0.0028 22.5 7.0 48 68-125 43-91 (196)
363 TIGR02403 trehalose_treC alpha 44.1 84 0.0018 28.8 6.7 67 56-123 22-93 (543)
364 PRK09129 NADH dehydrogenase su 43.9 1.3E+02 0.0027 28.9 8.1 93 35-127 289-408 (776)
365 cd03767 SR_Res_par Serine reco 43.8 64 0.0014 23.8 5.0 39 89-127 57-99 (146)
366 PRK07504 O-succinylhomoserine 43.8 1.8E+02 0.004 25.3 8.6 110 33-145 64-210 (398)
367 PRK12313 glycogen branching en 43.8 79 0.0017 29.5 6.6 62 62-123 171-238 (633)
368 PRK02842 light-independent pro 43.7 78 0.0017 27.9 6.3 81 38-124 151-239 (427)
369 cd01482 vWA_collagen_alphaI-XI 43.7 53 0.0011 24.4 4.7 35 92-126 104-138 (164)
370 PRK08327 acetolactate synthase 43.7 67 0.0015 29.4 6.1 68 34-101 205-289 (569)
371 PRK08674 bifunctional phosphog 43.5 2E+02 0.0044 24.3 13.5 141 15-194 167-323 (337)
372 PRK06827 phosphoribosylpyropho 43.5 2.3E+02 0.0049 24.9 9.0 76 49-125 6-129 (382)
373 PF01583 APS_kinase: Adenylyls 43.3 79 0.0017 23.9 5.5 75 50-127 3-83 (156)
374 PRK05402 glycogen branching en 43.2 85 0.0018 29.9 6.8 62 62-123 266-333 (726)
375 cd00316 Oxidoreductase_nitroge 43.1 2.1E+02 0.0046 24.5 9.0 96 49-144 81-208 (399)
376 PRK06756 flavodoxin; Provision 43.0 54 0.0012 24.0 4.6 43 38-80 68-119 (148)
377 cd01473 vWA_CTRP CTRP for CS 43.0 63 0.0014 25.0 5.1 46 92-138 109-160 (192)
378 COG1763 MobB Molybdopterin-gua 42.9 44 0.00095 25.5 4.0 33 95-127 7-39 (161)
379 COG0287 TyrA Prephenate dehydr 42.8 58 0.0013 27.1 5.1 83 49-135 3-107 (279)
380 PF05728 UPF0227: Uncharacteri 42.7 45 0.00097 26.0 4.2 68 52-124 3-87 (187)
381 TIGR00512 salvage_mtnA S-methy 42.7 1.2E+02 0.0026 26.0 7.0 60 68-127 199-268 (331)
382 PRK05333 NAD-dependent deacety 42.6 52 0.0011 27.4 4.8 54 88-143 211-264 (285)
383 PRK08338 2-oxoglutarate ferred 42.6 1E+02 0.0022 23.4 6.1 50 51-100 2-73 (170)
384 PRK10785 maltodextrin glucosid 42.5 97 0.0021 28.7 7.0 68 53-122 172-243 (598)
385 PLN02771 carbamoyl-phosphate s 42.5 1.2E+02 0.0025 27.0 7.1 74 50-129 241-321 (415)
386 PRK13566 anthranilate synthase 42.3 1.6E+02 0.0036 28.1 8.5 80 48-129 525-609 (720)
387 PRK05569 flavodoxin; Provision 42.2 49 0.0011 23.9 4.2 50 92-143 3-55 (141)
388 PRK11706 TDP-4-oxo-6-deoxy-D-g 42.2 2.2E+02 0.0048 24.3 10.6 30 93-122 121-150 (375)
389 PRK05476 S-adenosyl-L-homocyst 42.2 1.3E+02 0.0028 26.8 7.4 77 46-128 209-302 (425)
390 cd03213 ABCG_EPDR ABCG transpo 42.0 53 0.0011 25.3 4.5 41 104-145 147-187 (194)
391 PRK08273 thiamine pyrophosphat 41.8 1.8E+02 0.004 26.8 8.7 45 35-80 194-239 (597)
392 PRK09288 purT phosphoribosylgl 41.8 1.3E+02 0.0027 25.9 7.3 73 48-127 11-84 (395)
393 PRK08335 translation initiatio 41.7 2.1E+02 0.0045 23.9 9.5 38 108-147 150-187 (275)
394 PLN02361 alpha-amylase 41.5 69 0.0015 28.2 5.6 77 46-123 7-94 (401)
395 PRK06718 precorrin-2 dehydroge 41.5 1.1E+02 0.0023 24.1 6.2 60 52-113 73-138 (202)
396 TIGR03334 IOR_beta indolepyruv 41.3 1.6E+02 0.0035 22.7 7.1 63 51-117 2-86 (189)
397 cd05126 Mth938 Mth938 domain. 41.3 50 0.0011 23.7 3.9 44 39-82 48-93 (117)
398 COG0244 RplJ Ribosomal protein 41.2 1.6E+02 0.0036 22.6 9.2 81 36-117 9-102 (175)
399 TIGR01675 plant-AP plant acid 41.2 36 0.00079 27.5 3.5 30 101-130 119-148 (229)
400 cd02758 MopB_Tetrathionate-Ra 41.2 3.3E+02 0.0071 26.1 10.3 54 90-145 210-272 (735)
401 TIGR03574 selen_PSTK L-seryl-t 41.1 74 0.0016 25.5 5.4 31 52-82 2-34 (249)
402 PRK06371 translation initiatio 41.1 1.4E+02 0.003 25.6 7.1 59 68-126 189-257 (329)
403 PF02684 LpxB: Lipid-A-disacch 41.0 19 0.00041 31.4 2.0 101 38-143 13-140 (373)
404 cd01075 NAD_bind_Leu_Phe_Val_D 40.7 1.7E+02 0.0038 22.8 9.5 32 48-82 27-58 (200)
405 COG0552 FtsY Signal recognitio 40.6 1.6E+02 0.0034 25.4 7.3 74 52-126 142-229 (340)
406 TIGR00936 ahcY adenosylhomocys 40.4 1.1E+02 0.0023 27.2 6.5 75 46-126 192-283 (406)
407 PRK10444 UMP phosphatase; Prov 40.4 2E+02 0.0043 23.3 9.9 38 40-77 23-60 (248)
408 TIGR00514 accC acetyl-CoA carb 40.1 1.3E+02 0.0028 26.6 7.2 70 50-122 3-78 (449)
409 TIGR00960 3a0501s02 Type II (G 40.1 48 0.001 25.8 4.1 38 105-144 175-212 (216)
410 COG2185 Sbm Methylmalonyl-CoA 40.0 81 0.0018 23.6 4.9 74 50-123 13-96 (143)
411 cd06276 PBP1_FucR_like Ligand- 40.0 1.9E+02 0.0041 22.9 10.5 101 38-143 106-212 (247)
412 COG1707 ACT domain-containing 40.0 1.6E+02 0.0035 22.8 6.6 49 91-144 142-191 (218)
413 cd01524 RHOD_Pyr_redox Member 40.0 98 0.0021 20.3 5.1 43 38-82 40-82 (90)
414 PRK08105 flavodoxin; Provision 39.9 77 0.0017 23.5 5.0 49 94-143 5-55 (149)
415 PRK11104 hemG protoporphyrinog 39.7 1.7E+02 0.0037 22.3 8.4 75 52-127 4-87 (177)
416 PLN02821 1-hydroxy-2-methyl-2- 39.3 2.9E+02 0.0063 24.9 10.5 39 88-130 174-212 (460)
417 PRK09444 pntB pyridine nucleot 39.3 1.7E+02 0.0037 26.3 7.5 44 37-80 294-342 (462)
418 TIGR02717 AcCoA-syn-alpha acet 39.2 1.6E+02 0.0034 26.2 7.6 77 45-124 3-94 (447)
419 cd01120 RecA-like_NTPases RecA 39.1 61 0.0013 23.2 4.3 26 105-130 114-139 (165)
420 TIGR02673 FtsE cell division A 39.1 54 0.0012 25.5 4.2 38 105-144 174-211 (214)
421 CHL00073 chlN photochlorophyll 39.0 2.4E+02 0.0051 25.4 8.6 87 37-126 87-226 (457)
422 COG1184 GCD2 Translation initi 39.0 1.2E+02 0.0026 25.7 6.4 97 38-139 131-242 (301)
423 PRK11587 putative phosphatase; 38.8 1.9E+02 0.004 22.5 8.1 48 88-143 152-199 (218)
424 COG2090 Uncharacterized protei 38.7 90 0.002 23.1 4.9 38 90-127 33-70 (141)
425 cd03234 ABCG_White The White s 38.6 70 0.0015 25.2 4.9 41 104-145 179-219 (226)
426 PRK10076 pyruvate formate lyas 38.6 71 0.0015 25.4 4.8 36 106-141 55-94 (213)
427 cd01974 Nitrogenase_MoFe_beta 38.5 2.8E+02 0.006 24.5 9.0 91 34-125 72-194 (435)
428 PRK08462 biotin carboxylase; V 38.5 61 0.0013 28.6 4.9 38 106-144 15-54 (445)
429 smart00859 Semialdhyde_dh Semi 38.4 97 0.0021 21.7 5.1 38 90-127 64-101 (122)
430 PRK14089 ipid-A-disaccharide s 38.4 24 0.00052 30.4 2.2 98 38-143 16-134 (347)
431 PRK05994 O-acetylhomoserine am 38.4 2.7E+02 0.0059 24.5 8.9 109 35-145 64-208 (427)
432 PRK00561 ppnK inorganic polyph 38.4 2.3E+02 0.0049 23.4 8.1 62 51-126 2-65 (259)
433 PRK00103 rRNA large subunit me 38.3 1.7E+02 0.0038 22.1 12.6 85 88-192 63-153 (157)
434 TIGR02931 anfK_nitrog Fe-only 38.3 2.5E+02 0.0054 25.1 8.7 92 34-126 79-203 (461)
435 PRK05720 mtnA methylthioribose 38.2 1.9E+02 0.0042 24.9 7.7 60 68-127 199-268 (344)
436 TIGR02742 TrbC_Ftype type-F co 38.2 61 0.0013 23.8 4.0 36 94-130 1-36 (130)
437 cd01475 vWA_Matrilin VWA_Matri 38.2 59 0.0013 25.7 4.4 45 92-137 109-155 (224)
438 PF01918 Alba: Alba; InterPro 38.2 1E+02 0.0022 19.4 5.7 38 34-71 10-56 (70)
439 PF14824 Sirohm_synth_M: Siroh 38.1 64 0.0014 17.4 3.0 23 91-113 2-24 (30)
440 PRK03562 glutathione-regulated 37.9 1.7E+02 0.0037 27.3 7.8 76 49-130 400-503 (621)
441 TIGR03772 anch_rpt_subst ancho 37.9 1.5E+02 0.0034 26.8 7.3 99 13-130 320-432 (479)
442 PF12724 Flavodoxin_5: Flavodo 37.8 1.6E+02 0.0034 21.4 8.6 75 52-127 3-84 (143)
443 PRK14476 nitrogenase molybdenu 37.8 2.9E+02 0.0064 24.6 9.1 92 34-126 79-203 (455)
444 PRK10499 PTS system N,N'-diace 37.8 1.4E+02 0.0031 20.8 7.6 74 51-130 6-85 (106)
445 COG0462 PrsA Phosphoribosylpyr 37.8 2.6E+02 0.0056 23.9 8.6 76 50-125 3-89 (314)
446 TIGR00333 nrdI ribonucleoside- 37.6 50 0.0011 24.0 3.5 42 95-145 1-44 (125)
447 cd01453 vWA_transcription_fact 37.6 74 0.0016 24.4 4.7 46 92-138 108-156 (183)
448 cd01979 Pchlide_reductase_N Pc 37.5 2.8E+02 0.006 24.1 10.4 88 35-125 75-187 (396)
449 PRK05772 translation initiatio 37.5 1.2E+02 0.0025 26.5 6.2 59 68-126 220-288 (363)
450 PRK03363 fixB putative electro 37.4 2.2E+02 0.0047 24.2 7.8 90 46-143 192-298 (313)
451 cd00423 Pterin_binding Pterin 37.3 2.3E+02 0.0049 23.1 7.7 93 34-128 22-130 (258)
452 PRK14031 glutamate dehydrogena 37.2 3.1E+02 0.0067 24.6 9.1 83 48-147 227-321 (444)
453 TIGR00246 tRNA_RlmH_YbeA rRNA 37.2 1.8E+02 0.0039 21.9 11.8 81 92-192 65-150 (153)
454 PRK13152 hisH imidazole glycer 37.1 1.7E+02 0.0038 22.6 6.8 68 55-129 7-84 (201)
455 cd01137 PsaA Metal binding pro 37.1 2.4E+02 0.0052 23.3 8.4 99 13-130 126-238 (287)
456 PRK10669 putative cation:proto 37.0 1.1E+02 0.0025 27.9 6.5 31 49-82 417-447 (558)
457 PRK08727 hypothetical protein; 36.9 1.4E+02 0.003 23.8 6.4 81 50-130 42-138 (233)
458 PRK13146 hisH imidazole glycer 36.8 2.1E+02 0.0045 22.5 7.8 74 51-129 3-88 (209)
459 TIGR01465 cobM_cbiF precorrin- 36.7 2.1E+02 0.0045 22.5 10.3 93 35-127 57-164 (229)
460 PRK06234 methionine gamma-lyas 36.7 2.8E+02 0.0062 24.1 9.4 111 33-145 63-211 (400)
461 PRK09310 aroDE bifunctional 3- 36.7 1.5E+02 0.0032 26.7 7.1 31 49-82 332-362 (477)
462 TIGR01357 aroB 3-dehydroquinat 36.7 2.6E+02 0.0057 23.7 9.3 88 38-126 9-115 (344)
463 TIGR01437 selA_rel uncharacter 36.4 2.7E+02 0.0059 23.7 9.9 43 101-145 162-208 (363)
464 PLN02256 arogenate dehydrogena 36.3 1.6E+02 0.0035 24.7 6.8 100 27-130 15-132 (304)
465 PRK08229 2-dehydropantoate 2-r 36.3 2.6E+02 0.0056 23.4 8.4 41 89-129 71-111 (341)
466 PRK10310 PTS system galactitol 36.3 86 0.0019 21.3 4.4 32 51-82 5-38 (94)
467 COG0561 Cof Predicted hydrolas 36.2 52 0.0011 26.5 3.8 32 103-135 21-52 (264)
468 cd01407 SIR2-fam SIR2 family o 36.2 2E+02 0.0044 22.7 7.1 46 38-83 157-202 (218)
469 PF02811 PHP: PHP domain; Int 36.2 27 0.00059 25.8 2.0 23 106-128 17-39 (175)
470 PRK09288 purT phosphoribosylgl 36.2 1.3E+02 0.0028 25.9 6.5 38 106-144 23-60 (395)
471 COG1697 DNA topoisomerase VI, 36.2 2E+02 0.0044 24.9 7.3 85 38-127 194-281 (356)
472 PRK01259 ribose-phosphate pyro 36.2 2.1E+02 0.0046 24.1 7.5 72 54-125 3-86 (309)
473 PF03205 MobB: Molybdopterin g 36.0 41 0.00089 24.8 2.9 36 94-129 4-39 (140)
474 PRK10637 cysG siroheme synthas 36.0 1.4E+02 0.0031 26.6 6.8 61 51-112 74-140 (457)
475 COG0803 LraI ABC-type metal io 35.9 2.3E+02 0.0051 23.7 7.8 102 12-133 141-255 (303)
476 PF12500 TRSP: TRSP domain C t 35.6 2E+02 0.0042 21.9 6.6 47 35-81 40-89 (155)
477 cd01016 TroA Metal binding pro 35.5 2.5E+02 0.0054 23.1 8.3 99 13-130 110-222 (276)
478 PRK10530 pyridoxal phosphate ( 35.5 2.3E+02 0.005 22.6 9.3 83 38-125 24-108 (272)
479 PRK05333 NAD-dependent deacety 35.5 1.5E+02 0.0033 24.6 6.5 71 37-111 203-273 (285)
480 PF02698 DUF218: DUF218 domain 35.4 1.8E+02 0.0038 21.2 7.2 82 35-130 22-110 (155)
481 TIGR01768 GGGP-family geranylg 35.4 1.2E+02 0.0025 24.5 5.6 50 93-144 29-79 (223)
482 PF00731 AIRC: AIR carboxylase 35.3 1.6E+02 0.0035 22.2 6.0 61 52-127 4-65 (150)
483 cd01427 HAD_like Haloacid deha 35.3 45 0.00098 22.8 3.0 33 102-135 24-56 (139)
484 PF03807 F420_oxidored: NADP o 35.2 46 0.00099 22.1 2.9 36 90-126 60-95 (96)
485 PRK12564 carbamoyl phosphate s 35.1 2.4E+02 0.0052 24.5 7.8 74 50-128 178-258 (360)
486 cd03232 ABC_PDR_domain2 The pl 35.1 77 0.0017 24.3 4.5 40 105-145 145-184 (192)
487 cd04906 ACT_ThrD-I_1 First of 35.0 81 0.0017 20.8 4.0 39 90-128 38-76 (85)
488 cd03262 ABC_HisP_GlnQ_permease 35.0 64 0.0014 25.0 4.1 38 105-144 172-209 (213)
489 COG2130 Putative NADP-dependen 35.0 73 0.0016 27.2 4.4 41 87-129 146-186 (340)
490 PF14258 DUF4350: Domain of un 35.0 1.2E+02 0.0025 19.1 7.3 58 67-124 10-69 (70)
491 COG0243 BisC Anaerobic dehydro 35.0 1.5E+02 0.0033 28.2 7.2 54 89-144 197-255 (765)
492 COG0028 IlvB Thiamine pyrophos 34.9 2E+02 0.0044 26.4 7.7 89 38-130 4-102 (550)
493 PF02776 TPP_enzyme_N: Thiamin 34.9 39 0.00086 25.5 2.7 89 39-130 4-102 (172)
494 TIGR01125 MiaB-like tRNA modif 34.8 1.7E+02 0.0036 25.8 7.0 71 52-130 4-77 (430)
495 cd02757 MopB_Arsenate-R This C 34.8 3.5E+02 0.0076 24.5 10.2 28 119-147 386-413 (523)
496 cd08169 DHQ-like Dehydroquinat 34.8 2.9E+02 0.0063 23.6 9.5 88 38-126 10-117 (344)
497 PRK12581 oxaloacetate decarbox 34.7 1.9E+02 0.0042 26.1 7.3 97 33-130 69-188 (468)
498 PLN00022 electron transfer fla 34.7 1.9E+02 0.0042 25.1 7.1 88 45-143 233-339 (356)
499 cd04907 ACT_ThrD-I_2 Second of 34.7 70 0.0015 21.2 3.6 37 90-128 39-75 (81)
500 PF02254 TrkA_N: TrkA-N domain 34.7 1.5E+02 0.0033 20.2 7.2 40 88-129 59-100 (116)
No 1
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=100.00 E-value=1.9e-33 Score=219.06 Aligned_cols=177 Identities=34% Similarity=0.563 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcE
Q 028777 15 QICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDL 94 (204)
Q Consensus 15 ~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~Dl 94 (204)
+..+.+.++++.++.+ +++++++.|.++++|+++|.|.|+.+|+++.++|.++|+++....|.....++++|+
T Consensus 3 ~~~~~l~~t~~~l~~~-------~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv 75 (179)
T TIGR03127 3 LILDEISQVASRIDEE-------ELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDL 75 (179)
T ss_pred HHHHHHHHHHHhCCHH-------HHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCE
Confidence 5678899999999988 999999999999999999999999999999999999999999998866678999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHH
Q 028777 95 LIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAM 174 (204)
Q Consensus 95 vI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 174 (204)
+|++|.||++++++++++.||++|++||+||++++| |++++||++|.++..+...... ...+..|+.+.+....
T Consensus 76 ~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s-~la~~ad~~l~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~ 149 (179)
T TIGR03127 76 LIAISGSGETESLVTVAKKAKEIGATVAAITTNPES-TLGKLADVVVEIPAATKKDSEG-----NYKSIQPLGSLFEQSL 149 (179)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC-chHHhCCEEEEeCCccccCCCC-----CccccCcCchHHHHHH
Confidence 999999999999999999999999999999999999 9999999999998765543210 1112456777665677
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHhhcCCCC
Q 028777 175 FVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204 (204)
Q Consensus 175 ~~~ld~L~~~l~~~~g~~~~~~~~~~~~~~ 204 (204)
++++|+|+..++.+++.+.++++++|||+|
T Consensus 150 l~ild~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (179)
T TIGR03127 150 LLFLDAVILKLMKKKGLDEEEMKKRHANLE 179 (179)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHhccCC
Confidence 899999999999999999999999999998
No 2
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=100.00 E-value=1.6e-31 Score=208.25 Aligned_cols=178 Identities=36% Similarity=0.590 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCC
Q 028777 11 SLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPIS 90 (204)
Q Consensus 11 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~ 90 (204)
+++++..++++++++.++.+ .++++++.|.++++|+++|.|.|..+|+++.++|.++|+++....|.....++
T Consensus 2 ~~~~~~~~~l~~t~~~l~~~-------~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~ 74 (179)
T cd05005 2 EYLSLILEEIENVADKIDEE-------ELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIG 74 (179)
T ss_pred cHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCC
Confidence 35678899999999999998 99999999999999999999999999999999999999999999886667889
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHH
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVY 170 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 170 (204)
++|++|+||.||++++++++++.||++|+++|+||+++++ |++++||++|.+++.+...... ...+..|+.+.+
T Consensus 75 ~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s-~la~~ad~~l~~~~~~~~~~~~-----~~~~~~~~~~~~ 148 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDS-PLAKLADVVVVIPAATKDDHGG-----EHKSIQPLGTLF 148 (179)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC-chHHhCCEEEEeCCcccccCCC-----CccccccCccHH
Confidence 9999999999999999999999999999999999999999 9999999999998866543210 111235666666
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHhhcC
Q 028777 171 EGAMFVLFEMVVYKLGEALGQSPEAVRSRHT 201 (204)
Q Consensus 171 ~~~~~~~ld~L~~~l~~~~g~~~~~~~~~~~ 201 (204)
....++++|+|+..+++..+..++++..||.
T Consensus 149 ~~~~l~~ld~l~~~~~~~~~~~~~~~~~~~~ 179 (179)
T cd05005 149 EQSALVFLDAVIAKLMEELGVSEEEMKKRHA 179 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHhcC
Confidence 5678999999999999999999999999994
No 3
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.96 E-value=5.6e-28 Score=200.70 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC----
Q 028777 8 SMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD---- 83 (204)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d---- 83 (204)
..+++++...+.++.+.+.++++ .++++++.|.+|++|+++|.|.|+.+|.|+.++|.++|+++..++|
T Consensus 96 ~~~~~~~~~~~~l~~t~~~l~~~-------~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~ 168 (281)
T COG1737 96 ILEKLLAANIAALERTLNLLDEE-------ALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQ 168 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHH
Confidence 57889999999999999999998 9999999999999999999999999999999999999999999998
Q ss_pred -CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCC
Q 028777 84 -MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRP 162 (204)
Q Consensus 84 -~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~ 162 (204)
+....++++|++|+||+||++++++++++.||++|++||+||++..| ||++.||++|.++....... .
T Consensus 169 ~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~s-pla~~Ad~~L~~~~~~~~~~----------~ 237 (281)
T COG1737 169 LMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADS-PLAKLADIVLLVPVAEESFF----------R 237 (281)
T ss_pred HHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCC-chhhhhceEEeccCccccch----------h
Confidence 34568899999999999999999999999999999999999999999 99999999999976543211 1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhCCChHHHHh
Q 028777 163 LMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRS 198 (204)
Q Consensus 163 ~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~~~~~~ 198 (204)
.|+++. .+.++++|+|+..+..+.+....+..+
T Consensus 238 -~~~~s~--~a~l~l~d~L~~~~~~~~~~~~~~~~~ 270 (281)
T COG1737 238 -SPISSR--IAQLALIDALITAVAQRRGEAALKRLK 270 (281)
T ss_pred -hhHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 133332 367899999999999999887655444
No 4
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3.8e-27 Score=183.74 Aligned_cols=176 Identities=26% Similarity=0.323 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec----
Q 028777 8 SMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQ-KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF---- 82 (204)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~-a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~---- 82 (204)
..++++....+.+.+..+.++++ .+.++++.|.+ .+||+++|.|.|+++|+.|+.+|.++|.++++++
T Consensus 4 ~a~~i~~~~~~~l~~~~~~~~~~-------~~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea 76 (202)
T COG0794 4 IAKEILMTEAEALLELAERLDDE-------DFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEA 76 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCchh
Confidence 34567777777888888888865 88888888775 8999999999999999999999999999999998
Q ss_pred -CCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCC
Q 028777 83 -DMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSR 161 (204)
Q Consensus 83 -d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~ 161 (204)
+...+.++++|++|+||.||+|.++..++.++|+.|+++|+||++++| +|++.||+++.+|..++.. ..
T Consensus 77 ~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~S-sLak~aDvvl~ip~~~e~~---------p~ 146 (202)
T COG0794 77 LHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDS-SLAKAADVVLVIPVKTEAC---------PL 146 (202)
T ss_pred ccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCC-hHHHhcCeEEEccCccccC---------cc
Confidence 467788999999999999999999999999999999999999999999 9999999999999877642 12
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhcCC
Q 028777 162 PLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTN 202 (204)
Q Consensus 162 ~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~~~~~~~~~~ 202 (204)
...|..+. ...+..-|++...+++.++.+++++...||.
T Consensus 147 ~l~pt~st--~~~l~~gdal~~~L~e~~~f~~~D~~~~hp~ 185 (202)
T COG0794 147 GLAPTTST--TLTLALGDALAGTLFEARGFSFEDFAIAHPG 185 (202)
T ss_pred cCCcchhh--HHHHhhccHHHHHHHHHhCCCHHHHHHhCch
Confidence 23444332 2456677777777777777777777777763
No 5
>PRK15482 transcriptional regulator MurR; Provisional
Probab=99.95 E-value=1.6e-26 Score=192.46 Aligned_cols=167 Identities=14% Similarity=0.116 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-----CC
Q 028777 11 SLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-----MT 85 (204)
Q Consensus 11 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-----~~ 85 (204)
.+.+...+.++++++.++.+ .++++++.|.+|++||++|.|.|+.+|++|.++|.++|+++....| ..
T Consensus 104 ~~~~~~~~~i~~t~~~id~~-------~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~ 176 (285)
T PRK15482 104 KLNREKELALEQTCALFDYA-------RLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATV 176 (285)
T ss_pred HHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHH
Confidence 34444567789999999988 9999999999999999999999999999999999999999998766 23
Q ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccc
Q 028777 86 TPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMP 165 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
...++++|++|+||+||++++++++++.|+++|+++|+||+.++| |++++||++|.++...... ...+
T Consensus 177 ~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s-~la~~ad~~l~~~~~~~~~-----------~~~~ 244 (285)
T PRK15482 177 SQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADS-PLRRLAHFTLDTVSGETEW-----------RSSS 244 (285)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC-chHHhCCEEEEcCCCccch-----------hHHH
Confidence 456889999999999999999999999999999999999999999 9999999999998754321 1122
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCChHHHHh
Q 028777 166 MGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRS 198 (204)
Q Consensus 166 ~~s~~~~~~~~~ld~L~~~l~~~~g~~~~~~~~ 198 (204)
+++. .+.++++|+|+..++.+.+........
T Consensus 245 ~ss~--~~~~~~id~L~~~~~~~~~~~~~~~~~ 275 (285)
T PRK15482 245 MSTR--TAQNSVTDLLFVGLVQLNDVESLKMIQ 275 (285)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3333 357899999999999998877544433
No 6
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.95 E-value=5.6e-26 Score=191.93 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCC-cEEEEecchhHHHHHHHHHHHhhcCCeEEEecC----
Q 028777 9 MSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKG-SVFLYGVGREGLMLKALCMRLAHLGISTHLVFD---- 83 (204)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d---- 83 (204)
....+..++++..++++.++ + .+.++++.+.+++ +|++||.|.|..+|++++++|.++|+++..+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~-~-------~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~ 80 (321)
T PRK11543 9 GRQTLMLELQEASRLPERLG-D-------DFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEAL 80 (321)
T ss_pred HHHHHHHHHHHHHHHHHhcc-H-------HHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHh
Confidence 34455667788888888887 3 7889999998874 999999999999999999999999999998876
Q ss_pred -CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCC
Q 028777 84 -MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRP 162 (204)
Q Consensus 84 -~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~ 162 (204)
.....++++|++|+||+||++++++++++.||++|+++|+||++++| ||+++||++|.++...... ...
T Consensus 81 ~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s-~la~~ad~~l~~~~~~~~~---------~~~ 150 (321)
T PRK11543 81 HGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTS-PLGLAAKAVLDISVEREAC---------PMH 150 (321)
T ss_pred hCCcCccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCC-hhHHhCCEEEEcCCccccC---------CCC
Confidence 34467899999999999999999999999999999999999999999 9999999999987643210 011
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhcCC
Q 028777 163 LMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTN 202 (204)
Q Consensus 163 ~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~~~~~~~~~~ 202 (204)
..+.++ ....++++|.|+..++.+.|...+++.++||.
T Consensus 151 ~~~~ss--~~~~~~~~dsL~~~~l~~~g~~~~~~~~~~~~ 188 (321)
T PRK11543 151 LAPTSS--TVNTLMMGDALAMAVMQARGFNEEDFARSHPA 188 (321)
T ss_pred CCcHHH--HHHHHHHHHHHHHHHHHHcCCCHHHhccCCCC
Confidence 233333 24578899999999999999999999999986
No 7
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=99.94 E-value=3.3e-26 Score=189.78 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-----
Q 028777 9 MSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD----- 83 (204)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d----- 83 (204)
.+++++...+.++++++.++.+ .++++++.|.++++||++|.|.|..+|++|.++|.++|+++....|
T Consensus 95 ~~~~~~~~~~~l~~t~~~~~~~-------~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~ 167 (278)
T PRK11557 95 GEKLIKENTAAMRATLDVNSEE-------KLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALL 167 (278)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHH
Confidence 4567778888999999999988 9999999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCc
Q 028777 84 MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPL 163 (204)
Q Consensus 84 ~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (204)
.....++++|++|+||++|++++++++++.||++|++||+||+++++ |++++||++|.++...... ..
T Consensus 168 ~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s-~la~~ad~~l~~~~~~~~~-----------~~ 235 (278)
T PRK11557 168 ATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPN-ALQQRASHCLYTIAEEQAT-----------RS 235 (278)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCC-chHHhCCEEEEeCCCCccc-----------ch
Confidence 23346899999999999999999999999999999999999999999 9999999999886643321 11
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHhCCChHH
Q 028777 164 MPMGSVYEGAMFVLFEMVVYKLGEALGQSPEA 195 (204)
Q Consensus 164 ~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~~~ 195 (204)
.+..+. .+.++++|+|+..++.+.+.+..+
T Consensus 236 ~~~~s~--~~~~~l~d~L~~~~~~~~~~~~~~ 265 (278)
T PRK11557 236 AAISST--HAQGMLTDLLFMALIQQDLERAPE 265 (278)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 223333 357899999999999998876533
No 8
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.94 E-value=1.6e-25 Score=186.95 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC---
Q 028777 7 SSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD--- 83 (204)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d--- 83 (204)
..++++.+...+.+.++.+.++.+ .+++++++|.++++|+++|.|.|..+|++|+++|.++|+++..+.|
T Consensus 105 ~~~~~~~~~~~~~i~~t~~~l~~~-------~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~ 177 (292)
T PRK11337 105 DVVNKVFNTSLQAIEETQSILDVD-------EFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHI 177 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHH
Confidence 345666777788999999999988 9999999999999999999999999999999999999999998877
Q ss_pred --CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCC
Q 028777 84 --MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSR 161 (204)
Q Consensus 84 --~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~ 161 (204)
.....++++|++|+||.||++++++++++.||++|+++|+||+++++ |++++||++|.++........
T Consensus 178 ~~~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s-~la~~ad~~l~~~~~~~~~~~--------- 247 (292)
T PRK11337 178 MLMSAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHS-PIAKLADYVICSTAQGSPLLG--------- 247 (292)
T ss_pred HHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC-hhHHhCCEEEEcCCCCccccc---------
Confidence 22356899999999999999999999999999999999999999999 999999999999865432110
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHhCCCh
Q 028777 162 PLMPMGSVYEGAMFVLFEMVVYKLGEALGQSP 193 (204)
Q Consensus 162 ~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~ 193 (204)
.+..+ ..+.++++|+|+..++.+..+..
T Consensus 248 --~~~~s--~~~~~~i~d~L~~~l~~~~~~~~ 275 (292)
T PRK11337 248 --ENAAA--RIAQLNILDAFFVSVAQLNIEQA 275 (292)
T ss_pred --chHHH--HHHHHHHHHHHHHHHHHHhhHHH
Confidence 12222 23578999999999999987654
No 9
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.94 E-value=8.3e-25 Score=185.23 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=149.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC-CcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC--
Q 028777 7 SSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQK-GSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-- 83 (204)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a-~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-- 83 (204)
...+++...+.+.++++.+.++. .++++++.+.++ ++|++||.|.|+.+|++++++|.++|+++....+
T Consensus 12 ~~~~~~~~~~~~~~~~t~~~~~~--------~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~ 83 (326)
T PRK10892 12 QAGKEVLAIEREGLAELDQYINQ--------DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGE 83 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHH
Confidence 34567777888889999888884 699999999887 7999999999999999999999999999998754
Q ss_pred ---CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCC
Q 028777 84 ---MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKS 160 (204)
Q Consensus 84 ---~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~ 160 (204)
.....++++|++|++|.||++++++++++.||++|++||+||++++| |++++||+.|.+++.+... .
T Consensus 84 ~~~~~~~~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s-~la~~ad~~l~~~~~~~~~---------~ 153 (326)
T PRK10892 84 AAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPES-SMARAADIHLCVKVPKEAC---------P 153 (326)
T ss_pred hhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCC-cccccCCEEEEeCCCcccC---------C
Confidence 23467889999999999999999999999999999999999999999 9999999999997654311 0
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhcCC
Q 028777 161 RPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTN 202 (204)
Q Consensus 161 ~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~~~~~~~~~~ 202 (204)
....++.+. .+.+++.|.++..++.+.|.+.+++...|+.
T Consensus 154 ~~~~~~~s~--ia~~~~~dsL~~~~l~~~g~~~~~~~~~~~~ 193 (326)
T PRK10892 154 LGLAPTSST--TATLVMGDALAVALLKARGFTAEDFALSHPG 193 (326)
T ss_pred CCCCchHHH--HHHHHHHHHHHHHHHHHhCCCHHHHHhcCCC
Confidence 112333333 4678999999999999999999888888764
No 10
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=99.93 E-value=1.2e-24 Score=180.70 Aligned_cols=164 Identities=13% Similarity=0.166 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCC---
Q 028777 8 SMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDM--- 84 (204)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~--- 84 (204)
...++++...+.++++.+.++.+ .++++++.|.++++|+++|.|.|..+|.+++++|.++|+++...++.
T Consensus 94 ~~~~~~~~~~~~l~~t~~~id~~-------~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~ 166 (284)
T PRK11302 94 YTGKIFESAMASLDHARQSLDPS-------AINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDDIVMQ 166 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhcCCceEecCCHHHH
Confidence 35567788888999999999988 99999999999999999999999999999999999999999988872
Q ss_pred --CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCC
Q 028777 85 --TTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRP 162 (204)
Q Consensus 85 --~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~ 162 (204)
....++++|++|+||.||++++++++++.||++|++||+||+ +++ |++++||++|.++..... ..
T Consensus 167 ~~~~~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s-~l~~~ad~~l~~~~~~~~-----------~~ 233 (284)
T PRK11302 167 RMSCMNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITS-AGS-PLAREATLALTLDVPEDT-----------DI 233 (284)
T ss_pred HHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCC-hhHHhCCEEEecCCCccc-----------hh
Confidence 224678999999999999999999999999999999999997 789 999999999998753221 11
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhCCCh
Q 028777 163 LMPMGSVYEGAMFVLFEMVVYKLGEALGQSP 193 (204)
Q Consensus 163 ~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~ 193 (204)
..|+.+. .+.++++|+|+..++.+.|...
T Consensus 234 ~~~~~s~--~~~~~l~d~L~~~l~~~~~~~~ 262 (284)
T PRK11302 234 YMPMVSR--IAQLTVIDVLATGFTLRRGAKF 262 (284)
T ss_pred cchHHHH--HHHHHHHHHHHHHHHHHhhHHH
Confidence 2243332 4578899999999999998753
No 11
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.90 E-value=7.1e-23 Score=187.25 Aligned_cols=166 Identities=14% Similarity=0.184 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC----
Q 028777 8 SMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD---- 83 (204)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d---- 83 (204)
.+.++++...+.+.++.+.++.+ .++++++.|.++++||++|.|.|..+|++++++|.++|+++....|
T Consensus 434 ~~~~~~~~~~~~i~~t~~~id~~-------~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~ 506 (638)
T PRK14101 434 FGAKVLDNTVSAILQLREHLNFE-------HVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQ 506 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHH
Confidence 45677788888999999999988 9999999999999999999999999999999999999999998877
Q ss_pred -CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCC
Q 028777 84 -MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRP 162 (204)
Q Consensus 84 -~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~ 162 (204)
.....++++|++|+||+||++++++++++.||++|++||+||+. +| |++++||++|.++..... .+
T Consensus 507 ~~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~-~s-pLa~~aD~~L~~~~~~~~-----------~s 573 (638)
T PRK14101 507 AASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSS-NT-PLAKRATVALETDHIEMR-----------ES 573 (638)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCC-CC-hhHhhCCEEEEcCCccch-----------hc
Confidence 12356899999999999999999999999999999999999984 88 999999999987653221 23
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHh---CCChHH
Q 028777 163 LMPMGSVYEGAMFVLFEMVVYKLGEAL---GQSPEA 195 (204)
Q Consensus 163 ~~~~~s~~~~~~~~~ld~L~~~l~~~~---g~~~~~ 195 (204)
..++.+. .+.++++|+|+..++.+. ++....
T Consensus 574 ~~~~~s~--~~~l~lid~L~~~l~~~~~~~~~~~~~ 607 (638)
T PRK14101 574 QLSMISR--ILHLVMIDILAVGVAIRRAAPNAELAE 607 (638)
T ss_pred cccHHHH--HHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3444433 357889999999999999 554433
No 12
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.90 E-value=1.3e-22 Score=167.16 Aligned_cols=141 Identities=20% Similarity=0.258 Sum_probs=121.2
Q ss_pred CcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-----CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEE
Q 028777 50 GSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLL 124 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~i 124 (204)
+|||+||.|.|..+|++|+++|.++|+++..+.+ .....++++|++|++|.||++++++++++.||++|+++|+|
T Consensus 1 ~rI~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~i 80 (268)
T TIGR00393 1 GKLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAF 80 (268)
T ss_pred CcEEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEE
Confidence 5899999999999999999999999999998876 23356899999999999999999999999999999999999
Q ss_pred ecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhCCChHHHHhhcCC
Q 028777 125 TAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTN 202 (204)
Q Consensus 125 T~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~~~~~~~~~~ 202 (204)
|+.+++ |++++||+.|.+++...... ....+..+. ...++++|+|+..++.+.|..+.++.+.||.
T Consensus 81 T~~~~s-~l~~~~d~~l~~~~~~~~~~---------~~~~~~~s~--~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~ 146 (268)
T TIGR00393 81 TGSPNS-SLARAADYVLDIKVEKEACP---------INLAPTTST--TLTLALGDALAVALMRARNFSQEDFASFHPG 146 (268)
T ss_pred ECCCCC-cccccCCEEEEcCCCcccCC---------CCCccHHHH--HHHHHHHHHHHHHHHHHHCcCHHHHhhcCCC
Confidence 999999 99999999999976432111 112233332 4678999999999999999999999999983
No 13
>PRK02947 hypothetical protein; Provisional
Probab=99.90 E-value=5.8e-23 Score=167.54 Aligned_cols=185 Identities=14% Similarity=0.190 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHH------hhcCCeEEE-
Q 028777 8 SMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRL------AHLGISTHL- 80 (204)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l------~~lg~~~~~- 80 (204)
.++++++...+.++++.+. .. +.+++.++.+++.|.++++|++||.|.|..+|.+|.++| .+++.++..
T Consensus 3 ~~~~~~~~~~~~l~~i~~~-~~---e~i~~aa~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~ 78 (246)
T PRK02947 3 MIDEYFDAVIELLERVRET-QA---EAIEKAADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLML 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-hH---HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhc
Confidence 4556666666666666666 33 467778888888889999999999999999999999998 344444321
Q ss_pred ------------ecC-----CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCC-----------Ccc
Q 028777 81 ------------VFD-----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPE-----------SGS 132 (204)
Q Consensus 81 ------------~~d-----~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~-----------s~~ 132 (204)
..+ .....++++|++|+||+||++++++++++.|+++|+++|+||+.++ + |
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs-~ 157 (246)
T PRK02947 79 HEGAVASSYLERVEGYAKAILDRYDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGK-R 157 (246)
T ss_pred cccHHHHHHhhhcccHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcC-c
Confidence 111 1346789999999999999999999999999999999999999984 7 9
Q ss_pred hhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHH---HhCCChHHHH-hhcCC
Q 028777 133 SVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGE---ALGQSPEAVR-SRHTN 202 (204)
Q Consensus 133 l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~---~~g~~~~~~~-~~~~~ 202 (204)
|++.||++|.++....... ....+......|.++ .+.++++|+|+..+++ ..|.++.+|. .+||.
T Consensus 158 l~~~ad~~l~~~~~~~~~~--v~~e~~~~~~~~~s~---~~~~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 226 (246)
T PRK02947 158 LAEVADVVLDNGAPKGDAV--LEIPGLEAPVGPVST---VVGAAILNAIFAEVAERLVERGITPPVFLSANVDG 226 (246)
T ss_pred hhHhCCEEEEcCCCCCCeE--EEeCCCCCCcCcHhH---HHHHHHHHHHHHHHHHHHHHCCCCCCeeecCCCCC
Confidence 9999999998876432000 000001122233332 3567888988666654 5588899888 56653
No 14
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=99.90 E-value=2.4e-22 Score=147.99 Aligned_cols=122 Identities=23% Similarity=0.352 Sum_probs=102.8
Q ss_pred CcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-----CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEE
Q 028777 50 GSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLL 124 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~i 124 (204)
+||+++|.|.|..+|+++.++|.++|+++....+ .....++++|++|++|.||++++++++++.||++|+++|+|
T Consensus 1 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~i 80 (128)
T cd05014 1 GKVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAI 80 (128)
T ss_pred CeEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEE
Confidence 5799999999999999999999999999998865 23356789999999999999999999999999999999999
Q ss_pred ecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHH
Q 028777 125 TAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVY 183 (204)
Q Consensus 125 T~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~ 183 (204)
|+++++ |+++.||++|.++..+.... .+..+..+. ..+++++|+|+.
T Consensus 81 T~~~~s-~la~~ad~~l~~~~~~~~~~---------~~~~~~~s~--~~~~~~~d~l~~ 127 (128)
T cd05014 81 TGNPNS-TLAKLSDVVLDLPVEEEACP---------LGLAPTTST--TAMLALGDALAV 127 (128)
T ss_pred eCCCCC-chhhhCCEEEECCCCccccc---------CCCCchHHH--HHHHHHHHHHhh
Confidence 999999 99999999999987544211 122333332 457899999985
No 15
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=99.89 E-value=6.5e-22 Score=153.88 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=100.0
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh------hcCCeEEEecC-C---------
Q 028777 21 ASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA------HLGISTHLVFD-M--------- 84 (204)
Q Consensus 21 ~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~------~lg~~~~~~~d-~--------- 84 (204)
......++.+ .+++.++.+++.+.++++|+++|.|.|..+|++|.++|. ++|+++..+.+ .
T Consensus 8 ~~~~~~~~~~---~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 84 (177)
T cd05006 8 KEALLELLAE---AIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIAND 84 (177)
T ss_pred HHHHHHhhHH---HHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhcc
Confidence 3333444554 444455555555566999999999999999999999886 35888888772 0
Q ss_pred ----------CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 85 ----------TTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 85 ----------~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
....++++|++|+||.||++++++++++.||++|+++|+||+++++ ||+++||++|.++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s-~La~~aD~~l~~~~~~ 156 (177)
T cd05006 85 YGYEEVFSRQVEALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGG-KLLELADIEIHVPSDD 156 (177)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC-chhhhCCEEEEeCCCC
Confidence 1135799999999999999999999999999999999999999999 9999999999998643
No 16
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=99.88 E-value=9.8e-22 Score=154.72 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHH------HHHhhcCCeEEEecCC-------------------CCCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALC------MRLAHLGISTHLVFDM-------------------TTPP 88 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~------~~l~~lg~~~~~~~d~-------------------~~~~ 88 (204)
.+++.++.+.+.+.++++|++||.|.|+.+|++++ +++.++|+++....|. ....
T Consensus 29 ~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~ 108 (192)
T PRK00414 29 AIQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEAV 108 (192)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEecCcHHHHhhhhccCCHHHHHHHHHHHh
Confidence 33444444444444559999999999999999998 5566899999887762 1234
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
.+++|++|+||.||++++++++++.||++|+++|+||+++++ |++++||++|.++...
T Consensus 109 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s-~l~~~ad~~l~~~~~~ 166 (192)
T PRK00414 109 GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGG-KMAGLADIEIRVPHFG 166 (192)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC-hhHHhCCEEEEeCCCC
Confidence 689999999999999999999999999999999999999999 9999999999998743
No 17
>PRK13937 phosphoheptose isomerase; Provisional
Probab=99.88 E-value=9.9e-22 Score=154.30 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHH------HHHhhcCCeEEEec-----------C---------CCC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALC------MRLAHLGISTHLVF-----------D---------MTT 86 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~------~~l~~lg~~~~~~~-----------d---------~~~ 86 (204)
+.+.+.++++++.+.+++||++||.|.|+.+|+++. +++.+.|+++.... | +..
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~ 101 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVE 101 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHH
Confidence 467889999999999999999999999999887753 34467899888763 1 022
Q ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 87 PPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 87 ~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
..++++|++|++|.||+|++++++++.||++|+++|+||+++++ |++++||++|.++...
T Consensus 102 ~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s-~L~~~ad~~l~~~~~e 161 (188)
T PRK13937 102 ALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGG-KMKELCDHLLIVPSDD 161 (188)
T ss_pred hhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCC-hhHHhCCEEEEeCCCC
Confidence 36789999999999999999999999999999999999999999 9999999999998743
No 18
>PRK13936 phosphoheptose isomerase; Provisional
Probab=99.87 E-value=6.3e-21 Score=150.76 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh------hcCCeEEEec-
Q 028777 10 SSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA------HLGISTHLVF- 82 (204)
Q Consensus 10 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~------~lg~~~~~~~- 82 (204)
++.+....+.+.+..+.++ +.+++.++.+++.+.++++|++||.|.|...|++++.+|. ++|+++....
T Consensus 8 ~~~~~~~~~~l~~~~~~~~----~~i~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~ 83 (197)
T PRK13936 8 RQHFEDSIDTKQQAMEVLA----PPIAQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTT 83 (197)
T ss_pred HHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCC
Confidence 3444445555555544444 3567799999999999999999999999999999999997 8899987652
Q ss_pred ----------CC---------CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhc---cCeE
Q 028777 83 ----------DM---------TTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKH---ASVV 140 (204)
Q Consensus 83 ----------d~---------~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~---ad~~ 140 (204)
|. .....+++|++|+||.||++++++++++.||++|+++|+||+++++ |++++ ||+.
T Consensus 84 ~~~~~~~~~~d~~~~~~~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s-~l~~l~~~ad~~ 162 (197)
T PRK13936 84 DTSTLTAIANDYSYNEVFSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGG-KMASLLLPEDVE 162 (197)
T ss_pred cHHHHHHHhhcCCHHHHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC-hhhhhhccCCEE
Confidence 20 1244589999999999999999999999999999999999999999 99995 9999
Q ss_pred EEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHh
Q 028777 141 AYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEAL 189 (204)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~ 189 (204)
|.++..+.. +.....+++.++|...+....
T Consensus 163 l~v~~~~~~-------------------~~~e~~~~~~h~l~~~v~~~~ 192 (197)
T PRK13936 163 IRVPAERTA-------------------RIQEVHLLAIHCLCDLIDSQL 192 (197)
T ss_pred EEeCCCcHH-------------------HHHHHHHHHHHHHHHHHHHHh
Confidence 999874421 122345566677666555443
No 19
>PRK13938 phosphoheptose isomerase; Provisional
Probab=99.87 E-value=4.6e-21 Score=151.00 Aligned_cols=137 Identities=17% Similarity=0.201 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh--------hcCCeEEEecC------------------CC
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA--------HLGISTHLVFD------------------MT 85 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~--------~lg~~~~~~~d------------------~~ 85 (204)
.+.+.+..+.+++.+.+++||+++|.|.|+.+|++|+.+|. ++|..+...++ +.
T Consensus 28 ~~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~ 107 (196)
T PRK13938 28 LEAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARAL 107 (196)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHH
Confidence 34455556666666889999999999999999999999997 45555554433 12
Q ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccc
Q 028777 86 TPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMP 165 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~ 165 (204)
....+++|++|++|.||++++++++++.||++|+++|+||+++++ |++++||+.|.++..+...
T Consensus 108 ~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s-~La~~aD~~l~v~~~e~~~--------------- 171 (196)
T PRK13938 108 EGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGG-QLAEFADFLINVPSRDTGR--------------- 171 (196)
T ss_pred HhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC-hhhhhCCEEEEeCCCchhh---------------
Confidence 467899999999999999999999999999999999999999999 9999999999998744321
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH
Q 028777 166 MGSVYEGAMFVLFEMVVYKLGEA 188 (204)
Q Consensus 166 ~~s~~~~~~~~~ld~L~~~l~~~ 188 (204)
.....++++++|...+-+.
T Consensus 172 ----v~e~h~~~~h~l~~~v~~~ 190 (196)
T PRK13938 172 ----IQESHIVFIHAISEHVEHA 190 (196)
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 1234566777777655443
No 20
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.87 E-value=5.2e-21 Score=141.71 Aligned_cols=132 Identities=22% Similarity=0.325 Sum_probs=112.7
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-----CCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-----MTTPPISSNDLLIASAGPGGFSTVDAICS 112 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~~~~~~~~ 112 (204)
+++++++.|.++++|+++|+|.|..+|++++++|..+|+++..+.+ ......+++|++|++|.+|++++++++++
T Consensus 2 ~i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~ 81 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAE 81 (139)
T ss_pred HHHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999999999999998876 12235689999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHH
Q 028777 113 RARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVY 183 (204)
Q Consensus 113 ~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~ 183 (204)
.++++|+++|+||++.++ ++++++|++|.++...... +..+..+. ...++++|+|+.
T Consensus 82 ~a~~~g~~iv~iT~~~~~-~l~~~~d~~i~~~~~~~~~-----------~~~~~~~~--~~~~~~~d~l~~ 138 (139)
T cd05013 82 IAKERGAKVIAITDSANS-PLAKLADIVLLVSSEEGDF-----------RSSAFSSR--IAQLALIDALFL 138 (139)
T ss_pred HHHHcCCeEEEEcCCCCC-hhHHhcCEEEEcCCCcccc-----------ccchHHHH--HHHHHHHHHHHh
Confidence 999999999999999999 9999999999998765421 11233332 247788998874
No 21
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=99.87 E-value=2.2e-20 Score=147.03 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh------hcCCeEEEecC--------------------CCCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA------HLGISTHLVFD--------------------MTTP 87 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~------~lg~~~~~~~d--------------------~~~~ 87 (204)
.+++.++.+++.+.+++||+++|.|.|+..|++++.+|. +.|+++..+.+ +...
T Consensus 26 ~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~ 105 (196)
T PRK10886 26 AISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRA 105 (196)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHH
Confidence 466677777888889999999999999999999999884 78999997653 1123
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhc---cCeEEEeCCcc
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKH---ASVVAYVPAQT 147 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~---ad~~l~~~~~~ 147 (204)
..+++|++|+||.||++++++++++.||++|+++|+||+.+++ |++++ +|+.|.+|...
T Consensus 106 ~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s-~l~~l~~~~D~~i~ip~~~ 167 (196)
T PRK10886 106 LGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG-ELAGLLGPQDVEIRIPSHR 167 (196)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC-hhhhccccCCEEEEcCCCc
Confidence 4799999999999999999999999999999999999999999 99997 79999998743
No 22
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=99.87 E-value=3.2e-21 Score=146.84 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCcEEEEecchhHHHHHHH------HHHHhhcCCeEEEec-CC-------------------CCCCCCCCc
Q 028777 40 AELTNTATQKGSVFLYGVGREGLMLKAL------CMRLAHLGISTHLVF-DM-------------------TTPPISSND 93 (204)
Q Consensus 40 ~~~~~~i~~a~~I~i~G~G~S~~~a~~~------~~~l~~lg~~~~~~~-d~-------------------~~~~~~~~D 93 (204)
+.+++.+.+++||++||.|.|..+|+++ +++|.++|+++...+ +. ....++++|
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 5789999999999999999999999999 467788999999877 31 013468999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCc
Q 028777 94 LLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 94 lvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~ 146 (204)
++|+||.||++++++++++.||++|+++|+||+++++ |++++||++|.++..
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s-~l~~~ad~~l~~~~~ 133 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGG-KMAGLADIELRVPHF 133 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC-chhhhCCEEEEeCCC
Confidence 9999999999999999999999999999999999999 999999999999864
No 23
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.85 E-value=3.7e-20 Score=135.89 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=86.9
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcC-CeEEEecC----CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEe
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLG-ISTHLVFD----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg-~~~~~~~d----~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT 125 (204)
||+++|.|.|..+|.+++++|.++| +++..... .....++++|++|++|.||++++++++++.||++|+++|+||
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT 80 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAIT 80 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEE
Confidence 6999999999999999999999987 78887653 334568899999999999999999999999999999999999
Q ss_pred cCCCCcchhhccCeEEEeCCc
Q 028777 126 AQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 126 ~~~~s~~l~~~ad~~l~~~~~ 146 (204)
++++| |++++||++|.++..
T Consensus 81 ~~~~s-~la~~ad~~l~~~~~ 100 (126)
T cd05008 81 NVVGS-TLAREADYVLYLRAG 100 (126)
T ss_pred CCCCC-hHHHhCCEEEEecCC
Confidence 99999 999999999999864
No 24
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=99.85 E-value=3.3e-20 Score=136.66 Aligned_cols=124 Identities=20% Similarity=0.327 Sum_probs=103.9
Q ss_pred HHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcC
Q 028777 45 TATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD------MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYG 118 (204)
Q Consensus 45 ~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g 118 (204)
.|.++++|+++|.|.|+.+|+++.++|.++|..+....+ .....++++|++|+||.+|+++++++.++.||++|
T Consensus 1 ~i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g 80 (131)
T PF01380_consen 1 KIAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERG 80 (131)
T ss_dssp -HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcC
Confidence 367899999999999999999999999999988777654 22567799999999999999999999999999999
Q ss_pred CeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHH
Q 028777 119 ARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVY 183 (204)
Q Consensus 119 ~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~ 183 (204)
+++|+||+++++ |+++.+|++|.++..+.. . ..++.+ ..+.+.++|+++.
T Consensus 81 ~~vi~iT~~~~~-~l~~~ad~~l~~~~~~~~--~----------~~~~~s--~~~~~~~~~~l~~ 130 (131)
T PF01380_consen 81 APVILITSNSES-PLARLADIVLYIPTGEES--Q----------SASTSS--FSAQLSLLDALFN 130 (131)
T ss_dssp SEEEEEESSTTS-HHHHHSSEEEEEESSCGS--S----------SSHSHH--HHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCC-chhhhCCEEEEecCCCcc--c----------cchHHH--HHHHHHHHHHHHh
Confidence 999999999999 999999999999876543 1 122322 2456778888764
No 25
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.84 E-value=5.2e-20 Score=153.97 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHH-HHHHHHHhhcCCeEEE---------
Q 028777 11 SLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLML-KALCMRLAHLGISTHL--------- 80 (204)
Q Consensus 11 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a-~~~~~~l~~lg~~~~~--------- 80 (204)
++++.+.++-....+.+... .+.+.+.++.+++.+.+++|||++|.|+|+.+| .++...+.++|.+...
T Consensus 25 ~~~~~~~~ed~~~~~av~~~-l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~ 103 (299)
T PRK05441 25 EILRLINEEDKKVALAVEKA-LPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGE 103 (299)
T ss_pred HHHHHHHHhhHHHHHHHHHh-HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCc
Confidence 45555555555544444433 346778999999999999999999999999999 6777777777775211
Q ss_pred ---------ecC--------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 81 ---------VFD--------MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 81 ---------~~d--------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
..| .....++++|++|+||.||+|++++.+++.||++|+++|+||+++++ ||++.+|+.|.+
T Consensus 104 ~a~~~a~e~~ed~~~~~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s-~La~~aD~~I~~ 182 (299)
T PRK05441 104 KALTKAVEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGS-PLSKEADIAIEV 182 (299)
T ss_pred HHHHhcccccCChHHHHHHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC-hhhHhCCEEEEc
Confidence 111 12356889999999999999999999999999999999999999999 999999999998
Q ss_pred CCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhCC
Q 028777 144 PAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQ 191 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~ 191 (204)
+...+...+ . ..+.+ ..+..+++|+|+..++.+.|.
T Consensus 183 ~~g~E~~~~------s----t~~~s--~taqk~iLn~lst~~~~~~gk 218 (299)
T PRK05441 183 VVGPEVLTG------S----TRMKA--GTAQKLVLNMISTGVMIRLGK 218 (299)
T ss_pred CCCCccccc------c----ccccc--hhHHHHHHHHHHHHHHHHccH
Confidence 864433211 0 11222 134677888888888777765
No 26
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=99.84 E-value=8.5e-20 Score=149.72 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHH-HHHHHHhhcCCeE-----EEe--
Q 028777 10 SSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLK-ALCMRLAHLGIST-----HLV-- 81 (204)
Q Consensus 10 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~-~~~~~l~~lg~~~-----~~~-- 81 (204)
.++++.+.++.....+.+... .+.+.+.++.+++.+.+++||+++|.|+|+.+|. +....+.++|.+. ...
T Consensus 11 ~~~~~~~~~~~~~~~~av~~~-l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg 89 (257)
T cd05007 11 LEILRLLNEEDKKVAAAVEAA-LPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGG 89 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCC
Confidence 345555666666665555543 3467889999999999999999999999999884 4445555666522 111
Q ss_pred ------------cC-------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEE
Q 028777 82 ------------FD-------MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAY 142 (204)
Q Consensus 82 ------------~d-------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~ 142 (204)
+| .....++++|++|+||.||+|++++.+++.||++|+++|+||+++++ |+.++||+.|.
T Consensus 90 ~~a~~~a~~~~edd~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s-~L~~~aD~~I~ 168 (257)
T cd05007 90 EPALTRAVEGAEDDEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGS-PLLQLADIAIA 168 (257)
T ss_pred HHHHHhhccccCChHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC-hhHHhCCEEEE
Confidence 11 22356789999999999999999999999999999999999999999 99999999999
Q ss_pred eCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhCC
Q 028777 143 VPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQ 191 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~ 191 (204)
++.......+ ...+.+ ..+..+++|+|+..++.+.|.
T Consensus 169 ~~~g~E~~~~----------st~~~s--~~aqk~vLn~L~t~~~~~~g~ 205 (257)
T cd05007 169 LITGPEVVAG----------STRLKA--GTAQKLALNMLSTAVMIRLGK 205 (257)
T ss_pred cCCCCccccC----------cccccc--HHHHHHHHHHHHHHHHHHcch
Confidence 8764433211 011222 235677888888888887654
No 27
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.83 E-value=1.1e-19 Score=132.90 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=87.1
Q ss_pred cEEEEecchhHHHHHHHHHHHhhc-CCeEEEecC-----CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEE
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHL-GISTHLVFD-----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLL 124 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~i 124 (204)
||+++|.|.|..+|.+++++|.++ |+++....+ .....++++|++|++|.||++++++++++.||++|+++|+|
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~i 80 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL 80 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEE
Confidence 699999999999999999999987 788887665 23356889999999999999999999999999999999999
Q ss_pred ecCCCCcchhhccCeEEEeCCc
Q 028777 125 TAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 125 T~~~~s~~l~~~ad~~l~~~~~ 146 (204)
|++++| |++++||++|.+++.
T Consensus 81 T~~~~s-~la~~ad~~l~~~~~ 101 (120)
T cd05710 81 TDDEDS-PLAKLADYVIVYGFE 101 (120)
T ss_pred ECCCCC-cHHHhCCEEEEccCC
Confidence 999999 999999999999875
No 28
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=99.82 E-value=3.1e-19 Score=148.56 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHH-HHHHHHHHhhcCCeEEEe--------
Q 028777 11 SLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLM-LKALCMRLAHLGISTHLV-------- 81 (204)
Q Consensus 11 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~-a~~~~~~l~~lg~~~~~~-------- 81 (204)
++++.+.++=.+....+... .+.+.+.++.+++.+.+++||+++|.|+|+.+ +.+....+.++|.+...+
T Consensus 20 ~~~~~~~~~d~~~~~av~~~-l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~ 98 (291)
T TIGR00274 20 EIVRLINEEDKLVPLAIESV-LPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGE 98 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCCh
Confidence 45555555555555555443 34567788888999999999999999999986 556555666666543311
Q ss_pred ----------cC--------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 82 ----------FD--------MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 82 ----------~d--------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
.| .....++++|++|+||.||+|++++.+++.||++|+++|+||+++++ +++++||+.|.+
T Consensus 99 ~a~~~~~e~~Ed~~~~~~~dl~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s-~La~~aD~~I~~ 177 (291)
T TIGR00274 99 CAILHAVEGAEDSTEAGANDLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKS-AASEIADIAIET 177 (291)
T ss_pred HHHhccchhhhcchHHHHHHHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC-hhHHhCCEEEec
Confidence 11 23346889999999999999999999999999999999999999999 999999999988
Q ss_pred CCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhCCC
Q 028777 144 PAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQS 192 (204)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~ 192 (204)
+...+... ...++.+ ..+..+++|+|+..++.+.|..
T Consensus 178 ~~g~E~~~----------~st~~~s--~~aqk~iLd~L~t~~~~~~gk~ 214 (291)
T TIGR00274 178 IVGPEILT----------GSSRLKA--GTAQKMVLNMLSTASMIKLGKV 214 (291)
T ss_pred CCCCcccc----------ccchhhH--HHHHHHHHHHHHHHHHHhcchh
Confidence 65433211 1122333 2467899999999999998754
No 29
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=99.79 E-value=3e-18 Score=146.04 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=93.7
Q ss_pred HHHHHHHHHhc--CCcEEEEecchhHHHHHHHHHHHhhc-CCeEEEecC-----CCCCCCCCCcEEEEEeCCCCCHHHHH
Q 028777 38 MVAELTNTATQ--KGSVFLYGVGREGLMLKALCMRLAHL-GISTHLVFD-----MTTPPISSNDLLIASAGPGGFSTVDA 109 (204)
Q Consensus 38 ~l~~~~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~~~~~ 109 (204)
.++++++.+.+ +++|+++|+|+|..+|..+.+.+.++ ++++....+ .....++++|++|++|+||+|+++++
T Consensus 31 ~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i~ 110 (340)
T PRK11382 31 LVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIK 110 (340)
T ss_pred HHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCCcCCCCCCEEEEEcCCCCCHHHHH
Confidence 78888998885 99999999999999998888776654 446666655 22335789999999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCc
Q 028777 110 ICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 110 ~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~ 146 (204)
+++.||++|+++|+||++++| ||++.||++|.+..+
T Consensus 111 al~~ak~~Ga~~I~IT~~~~S-~L~~~ad~~l~~~ag 146 (340)
T PRK11382 111 ALELGRACGALTAAFTKRADS-PITSAAEFSIDYQAD 146 (340)
T ss_pred HHHHHHHcCCeEEEEECCCCC-hHHHhCCEEEEeCCC
Confidence 999999999999999999999 999999999999753
No 30
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.78 E-value=4.5e-18 Score=142.01 Aligned_cols=169 Identities=16% Similarity=0.173 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHH-hhcCCeEE-----Ee-c
Q 028777 10 SSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRL-AHLGISTH-----LV-F 82 (204)
Q Consensus 10 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l-~~lg~~~~-----~~-~ 82 (204)
.++++.+.++-.+..+.+... .+.+.+.++.+++.+.+++|||++|.|+|+.+|...+..+ ..++.+.. .. +
T Consensus 20 ~~~~~~~~~~d~~~~~av~~~-~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg 98 (296)
T PRK12570 20 LDIVTLINQEDKKVPLAVEKV-LPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGG 98 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecC
Confidence 345555666666665554432 3467778899999999999999999999998865544332 33333221 11 0
Q ss_pred ------------C--------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEE
Q 028777 83 ------------D--------MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAY 142 (204)
Q Consensus 83 ------------d--------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~ 142 (204)
| .....++++|++|++|.||+|++++.+++.|+++|+++|+||+++++ |+++.+|+.|.
T Consensus 99 ~~a~~~a~~~~ed~~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s-~La~~aD~~I~ 177 (296)
T PRK12570 99 PEAMFTAVEGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDS-PIAKIADIAIS 177 (296)
T ss_pred chHhhhcccccCCcHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC-hhHHhCCEEEe
Confidence 1 12345689999999999999999999999999999999999999999 99999999998
Q ss_pred eCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhCCC
Q 028777 143 VPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQS 192 (204)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~ 192 (204)
+....+... ...++.+ ..+..+++|+|+..++.+.|..
T Consensus 178 ~~~g~E~~~----------~st~~~s--~taqk~vLd~L~t~~~~r~Gk~ 215 (296)
T PRK12570 178 PVVGPEVLT----------GSTRLKS--GTAQKMVLNMLSTASMIRLGKS 215 (296)
T ss_pred eCcCCcccc----------ccchHHH--HHHHHHHHHHHHHHHHHhcchh
Confidence 654333211 1112222 3467899999999999998753
No 31
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=99.76 E-value=2.8e-18 Score=132.21 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=122.5
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeE-EEec-----C----------
Q 028777 20 IASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGIST-HLVF-----D---------- 83 (204)
Q Consensus 20 i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~-~~~~-----d---------- 83 (204)
..+.++.+.+.+++.+++..+.+++.+.+.++|++||+|+|.++|++..+|-.-+-.-. +... |
T Consensus 9 ~~~~l~~l~~~~a~~i~kaa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lEr 88 (243)
T COG4821 9 AIELLSELLDTQAENIKKAAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLER 88 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCccccccccCChhhhcccccccchhHh
Confidence 33334444444445667788889999999999999999999999999999886543221 1111 1
Q ss_pred --------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCc----------chhhccCeEEEeCC
Q 028777 84 --------MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESG----------SSVKHASVVAYVPA 145 (204)
Q Consensus 84 --------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~----------~l~~~ad~~l~~~~ 145 (204)
.....++++|++|++|.||.++-.+++++++|++|+++|++|+.+.|- .|.+++|++|....
T Consensus 89 ieg~~~~~l~~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~a 168 (243)
T COG4821 89 IEGYAKLFLHRLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGA 168 (243)
T ss_pred hhhHHHHHHHHhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCC
Confidence 123478999999999999999999999999999999999999987761 57788999998754
Q ss_pred ccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHH---HHHhCCChHHHHh
Q 028777 146 QTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKL---GEALGQSPEAVRS 198 (204)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l---~~~~g~~~~~~~~ 198 (204)
...+...+..+..-.+.|.++.. ...+++.++.+. +-..|-+|..|++
T Consensus 169 --v~GDAvl~~a~~ei~~~ptSt~~---g~~ilqa~faeai~~mv~~g~~pPvf~S 219 (243)
T COG4821 169 --VKGDAVLEIAGSEIKVGPTSTVS---GVTILQATFAEAIELMVEKGYTPPVFLS 219 (243)
T ss_pred --cccchheeecCccccccCcchhH---HHHHHHHHHHHHHHHHHhCCCCCCeeee
Confidence 33333322333333567777653 344556665544 4455767766654
No 32
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.76 E-value=4.1e-17 Score=148.69 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc-CCeEEEe--cC--CCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL-GISTHLV--FD--MTTPPISSNDLLIASAGPGGFSTVDAICS 112 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~--~d--~~~~~~~~~DlvI~iS~sG~t~~~~~~~~ 112 (204)
.++..++.+.++++|+++|+|.|..+|..+.+.+.++ ++.+... .+ .....++++|++|++|+||+|++++++++
T Consensus 278 ~~~~~~~~l~~a~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~i~a~~ 357 (604)
T PRK00331 278 EGELADEDLKKIDRIYIVACGTSYHAGLVAKYLIESLAGIPVEVEIASEFRYRDPVLSPKTLVIAISQSGETADTLAALR 357 (604)
T ss_pred chhhhHHHHhcCCEEEEEEeecHHHHHHHHHHHHHHHcCCCEEEEehhhhhccCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4556688899999999999999988777777766554 3344433 23 23456789999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q 028777 113 RARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 113 ~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g 190 (204)
.||++|+++|+||++++| ||++.||++|.++..... +.....+ ..+.+.++++|...+....|
T Consensus 358 ~ak~~ga~~IaIT~~~~S-~La~~aD~~l~~~~~~e~------------~~~~tks--~~s~l~~l~lL~~~~~~~~g 420 (604)
T PRK00331 358 LAKELGAKTLAICNVPGS-TIARESDAVLYTHAGPEI------------GVASTKA--FTAQLAVLYLLALALAKARG 420 (604)
T ss_pred HHHHCCCCEEEEECCCCC-hhHHhcCcEEEecCcCcc------------chhhhHH--HHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999 999999999998764321 1111112 23456677777777766655
No 33
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.6e-17 Score=124.71 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHH------hhcCCeEEEec-C-------------------C
Q 028777 31 HPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRL------AHLGISTHLVF-D-------------------M 84 (204)
Q Consensus 31 ~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l------~~lg~~~~~~~-d-------------------~ 84 (204)
+.+.+++..+.+++.+.+.++|.++|.|+|..-|++|+-.| .+-+++++.++ | +
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRq 102 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQ 102 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHH
Confidence 34567778888889999999999999999999999887544 46688888876 3 1
Q ss_pred CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCc
Q 028777 85 TTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~ 146 (204)
....-.++|++|.||.||+++.++++++.||++|++||++|+..+. .++.+||+.|.+|+.
T Consensus 103 veA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG-~~~~~~D~~i~VPs~ 163 (176)
T COG0279 103 VEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGG-KLAGLLDVEIRVPST 163 (176)
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCc-ccccccceEEecCCC
Confidence 2245579999999999999999999999999999999999999998 999999999999975
No 34
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.73 E-value=1.6e-16 Score=144.91 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=100.4
Q ss_pred HHHhcCCcEEEEecchhHHHHHHHHH---HHhhcCCeEEEecC--CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcC
Q 028777 44 NTATQKGSVFLYGVGREGLMLKALCM---RLAHLGISTHLVFD--MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYG 118 (204)
Q Consensus 44 ~~i~~a~~I~i~G~G~S~~~a~~~~~---~l~~lg~~~~~~~d--~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g 118 (204)
+.+.++++|+++|+|.|..++..+.+ ++..++..+....+ .....++++|++|+||+||+|++++++++.||++|
T Consensus 286 ~~l~~~~~I~~~G~GsS~~aa~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~v~a~~~ak~~g 365 (607)
T TIGR01135 286 ELLKNVDRIQIVACGTSYHAGLVAKYLIERLAGIPVEVEIASEFRYRKPVVDKDTLVIAISQSGETADTLAALRLAKELG 365 (607)
T ss_pred hHhccCCEEEEEEeechHHHHHHHHHHHHHhcCCCEEEecHHHHhhcCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcC
Confidence 56889999999999999665555554 44444444333233 33456689999999999999999999999999999
Q ss_pred CeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q 028777 119 ARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 119 ~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g 190 (204)
+++|+||++++| ||++.||++|.++..... ......+ ..+.+.++++|...+....|
T Consensus 366 a~~IaIT~~~~S-~La~~ad~~l~~~~~~e~------------~~~~tks--~~s~l~~l~lL~~~l~~~~g 422 (607)
T TIGR01135 366 AKTLGICNVPGS-TLVRESDHTLYTRAGPEI------------GVASTKA--FTTQLTVLYLLALKLAKARG 422 (607)
T ss_pred CcEEEEECCCCC-hHHhhcCceEEecCCCcc------------chhhhHH--HHHHHHHHHHHHHHHHHHcC
Confidence 999999999999 999999999999764321 1111112 24567788888888887766
No 35
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.73 E-value=5.1e-16 Score=142.27 Aligned_cols=107 Identities=10% Similarity=0.009 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCe--EEEecC---CCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q 028777 39 VAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGIS--THLVFD---MTTPPISSNDLLIASAGPGGFSTVDAICSR 113 (204)
Q Consensus 39 l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~--~~~~~d---~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ 113 (204)
++++++.+.++++|+++|+|.|..+|.+++++|.+++.. +..... ......+++|++|++|+||+|++++++++.
T Consensus 312 ~~~~~~~l~~~~~I~i~g~GsS~~aa~~~~~~l~~~~~~~~v~~~~~s~~~~~~~~~~~~lvI~ISqSGeT~d~i~al~~ 391 (640)
T PTZ00295 312 LDQYLEELLNIKNLILVGCGTSYYAALFAASIMQKLKCFNTVQVIDASELTLYRLPDEDAGVIFISQSGETLDVVRALNL 391 (640)
T ss_pred hHHHHHHHhcCCEEEEEEeehHHHHHHHHHHHHHHhCCCCceEEechHHhhhhccCCCCCEEEEEeCCCCcHHHHHHHHH
Confidence 667788899999999999999999999999999987543 433332 222345689999999999999999999999
Q ss_pred HHHcCCeEEEEecCCCCcchhhccCeEEEeCCc
Q 028777 114 ARSYGARVLLLTAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 114 ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~ 146 (204)
||++|+++|+||+.++| ||++.||++|.+++.
T Consensus 392 ak~~Ga~~IaITn~~~S-~La~~ad~~l~~~ag 423 (640)
T PTZ00295 392 ADELNLPKISVVNTVGS-LIARSTDCGVYLNAG 423 (640)
T ss_pred HHHCCCCEEEEECCCCC-hhHHhcCEEEEeCCc
Confidence 99999999999999999 999999999998653
No 36
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.72 E-value=9.4e-17 Score=117.05 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=82.3
Q ss_pred cEEEEecchhHHHHHHHHHHHhh-cCCeEEEecC-CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCC
Q 028777 51 SVFLYGVGREGLMLKALCMRLAH-LGISTHLVFD-MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~-lg~~~~~~~d-~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
+|+++|.|.|..+|+++.++|.. .|+++....+ .....++++|++|++|.||++++++++++.||++|+++|+||+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-- 78 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLPAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-- 78 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccCcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC--
Confidence 68999999999999999999998 5999998876 2334678999999999999999999999999999999999996
Q ss_pred CCcchhhccC----eEEEeCCc
Q 028777 129 ESGSSVKHAS----VVAYVPAQ 146 (204)
Q Consensus 129 ~s~~l~~~ad----~~l~~~~~ 146 (204)
++ +++++|| ..+.+|..
T Consensus 79 ~~-~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 79 GG-KLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred Cc-hHHHHHHHcCCcEEECCCC
Confidence 46 8999999 67777663
No 37
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.72 E-value=3.7e-16 Score=143.40 Aligned_cols=107 Identities=17% Similarity=0.092 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCcEEEEecchhHHHHHH---HHHHHhhcCCeEEEecC--CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q 028777 40 AELTNTATQKGSVFLYGVGREGLMLKA---LCMRLAHLGISTHLVFD--MTTPPISSNDLLIASAGPGGFSTVDAICSRA 114 (204)
Q Consensus 40 ~~~~~~i~~a~~I~i~G~G~S~~~a~~---~~~~l~~lg~~~~~~~d--~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~a 114 (204)
..+++.+.++++|+++|+|+|..+|.. +..++..++..+....+ .....++++|++|++|+||+|.+++++++.|
T Consensus 345 ~~~~~~l~~a~rI~ivG~GtS~~aa~~ak~~~~kl~~i~v~v~~asef~~~~~~~~~~dlvI~ISqSGeT~dtl~Al~~A 424 (670)
T PTZ00394 345 QQSIRAILTSRRILFIACGTSLNSCLAVRPLFEELVPLPISVENASDFLDRRPRIQRDDVCFFVSQSGETADTLMALQLC 424 (670)
T ss_pred HHHHHHHhCCCEEEEEEechHHHHHHHHHHHHHHhcCCCEEEeccchhhhhccCCCCCCEEEEEECCcCcHHHHHHHHHH
Confidence 456678899999999999999966665 45566666665554444 3345678999999999999999999999999
Q ss_pred HHcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 115 RSYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 115 k~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
|++|+++|+||++++| ||++.||++|.++...
T Consensus 425 k~~Ga~tIaITn~~~S-~La~~AD~~l~~~ag~ 456 (670)
T PTZ00394 425 KEAGAMCVGITNVVGS-SISRLTHYAIHLNAGV 456 (670)
T ss_pred HHCCCcEEEEECCCCC-HHHHhcCeEEEecccc
Confidence 9999999999999999 9999999999987643
No 38
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.69 E-value=2.2e-15 Score=138.69 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc-CCeEEEec--C--CCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q 028777 37 IMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL-GISTHLVF--D--MTTPPISSNDLLIASAGPGGFSTVDAIC 111 (204)
Q Consensus 37 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~--d--~~~~~~~~~DlvI~iS~sG~t~~~~~~~ 111 (204)
..+.++++.+.++++|+++|+|+|..+|..+++.+.++ |+++.... + .......++|++|++|+||+|+++++++
T Consensus 351 ~~l~~~~~~l~~~~~I~~~G~GsS~~aa~~a~~~l~kl~~i~v~~~~~sef~~~~~~~~~~~lvI~ISqSGeT~eti~Al 430 (680)
T PLN02981 351 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMELASDLLDRQGPIYREDTAVFVSQSGETADTLRAL 430 (680)
T ss_pred HHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHHHhCCCEEEecchHHHhccccCCCCCeEEEEeCCcCCHHHHHHH
Confidence 35778888899999999999999999999776666543 55555433 3 2223456899999999999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 112 SRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 112 ~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
+.||++|+++|+||++++| +|++.||+++.++...
T Consensus 431 ~~Ak~~Ga~~IaITn~~~S-~La~~ad~~i~~~~g~ 465 (680)
T PLN02981 431 EYAKENGALCVGITNTVGS-AISRGTHCGVHINAGA 465 (680)
T ss_pred HHHHHCCCcEEEEECCCCC-hhHhccCeeEEecCcc
Confidence 9999999999999999999 9999999999987643
No 39
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=99.68 E-value=9.2e-17 Score=120.12 Aligned_cols=111 Identities=17% Similarity=0.294 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc------CCeEEEecC------
Q 028777 16 ICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL------GISTHLVFD------ 83 (204)
Q Consensus 16 ~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l------g~~~~~~~d------ 83 (204)
|++++.++++.+...+.+.+.+..+.+++.+.+.++||++|.|+|...|+++..++..+ ..++..+.+
T Consensus 2 y~~~~~~~l~~v~~~~~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (138)
T PF13580_consen 2 YFDEIQELLEAVEETQAEAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAI 81 (138)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhh
Confidence 45566666666633345678888899999999999999999999999999999998643 344444422
Q ss_pred --------------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 84 --------------MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 84 --------------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
.....++++|++|+||.||+++.++++++.||++|++||+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 82 SNDLEYDEGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHHTTGGGTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred hcccchhhHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 1123489999999999999999999999999999999999995
No 40
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.67 E-value=1.9e-15 Score=114.05 Aligned_cols=136 Identities=20% Similarity=0.279 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcC-CeEEEecC-----CCCCCCCCCcEEEEEeCCCCCHH-HHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLG-ISTHLVFD-----MTTPPISSNDLLIASAGPGGFST-VDAI 110 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg-~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~~-~~~~ 110 (204)
.++++++.+.++++|+++|.|.+..+|.+++.+|..++ +++....+ .....++++|++|++|.+|++.+ +.++
T Consensus 2 ~~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~ 81 (153)
T cd05009 2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL 81 (153)
T ss_pred hHHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHH
Confidence 67899999999999999999999999999999999886 68887664 22345789999999999999776 8899
Q ss_pred HHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q 028777 111 CSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 111 ~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g 190 (204)
++.+|++|+++++||+... . .+.+|+.+.++..... +.| ....+.++.+...+....|
T Consensus 82 ~~~~~~~~~~vi~it~~~~--s-~~~~d~~i~~~~~~~~-------------~~~------~~~~~~~q~la~~~a~~~g 139 (153)
T cd05009 82 IKEVKARGAKVIVITDDGD--A-KDLADVVIRVPATVEE-------------LSP------LLYIVPLQLLAYHLAVARG 139 (153)
T ss_pred HHHHHHcCCEEEEEecCCc--c-cccCCeEEECCCCchh-------------HHH------HHHHHHHHHHHHHHHHHcC
Confidence 9999999999999998765 4 7899999988763321 122 2367788999999999999
Q ss_pred CChHH
Q 028777 191 QSPEA 195 (204)
Q Consensus 191 ~~~~~ 195 (204)
..|..
T Consensus 140 ~~~~~ 144 (153)
T cd05009 140 IDPDK 144 (153)
T ss_pred CCCCC
Confidence 88763
No 41
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=8e-15 Score=124.19 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcC--CcEEEEecchhHHHHHHHHHHHh-hcCCeEEEecC-----CCCCCCCCCcEEEEEeCCCCCHHHHH
Q 028777 38 MVAELTNTATQK--GSVFLYGVGREGLMLKALCMRLA-HLGISTHLVFD-----MTTPPISSNDLLIASAGPGGFSTVDA 109 (204)
Q Consensus 38 ~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~~~~~ 109 (204)
.++++++.+++. .+|++.|+|+|..++..+.+.+. ..|..+..++. .-.....++.++|++|.||+|+|++.
T Consensus 26 ~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se~~~~~~~~~~~~~lvi~~S~SG~TpE~va 105 (340)
T COG2222 26 VLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVA 105 (340)
T ss_pred HHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceeeeechhHHhccCccccCCCeEEEEEeCCCCCHHHHH
Confidence 788888888876 59999999999999999999887 67777666553 33455677889999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 110 ICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 110 ~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
+++.||+.|+.+|+||+..+| ||++.||+.|.++...
T Consensus 106 a~~~a~~~ga~~i~lT~~~dS-pLa~~ad~~i~~~~~~ 142 (340)
T COG2222 106 AAELAKEGGALTIALTNEEDS-PLARAADYVIPYLAGE 142 (340)
T ss_pred HHHHhccCCCeEEEEecCCCC-hhhhcCCeeeeccCCc
Confidence 999999999999999999999 9999999999997744
No 42
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=99.62 E-value=1.9e-14 Score=122.65 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=86.0
Q ss_pred HHHhcCCcEEEEecchhHHHHHHHHHHH-hhcCCeEEEecC-CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeE
Q 028777 44 NTATQKGSVFLYGVGREGLMLKALCMRL-AHLGISTHLVFD-MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARV 121 (204)
Q Consensus 44 ~~i~~a~~I~i~G~G~S~~~a~~~~~~l-~~lg~~~~~~~d-~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~v 121 (204)
..+.++++|+++|.|.|...|+++.+.+ .++++++....+ ......+++|++|++|.||+|.+++++++.|+++|+++
T Consensus 29 ~~~~~~~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~v 108 (337)
T PRK08674 29 EDLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFVNRDYTLPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAKI 108 (337)
T ss_pred hhhcCCCEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeE
Confidence 3556899999999999999999999886 568898888776 33345689999999999999999999999999999999
Q ss_pred EEEecCCCCcchhhccCe----EEEeCC
Q 028777 122 LLLTAQPESGSSVKHASV----VAYVPA 145 (204)
Q Consensus 122 I~iT~~~~s~~l~~~ad~----~l~~~~ 145 (204)
|+||+ ++ +|+++||. ++.+|.
T Consensus 109 IaIT~--~~-~L~~~a~~~~~~~i~ip~ 133 (337)
T PRK08674 109 IAITS--GG-KLKEMAKEHGLPVIIVPG 133 (337)
T ss_pred EEECC--Cc-hHHHHHHhcCCeEEEeCC
Confidence 99996 56 89999887 777764
No 43
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=8.9e-14 Score=123.96 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=102.2
Q ss_pred HHhcCCcEEEEecchhHHHHHHHHH---HHhhcCCeEEEecC--CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCC
Q 028777 45 TATQKGSVFLYGVGREGLMLKALCM---RLAHLGISTHLVFD--MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGA 119 (204)
Q Consensus 45 ~i~~a~~I~i~G~G~S~~~a~~~~~---~l~~lg~~~~~~~d--~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~ 119 (204)
.+.+.+||+++|+|.|++++....+ +|..+...+...++ ...+.+.++|++|+||+||+|.+++.++++||++|+
T Consensus 279 ~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~~~~~~~~L~I~ISQSGETaDTl~ALr~ak~~G~ 358 (597)
T COG0449 279 ILREVDRIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRLAKEQGA 358 (597)
T ss_pred hhcccceEEEEECcHHHHHHHHHHHHHHHHhCCCeEEEeechhhhhccCCCCCcEEEEEccCcccHHHHHHHHHHHHcCC
Confidence 6779999999999998765555444 55555555555555 455667888999999999999999999999999999
Q ss_pred eEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q 028777 120 RVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 120 ~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g 190 (204)
++++||+..+| ++.+.+|+.+++.+..+... .++-..++++..+-+|...+.+..|
T Consensus 359 ~tlaItNv~gS-ti~Resd~~l~~~AGpEigV--------------AsTKaftaQl~~L~lLal~~a~~~g 414 (597)
T COG0449 359 KTLAITNVPGS-TIARESDHTLLIRAGPEIGV--------------ASTKAFTAQVLALYLLALYLAKQRG 414 (597)
T ss_pred CEEEEEecCCC-hhhcccceEEEeccCCceee--------------ecchhHHHHHHHHHHHHHHHhHhhC
Confidence 99999999999 99999999999988654321 2222224566677777777777776
No 44
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.54 E-value=4.6e-14 Score=96.59 Aligned_cols=74 Identities=23% Similarity=0.381 Sum_probs=68.3
Q ss_pred EEEEecchhHHHHHHHHHHHhhc-CCeEEEecC-----CC-CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEE
Q 028777 52 VFLYGVGREGLMLKALCMRLAHL-GISTHLVFD-----MT-TPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLL 124 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~d-----~~-~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~i 124 (204)
|+++|.|.|..+|+++.++|.++ |+++....+ .. ...++++|++|++|.+|+++++.++++.+|++|+++|+|
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999999 999998776 11 467899999999999999999999999999999999999
Q ss_pred e
Q 028777 125 T 125 (204)
Q Consensus 125 T 125 (204)
|
T Consensus 81 t 81 (87)
T cd04795 81 T 81 (87)
T ss_pred e
Confidence 9
No 45
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=99.53 E-value=4.5e-13 Score=115.54 Aligned_cols=108 Identities=20% Similarity=0.247 Sum_probs=88.5
Q ss_pred HHHHHHHHHh--cCCcEEEEecchhHHHHHHHHHHHhh-cCCeEEEecC--CCC---CCC--CCCcEEEEEeCCCCCHHH
Q 028777 38 MVAELTNTAT--QKGSVFLYGVGREGLMLKALCMRLAH-LGISTHLVFD--MTT---PPI--SSNDLLIASAGPGGFSTV 107 (204)
Q Consensus 38 ~l~~~~~~i~--~a~~I~i~G~G~S~~~a~~~~~~l~~-lg~~~~~~~d--~~~---~~~--~~~DlvI~iS~sG~t~~~ 107 (204)
.++++++.+. ..++|+++|+|+|..+|..+.+.|.+ .|+++..... +.. ... ++++++|++|+||+|.++
T Consensus 29 ~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~~~~~e~~~~~~~~~~~~~~~lvi~iSqSGeT~et 108 (372)
T TIGR02815 29 ALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVSAVPTTDLVSNPRQYLDPTRPTLLVSFARSGNSPES 108 (372)
T ss_pred HHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEEEEeCcccccccccccCCCCCeEEEEEeCCcCcHHH
Confidence 6777777664 35799999999999999998888765 5777776543 211 222 357999999999999999
Q ss_pred HHHHHHHHHc--CCeEEEEecCCCCcchhhccC-----eEEEeCCc
Q 028777 108 DAICSRARSY--GARVLLLTAQPESGSSVKHAS-----VVAYVPAQ 146 (204)
Q Consensus 108 ~~~~~~ak~~--g~~vI~iT~~~~s~~l~~~ad-----~~l~~~~~ 146 (204)
+++++.||++ |+++|+||++++| +|++.|| +.+.++..
T Consensus 109 v~a~~~ak~~~~g~~~i~it~~~~s-~la~~ad~~~~~~~i~~~ag 153 (372)
T TIGR02815 109 VAAVELADQLLPECYHLVLTCNEEG-ALYRNAINRSNAFALLMPAE 153 (372)
T ss_pred HHHHHHHHHhCCCCcEEEEEcCCCC-HHHHhhcccCceeEEEccCC
Confidence 9999999998 8999999999999 9999999 77777654
No 46
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.51 E-value=2.3e-13 Score=114.42 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=87.1
Q ss_pred HHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcC--CeEEEecCC-CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcC
Q 028777 42 LTNTATQKGSVFLYGVGREGLMLKALCMRLAHLG--ISTHLVFDM-TTPPISSNDLLIASAGPGGFSTVDAICSRARSYG 118 (204)
Q Consensus 42 ~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg--~~~~~~~d~-~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g 118 (204)
+.+.+..+++|+++|.|.|..+|+++.+.|...+ +++....|. ....++++|++|++|.||+|.+++.+++.|+++|
T Consensus 14 ~~~~~~~~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~~d~~l~~~~~~~dlvI~iS~SG~t~e~~~a~~~A~~~g 93 (308)
T TIGR02128 14 IDEILKIYDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVVKDYRLPRFVDGKTLLIAVSYSGNTEETLSAVEEAKKKG 93 (308)
T ss_pred HHHHHhcCCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEEcCccccccCCCCeEEEEEcCCCCCHHHHHHHHHHHHcC
Confidence 3344555899999999999999999999999885 588877763 3455689999999999999999999999999999
Q ss_pred CeEEEEecCCCCcchhhcc----CeEEEeCCc
Q 028777 119 ARVLLLTAQPESGSSVKHA----SVVAYVPAQ 146 (204)
Q Consensus 119 ~~vI~iT~~~~s~~l~~~a----d~~l~~~~~ 146 (204)
+++|+||+ ++ +|++.| +..+.+|..
T Consensus 94 ~~ii~iT~--~g-~L~~~a~~~~~~~i~vP~~ 122 (308)
T TIGR02128 94 AKVIAITS--GG-RLEEMAKERGLDVIKIPKG 122 (308)
T ss_pred CEEEEECC--Cc-HHHHHHHhcCCeEEEcCCC
Confidence 99999996 46 899998 788888764
No 47
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=99.44 E-value=1.5e-12 Score=99.52 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhc---CCcEEEEecchhHH---HHHHHHHHHhhcCCeEEEec--C-----CCCCCC-CCCcEEEEEeC
Q 028777 35 LDIMVAELTNTATQ---KGSVFLYGVGREGL---MLKALCMRLAHLGISTHLVF--D-----MTTPPI-SSNDLLIASAG 100 (204)
Q Consensus 35 ~~~~l~~~~~~i~~---a~~I~i~G~G~S~~---~a~~~~~~l~~lg~~~~~~~--d-----~~~~~~-~~~DlvI~iS~ 100 (204)
..+.++++++.+.+ .++|+++|.|.|.. ++.++..++.+.++++.++. | .....+ .++|++|++|.
T Consensus 3 ~~~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSk 82 (158)
T cd05015 3 ELERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISK 82 (158)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEEC
Confidence 34578888888875 79999999999998 77777777776777765543 3 112233 48999999999
Q ss_pred CCCCHHHHHHHHHHHH---------cCCeEEEEecCCCCcchhhccC
Q 028777 101 PGGFSTVDAICSRARS---------YGARVLLLTAQPESGSSVKHAS 138 (204)
Q Consensus 101 sG~t~~~~~~~~~ak~---------~g~~vI~iT~~~~s~~l~~~ad 138 (204)
||.|.|++..++.+++ .|.++|+||+ +++ ++.+.++
T Consensus 83 SG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~-~~s-~l~~~a~ 127 (158)
T cd05015 83 SGTTLETLANARLAREWLEEAGGDDLAKHFVAITD-NGS-GLLKKAG 127 (158)
T ss_pred CcCCHHHHHHHHHHHHHHHHhccccccceEEEEcC-CCh-HHHHHcC
Confidence 9999999999999999 8999999998 677 8887666
No 48
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=99.40 E-value=2.3e-12 Score=103.59 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh-hcCCeEEE----e--------------cC--------C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA-HLGISTHL----V--------------FD--------M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~----~--------------~d--------~ 84 (204)
.+++...++.+++.+.+.+|++..|.|.|+.++-.=+..+- .+|.+-.. + .| .
T Consensus 43 lp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~avEGaED~~~~g~~dl 122 (298)
T COG2103 43 LPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKAVEGAEDDEELGEADL 122 (298)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHHhhcCccccHHHHHHHH
Confidence 34667789999999999999999999999987754333332 23332111 1 01 3
Q ss_pred CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCcc
Q 028777 85 TTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLM 164 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (204)
....++++||||.|+.||.|+.++.++++|+++|+++|+|++|++| ++.+.+|+.|...+..+...+. +..
T Consensus 123 ~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s-~i~~~Ad~~I~~~vGPEvltGS--------TRl 193 (298)
T COG2103 123 KNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGS-AISRIADIAIEPVVGPEVLTGS--------TRL 193 (298)
T ss_pred HHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCc-hhhhhcCcceeeccCccccccc--------ccc
Confidence 4467899999999999999999999999999999999999999999 9999999999887766654331 222
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHhCC
Q 028777 165 PMGSVYEGAMFVLFEMVVYKLGEALGQ 191 (204)
Q Consensus 165 ~~~s~~~~~~~~~ld~L~~~l~~~~g~ 191 (204)
..+ ++.-+++.+|....|-+.|.
T Consensus 194 KaG----TAQKlvLNMlST~~Mi~lGK 216 (298)
T COG2103 194 KAG----TAQKLVLNMLSTGVMIKLGK 216 (298)
T ss_pred ccc----hHHHHHHHHHHHHHHHHhcc
Confidence 222 24567778888777777664
No 49
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.28 E-value=3.5e-11 Score=110.55 Aligned_cols=137 Identities=12% Similarity=0.185 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCC-eEEEecC--CC---CCCCC--CCcEEEEEeCCCC-CHHH
Q 028777 37 IMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGI-STHLVFD--MT---TPPIS--SNDLLIASAGPGG-FSTV 107 (204)
Q Consensus 37 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~-~~~~~~d--~~---~~~~~--~~DlvI~iS~sG~-t~~~ 107 (204)
+.++++++.+.++++++++|.|.+..+|.+++.||..++. ++..+.. +. ...++ +++.+|+++.+|. ++.+
T Consensus 484 ~~~~~~a~~l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~~~~~~~VI~i~~~~~~~~~~ 563 (640)
T PTZ00295 484 EQCKRIAEKLKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTPVILIILDDEHKELM 563 (640)
T ss_pred HHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhcCCCCCeEEEEEcCCccHHHH
Confidence 3789999999999999999999999999999999999876 5554443 11 12345 7899999999988 7789
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHH
Q 028777 108 DAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGE 187 (204)
Q Consensus 108 ~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~ 187 (204)
.+.++.++++|+++|+||+.. + ++.+.+|.++.++.. +. +.|+ ...+.++.+...++.
T Consensus 564 ~~~~~~lk~rga~vi~It~~~-~-~l~~~ad~~i~ip~~-~~-------------l~p~------~~~ip~Qllay~la~ 621 (640)
T PTZ00295 564 INAAEQVKARGAYIIVITDDE-D-LVKDFADEIILIPSN-GP-------------LTAL------LAVIPLQLLAYEIAI 621 (640)
T ss_pred HHHHHHHHHcCCEEEEEecCC-c-cccccCCeEEEeCCc-cc-------------chHH------HHHHHHHHHHHHHHH
Confidence 999999999999999999875 5 688999999988763 11 1232 256778999999999
Q ss_pred HhCCChHH
Q 028777 188 ALGQSPEA 195 (204)
Q Consensus 188 ~~g~~~~~ 195 (204)
.+|..|+.
T Consensus 622 ~~G~dpD~ 629 (640)
T PTZ00295 622 LRGINPDK 629 (640)
T ss_pred HcCCCCCC
Confidence 99998774
No 50
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.06 E-value=2.2e-09 Score=93.67 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHH---HHHHHHhhcCCeEEEecCC--CCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLK---ALCMRLAHLGISTHLVFDM--TTPPISSNDLLIASAGPGGFSTVDAICS 112 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~---~~~~~l~~lg~~~~~~~d~--~~~~~~~~DlvI~iS~sG~t~~~~~~~~ 112 (204)
-++.....|++++|+.+.|+|.|+..|- .+...|..+...+...+|. ...++-.+|++|++|+||+|.+++-+++
T Consensus 344 Glk~~l~~irr~rRli~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsDflDR~~pifRdDvc~FvSqSGETaDtllaL~ 423 (670)
T KOG1268|consen 344 GLKDYLPEIRRCRRLIMVACGTSYHSALATRPILEELSEIPVSVELASDFLDRNTPIFRDDVCFFVSQSGETADTLLALR 423 (670)
T ss_pred CCcchhhhhhhccccEEEEecchHHHHHHHHHHHHHHhcCCeeeehhhhhHhcCCCceeccEEEEEecCCchHHHHHHHH
Confidence 4667788899999999999999886554 4445556666556666662 3345568999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccc
Q 028777 113 RARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTM 148 (204)
Q Consensus 113 ~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~ 148 (204)
+|+++|+-+|+||+.-+| .+++..+.-+++.+...
T Consensus 424 Yc~~~gAl~vGvtNtvGS-sIsR~thCGvHiNaGpE 458 (670)
T KOG1268|consen 424 YCKERGALTVGVTNTVGS-SISRETHCGVHINAGPE 458 (670)
T ss_pred HHHhcCceEEEeecccCc-ccccccccceeccCCCc
Confidence 999999999999999999 99999888777766544
No 51
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=98.58 E-value=7.5e-07 Score=77.79 Aligned_cols=105 Identities=20% Similarity=0.186 Sum_probs=75.1
Q ss_pred HHHHHHHHh---cCCcEEEEecchhHHHHHHHHHHHhh---cCCeEEEec--C------CCCCCCCCCcEEEEEeCCCCC
Q 028777 39 VAELTNTAT---QKGSVFLYGVGREGLMLKALCMRLAH---LGISTHLVF--D------MTTPPISSNDLLIASAGPGGF 104 (204)
Q Consensus 39 l~~~~~~i~---~a~~I~i~G~G~S~~~a~~~~~~l~~---lg~~~~~~~--d------~~~~~~~~~DlvI~iS~sG~t 104 (204)
++++.+.+. +.+.|++.|+|+|..-++.+...|.. .+.+++++. | .....-.+++++|++|.||.|
T Consensus 45 i~e~~~~i~~~~~~~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT 124 (410)
T PRK03868 45 IEESLKFVKDKESIKNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTT 124 (410)
T ss_pred HHHHHHHHHhhCCCCEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCC
Confidence 556654554 57999999999999888877776642 234565444 2 111234588999999999999
Q ss_pred HHHHHHHHHHHHcC------C-eEEEEecCCCCcchhhccC----eEEEeCC
Q 028777 105 STVDAICSRARSYG------A-RVLLLTAQPESGSSVKHAS----VVAYVPA 145 (204)
Q Consensus 105 ~~~~~~~~~ak~~g------~-~vI~iT~~~~s~~l~~~ad----~~l~~~~ 145 (204)
.|++..++.+++.+ + .++++|+ +++ +|.+.|+ .++.+|.
T Consensus 125 ~ETl~~~~~~~~~~~~~~~~~~~~v~vTd-~~s-~L~~~a~~~g~~~f~ip~ 174 (410)
T PRK03868 125 IETISIFKYLLSHFKLDQELKKNFLFITD-PDS-KLEQFAKENNIKCFNIPK 174 (410)
T ss_pred HHHHHHHHHHHHHhccccccccEEEEEec-CCc-hHHHhHHhcCCcEEecCC
Confidence 99999999998873 3 4556665 677 8988887 3565554
No 52
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=98.52 E-value=6.5e-07 Score=68.24 Aligned_cols=131 Identities=12% Similarity=0.154 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHH---HHHhhcCCeEEEec-C-CCCCC
Q 028777 14 SQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALC---MRLAHLGISTHLVF-D-MTTPP 88 (204)
Q Consensus 14 ~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~---~~l~~lg~~~~~~~-d-~~~~~ 88 (204)
.-..-++...++++.+.+.+.+++..+-+++.+-.-++||++|.|-=..+.-... -+|.+ +..+. + .....
T Consensus 3 KIftTQL~Gif~rI~ekee~~iedaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~----~k~l~~~~~~~~~ 78 (172)
T PF10740_consen 3 KIFTTQLTGIFKRISEKEEESIEDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPS----AKRLSEDLENFDE 78 (172)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TT----EEE--TT------
T ss_pred hHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCch----hhcCccccccccc
Confidence 3445577788888866556667777777777777889999999998443322222 23322 22233 2 23456
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEe-cCCCCcchhhccCeEEEeCCccc
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLT-AQPESGSSVKHASVVAYVPAQTM 148 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT-~~~~s~~l~~~ad~~l~~~~~~~ 148 (204)
+++-|=|++||..-...+.++.++.+.+.|+++++|+ ..++..++.++||+.|......+
T Consensus 79 lt~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~ 139 (172)
T PF10740_consen 79 LTETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKLPKP 139 (172)
T ss_dssp --TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-SSS-EE----S-
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhhheeecccCCC
Confidence 8899999999999999999999999999999999999 33332289999999998865443
No 53
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=98.42 E-value=1.2e-06 Score=83.13 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhc--CCcEEEEecchhHHHHHHHHHHHhh-cCCeEE-EecCC----C---CCCC-CCCcEEEEEeCCCCC
Q 028777 37 IMVAELTNTATQ--KGSVFLYGVGREGLMLKALCMRLAH-LGISTH-LVFDM----T---TPPI-SSNDLLIASAGPGGF 104 (204)
Q Consensus 37 ~~l~~~~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~~-lg~~~~-~~~d~----~---~~~~-~~~DlvI~iS~sG~t 104 (204)
+.++++++.++. .++|+++|.|+|.+.++.+...|.. .+.+.. +++.. . ...+ .+++++|++|.||.|
T Consensus 441 ~~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT 520 (948)
T PRK09533 441 AEYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGT 520 (948)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCC
Confidence 366777888874 6899999999999888877766642 243333 22211 1 1112 278999999999999
Q ss_pred HHHHHHHHHHH---------HcCCeEEEEecCCCCcchhhccC
Q 028777 105 STVDAICSRAR---------SYGARVLLLTAQPESGSSVKHAS 138 (204)
Q Consensus 105 ~~~~~~~~~ak---------~~g~~vI~iT~~~~s~~l~~~ad 138 (204)
.|+..+.+.++ +.|.++|+||+ +++ +|.+.|+
T Consensus 521 ~ET~sa~~~~~~~l~~~~g~~~~~~~VaVTd-pgs-~L~~~A~ 561 (948)
T PRK09533 521 LEPNIFKDYFFARVKEVLGAKAGRHFVAVTD-PGS-SLEKVAK 561 (948)
T ss_pred HHHHHHHHHHHHHhhhhcccccCCeEEEEeC-CCC-hHHHHHH
Confidence 99999998776 34778999998 588 8988864
No 54
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=98.30 E-value=5.8e-06 Score=72.89 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc-----------CCeEEEecCC-------CCCCCC-CCcEEEE
Q 028777 37 IMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL-----------GISTHLVFDM-------TTPPIS-SNDLLIA 97 (204)
Q Consensus 37 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-----------g~~~~~~~d~-------~~~~~~-~~DlvI~ 97 (204)
+.++++.+.+++.+.|.++|.|.|.+-++-+..-|... +..+++.++. ....++ +++++|+
T Consensus 59 ~~~~~~~~~~~~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~l~~~~Tl~iv 138 (446)
T PRK00973 59 DSYEELKEWSKNFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDVIDLEKTLFNV 138 (446)
T ss_pred HHHHHHHHHhhcCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHhCCcccEEEEE
Confidence 35666665555678999999999998887776655421 1235454431 112234 6789999
Q ss_pred EeCCCCCHHHHHHHHHHHH--------cCCeEEEEecCCCCcchhhccC----eEEEeCC
Q 028777 98 SAGPGGFSTVDAICSRARS--------YGARVLLLTAQPESGSSVKHAS----VVAYVPA 145 (204)
Q Consensus 98 iS~sG~t~~~~~~~~~ak~--------~g~~vI~iT~~~~s~~l~~~ad----~~l~~~~ 145 (204)
+|.||.|.|+....+.+++ .+..+|++|+..+. +|.+.|+ -+|.+|.
T Consensus 139 iSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g-~L~~~A~~~g~~~f~ip~ 197 (446)
T PRK00973 139 ISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKG-KLKKIAEKEGYRTLEIPE 197 (446)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCcc-chHHHHHHcCCcEEeeCC
Confidence 9999999999998888776 45689999997676 7877776 2455554
No 55
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=98.27 E-value=9.1e-06 Score=72.80 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=76.0
Q ss_pred HHHHHHHHHhc----------CCcEEEEecchhHHHHHHHHHHHhhc--CCeEEEecC-------CCCCCC---CCCcEE
Q 028777 38 MVAELTNTATQ----------KGSVFLYGVGREGLMLKALCMRLAHL--GISTHLVFD-------MTTPPI---SSNDLL 95 (204)
Q Consensus 38 ~l~~~~~~i~~----------a~~I~i~G~G~S~~~a~~~~~~l~~l--g~~~~~~~d-------~~~~~~---~~~Dlv 95 (204)
.++++++.+++ .+.|.++|.|+|.+-.+.+..-|... +.++++++. .....+ .+++++
T Consensus 93 ~i~~fa~~i~~G~~~~~~g~~~~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~TLv 172 (528)
T PRK14096 93 QIEAFAAKVHSGTIKPPNGEKFTDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDRVLAELGDRLATTLV 172 (528)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHHHHHHhcCCCCcEEE
Confidence 45567777774 67899999999998887777766542 345555543 112223 378999
Q ss_pred EEEeCCCCCHHHHHHHHHHHH----cC----CeEEEEecCCCCcchhhccC-----eEEEeCC
Q 028777 96 IASAGPGGFSTVDAICSRARS----YG----ARVLLLTAQPESGSSVKHAS-----VVAYVPA 145 (204)
Q Consensus 96 I~iS~sG~t~~~~~~~~~ak~----~g----~~vI~iT~~~~s~~l~~~ad-----~~l~~~~ 145 (204)
|++|.||.|.|+...++.+++ +| ..+|+||+ +++ +|.++++ .+|..+.
T Consensus 173 iViSKSGtT~ET~~n~~~~~~~l~~~G~~~~~h~VAVT~-~~s-~L~~~A~~~g~~~~F~~~d 233 (528)
T PRK14096 173 VVISKSGGTPETRNGMLEAKAAYEAAGLDFASHAVAITM-KGS-KLDQLAQSEGWLARFPMWD 233 (528)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHhhcccccceEEEEEC-CCc-HHhhhccccCceeEeeCCC
Confidence 999999999999988885544 34 58999998 677 8999883 3555544
No 56
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=98.22 E-value=5.8e-05 Score=69.30 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcC-CeEEEec--CCC---CCCCCCCcEEEEEeCCCCC-HHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLG-ISTHLVF--DMT---TPPISSNDLLIASAGPGGF-STVDAI 110 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg-~~~~~~~--d~~---~~~~~~~DlvI~iS~sG~t-~~~~~~ 110 (204)
.++++++.+.+.+++++.|.|....+|.+.+.+|..+. +++..+. ++. ...+++++.+|++...|.+ ....++
T Consensus 452 ~~~~~a~~l~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~ 531 (607)
T TIGR01135 452 SIAELAERYADKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSN 531 (607)
T ss_pred HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCCCEEEEEeCchHHHHHHHH
Confidence 68888999999999999999999999999999997543 3444332 322 2345788888888877764 556788
Q ss_pred HHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q 028777 111 CSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 111 ~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g 190 (204)
++.++++|.+++.|++.+.. .....+|..+.+|...+ .+.|+ ...+.++.+...++..+|
T Consensus 532 ~~~~~~~g~~v~~I~~~~~~-~~~~~~~~~i~~p~~~~-------------~l~pl------~~~~p~Qlla~~~A~~~G 591 (607)
T TIGR01135 532 VEEVKARGARVIVFADEDDE-FLESVADDVIKLPEVEE-------------LLAPI------VYTVPLQLLAYHIALAKG 591 (607)
T ss_pred HHHHHHcCCeEEEEECCCcc-cccccCCcEEECCCCCc-------------cchHH------HHHHHHHHHHHHHHHHcC
Confidence 99999999999999976533 23345677777764211 12222 346778999999999999
Q ss_pred CChHH
Q 028777 191 QSPEA 195 (204)
Q Consensus 191 ~~~~~ 195 (204)
..|+.
T Consensus 592 ~dpd~ 596 (607)
T TIGR01135 592 TDVDK 596 (607)
T ss_pred CCCCC
Confidence 99874
No 57
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.20 E-value=4.1e-05 Score=71.03 Aligned_cols=138 Identities=14% Similarity=0.215 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc-CCeEEEe--cCCCC---CCCCCCcEEEEEeCCCCC-HHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL-GISTHLV--FDMTT---PPISSNDLLIASAGPGGF-STVDAI 110 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~--~d~~~---~~~~~~DlvI~iS~sG~t-~~~~~~ 110 (204)
.++++++.+.+++++++.|.|....+|.+.+.||..+ .+++..+ .++.. ..++++..+|++...+.+ .....+
T Consensus 515 ~~~~~a~~l~~~~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~~ 594 (670)
T PTZ00394 515 PVKALAARLKESSSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSA 594 (670)
T ss_pred HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHHH
Confidence 6788899999999999999999999999999998754 2233322 22222 345778888888776665 456778
Q ss_pred HHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q 028777 111 CSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 111 ~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g 190 (204)
++..+.+|.+++.||..... .+....+..+.+|...+ .+.|+ ...+.++++...++..+|
T Consensus 595 ~~evk~~g~~vi~I~~~~~~-~~~~~~~~~i~vp~~~~-------------~l~pl------l~~iplQllAy~~A~~rG 654 (670)
T PTZ00394 595 VQQVKARGGAVVVFATEVDA-ELKAAASEIVLVPKTVD-------------CLQCV------VNVIPFQLLAYYMALLRG 654 (670)
T ss_pred HHHHHHcCCeEEEEECCCcc-hhcccCCcEEECCCCch-------------hHhHH------HHHHHHHHHHHHHHHHcC
Confidence 99999999999999987554 45566777888875221 12231 245678999999999999
Q ss_pred CChHH
Q 028777 191 QSPEA 195 (204)
Q Consensus 191 ~~~~~ 195 (204)
..|++
T Consensus 655 ~dpD~ 659 (670)
T PTZ00394 655 NNVDC 659 (670)
T ss_pred CCCCC
Confidence 98774
No 58
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=98.08 E-value=4.4e-05 Score=68.57 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhc----------CCcEEEEecchhHHHHHHHHHHHh---hcCCeEEEecC-------CCCCCC-CCCcEE
Q 028777 37 IMVAELTNTATQ----------KGSVFLYGVGREGLMLKALCMRLA---HLGISTHLVFD-------MTTPPI-SSNDLL 95 (204)
Q Consensus 37 ~~l~~~~~~i~~----------a~~I~i~G~G~S~~~a~~~~~~l~---~lg~~~~~~~d-------~~~~~~-~~~Dlv 95 (204)
+.++++++.+++ .+.|+.+|+|+|.+-.+.+..-|. .-+.++++++. .....+ .+.+++
T Consensus 129 ~~~~~f~~~vr~g~~~g~tg~~~~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLf 208 (533)
T PRK14095 129 ERLAEFLKKVRSGEIKNSNGKKFTTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTLF 208 (533)
T ss_pred HHHHHHHHHHHcCCccCCCCCccceEEEEecCcchHhHHHHHHHHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEEE
Confidence 355666777764 578999999999854443333332 22345555543 111112 368999
Q ss_pred EEEeCCCCCHHHHHHHHH----HHHcC----CeEEEEecCCCCcchhhccCe
Q 028777 96 IASAGPGGFSTVDAICSR----ARSYG----ARVLLLTAQPESGSSVKHASV 139 (204)
Q Consensus 96 I~iS~sG~t~~~~~~~~~----ak~~g----~~vI~iT~~~~s~~l~~~ad~ 139 (204)
|++|.||.|.|++..++. +++.| ..+|++|+ +++ ++++..++
T Consensus 209 iviSKSGtT~ETl~n~~~~r~wl~~~G~~~~~h~VaVT~-~~s-~l~~~~~~ 258 (533)
T PRK14095 209 IVVSKSGTTLETAANEEFVRDALKKAGLDYKKHFIAVTS-EGS-PMDDESGY 258 (533)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHcCccccceEEEEEC-Cch-HHHhhcCc
Confidence 999999999999998444 44455 58999998 666 78887665
No 59
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.04 E-value=0.00025 Score=65.12 Aligned_cols=137 Identities=17% Similarity=0.241 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc-CCeEEEec--CCCC---CCCCCCcEEEEEeCCCCC-HHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL-GISTHLVF--DMTT---PPISSNDLLIASAGPGGF-STVDAI 110 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~--d~~~---~~~~~~DlvI~iS~sG~t-~~~~~~ 110 (204)
.++++++.+...+++++.|.|....+|...+.+|..+ .+++..+. ++.. ..++++..+|++...|.+ ..+.++
T Consensus 450 ~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~ 529 (604)
T PRK00331 450 QIEELAEDFADARNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEKTKSN 529 (604)
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCCceEEEEEcCchHHHHHHHH
Confidence 7888999999999999999999999999999999754 34444332 3222 345778888888877764 445678
Q ss_pred HHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q 028777 111 CSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 111 ~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g 190 (204)
++..+++|.+++.||+.. . .+....|..+.+|.... .+.|+ ...+.++.+...++..+|
T Consensus 530 ~~~~~~~g~~v~~I~~~~-~-~~~~~~~~~~~~~~~~~-------------~~~pl------~~~ip~Qlla~~~A~~~G 588 (604)
T PRK00331 530 IQEVKARGARVIVIADEG-D-EVAEEADDVIEVPEVHE-------------LLAPL------LYVVPLQLLAYHVALARG 588 (604)
T ss_pred HHHHHhCCCEEEEEEcCC-c-cccccCCceEECCCCcc-------------chhHH------HHHHHHHHHHHHHHHHcC
Confidence 888999999999999753 2 23455677777764211 11221 245678999999999999
Q ss_pred CChHH
Q 028777 191 QSPEA 195 (204)
Q Consensus 191 ~~~~~ 195 (204)
..|+.
T Consensus 589 ~~pd~ 593 (604)
T PRK00331 589 TDVDK 593 (604)
T ss_pred CCCCC
Confidence 99874
No 60
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=0.00051 Score=62.23 Aligned_cols=152 Identities=14% Similarity=0.257 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCC-e--EEEecCCC---CC
Q 028777 14 SQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGI-S--THLVFDMT---TP 87 (204)
Q Consensus 14 ~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~-~--~~~~~d~~---~~ 87 (204)
+..-+.+.+++. .++ .+.++++.+.+++++++.|.|....+|.+.+.||..+-. + .+...++. ..
T Consensus 429 ~~lp~~i~~~l~--~~~-------~i~~~a~~l~~~~~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiA 499 (597)
T COG0449 429 QKLPNHIPKVLA--AEE-------KIKELAKRLADAKDFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIA 499 (597)
T ss_pred HHHHHHHHHHHh--cCH-------HHHHHHHHhcccCCEEEEcCCCCcHhHhhhhhhhhhheeeccccccchhhccCceE
Confidence 345556666666 333 889999999999999999999999999999999986521 1 11222222 23
Q ss_pred CCCCCcEEEEEeCCCC-CHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCcccc
Q 028777 88 PISSNDLLIASAGPGG-FSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPM 166 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~-t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (204)
.++++.-+|++...+. ...+...++..+.+|++++.|++... .+...|..+..|..... +.|+
T Consensus 500 Lid~~~pVi~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~---~~~~~~~~i~~p~~~e~-------------laPi 563 (597)
T COG0449 500 LIDENTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGD---VAEDGDDLILLPEVDEL-------------LAPL 563 (597)
T ss_pred EEcCCCcEEEEeCcchHHHHHHHHHHHHHcCCCeEEEEecCCc---ccccCceEEecCCCcch-------------hhhH
Confidence 4689999999999995 68889999999999999999997653 23556777766653322 2342
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCChHHH
Q 028777 167 GSVYEGAMFVLFEMVVYKLGEALGQSPEAV 196 (204)
Q Consensus 167 ~s~~~~~~~~~ld~L~~~l~~~~g~~~~~~ 196 (204)
...+-+++|...++..+|..+++-
T Consensus 564 ------~~~iPlQLLAY~iA~~kG~dvD~P 587 (597)
T COG0449 564 ------LYTIPLQLLAYHIALAKGIDVDKP 587 (597)
T ss_pred ------HHHHHHHHHHHHHHHHcCCCCCCC
Confidence 245678999999999999987643
No 61
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.84 E-value=0.00076 Score=62.85 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcC-CeEE--EecCCCC---CCCCCCcEEEEEeCCCC-CHHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLG-ISTH--LVFDMTT---PPISSNDLLIASAGPGG-FSTVDAI 110 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg-~~~~--~~~d~~~---~~~~~~DlvI~iS~sG~-t~~~~~~ 110 (204)
.++++++.+...+++++.|.|....+|.+.+.+|..+- +++. ...++.. ..++++..+|++...+. .....++
T Consensus 523 ~~~~~a~~l~~~~~~~~lG~G~~yg~A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~l~~~~~~~~~~~~~ 602 (680)
T PLN02981 523 EMKELAELLIDEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIVIATRDACFSKQQSV 602 (680)
T ss_pred HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEEEEcCCchHHHHHHH
Confidence 68888999999999999999999999999999887542 2332 2233222 34678888888876665 4567789
Q ss_pred HHHHHHcCCeEEEEecCCCCcch--hhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Q 028777 111 CSRARSYGARVLLLTAQPESGSS--VKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEA 188 (204)
Q Consensus 111 ~~~ak~~g~~vI~iT~~~~s~~l--~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~ 188 (204)
++.++.+|.++++|++.... .. ....|..+.+|.... .+.|+ ...+.+++|...++..
T Consensus 603 ~~el~~~g~~vi~I~~~~~~-~~~~~~~~~~~i~~p~~~~-------------~l~pl------l~iiplQllAy~~A~~ 662 (680)
T PLN02981 603 IQQLRARKGRLIVICSKGDA-SSVCPSGGCRVIEVPQVED-------------CLQPV------INIVPLQLLAYHLTVL 662 (680)
T ss_pred HHHHHHcCCEEEEEEcCCcc-hhccccCCCeEEEEeccch-------------HHhHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999986432 11 133456666664211 12221 2456789999999999
Q ss_pred hCCChHH
Q 028777 189 LGQSPEA 195 (204)
Q Consensus 189 ~g~~~~~ 195 (204)
+|.+|+.
T Consensus 663 ~G~dpD~ 669 (680)
T PLN02981 663 RGHNVDQ 669 (680)
T ss_pred hCCCCCC
Confidence 9999874
No 62
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00022 Score=62.88 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=72.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCC---eEEEecC-------CCCCCCC-CCcEEEEEeCCCCCHHHHHHHHHHHHc
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGI---STHLVFD-------MTTPPIS-SNDLLIASAGPGGFSTVDAICSRARSY 117 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~---~~~~~~d-------~~~~~~~-~~DlvI~iS~sG~t~~~~~~~~~ak~~ 117 (204)
...|+.+|.|+|.+.++.+...|..... +++++.+ .....++ +..+++++|.||.|.|++..++.+++.
T Consensus 79 ~~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~ 158 (446)
T COG0166 79 ITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKW 158 (446)
T ss_pred cceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHH
Confidence 7889999999999999998888876544 5777665 1122333 458999999999999999999999987
Q ss_pred C-------CeEEEEecCCCCcchhhccC----eEEEeCC
Q 028777 118 G-------ARVLLLTAQPESGSSVKHAS----VVAYVPA 145 (204)
Q Consensus 118 g-------~~vI~iT~~~~s~~l~~~ad----~~l~~~~ 145 (204)
. .+..+.|+...+ .+++.++ -+|.+|.
T Consensus 159 ~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~f~ipd 196 (446)
T COG0166 159 LEKKEEAAKKHFVATSTNGG-ALAVLAGENGLETFEIPD 196 (446)
T ss_pred HHhhhhhhhcEEEEEcCCch-HHHHhcCCCceeEEECCC
Confidence 6 456666666666 7875553 4666665
No 63
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.58 E-value=0.00098 Score=59.07 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=69.9
Q ss_pred HHHHHHHHHh-cCCcEEEEecchhHHHHHHHHHHHhh----c-------CCeEEEecC--------CCCCCC-CCCcEEE
Q 028777 38 MVAELTNTAT-QKGSVFLYGVGREGLMLKALCMRLAH----L-------GISTHLVFD--------MTTPPI-SSNDLLI 96 (204)
Q Consensus 38 ~l~~~~~~i~-~a~~I~i~G~G~S~~~a~~~~~~l~~----l-------g~~~~~~~d--------~~~~~~-~~~DlvI 96 (204)
.++++++.++ +.+.|.++|.|+|.+-++-+..-|.. . +.+.+++.| .....+ .++++++
T Consensus 61 ~i~~~~~~~~~~~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~~l~~~~tl~i 140 (448)
T PRK14097 61 RIKKAAEKIKSDSDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLEYLKDKDFSIN 140 (448)
T ss_pred HHHHHHHHHhcCCCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHhhCCCCcEEEE
Confidence 3344555555 35899999999998777665554432 1 234544433 111222 3789999
Q ss_pred EEeCCCCCHHHHHHHHHHHH-----cCC-----eEEEEecCCCCcchhhccC----eEEEeCC
Q 028777 97 ASAGPGGFSTVDAICSRARS-----YGA-----RVLLLTAQPESGSSVKHAS----VVAYVPA 145 (204)
Q Consensus 97 ~iS~sG~t~~~~~~~~~ak~-----~g~-----~vI~iT~~~~s~~l~~~ad----~~l~~~~ 145 (204)
++|.||.|.|+...++.+++ .|. .++++|+.... .|.+.++ .+|.+|.
T Consensus 141 ViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~-~L~~~a~~~g~~~f~ip~ 202 (448)
T PRK14097 141 VISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKG-ALKTLADAEGYETFVIPD 202 (448)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCch-HhhccchhcCcCEEeCCC
Confidence 99999999999888866542 131 37888877665 6888877 3666654
No 64
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=97.49 E-value=0.0018 Score=49.03 Aligned_cols=125 Identities=11% Similarity=0.169 Sum_probs=83.6
Q ss_pred EEEEecchhHHHHHHHHHHHhhcC---CeEEEec--CCCC---CCCCCCcEEEEEeCCCCCHH--HHHHHHHHHHc--CC
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLG---ISTHLVF--DMTT---PPISSNDLLIASAGPGGFST--VDAICSRARSY--GA 119 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg---~~~~~~~--d~~~---~~~~~~DlvI~iS~sG~t~~--~~~~~~~ak~~--g~ 119 (204)
|++.|.|....+|.+.+.||..+- +++...+ ++.. ..++++..+|++...+.+.+ ..++++..+++ |.
T Consensus 1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence 589999999999999999998753 3555443 2222 34678888888887777643 45888998998 89
Q ss_pred eEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhCCChHH
Q 028777 120 RVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEA 195 (204)
Q Consensus 120 ~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~~~ 195 (204)
+++.|+..... .....+|+.+....... ..+.|+ ...+.+.++...++..+|..|+.
T Consensus 81 ~vi~i~~~~~~-~~~~~~~~~l~~~~~~~------------~~l~p~------~~iip~Qlla~~~A~~~G~dpD~ 137 (151)
T cd05010 81 RVIAISPESDA-GIEDNSHYYLPGSRDLD------------DVYLAF------PYILYAQLFALFNSIALGLTPDN 137 (151)
T ss_pred eEEEEEcCCcc-ccccccceeecccCCcc------------cHHHHH------HHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999875322 23333444322211111 011221 24567799999999999998764
No 65
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=97.37 E-value=0.0043 Score=53.09 Aligned_cols=131 Identities=14% Similarity=0.210 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc-CCeEEEecC--CC---CCCCCCCcEEEEEeCCCCCHHH-HHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL-GISTHLVFD--MT---TPPISSNDLLIASAGPGGFSTV-DAI 110 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~d--~~---~~~~~~~DlvI~iS~sG~t~~~-~~~ 110 (204)
..++++....+.++||+.|.|..+.+|...+.+|..+ ++++..+.. .. ...++++..||++-..+++++. .++
T Consensus 190 ~~~~~~~~~~~~~~i~~lGsG~~~g~A~e~aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~ 269 (340)
T COG2222 190 DAQEFAEEYADEDRIYTLGSGPLYGAAYEAALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERA 269 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCcccHHHHHHHHHHHHHHccccceeeeccccccCcHHHcCCCceEEEEecCCcchhHHHHH
Confidence 5556778888999999999999999999999998743 445555543 21 2346889999998889998887 566
Q ss_pred HHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q 028777 111 CSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 111 ~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g 190 (204)
++.++++|++++.|-..+ - .+..+..... .++... .....+++.+...+...+|
T Consensus 270 ~~~~~~~ga~v~vi~a~~-~---------~~~~~~~~~~--------------~~l~~~--~~~~~v~~~~~~~~a~~rg 323 (340)
T COG2222 270 LKFLKNYGAKVLVIDAKD-A---------ALDLIDQRVR--------------HDLAPP--LLSLVVAQRLAYALAVARG 323 (340)
T ss_pred HHHHHhcCCeEEEEcCcc-c---------ccCCCCcccc--------------chhHHH--HHHHHHHHHHHHHHHHhcC
Confidence 788999999999887543 1 1111211100 111111 1244788999999999999
Q ss_pred CChH
Q 028777 191 QSPE 194 (204)
Q Consensus 191 ~~~~ 194 (204)
.+|+
T Consensus 324 ~~pd 327 (340)
T COG2222 324 HNPD 327 (340)
T ss_pred CCCC
Confidence 9876
No 66
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=97.34 E-value=0.0067 Score=51.90 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=87.3
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHH-HHHHHHHhhc-CCeEEEec--CCCC---CCCCCCcEEEEEeCCCCCH-HHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLML-KALCMRLAHL-GISTHLVF--DMTT---PPISSNDLLIASAGPGGFS-TVDA 109 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a-~~~~~~l~~l-g~~~~~~~--d~~~---~~~~~~DlvI~iS~sG~t~-~~~~ 109 (204)
..+++++.+...+++++.|.|.....| .+...+|..+ .+++..+. ++.. ..++++..+|++...|.++ ...+
T Consensus 197 ~~~~~a~~~~~~~~~~~lG~G~~y~~A~~E~alKl~E~~~i~a~~~~~~Ef~HGP~~li~~~~~vi~l~~~~~~~~~~~~ 276 (340)
T PRK11382 197 KGRQLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTER 276 (340)
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCHHHHHHHHHHHHHHHhhhhcccccHHHhccChHHHhcCCceEEEEEcCcchHHHHHH
Confidence 567777888889999999999999887 7888888743 33444332 2222 3457788777777778665 5678
Q ss_pred HHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHh
Q 028777 110 ICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEAL 189 (204)
Q Consensus 110 ~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~ 189 (204)
+++.++++|.+++.|+.. .+ +.... ..+.|+ ...+.++.+...++..+
T Consensus 277 ~~~~l~~~~~~v~~I~~~----~~----------~~~~~------------~~l~pl------~~~ip~Qlla~~lA~~r 324 (340)
T PRK11382 277 AINFVKQRTDNVIVIDYA----EI----------SQGLH------------PWLAPF------LMFVPMEWLCYYLSIYK 324 (340)
T ss_pred HHHHHHHCCCeEEEEECC----CC----------CCCcc------------hhHhHH------HHHHHHHHHHHHHHHHh
Confidence 888899999999999732 10 11000 012332 24467799999999999
Q ss_pred CCChHH
Q 028777 190 GQSPEA 195 (204)
Q Consensus 190 g~~~~~ 195 (204)
|+.|+.
T Consensus 325 G~d~d~ 330 (340)
T PRK11382 325 DHNPDE 330 (340)
T ss_pred CcCCCC
Confidence 999874
No 67
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=97.25 E-value=0.0042 Score=56.29 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhc----------CCcEEEEecchhHHHHHHHHHHHhhc---CCeEEEecC-------CCCCCC-CCCcEE
Q 028777 37 IMVAELTNTATQ----------KGSVFLYGVGREGLMLKALCMRLAHL---GISTHLVFD-------MTTPPI-SSNDLL 95 (204)
Q Consensus 37 ~~l~~~~~~i~~----------a~~I~i~G~G~S~~~a~~~~~~l~~l---g~~~~~~~d-------~~~~~~-~~~Dlv 95 (204)
+.++++++.+++ .+.|.++|.|+|.+-.+-+..-|... +.+++++++ .....+ .+.+++
T Consensus 123 ~~~~~f~~~i~~g~~~g~~g~~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~ 202 (548)
T PRK00179 123 ARMKAFAEAVRSGEWKGYTGKAITDVVNIGIGGSDLGPVMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPETTLF 202 (548)
T ss_pred HHHHHHHHHHHhCCccCCCCCccCeEEEECCCcchHHHHHHHHHhhhhccCCCceEEEeCCCHHHHHHHHhcCCcccEEE
Confidence 456667777774 46899999999998777766666432 334565543 111222 367999
Q ss_pred EEEeCCCCCHHHHHHHHHHHH----c-------CCeEEEEecCCCCcchhhccC---eEEEeCC
Q 028777 96 IASAGPGGFSTVDAICSRARS----Y-------GARVLLLTAQPESGSSVKHAS---VVAYVPA 145 (204)
Q Consensus 96 I~iS~sG~t~~~~~~~~~ak~----~-------g~~vI~iT~~~~s~~l~~~ad---~~l~~~~ 145 (204)
|++|.||.|.|+...++.+++ . +-..|+||++.+ ++.+..- .+|.++.
T Consensus 203 iViSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vaVT~~~~--~~~~~g~~~~~~F~~~d 264 (548)
T PRK00179 203 IVASKTFTTQETLTNAHSARDWFLAAGGDEAAVAKHFVAVSTNAE--AVAEFGIDPDNMFGFWD 264 (548)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCccccccceEEEEcCCcH--HHHHcCCchhcEEECCC
Confidence 999999999999865554432 2 224789897644 4655432 3676664
No 68
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=97.23 E-value=0.03 Score=48.58 Aligned_cols=139 Identities=12% Similarity=0.142 Sum_probs=91.1
Q ss_pred HHHHHHHHHh--cCCcEEEEecchhHHHHHHHHHHHhhcC-Ce--EEEec--CCCC---CCCCCCcEEEEEeCCCCC-HH
Q 028777 38 MVAELTNTAT--QKGSVFLYGVGREGLMLKALCMRLAHLG-IS--THLVF--DMTT---PPISSNDLLIASAGPGGF-ST 106 (204)
Q Consensus 38 ~l~~~~~~i~--~a~~I~i~G~G~S~~~a~~~~~~l~~lg-~~--~~~~~--d~~~---~~~~~~DlvI~iS~sG~t-~~ 106 (204)
.+...++.+. +.+++++.|.|....+|.+.+.||..+- .. +.... ++.. ..++++..+|++...+.. +.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~lGrG~~y~~A~E~ALKlkE~~~~~~~~~~~~~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~ 280 (372)
T TIGR02815 201 QWDFSEGVLGYAPWERIVYLGSGGLQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVSSDPYTRQ 280 (372)
T ss_pred HHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHHHHHHHHHHheeeccccccccChHHHhcCCCeEEEEEcCchhhhh
Confidence 4555666654 8899999999999999999999998665 22 33322 3222 346788888888877763 22
Q ss_pred H-HHHHHHHHHcC--CeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHH
Q 028777 107 V-DAICSRARSYG--ARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVY 183 (204)
Q Consensus 107 ~-~~~~~~ak~~g--~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~ 183 (204)
. .++++..+++| .+++.|++.. . ... ..+..+.++....... ...| ....+.+.++..
T Consensus 281 ~~~~~l~e~~~~g~~~~v~~I~~~~-~-~~~-~~~~~i~i~~~~~~~~----------~~~~------~~~vip~QllA~ 341 (372)
T TIGR02815 281 YDLDLLAELRRDNQAGRVVAISAES-S-DIV-AAGDHFILPPSRHFID----------VELA------FPYLIFAQTLAF 341 (372)
T ss_pred hhHHHHHHHHhcCCCceEEEEEcCC-c-ccc-cCCCEEEeCCCCCCch----------HHhH------HHHHHHHHHHHH
Confidence 2 47888888885 9999999753 2 222 2244566664311100 0011 124556899999
Q ss_pred HHHHHhCCChHH
Q 028777 184 KLGEALGQSPEA 195 (204)
Q Consensus 184 ~l~~~~g~~~~~ 195 (204)
.++..+|..|+.
T Consensus 342 ~~A~~~G~dpD~ 353 (372)
T TIGR02815 342 EQSLALGNTPDN 353 (372)
T ss_pred HHHHHCCCCCCC
Confidence 999999998764
No 69
>PLN02649 glucose-6-phosphate isomerase
Probab=97.07 E-value=0.0061 Score=55.39 Aligned_cols=106 Identities=9% Similarity=0.002 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhc----------CCcEEEEecchhHHHHHHHHHHHhhc--------CCeEEEecC-------CCCCCC-C
Q 028777 37 IMVAELTNTATQ----------KGSVFLYGVGREGLMLKALCMRLAHL--------GISTHLVFD-------MTTPPI-S 90 (204)
Q Consensus 37 ~~l~~~~~~i~~----------a~~I~i~G~G~S~~~a~~~~~~l~~l--------g~~~~~~~d-------~~~~~~-~ 90 (204)
+.++++++.+++ .+.|..+|.|+|.+-.+.+..-|... |.++++++. .....+ .
T Consensus 125 ~r~~~f~~~vr~g~~~g~tg~~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p 204 (560)
T PLN02649 125 DKIKAFSEDVRSGKWKGATGKRFTNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDP 204 (560)
T ss_pred HHHHHHHHHHHcCCcccCCCCccceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCc
Confidence 355666777764 46899999999987666665555432 224555442 112223 3
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH----c------CCeEEEEecCCCCcchhhccC----eEEEeCC
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARS----Y------GARVLLLTAQPESGSSVKHAS----VVAYVPA 145 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~----~------g~~vI~iT~~~~s~~l~~~ad----~~l~~~~ 145 (204)
+.+++|++|.||.|.|+...++.+++ . .-.+|+|| +++ ++.+.+. .+|.++.
T Consensus 205 ~~TL~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vavT--~~~-~l~~~a~~~~~~~F~~~d 270 (560)
T PLN02649 205 ETTLVVVVSKTFTTAETMLNARTVRKWLRDALGGLAVAKHMVAVS--TNL-LLVNKFGIDPWNAFPFWD 270 (560)
T ss_pred ccEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccccceEEEEC--CCh-HHHHHhCcCCccEEeCCC
Confidence 57999999999999999988877653 2 23488999 455 6776655 3566654
No 70
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=96.95 E-value=0.006 Score=54.69 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=63.0
Q ss_pred CcEEEEecchhHHHHHHHHHHHhhcC---CeEEEecC-------CCCCCCC-CCcEEEEEeCCCCCHHHHHHHHHHHHc-
Q 028777 50 GSVFLYGVGREGLMLKALCMRLAHLG---ISTHLVFD-------MTTPPIS-SNDLLIASAGPGGFSTVDAICSRARSY- 117 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~lg---~~~~~~~d-------~~~~~~~-~~DlvI~iS~sG~t~~~~~~~~~ak~~- 117 (204)
+.|.++|.|+|.+-.+-+..-|.... ..+++++. .....++ +.++++++|.||.|.|+...++.+++.
T Consensus 97 ~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n~~~~~~~l 176 (486)
T PF00342_consen 97 TDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTIETLANFRIAREWL 176 (486)
T ss_dssp SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHHHHHHHHHH
T ss_pred eEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 57999999999988887777776433 45666654 1223343 569999999999999999888777551
Q ss_pred ----------CCeEEEEecCCCCcchhhcc--CeEEEeCC
Q 028777 118 ----------GARVLLLTAQPESGSSVKHA--SVVAYVPA 145 (204)
Q Consensus 118 ----------g~~vI~iT~~~~s~~l~~~a--d~~l~~~~ 145 (204)
+-.+|++|++.+. .+.... +..|.++.
T Consensus 177 ~~~~~~~~~~~~h~vavT~~~~~-~~~~~~~~~~~f~~~d 215 (486)
T PF00342_consen 177 EKKGGDKEEAAKHFVAVTDNGSG-ALKFGIDEENIFPIPD 215 (486)
T ss_dssp HHHHHSGGGGGGTEEEEESSHHH-HHHHTHHGGGEEE--T
T ss_pred HhhcCccccccceEEEeCCCchH-HHHHHHHHhcceeccc
Confidence 3569999988665 443222 36777765
No 71
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=96.75 E-value=0.066 Score=42.23 Aligned_cols=113 Identities=6% Similarity=0.081 Sum_probs=67.2
Q ss_pred CCcEEEEecchhH-HHHHHHHHHHhhcCCeEEEecC----CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Q 028777 49 KGSVFLYGVGREG-LMLKALCMRLAHLGISTHLVFD----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 49 a~~I~i~G~G~S~-~~a~~~~~~l~~lg~~~~~~~d----~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 123 (204)
.++|.++|+.... .+.+.++.+.....+.-..++- +.......-|++|++....+. .+++.|...|+|||+
T Consensus 61 ~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~----~Av~EA~~l~IP~Ia 136 (196)
T TIGR01012 61 PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADH----QALKEASEVGIPIVA 136 (196)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcccc----HHHHHHHHcCCCEEE
Confidence 7899999987733 2333344443222111112221 222334556788887654444 356778999999999
Q ss_pred EecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhCC
Q 028777 124 LTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQ 191 (204)
Q Consensus 124 iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~ 191 (204)
|++.+.. | ++.|+.|+.-.+. . .+.-+++.+|...+...+|.
T Consensus 137 i~DTn~d-p--~~vdypIP~Ndds------------------~-----~Si~li~~lla~ail~~~g~ 178 (196)
T TIGR01012 137 LCDTDNP-L--RYVDLVIPTNNKG------------------R-----HSLALIYWLLAREILRMRGT 178 (196)
T ss_pred EeeCCCC-C--ccCCEEECCCCch------------------H-----HHHHHHHHHHHHHHHHhhCc
Confidence 9987665 3 5577777442211 1 13456778888888777764
No 72
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=96.71 E-value=0.057 Score=44.07 Aligned_cols=115 Identities=10% Similarity=0.061 Sum_probs=68.7
Q ss_pred HHHhcCCcEEEEecchhH-HHHHHHHHHHhhcCCeEEE---ec----CCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 028777 44 NTATQKGSVFLYGVGREG-LMLKALCMRLAHLGISTHL---VF----DMTTPPISSNDLLIASAGPGGFSTVDAICSRAR 115 (204)
Q Consensus 44 ~~i~~a~~I~i~G~G~S~-~~a~~~~~~l~~lg~~~~~---~~----d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak 115 (204)
..+.+.+.|.++|+...+ .+...++.+ .|-..+. ++ ++.......-|++|++....+.. +++.|.
T Consensus 66 ~~i~~~~~Il~Vstr~~~~~~V~k~A~~---tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~q----AI~EA~ 138 (249)
T PTZ00254 66 AAIENPADVVVVSSRPYGQRAVLKFAQY---TGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDHQ----AIREAS 138 (249)
T ss_pred HHHhCCCcEEEEEcCHHHHHHHHHHHHH---hCCeEECCcccCCCCCCccccccCCCCEEEEeCCCcchH----HHHHHH
Confidence 345578889999987732 233333333 3432221 11 12333445567888877544443 557788
Q ss_pred HcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHHHhCC
Q 028777 116 SYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQ 191 (204)
Q Consensus 116 ~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~ 191 (204)
..|+|||+|++.+.. + ++.|+.|++-.+. . .+.-+++.+|...+...+|.
T Consensus 139 ~lnIPvIal~DTds~--p-~~VDy~IP~Ndds------------------~-----~SI~li~~lLar~Vl~~rG~ 188 (249)
T PTZ00254 139 YVNIPVIALCDTDSP--L-EYVDIAIPCNNRG------------------K-----ESIALMYWLLAREVLRLRGT 188 (249)
T ss_pred HhCCCEEEEecCCCC--c-ccCceeeCCCCch------------------H-----HHHHHHHHHHHHHHHHhhCc
Confidence 889999999977554 3 5578777543211 1 12456778888888887774
No 73
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=96.54 E-value=0.16 Score=40.37 Aligned_cols=121 Identities=9% Similarity=0.114 Sum_probs=69.3
Q ss_pred HHHHHHHHHh--cCCcEEEEecchhH-HHHHHHHHHHhhcCCeEEE---ecC----CCCCCCCCCcEEEEEeCCCCCHHH
Q 028777 38 MVAELTNTAT--QKGSVFLYGVGREG-LMLKALCMRLAHLGISTHL---VFD----MTTPPISSNDLLIASAGPGGFSTV 107 (204)
Q Consensus 38 ~l~~~~~~i~--~a~~I~i~G~G~S~-~~a~~~~~~l~~lg~~~~~---~~d----~~~~~~~~~DlvI~iS~sG~t~~~ 107 (204)
.+..+++.+. +.++|.++|+.... .+.+.++.+ .|-..+. ++- +.......-|++|++....+.
T Consensus 54 ~L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~---~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~~--- 127 (204)
T PRK04020 54 RIRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEV---VGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDA--- 127 (204)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH---hCCeeecCccCCCcCcCcchhccCCCCEEEEECCcccH---
Confidence 3444444333 57889999887632 233333333 3332221 111 111122245888888876553
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHHH
Q 028777 108 DAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGE 187 (204)
Q Consensus 108 ~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~~ 187 (204)
.+++.|...|+|||+|++.+.. | ++.|+.|+.-.++ . .+.-+++.+|...+..
T Consensus 128 -~AI~EA~kl~IP~IaivDTn~d-p--~~VdypIP~Ndds------------------~-----~SI~li~~ll~~aIl~ 180 (204)
T PRK04020 128 -QAVKEAIEVGIPVVALCDTDNL-T--SNVDLVIPTNNKG------------------R-----KALALVYWLLAREILR 180 (204)
T ss_pred -HHHHHHHHhCCCEEEEEeCCCC-c--ccCceeECCCCch------------------H-----HHHHHHHHHHHHHHHH
Confidence 4567788899999999988766 4 5677777442211 1 1244567777777777
Q ss_pred HhCC
Q 028777 188 ALGQ 191 (204)
Q Consensus 188 ~~g~ 191 (204)
.+|.
T Consensus 181 ~kg~ 184 (204)
T PRK04020 181 ERGE 184 (204)
T ss_pred hhCc
Confidence 6654
No 74
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=96.43 E-value=0.02 Score=51.95 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=60.6
Q ss_pred HHHHHHHHHhc----------CCcEEEEecchhHHHHHHHHHHHhhc--------CCeEEEecC-------CCCCCC-CC
Q 028777 38 MVAELTNTATQ----------KGSVFLYGVGREGLMLKALCMRLAHL--------GISTHLVFD-------MTTPPI-SS 91 (204)
Q Consensus 38 ~l~~~~~~i~~----------a~~I~i~G~G~S~~~a~~~~~~l~~l--------g~~~~~~~d-------~~~~~~-~~ 91 (204)
.++++++.+++ .+.|..+|.|+|.+-.+-+..-|... +.++++++. .....+ .+
T Consensus 121 ~~~~f~~~v~~g~~~g~tg~~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ldp~ 200 (552)
T PTZ00430 121 RIKKFSDKIRSGEILGSTGKKLKNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPE 200 (552)
T ss_pred HHHHHHHHHHcCCccCCCCCeeceEEEEcCCccchHHHHHHHHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCCcc
Confidence 46667777764 46899999999987776666655422 245565542 111223 35
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH----c-------CCeEEEEecCC
Q 028777 92 NDLLIASAGPGGFSTVDAICSRARS----Y-------GARVLLLTAQP 128 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~ak~----~-------g~~vI~iT~~~ 128 (204)
.+++|++|.||.|.|+...++.+++ + +-..|+||++.
T Consensus 201 ~TLfiViSKSgtT~ETl~n~~~~r~wl~~~~~~~~~~~~h~vavT~~~ 248 (552)
T PTZ00430 201 ETLVVIISKTFTTAETMLNAKTVRQWLLDNIKSKEALSKHLCAVSTNL 248 (552)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccCeEEEEcCch
Confidence 7999999999999999866555433 1 12488999754
No 75
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=95.83 E-value=0.18 Score=46.36 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcC--CcEEEEecchhHHHHHHHHHHHh-hcCCeEEEe----cC--------------CC---CCCC
Q 028777 34 PLDIMVAELTNTATQK--GSVFLYGVGREGLMLKALCMRLA-HLGISTHLV----FD--------------MT---TPPI 89 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~----~d--------------~~---~~~~ 89 (204)
.-++.++.+++.+.+. +.+.+|+.|....-+.++..+|. .+|-+-... .. .. ...+
T Consensus 82 SWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di 161 (574)
T cd02767 82 SWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGKGTVSLEDF 161 (574)
T ss_pred cHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCCCCCCCHHHH
Confidence 3456888888888864 78888988875554445555553 355431110 00 00 0112
Q ss_pred CCCcEEEEEe-CCCCC-HHHHHHHHHHHHcCCeEEEEecCCCCc---------------chhhccCeEEEeC
Q 028777 90 SSNDLLIASA-GPGGF-STVDAICSRARSYGARVLLLTAQPESG---------------SSVKHASVVAYVP 144 (204)
Q Consensus 90 ~~~DlvI~iS-~sG~t-~~~~~~~~~ak~~g~~vI~iT~~~~s~---------------~l~~~ad~~l~~~ 144 (204)
..-|++|++. ..+.+ +.....++.|+++|+++|.|-.....+ ..++.||..+.+.
T Consensus 162 ~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~ir 233 (574)
T cd02767 162 EHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVR 233 (574)
T ss_pred hcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCC
Confidence 3456666664 44544 345677788999999999997654310 1246677777653
No 76
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=95.52 E-value=0.46 Score=39.15 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=47.9
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHH
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVY 170 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 170 (204)
.-|++|++....+. .+++.|...|+|||++.+...+ | ...|+.|+.-.++ .
T Consensus 157 ~Pd~iii~d~~~~~----~ai~Ea~kl~IPiIaivDTn~d-p--~~IdypIP~Ndds------------------~---- 207 (258)
T PRK05299 157 LPDALFVVDPNKEH----IAVKEARKLGIPVVAIVDTNCD-P--DGVDYPIPGNDDA------------------I---- 207 (258)
T ss_pred CCCEEEEeCCCccH----HHHHHHHHhCCCEEEEeeCCCC-C--cccceeeecCCch------------------H----
Confidence 46899998876443 4667889999999999987665 4 3577766543211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 028777 171 EGAMFVLFEMVVYKLGEALGQS 192 (204)
Q Consensus 171 ~~~~~~~ld~L~~~l~~~~g~~ 192 (204)
.+..+++..|...+..-.+..
T Consensus 208 -~si~li~~~l~~ai~~g~~~~ 228 (258)
T PRK05299 208 -RSIKLYTSKIADAILEGRQGR 228 (258)
T ss_pred -HHHHHHHHHHHHHHHHHhhch
Confidence 134556677776666666544
No 77
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=94.94 E-value=0.41 Score=45.36 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhc--CCcEEEEecchhHHHHHHHHHHHh-hcCCeEEE----ec-C-----------CC-----CCCC
Q 028777 34 PLDIMVAELTNTATQ--KGSVFLYGVGREGLMLKALCMRLA-HLGISTHL----VF-D-----------MT-----TPPI 89 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~--a~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~----~~-d-----------~~-----~~~~ 89 (204)
.-+++++.+++.+.+ .+.|.+|+.|....-+.++..+|. .+|-+-.. .. . .. ...+
T Consensus 117 SWdEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di 196 (743)
T TIGR01701 117 SWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIGKGSVNLEDF 196 (743)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCCCCCCCHhHH
Confidence 345688888888876 488989988875554444444443 34432111 00 0 00 1122
Q ss_pred CCCcEEEEEe-CCCCCH-HHHHHHHHHHHcCCeEEEEecCCCCc----------------chhhccCeEEEeC
Q 028777 90 SSNDLLIASA-GPGGFS-TVDAICSRARSYGARVLLLTAQPESG----------------SSVKHASVVAYVP 144 (204)
Q Consensus 90 ~~~DlvI~iS-~sG~t~-~~~~~~~~ak~~g~~vI~iT~~~~s~----------------~l~~~ad~~l~~~ 144 (204)
.+-|++|++. +.+.+. .....++.|+++|+++|.|-.....+ .-+++||..+.+.
T Consensus 197 ~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~ir 269 (743)
T TIGR01701 197 EHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVR 269 (743)
T ss_pred HhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCC
Confidence 3456777764 555443 35667788999999999996533210 1156788877664
No 78
>PRK09939 putative oxidoreductase; Provisional
Probab=94.52 E-value=0.56 Score=44.53 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhc---CCcEEEEecchhHHHHHHHHHHHh-hcCCeEEEe-cC-------------C---C----CCC
Q 028777 34 PLDIMVAELTNTATQ---KGSVFLYGVGREGLMLKALCMRLA-HLGISTHLV-FD-------------M---T----TPP 88 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~---a~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~-~d-------------~---~----~~~ 88 (204)
.-+++++.+++.+.+ .+.|.+|+.|....-+.++..+|. .+|-+-+.- +. . . ...
T Consensus 126 SWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G~g~~t~~l~D 205 (759)
T PRK09939 126 SWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLED 205 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCCCCCchHHHHHHHHhcCCCCCCCCHHH
Confidence 345678888887764 678999999987766666666664 344322210 00 0 0 012
Q ss_pred CCCCcEEEEE-eCCCCCHH-HHHHHHHHHHcCCeEEEEecCCCCc----------------chhhccCeEEEeC
Q 028777 89 ISSNDLLIAS-AGPGGFST-VDAICSRARSYGARVLLLTAQPESG----------------SSVKHASVVAYVP 144 (204)
Q Consensus 89 ~~~~DlvI~i-S~sG~t~~-~~~~~~~ak~~g~~vI~iT~~~~s~----------------~l~~~ad~~l~~~ 144 (204)
+..-|++|++ ++.+.+.. +...++.++++|+++|.|=....-+ .-+++||..+.+.
T Consensus 206 i~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~ir 279 (759)
T PRK09939 206 FEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVR 279 (759)
T ss_pred HhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCC
Confidence 3445777777 45555433 5566678999999999996533210 1357788877664
No 79
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=94.31 E-value=0.51 Score=46.21 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=38.2
Q ss_pred CCCcEEEEEe-CCCCCHH-HHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 90 SSNDLLIASA-GPGGFST-VDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS-~sG~t~~-~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
..-|++|++. ...++.. ....+..||++|+++|.|- ...+ +.+..||..+.+..
T Consensus 220 ~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvID-PR~t-~tA~~AD~~l~irP 275 (1009)
T TIGR01553 220 KNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHID-PRFN-RTATVADLYAPIRS 275 (1009)
T ss_pred HhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEc-CCCC-chhHhhccEeCCCC
Confidence 4457777775 4444433 3456677899999999995 4556 78999999887743
No 80
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=93.92 E-value=1.9 Score=33.90 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=34.6
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
..-|++|++....+ ..+++.|...|+|+|++++.+.+ | +..|+.|+.
T Consensus 126 ~~Pdlviv~~~~~~----~~ai~Ea~~l~IP~I~i~Dtn~~-~--~~i~ypIP~ 172 (193)
T cd01425 126 RLPDLVIVLDPRKE----HQAIREASKLGIPVIAIVDTNCD-P--DLIDYPIPA 172 (193)
T ss_pred cCCCEEEEeCCccc----hHHHHHHHHcCCCEEEEecCCCC-C--ccceEEeec
Confidence 45689999876433 44678889999999999987654 2 567777755
No 81
>CHL00067 rps2 ribosomal protein S2
Probab=93.67 E-value=3.1 Score=33.71 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
.-|++|++....+. .+++.|...|+|||+|++...+ | +..|+.|+.
T Consensus 161 ~P~~iiv~d~~~~~----~ai~Ea~~l~IPvIaivDTn~~-p--~~idypIP~ 206 (230)
T CHL00067 161 LPDIVIIIDQQEEY----TALRECRKLGIPTISILDTNCD-P--DLADIPIPA 206 (230)
T ss_pred CCCEEEEeCCcccH----HHHHHHHHcCCCEEEEEeCCCC-c--cccceeeec
Confidence 45788888877654 5778889999999999988766 4 335777755
No 82
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=93.62 E-value=2.5 Score=36.11 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
.-|++|++....+ ..+++.|+..|+|||+|++...+ | ...||.|+.
T Consensus 152 ~Pd~viv~d~~~e----~~AI~EA~kl~IPvIaivDTn~d-p--~~IdypIP~ 197 (326)
T PRK12311 152 LPDLLFVIDTNKE----DIAIQEAQRLGIPVAAIVDTNCD-P--DGITYPVPG 197 (326)
T ss_pred CCCEEEEeCCccc----hHHHHHHHHcCCCEEEEeeCCCC-c--cccceeecC
Confidence 4688888887654 34667889999999999977655 3 457776644
No 83
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=93.56 E-value=3.3 Score=33.43 Aligned_cols=46 Identities=15% Similarity=0.036 Sum_probs=34.4
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
.-|++|++....+. .+++.|...|+|||++++.... | ...|+.|+.
T Consensus 155 ~Pd~vii~d~~~~~----~ai~Ea~~l~IP~I~ivDTn~~-p--~~idypIP~ 200 (225)
T TIGR01011 155 LPDLLFVIDPVKEK----IAVAEARKLGIPVVAIVDTNCD-P--DLVDYPIPG 200 (225)
T ss_pred CCCEEEEeCCCccH----HHHHHHHHcCCCEEEEeeCCCC-C--cccceeeec
Confidence 46899988875443 3567789999999999987665 4 357777755
No 84
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=93.53 E-value=1.1 Score=34.25 Aligned_cols=97 Identities=6% Similarity=-0.060 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCc-EEEEecchhH-HHHHHHHHHHhhcCCeEEEecC--------------CC------------CCCC--
Q 028777 40 AELTNTATQKGS-VFLYGVGREG-LMLKALCMRLAHLGISTHLVFD--------------MT------------TPPI-- 89 (204)
Q Consensus 40 ~~~~~~i~~a~~-I~i~G~G~S~-~~a~~~~~~l~~lg~~~~~~~d--------------~~------------~~~~-- 89 (204)
+.+++.|.+|+| ++++|.|... -.++.+......+|+++..-.. .. -.-+
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g 97 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDG 97 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccC
Confidence 678888888755 5677887753 3444444444566777665321 00 0112
Q ss_pred -CCCcEEEEEeCCCCCHH-HHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 90 -SSNDLLIASAGPGGFST-VDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 90 -~~~DlvI~iS~sG~t~~-~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
++-|++|++-..=+-.+ ++..+|+.. ..++|+|+. .....||+.|..
T Consensus 98 ~g~~DlvlfvG~~~y~~~~~ls~lk~f~--~~~~i~l~~-----~y~pnA~~Sf~n 146 (162)
T TIGR00315 98 EGNYDLVLFLGIIYYYLSQMLSSLKHFS--HIVTIAIDK-----YYQPNADYSFPN 146 (162)
T ss_pred CCCcCEEEEeCCcchHHHHHHHHHHhhc--CcEEEEecC-----CCCCCCceeccc
Confidence 56688877766554433 677777665 688999983 345678877643
No 85
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=93.49 E-value=2.3 Score=32.17 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCe-EEE--ecC--------CCCC-CCCCCcEEEEEeC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGIS-THL--VFD--------MTTP-PISSNDLLIASAG 100 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~-~~~--~~d--------~~~~-~~~~~DlvI~iS~ 100 (204)
|.+++..++++..|.+ +...++|.+....+|.-+...|....+. +.. +.+ +... ......-++++.-
T Consensus 2 e~~~n~Ak~LA~~L~~-~~Pvi~~~~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d 80 (155)
T PF10432_consen 2 ESFVNPAKRLALELAG-RIPVIYGSPLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRD 80 (155)
T ss_dssp --GHHHHHHHHHHHTT-SEEEEEECGCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-
T ss_pred ccccCHHHHHHHHHcC-CCcEEEECccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEc
Confidence 3456678889999888 6668888888899999999999865443 332 233 1111 2345566777777
Q ss_pred CCCCHHHHHHH----HHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHH
Q 028777 101 PGGFSTVDAIC----SRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFV 176 (204)
Q Consensus 101 sG~t~~~~~~~----~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 176 (204)
........... +.++++|+.++-|....++ +|.+++ ...+
T Consensus 81 ~~~~~~~~~r~~~~~e~~~~~~~~v~~v~~~g~s-~l~rl~-----------------------------------~li~ 124 (155)
T PF10432_consen 81 PEDHPRVQRRVEITREIAEDRGVRVIEVEAEGGS-PLERLA-----------------------------------SLIY 124 (155)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCSSEEEEE--SCCC-HHHHHH-----------------------------------HHHH
T ss_pred CCccccchhhhHHHHHHHHhcCCcEEEEecCCCC-HHHHHH-----------------------------------HHHH
Confidence 67666653333 3356679999999888777 665542 2456
Q ss_pred HHHHHHHHHHHHhCCChHH
Q 028777 177 LFEMVVYKLGEALGQSPEA 195 (204)
Q Consensus 177 ~ld~L~~~l~~~~g~~~~~ 195 (204)
+.|....+|+...|.+|..
T Consensus 125 l~d~aS~YLA~~~GvDP~~ 143 (155)
T PF10432_consen 125 LGDYASVYLALLYGVDPTP 143 (155)
T ss_dssp HHHHHHHHHHHHCT--SS-
T ss_pred HHHHHHHHHHHHhCcCCCc
Confidence 7788888888888888764
No 86
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=93.31 E-value=1.5 Score=35.86 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=34.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 92 NDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
-|++|++-...+. .+++.|++.|+|||++.+...+ | ...|+.|+.
T Consensus 157 Pd~l~ViDp~~e~----iAv~EA~klgIPVvAlvDTn~d-p--d~VD~~IP~ 201 (252)
T COG0052 157 PDVLFVIDPRKEK----IAVKEANKLGIPVVALVDTNCD-P--DGVDYVIPG 201 (252)
T ss_pred CCEEEEeCCcHhH----HHHHHHHHcCCCEEEEecCCCC-C--ccCceeecC
Confidence 5888888765443 3567789999999999987665 4 678887754
No 87
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=93.02 E-value=2.5 Score=37.78 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=37.9
Q ss_pred CCCCcEEEEEeCCC-CCH--HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 89 ISSNDLLIASAGPG-GFS--TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 89 ~~~~DlvI~iS~sG-~t~--~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
+.+-|++|++.... .+. .....+..++++|+++|.|-. ..+ ..+..||..|.+..
T Consensus 158 ~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividp-r~s-~ta~~Ad~~l~i~P 215 (477)
T cd02759 158 WENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDP-RLT-WLAARADLWLPIRP 215 (477)
T ss_pred hhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECC-CCC-hhhHhhCeeeccCC
Confidence 34557777776543 332 344556678889999998865 456 78899999887754
No 88
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=92.69 E-value=3.3 Score=37.47 Aligned_cols=135 Identities=10% Similarity=0.186 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC------CC---CCCCCCC-cEEEEEeCCCCCHH
Q 028777 37 IMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD------MT---TPPISSN-DLLIASAGPGGFST 106 (204)
Q Consensus 37 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------~~---~~~~~~~-DlvI~iS~sG~t~~ 106 (204)
..++++++.+++-+...++|.|.....|.+-+.+...+. +.+.+ .. ...++++ -++.+...-.-.+.
T Consensus 514 ~~i~~la~~l~~~~slLi~GRGy~~at~lEGAlKiKEis---ymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K 590 (670)
T KOG1268|consen 514 PKIKDLAKELKDHKSLLIMGRGYNFATALEGALKIKEIS---YMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPK 590 (670)
T ss_pred HHHHHHHHHHhccceEEEecccccHHHHhhhhhhhheee---ehhhchhhhcccccCceeEecCCCCEEEEEecCcccHH
Confidence 388999999999999999999999999998888877542 22222 11 1122222 46667777778888
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHH
Q 028777 107 VDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLG 186 (204)
Q Consensus 107 ~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~ 186 (204)
...+++....++..-|.|++.... .-.+..+..|.+|....- +.++. ..+=+++|...++
T Consensus 591 ~~na~qQv~aRkG~pIiic~~~~~-~~~~~~~~~~~vP~tvDC-------------lQgil------~viPlQLlsyhla 650 (670)
T KOG1268|consen 591 CQNAIQQVTARKGRPIIICDKGDK-EEQKAGNKTLEVPQTVDC-------------LQGIL------NVIPLQLLSYHLA 650 (670)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCc-hhhcccceEEeCCchhhh-------------hhhhh------hhhhHHHHHHHHH
Confidence 999999999988888889988776 545556667888753221 11111 2345677888888
Q ss_pred HHhCCChH
Q 028777 187 EALGQSPE 194 (204)
Q Consensus 187 ~~~g~~~~ 194 (204)
..+|...+
T Consensus 651 v~rg~~vD 658 (670)
T KOG1268|consen 651 VLRGINVD 658 (670)
T ss_pred HHcCCCCC
Confidence 88887643
No 89
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=92.48 E-value=3.3 Score=37.75 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhc------CCcEEEEecchhHHHHHHHHHHHhh--cCCeEEEe-cC------------C----C----
Q 028777 35 LDIMVAELTNTATQ------KGSVFLYGVGREGLMLKALCMRLAH--LGISTHLV-FD------------M----T---- 85 (204)
Q Consensus 35 ~~~~l~~~~~~i~~------a~~I~i~G~G~S~~~a~~~~~~l~~--lg~~~~~~-~d------------~----~---- 85 (204)
-+++++.+++.+++ .+.|.++|.|....-..++..+|.. +|-+.+.. .. . .
T Consensus 72 WdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 151 (565)
T cd02754 72 WDEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGADGPPGS 151 (565)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCCcccchHHHHHHHhhccCCCCCCC
Confidence 45678888887763 4568888777654433344444432 44322210 00 0 0
Q ss_pred CCCCCCCcEEEEEeCCCCCH--HHHHHHHHHHHc--CCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIASAGPGGFS--TVDAICSRARSY--GARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~sG~t~--~~~~~~~~ak~~--g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
...+.+-|++|++....... .....+..++++ |+++|.|-. ..+ +.+..||..|.+..
T Consensus 152 ~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP-~~t-~ta~~Ad~~l~i~P 213 (565)
T cd02754 152 YDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDP-RRT-RTADIADLHLPIRP 213 (565)
T ss_pred HHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcC-CCC-cchHHhCeeeCCCC
Confidence 01224457777776554322 233455667777 999998864 456 78899999887744
No 90
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=92.29 E-value=3.9 Score=37.16 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=36.6
Q ss_pred CCCCcEEEEEeCC-CCCHH-------HHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 89 ISSNDLLIASAGP-GGFST-------VDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 89 ~~~~DlvI~iS~s-G~t~~-------~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
+.+-|++|++-.. ..+.. ....++.++++|+++|.|-. ..+ +.++.||..|.+..
T Consensus 154 ~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDP-r~t-~ta~~AD~~l~irP 216 (539)
T cd02762 154 IDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDP-RRT-ETAKLADEHLFVRP 216 (539)
T ss_pred hhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECC-CCc-hhhHhcCEeeCcCC
Confidence 3455777776433 33321 22356678899999998864 556 78899999997754
No 91
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=92.15 E-value=2.2 Score=40.93 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHh------cCCcEEEEecchhHHHHHHHHHHHhh--cCCeEEEec-C-------------CC-------C
Q 028777 36 DIMVAELTNTAT------QKGSVFLYGVGREGLMLKALCMRLAH--LGISTHLVF-D-------------MT-------T 86 (204)
Q Consensus 36 ~~~l~~~~~~i~------~a~~I~i~G~G~S~~~a~~~~~~l~~--lg~~~~~~~-d-------------~~-------~ 86 (204)
+++++.+++.|+ ..+.|.++|.|.......+...+|.+ +|-+..... . .- .
T Consensus 122 deAl~~iA~~l~~i~~~~G~~~i~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~ 201 (830)
T PRK13532 122 DQAFDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEGYAASKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCY 201 (830)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecCCcchHHHHHHHHHHHhccCCCcccCCccccchhHHHHHHHhhCCCCCCCCH
Confidence 457777777664 35678888877755444444455554 332211100 0 00 0
Q ss_pred CCCCCCcEEEEEeCC-CCCHHH-HHHHHHH--HHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 87 PPISSNDLLIASAGP-GGFSTV-DAICSRA--RSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 87 ~~~~~~DlvI~iS~s-G~t~~~-~~~~~~a--k~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
..+..-|++|++... ..+..+ ...+..+ +++|+++|.|- ...+ +.++.||..|.+..
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviD-Pr~t-~ta~~ad~~l~irP 262 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLS-TFEH-RSFELADNGIIFTP 262 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEEC-CCCC-chhHhcCeeeccCC
Confidence 122345777777544 333221 1122223 35899999985 4456 78999999887743
No 92
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=91.85 E-value=5.5 Score=31.72 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=32.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 92 NDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
-|++|++....+ ..+++.|+..|+|+|++++...+ | +..|+.|+.
T Consensus 144 P~~vii~~~~~~----~~~i~Ea~~l~IP~i~i~Dtn~~-~--~~i~ypIp~ 188 (211)
T PF00318_consen 144 PDLVIILDPNKN----KNAIREANKLNIPTIAIVDTNCN-P--SLIDYPIPA 188 (211)
T ss_dssp BSEEEESSTTTT----HHHHHHHHHTTS-EEEEESTTS--G--TTSSEEEES
T ss_pred CcEEEEeccccc----chhHHHHHhcCceEEEeecCCCC-c--cccceEeec
Confidence 578888776544 34678899999999999987655 3 448887765
No 93
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=91.69 E-value=3.8 Score=36.48 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCcEEEEEeCC-CCCH-HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 90 SSNDLLIASAGP-GGFS-TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS~s-G~t~-~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
.+-|++|++... ..+. .....+..+|++|+++|.|- ...+ +.+..||..+.+..
T Consensus 169 ~~ad~il~~G~N~~~~~~~~~~~l~~ar~~Gaklivid-Pr~s-~ta~~Ad~~l~i~P 224 (461)
T cd02750 169 YNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVS-PDYS-PSAKHADLWVPIKP 224 (461)
T ss_pred hcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEc-CCCC-cchhhcCEEeccCC
Confidence 445777777544 3332 12234556899999999995 4556 78999999887754
No 94
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=91.55 E-value=4.2 Score=36.06 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=38.1
Q ss_pred CCCCCcEEEEEeCC-CCCH--HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 88 PISSNDLLIASAGP-GGFS--TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~~DlvI~iS~s-G~t~--~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
.+.+-|++|++... .++. .....+..++++|+++|.|-.. .+ +.++.||..+.+..
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr-~t-~ta~~AD~~i~i~P 211 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPR-FS-ELASKADEWIPIKP 211 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCC-CC-hhhHhhCEecCCCC
Confidence 34555777777543 3332 1345566788899999888865 46 78899999887643
No 95
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=91.54 E-value=3.1 Score=38.74 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHh------cCCcEEEEecchhHHHHHHHHHHHhh--cCCeEEEec------C----C-------C----
Q 028777 35 LDIMVAELTNTAT------QKGSVFLYGVGREGLMLKALCMRLAH--LGISTHLVF------D----M-------T---- 85 (204)
Q Consensus 35 ~~~~l~~~~~~i~------~a~~I~i~G~G~S~~~a~~~~~~l~~--lg~~~~~~~------d----~-------~---- 85 (204)
-++.++.+++.|+ ..++|.+++.+....-..++..+|.. +|.+-.... . . .
T Consensus 70 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 149 (671)
T TIGR01591 70 WDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIGAMSNT 149 (671)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCCCCCCC
Confidence 4567888888887 34567666655433333344445543 554311110 0 0 0
Q ss_pred CCCCCCCcEEEEEeCC-CCC-HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIASAGP-GGF-STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~s-G~t-~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
...+.+-|++|++... ..+ ......++.++++|+++|.|- ...+ ..+..+|..|.+..
T Consensus 150 ~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvid-p~~s-~ta~~ad~~i~i~P 209 (671)
T TIGR01591 150 ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVID-PRKT-ETAKIADLHIPLKP 209 (671)
T ss_pred HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEEC-CCCC-hhhHhhCcccCCCC
Confidence 0123445787777443 222 234566778889999999995 4456 78889998887644
No 96
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=91.41 E-value=4.3 Score=30.99 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCcEE---EEecchhHHHHHHHHHHHhhcCCeEEEec-C---------CCCCCCCCCcEEEEEeCCCCCH
Q 028777 39 VAELTNTATQKGSVF---LYGVGREGLMLKALCMRLAHLGISTHLVF-D---------MTTPPISSNDLLIASAGPGGFS 105 (204)
Q Consensus 39 l~~~~~~i~~a~~I~---i~G~G~S~~~a~~~~~~l~~lg~~~~~~~-d---------~~~~~~~~~DlvI~iS~sG~t~ 105 (204)
++.+.+.+.+.++|. +||.-.+ -..|...|...|+...... + +....-+.=|.++++|-.|...
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a---~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~ 119 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYA---SDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFL 119 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhc---cHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHH
Confidence 566667777666543 3332112 2246677888998865432 2 1111224458999998877755
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCC-cchhhccCeEEEeCC
Q 028777 106 TVDAICSRARSYGARVLLLTAQPES-GSSVKHASVVAYVPA 145 (204)
Q Consensus 106 ~~~~~~~~ak~~g~~vI~iT~~~~s-~~l~~~ad~~l~~~~ 145 (204)
. +++.+|++|..|+++...... .+|.+.||..+.+..
T Consensus 120 ~---Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~~ 157 (160)
T TIGR00288 120 P---VINKAKENGKETIVIGAEPGFSTALQNSADIAIILGE 157 (160)
T ss_pred H---HHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCCC
Confidence 4 557788999999999954322 168899999888754
No 97
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=91.01 E-value=5.1 Score=37.50 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCCCcEEEEEe-CCCCCHH-HHHHHHHHHHc-CCeEEEEecCCCCcchhhccCeEEEeCCc
Q 028777 89 ISSNDLLIASA-GPGGFST-VDAICSRARSY-GARVLLLTAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 89 ~~~~DlvI~iS-~sG~t~~-~~~~~~~ak~~-g~~vI~iT~~~~s~~l~~~ad~~l~~~~~ 146 (204)
+.+-|++|++. ...++.. ...-+..|+++ |+++|.|-.. .+ ..+..||+.+.+...
T Consensus 167 i~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR-~t-~Ta~~AD~~l~irPG 225 (649)
T cd02752 167 IKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPR-FT-RTAAKADLYVPIRSG 225 (649)
T ss_pred HhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCC-CC-chhHhcCEeeCcCCC
Confidence 34457777764 3333322 34445667776 9998888754 55 688999998877543
No 98
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=90.32 E-value=4.1 Score=39.65 Aligned_cols=53 Identities=26% Similarity=0.238 Sum_probs=36.2
Q ss_pred CCcEEEEE-eCCCCCHH-HHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 91 SNDLLIAS-AGPGGFST-VDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 91 ~~DlvI~i-S~sG~t~~-~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
.-|++|++ +....+.- ....+..|+++|+++|.|- ...+ +.++.||..|.+..
T Consensus 224 na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvId-Pr~t-~tA~~AD~wlpirP 278 (912)
T TIGR03479 224 NADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIA-PDYN-PSTIHADLWLPVRV 278 (912)
T ss_pred cCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEEC-CCCC-hhhhhCCeecCCCC
Confidence 44666666 44333322 3455667889999999985 5566 79999999887643
No 99
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.27 E-value=2.7 Score=28.98 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=53.3
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEe--cC-----C--CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEE
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLV--FD-----M--TTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVL 122 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~--~d-----~--~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI 122 (204)
|.++|. .... -..+...+...|.....+ .+ . ....+.+-|+||+++.-=.......+-+.||+.|.|++
T Consensus 2 vliVGG-~~~~-~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 2 VLIVGG-REDR-ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred EEEEcC-Cccc-HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEE
Confidence 556663 2221 233556677788888887 11 1 34567788999999999998889999999999999988
Q ss_pred EEecC
Q 028777 123 LLTAQ 127 (204)
Q Consensus 123 ~iT~~ 127 (204)
-.-+.
T Consensus 80 ~~~~~ 84 (97)
T PF10087_consen 80 YSRSR 84 (97)
T ss_pred EECCC
Confidence 77533
No 100
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=90.04 E-value=6.1 Score=35.52 Aligned_cols=109 Identities=12% Similarity=0.174 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhc------CCcEEEEecchhHHHHHHHHHHHh-hcCC-eEEE----ecC---------C-----C---
Q 028777 35 LDIMVAELTNTATQ------KGSVFLYGVGREGLMLKALCMRLA-HLGI-STHL----VFD---------M-----T--- 85 (204)
Q Consensus 35 ~~~~l~~~~~~i~~------a~~I~i~G~G~S~~~a~~~~~~l~-~lg~-~~~~----~~d---------~-----~--- 85 (204)
-++.++.+++.|++ .++|.+++.+....-..++..+|. ..|. +... ... . .
T Consensus 71 WdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 150 (512)
T cd02753 71 WDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGSGAMTNS 150 (512)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCCCCCCCC
Confidence 35688888888864 467877766554333333444443 2332 1110 000 0 0
Q ss_pred CCCCCCCcEEEEEeCCC-CC-HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIASAGPG-GF-STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~sG-~t-~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
...+.+-|++|++.... .+ ......+..++++|+++|.|-... + +.+..||..|.+..
T Consensus 151 ~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~-s-~ta~~Ad~~l~i~P 210 (512)
T cd02753 151 IADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRR-T-ELARFADLHLQLRP 210 (512)
T ss_pred HHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCC-c-cchHhhCeeeCCCC
Confidence 01124457777776543 22 233455667889999999998554 5 67889999887743
No 101
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=89.97 E-value=4.9 Score=36.20 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=37.9
Q ss_pred CCCcEEEEEe-CCCCC-HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 90 SSNDLLIASA-GPGGF-STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS-~sG~t-~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
..-|++|++- ....+ ......+..++++|+++|.|- ...+ +.++.||..|.+..
T Consensus 156 ~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvD-Pr~t-~ta~~Ad~~l~i~P 211 (501)
T cd02766 156 VNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVID-PYRT-ATAARADLHIQIRP 211 (501)
T ss_pred hcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEEC-CCCC-ccHHHhCeeeccCC
Confidence 4456777764 43433 333455667899999999885 5566 78999999998754
No 102
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=89.36 E-value=1.9 Score=31.37 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCcE---EEEecchhHHHHHHHHHHHhhcCCeEEEecC------------------C-CCCCCCCCcEE
Q 028777 38 MVAELTNTATQKGSV---FLYGVGREGLMLKALCMRLAHLGISTHLVFD------------------M-TTPPISSNDLL 95 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I---~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------------------~-~~~~~~~~Dlv 95 (204)
..+.+.+.+.+.+.+ ++||. ........+...|...|+.+....- . ....-++-|.+
T Consensus 21 ~~~~l~~~i~~~~~~~~~~~y~~-~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~i 99 (146)
T PF01936_consen 21 DFERLLEEIRKYGPLVRIRAYGN-WDDPNQKSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTI 99 (146)
T ss_dssp -HHHHHHHHTTTEEEEEEEEEE-----HHHHHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEE
T ss_pred CHHHHHHHHHhcCCeEEEEEEee-ccccchhhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEE
Confidence 567777777776544 45554 1222335566778888887665321 0 00111223888
Q ss_pred EEEeCCCCCHHHHHHHHHHHHcCCeEEEEe--cCCCCcchhhccCeEEEe
Q 028777 96 IASAGPGGFSTVDAICSRARSYGARVLLLT--AQPESGSSVKHASVVAYV 143 (204)
Q Consensus 96 I~iS~sG~t~~~~~~~~~ak~~g~~vI~iT--~~~~s~~l~~~ad~~l~~ 143 (204)
+++|.-+. ...+++.++++|.+|+.+. +.... .|.+.||..+.+
T Consensus 100 vLvSgD~D---f~~~v~~l~~~g~~V~v~~~~~~~s~-~L~~~ad~f~~~ 145 (146)
T PF01936_consen 100 VLVSGDSD---FAPLVRKLRERGKRVIVVGAEDSASE-ALRSAADEFISI 145 (146)
T ss_dssp EEE---GG---GHHHHHHHHHH--EEEEEE-GGGS-H-HHHHHSSEEEE-
T ss_pred EEEECcHH---HHHHHHHHHHcCCEEEEEEeCCCCCH-HHHHhcCEEEeC
Confidence 88887644 6667788889999888887 34555 788999988764
No 103
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.19 E-value=11 Score=33.54 Aligned_cols=111 Identities=12% Similarity=0.133 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC-----C
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD-----M 84 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d-----~ 84 (204)
....+.+++....+..+....++..|.+.+.+-.+ ...+.++|..+.+++- .
T Consensus 60 nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~ 139 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADE 139 (432)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Confidence 35567788888888888888899988877543211 1124667888777642 1
Q ss_pred CCCCCCCCcEEEEEeCCCCCH----HHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCCc
Q 028777 85 TTPPISSNDLLIASAGPGGFS----TVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS~sG~t~----~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~~ 146 (204)
....+++++-+|++-..|+.. ++-.+++.|+++|+.+|. ++. .. |+..-||+++...++
T Consensus 140 l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~liv--D~T~~tP~~~~-pl~~GADIvv~S~TK 208 (432)
T PRK06702 140 IVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIV--DNTLATPYLCQ-AFEHGANIIVHSTTK 208 (432)
T ss_pred HHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEE--ECCCCchhhCC-hhhcCCCEEEEcccc
Confidence 223455665666677778777 889999999999986653 442 33 566669998887664
No 104
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.95 E-value=4 Score=36.30 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
.+.++...+. .++|.++|.|.|+..+ +..|...|..+...+
T Consensus 4 ~~~~~~~~~~-~~~i~v~G~G~sG~a~---a~~L~~~G~~V~~~D 44 (458)
T PRK01710 4 DFNEFKKFIK-NKKVAVVGIGVSNIPL---IKFLVKLGAKVTAFD 44 (458)
T ss_pred hHHHHhhhhc-CCeEEEEcccHHHHHH---HHHHHHCCCEEEEEC
Confidence 4556666665 5789999999998733 344666676655543
No 105
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=87.86 E-value=1.6 Score=34.59 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=43.7
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEE
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAY 142 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~ 142 (204)
+.+-|++|++-.|+.......++..++++|+++|.|-.. .+ ++...+|+.|.
T Consensus 153 ~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~-~~-~~d~~~d~~~~ 204 (206)
T cd01410 153 ACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ-PT-PKDKLADLVIH 204 (206)
T ss_pred HhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC-CC-CCCccccEEEe
Confidence 356799999999999999999999999999999877654 45 67788888764
No 106
>PRK09004 FMN-binding protein MioC; Provisional
Probab=87.74 E-value=1.8 Score=32.27 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=36.3
Q ss_pred cEEEEec--chhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCC
Q 028777 51 SVFLYGV--GREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGP 101 (204)
Q Consensus 51 ~I~i~G~--G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~s 101 (204)
-.++||+ |.+..+|+.++..+...|..+..++......+.+.|.+|+++.+
T Consensus 4 i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~~~~l~~~~~li~~~sT 56 (146)
T PRK09004 4 ITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPLLDDLSASGLWLIVTST 56 (146)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCCHHHhccCCeEEEEECC
Confidence 4567776 88999999999999999988877654223345566666666543
No 107
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=87.69 E-value=1.4 Score=30.52 Aligned_cols=77 Identities=9% Similarity=0.198 Sum_probs=48.1
Q ss_pred EEEEecch-hHHHHHHHHHHHhhcCCeEEEecC---CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 52 VFLYGVGR-EGLMLKALCMRLAHLGISTHLVFD---MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 52 I~i~G~G~-S~~~a~~~~~~l~~lg~~~~~~~d---~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+.++|.|. |+.+++-+...+..-|+++....- .......+-|+++.-..-.+ ..-++-+.+.+.|+|+..|...
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~--~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAY--MLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHH--HHHHHHHHhhhcCCCEEEeChh
Confidence 47778887 557777787878888887655321 11122345576665433322 3444455677889999999876
Q ss_pred CCC
Q 028777 128 PES 130 (204)
Q Consensus 128 ~~s 130 (204)
...
T Consensus 85 ~Y~ 87 (95)
T TIGR00853 85 QYG 87 (95)
T ss_pred hcc
Confidence 554
No 108
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=87.46 E-value=13 Score=35.00 Aligned_cols=54 Identities=4% Similarity=0.028 Sum_probs=36.2
Q ss_pred CCCcEEEEEeCCCCC--HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 90 SSNDLLIASAGPGGF--STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t--~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
..-|++|++...... ..+...+..+|++|+++|.|- .-.+ ..+..||..|.+..
T Consensus 154 ~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvID-Pr~t-~ta~~AD~wl~irP 209 (679)
T cd02763 154 EHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVN-PVRT-GYAAIADEWVPIKP 209 (679)
T ss_pred HhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEc-CcCC-cchHhhCeecCcCC
Confidence 456788877643221 123345567889999999885 5555 68899999887643
No 109
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.31 E-value=4.4 Score=35.16 Aligned_cols=110 Identities=12% Similarity=0.162 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh-hcCCeEEEecC---------C-----CCC---CC-CCCcE
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA-HLGISTHLVFD---------M-----TTP---PI-SSNDL 94 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~~d---------~-----~~~---~~-~~~Dl 94 (204)
.-++.++.+++.|.++++..++|.|.+..-..+..++|. .+|-.+..... . ... .+ .+-|+
T Consensus 55 sWdeAl~~ia~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~ 134 (415)
T cd02761 55 SLEEAIEKAAEILKEAKRPLFYGLGTTVCEAQRAGIELAEKLGAIIDHAASVCHGPNLLALQDSGWPTTTLGEVKNRADV 134 (415)
T ss_pred CcHHHHHHHHHHHHhhcCCEEEEcccchHHHHHHHHHHHHHHCCCccccccccccchHHHHHhCCCccccHHHHHhcCCE
Confidence 456789999999998877777887776533333333443 44422111100 0 001 12 34677
Q ss_pred EEEEeCC-CCCHHHH--HHH-------HHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 95 LIASAGP-GGFSTVD--AIC-------SRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 95 vI~iS~s-G~t~~~~--~~~-------~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
++++-.. -.+.... ... +.++++|++++.|- ...+ +.++.||..+.+..
T Consensus 135 il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~id-p~~t-~ta~~Ad~~l~i~p 193 (415)
T cd02761 135 IVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVD-PRKS-DTAKLADIHLQIDP 193 (415)
T ss_pred EEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEc-CCCc-chhhhcceEEecCC
Confidence 7777543 3332221 111 11235788888874 5566 78999999887754
No 110
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=86.91 E-value=9.9 Score=36.60 Aligned_cols=108 Identities=10% Similarity=0.075 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHh------cCCcEEEEecchhHHHHHHHHHHHhh--cCCeEEEec-C-------------CC-------C
Q 028777 36 DIMVAELTNTAT------QKGSVFLYGVGREGLMLKALCMRLAH--LGISTHLVF-D-------------MT-------T 86 (204)
Q Consensus 36 ~~~l~~~~~~i~------~a~~I~i~G~G~S~~~a~~~~~~l~~--lg~~~~~~~-d-------------~~-------~ 86 (204)
+++++.+++.|. ..+.|.++|.|.......++..+|.. +|.+.+... . .- .
T Consensus 122 DeAl~~iA~kl~~i~~~~G~~si~~~gsg~~~~~~~~~~~~~~~~~~gt~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~ 201 (830)
T TIGR01706 122 DQAFDEMEEQFKRALKEKGPTAIGMFGSGQWTIWEGYAALKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCY 201 (830)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEecCCcchHHHHHHHHHHHhhcCCCcccCCcccccchhHHHHHHhcCCCCCCCCH
Confidence 457777777664 35678888888755444444445554 232211100 0 00 0
Q ss_pred CCCCCCcEEEEEeCCC-CCHHH-HHHHHHHH--HcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 87 PPISSNDLLIASAGPG-GFSTV-DAICSRAR--SYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 87 ~~~~~~DlvI~iS~sG-~t~~~-~~~~~~ak--~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
..+..-|++|++.... .+..+ ...+..++ ++|+++|.|- .-.+ +.+..||..|.+..
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviD-Pr~t-~ta~~Ad~~l~irP 262 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLS-TFTH-RSFDLADIGIIFKP 262 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEEC-CCCC-chhHHhCeeeccCC
Confidence 1224457888775543 33211 11222233 4799999886 4455 78899999887743
No 111
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=86.90 E-value=14 Score=33.56 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=36.7
Q ss_pred CCCCCcEEEEEeCCC-CCH-HHH--HHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 88 PISSNDLLIASAGPG-GFS-TVD--AICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG-~t~-~~~--~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
.+.+-|++|++.... ++. .+. .-+..++++|+++|.|-.. .+ +.+..||..|.+..
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr-~s-~ta~~AD~~l~i~P 218 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPR-LS-NTAAKADEWLPIKP 218 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCC-CC-hhhHhcCEeeCCCC
Confidence 345568888888443 221 111 3344568899999999655 45 67888999987743
No 112
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=86.77 E-value=14 Score=33.91 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=37.0
Q ss_pred CCcEEEEEeCCC-CCH-HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 91 SNDLLIASAGPG-GFS-TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 91 ~~DlvI~iS~sG-~t~-~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
.-|++|++.... .+. .....+..++++|+++|.|-. ..+ +.++.||..|.+..
T Consensus 159 ~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDP-r~s-~ta~~Ad~~l~irP 213 (567)
T cd02765 159 NAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDP-VYS-TTAAKADQWVPIRP 213 (567)
T ss_pred cCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECC-CCC-cchhhcCEEeccCC
Confidence 457777776553 332 244556678999999999964 456 78999999887743
No 113
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=86.47 E-value=7.3 Score=28.61 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=62.7
Q ss_pred HHHHHHHHHhc---CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC------------------CCCCCCCCCcEEE
Q 028777 38 MVAELTNTATQ---KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD------------------MTTPPISSNDLLI 96 (204)
Q Consensus 38 ~l~~~~~~i~~---a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------------------~~~~~~~~~DlvI 96 (204)
.+.++.+.+.+ -..+..|+.......-..+...|...|+.+..... .....-++-|.++
T Consensus 25 d~~~l~~~~~~~~~~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~iv 104 (149)
T cd06167 25 DYRKLLEFLRDGGEIVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIV 104 (149)
T ss_pred CHHHHHHHHHhCCeEEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEE
Confidence 45555555554 34445666544323445677788999998876531 0001112568888
Q ss_pred EEeCCCCCHHHHHHHHHHHHcCCeEEEEecC-CCCcchhhccCe
Q 028777 97 ASAGPGGFSTVDAICSRARSYGARVLLLTAQ-PESGSSVKHASV 139 (204)
Q Consensus 97 ~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~-~~s~~l~~~ad~ 139 (204)
++|.-+ +...+++.++++|.+|+.+... .-|..|.+.||.
T Consensus 105 LvSgD~---Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~ 145 (149)
T cd06167 105 LVSGDS---DFVPLVERLRELGKRVIVVGFEAKTSRELRKAADR 145 (149)
T ss_pred EEECCc---cHHHHHHHHHHcCCEEEEEccCccChHHHHHhCCc
Confidence 888766 5677778899999999999875 222167777874
No 114
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=86.38 E-value=3.3 Score=38.34 Aligned_cols=54 Identities=9% Similarity=0.080 Sum_probs=36.4
Q ss_pred CCCcEEEEEeCCC-CCHH----HHHHHHHHHHcCCeEEEEecCCCCcchhh-ccCeEEEeCC
Q 028777 90 SSNDLLIASAGPG-GFST----VDAICSRARSYGARVLLLTAQPESGSSVK-HASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS~sG-~t~~----~~~~~~~ak~~g~~vI~iT~~~~s~~l~~-~ad~~l~~~~ 145 (204)
..-|++|++.... .+.- ....+..||++|+++|.|-... + +.+. .||..|.+..
T Consensus 165 ~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~-t-~tA~~~AD~~i~irP 224 (617)
T cd02770 165 KDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRY-T-DTAVTLADEWIPIRP 224 (617)
T ss_pred hcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCC-C-ccccccCCEEECCCC
Confidence 3457777775543 2321 2356677899999999997554 5 5675 8999887743
No 115
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.36 E-value=3.8 Score=36.06 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
.++|+++|.|.|+..+-.+ |...|..+...+
T Consensus 6 ~~~i~v~G~G~sG~s~~~~---l~~~G~~v~~~D 36 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDF---FLARGVTPRVID 36 (438)
T ss_pred CCEEEEEeeCHHHHHHHHH---HHHCCCeEEEEc
Confidence 5689999999999887643 777787776644
No 116
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=85.98 E-value=17 Score=29.47 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=26.4
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 92 NDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
.|+|+++...-+...+.++ .+.++|||+|.+..-.
T Consensus 174 ~D~vvvln~~e~~sAilEA----~K~~IPTIgIVDtN~~ 208 (251)
T KOG0832|consen 174 PDLVVVLNPEENHSAILEA----AKMAIPTIGIVDTNCN 208 (251)
T ss_pred cceeEecCcccccHHHHHH----HHhCCCeEEEecCCCC
Confidence 3899999887776666554 5568999999977544
No 117
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=85.84 E-value=12 Score=34.09 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecch--hHHHHHHHHHHHhhcCCeEEEecC-----CCC---C---CC--CCCcEEE
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGR--EGLMLKALCMRLAHLGISTHLVFD-----MTT---P---PI--SSNDLLI 96 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~--S~~~a~~~~~~l~~lg~~~~~~~d-----~~~---~---~~--~~~DlvI 96 (204)
.+..++.++.+++.|.+.++|.++|-=. .-..+--+...|..+|+++.+... .+. . .. ..-|++|
T Consensus 37 l~~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~LiI 116 (539)
T TIGR00644 37 LKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVSLII 116 (539)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCCEEE
Confidence 4567888999999999999999998622 222333345556778888765422 000 0 01 1237888
Q ss_pred EEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCC
Q 028777 97 ASAGPGGFSTVDAICSRARSYGARVLLLTAQPE 129 (204)
Q Consensus 97 ~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~ 129 (204)
+.-.+-....-+ +.++++|..+|. |+...
T Consensus 117 ~vD~G~~~~~~~---~~~~~~g~~vIv-iDHH~ 145 (539)
T TIGR00644 117 TVDNGISAHEEI---DYAKELGIDVIV-TDHHE 145 (539)
T ss_pred EeCCCcccHHHH---HHHHhcCCCEEE-ECCCC
Confidence 777765555443 557888998654 55543
No 118
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=85.71 E-value=14 Score=35.11 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=35.8
Q ss_pred CCCCcEEEEEeCC-CCCH--HHHHHHHHHH-HcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 89 ISSNDLLIASAGP-GGFS--TVDAICSRAR-SYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 89 ~~~~DlvI~iS~s-G~t~--~~~~~~~~ak-~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
+.+-|++|++... ..+. .....+..++ ++|+++|.|- ...+ +.+..||..|.+..
T Consensus 194 ~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivID-Pr~s-~ta~~Ad~~l~i~P 252 (759)
T PRK15488 194 LANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFE-PRFS-VVASKADEWHAIRP 252 (759)
T ss_pred HhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEEC-CCCC-cchhhCCeeeccCC
Confidence 4456788777533 2221 1223344555 8999999996 4556 78999999997754
No 119
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=85.60 E-value=5 Score=35.56 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcC----------CcEEEEecchhHHHHHHHHHHHhhc---CCeEEEecC-------CCCCCCC-CCcEEE
Q 028777 38 MVAELTNTATQK----------GSVFLYGVGREGLMLKALCMRLAHL---GISTHLVFD-------MTTPPIS-SNDLLI 96 (204)
Q Consensus 38 ~l~~~~~~i~~a----------~~I~i~G~G~S~~~a~~~~~~l~~l---g~~~~~~~d-------~~~~~~~-~~DlvI 96 (204)
.++++++.+..+ .-|.=+|.|+|.+--......|..- |..+.+++. .....++ +.+++|
T Consensus 129 ~ikeFsd~i~SG~w~g~tgk~itdVvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfi 208 (546)
T KOG2446|consen 129 HIKEFSDDIRSGSWKGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLFI 208 (546)
T ss_pred HHHHHHHHhhcCCCCCCCCCeeeeEEEecccccccchHHHHHhhccCCCCCceEEEEecCCchhHHHHHhccCccceEEE
Confidence 455556666543 2467889999875444444455433 456777654 1233444 468999
Q ss_pred EEeCCCCCHHHHHHHHHHHH
Q 028777 97 ASAGPGGFSTVDAICSRARS 116 (204)
Q Consensus 97 ~iS~sG~t~~~~~~~~~ak~ 116 (204)
++|.++.|.|++.-++.||+
T Consensus 209 VaSKTftT~ETitnaetak~ 228 (546)
T KOG2446|consen 209 VASKTFTTAETITNAETAKE 228 (546)
T ss_pred EEecCcCcHHHHhhHHHHHH
Confidence 99999999999999988887
No 120
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=85.51 E-value=1.9 Score=35.60 Aligned_cols=56 Identities=9% Similarity=0.027 Sum_probs=46.4
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
.+.+-|++|++-.|+.......+.+.++.+|+++|.|--. .+ ++.+.+|+.|.-+.
T Consensus 201 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~-~t-~~d~~a~~~i~~~~ 256 (260)
T cd01409 201 RLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIG-PT-RADHLATLKVDARC 256 (260)
T ss_pred HHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCC-CC-CCCccccEEEeCCh
Confidence 3456799999999999998899999999999998888754 46 78888998776543
No 121
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=85.43 E-value=4.3 Score=34.23 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecC-CCCCCCCCCcEEEE----EeCCC---CCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 66 ALCMRLAHLGISTHLVFD-MTTPPISSNDLLIA----SAGPG---GFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 66 ~~~~~l~~lg~~~~~~~d-~~~~~~~~~DlvI~----iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.++..|...|+++..+.| .....+.+=|.||+ +...| +.--+..++-.||..++|++.++..
T Consensus 157 ~~a~~L~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~ 226 (301)
T TIGR00511 157 ITAKELRDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAET 226 (301)
T ss_pred HHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEccc
Confidence 455666667888888877 11223344566665 33445 4445667778899999999998754
No 122
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=84.99 E-value=6.5 Score=33.46 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcC------CcEEEEecchhHHHHHHHHHH-HhhcCCeEEEecC--------------------CCCC
Q 028777 35 LDIMVAELTNTATQK------GSVFLYGVGREGLMLKALCMR-LAHLGISTHLVFD--------------------MTTP 87 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a------~~I~i~G~G~S~~~a~~~~~~-l~~lg~~~~~~~d--------------------~~~~ 87 (204)
-++.++.+++.+++. +.|.+++.+.+.....++..+ +..+|.+...... ....
T Consensus 73 WdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (374)
T cd00368 73 WDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLA 152 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCCCCCCCCHH
Confidence 456788888887753 677766655433222222222 3344433222110 0011
Q ss_pred CCCCCcEEEEEeCCC--CCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 88 PISSNDLLIASAGPG--GFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG--~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
.+.+-|+++++-... ........+..++++|+++|.|-... + +.+..+|..+.+..
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~-s-~t~~~ad~~i~i~p 210 (374)
T cd00368 153 DIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRR-T-ETAAKADEWLPIRP 210 (374)
T ss_pred HHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCC-C-cchHhhCEeeCCCC
Confidence 234557777775332 22334566677888999999998654 5 67889999887753
No 123
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=84.42 E-value=2.4 Score=33.97 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEE
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAY 142 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~ 142 (204)
.+.+-|++|++-.|+.....-.+...|+++|+++|.|--. .+ ++...+|+.|.
T Consensus 168 ~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~-~~-~~~~~~~~~i~ 220 (222)
T cd01413 168 AAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNAD-ET-PFDYIADLVIQ 220 (222)
T ss_pred HHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCC-CC-CCCcceeEEEe
Confidence 3456799999999999999999999999999999877644 45 67777887663
No 124
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=84.19 E-value=7.1 Score=36.07 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHH-hhcCCeEEEecC--------------CC---CCCCCCCcEE
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRL-AHLGISTHLVFD--------------MT---TPPISSNDLL 95 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l-~~lg~~~~~~~d--------------~~---~~~~~~~Dlv 95 (204)
.-+++++.+++.+++.+.|.+++.+....-..++..+| ..+|-+-..... .. ...+.+-|++
T Consensus 287 sWdeAl~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~ad~i 366 (603)
T TIGR01973 287 SWAEALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEEADLV 366 (603)
T ss_pred CHHHHHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHhCCEE
Confidence 34678999999999888898887765443333333343 345532111100 00 0112446788
Q ss_pred EEEeCC-CCCHH-HHHHHHHHHHcC-CeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 96 IASAGP-GGFST-VDAICSRARSYG-ARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 96 I~iS~s-G~t~~-~~~~~~~ak~~g-~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
|++... .++.. ....++.++++| +++|.|-. ..+ +.+..||..+.+..
T Consensus 367 l~~G~N~~~s~p~~~~~i~~a~~~ggaklividp-r~s-~ta~~Ad~~l~i~P 417 (603)
T TIGR01973 367 LLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGI-EKW-NLTYPANTNLVFHP 417 (603)
T ss_pred EEEccCchhhhHHHHHHHHHHHhcCCcEEEEECC-ccc-cchhhhccceeecC
Confidence 887643 34332 333445566665 88877764 456 78899999887743
No 125
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=84.00 E-value=2.5 Score=35.08 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=44.8
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchh-hccCeEEEeC
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSV-KHASVVAYVP 144 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~-~~ad~~l~~~ 144 (204)
.+.+-|++|++-.|+.......+...|+++|+++|.|.-.+ + ++. ..+|+.|.-+
T Consensus 196 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~-t-~~~~~~~d~~i~~~ 251 (271)
T PTZ00409 196 EIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISK-T-YITNRISDYHVRAK 251 (271)
T ss_pred HHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCC-C-CCCCccccEEEECc
Confidence 34678999999999999999999999999999999887554 4 565 4688777553
No 126
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=83.94 E-value=7.1 Score=33.17 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCcE-EEEecch--hHHHHHHHHHHHhhcCCeEEEec-----C---CCCCCCCCCcEEEEEeCCCC
Q 028777 35 LDIMVAELTNTATQKGSV-FLYGVGR--EGLMLKALCMRLAHLGISTHLVF-----D---MTTPPISSNDLLIASAGPGG 103 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I-~i~G~G~--S~~~a~~~~~~l~~lg~~~~~~~-----d---~~~~~~~~~DlvI~iS~sG~ 103 (204)
..++++-+-+.+-++++| ++|+.|. |....+.+...+...|+.++... | ......++-|++++-.-.=-
T Consensus 145 v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i 224 (322)
T COG2984 145 VAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLI 224 (322)
T ss_pred HHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHH
Confidence 444555555555689999 9999988 77889999999999999888653 2 12233477788888776666
Q ss_pred CHHHHHHHHHHHHcCCeEEE
Q 028777 104 FSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 104 t~~~~~~~~~ak~~g~~vI~ 123 (204)
...+-.++..+.+.++|+++
T Consensus 225 ~s~~~~l~~~a~~~kiPli~ 244 (322)
T COG2984 225 VSAIESLLQVANKAKIPLIA 244 (322)
T ss_pred HHHHHHHHHHHHHhCCCeec
Confidence 66677778889999999874
No 127
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=83.89 E-value=6.8 Score=33.14 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCeEEEecC-CCCCCCCCCcEEEE----EeCCC---CCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 65 KALCMRLAHLGISTHLVFD-MTTPPISSNDLLIA----SAGPG---GFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 65 ~~~~~~l~~lg~~~~~~~d-~~~~~~~~~DlvI~----iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
..++..|...|+++..+.| .....+.+=|.||+ +...| +.--+..++-.||..++|++.++..
T Consensus 161 ~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~ 231 (310)
T PRK08535 161 HITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAET 231 (310)
T ss_pred HHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEeccc
Confidence 3456667777888888887 11222344566665 33444 4444566778899999999998754
No 128
>PRK09271 flavodoxin; Provisional
Probab=83.39 E-value=17 Score=27.33 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=50.4
Q ss_pred cEEEEec--chhHHHHHHHHHHHhhcCCeEEEec--CCC----CCCCCCCcEEEEEeC---CCCCH-HHHHHHHHHHH--
Q 028777 51 SVFLYGV--GREGLMLKALCMRLAHLGISTHLVF--DMT----TPPISSNDLLIASAG---PGGFS-TVDAICSRARS-- 116 (204)
Q Consensus 51 ~I~i~G~--G~S~~~a~~~~~~l~~lg~~~~~~~--d~~----~~~~~~~DlvI~iS~---sG~t~-~~~~~~~~ak~-- 116 (204)
.+.+||+ |.+..+|+.++..|..-|..+.... +.. ...+.+-|++++.|. .|..+ ++..+++..+.
T Consensus 3 v~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~ 82 (160)
T PRK09271 3 ILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETI 82 (160)
T ss_pred EEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHh
Confidence 3556665 8899999999999999888765432 111 223345588888884 36655 47888777765
Q ss_pred -cCCeEEEEecC
Q 028777 117 -YGARVLLLTAQ 127 (204)
Q Consensus 117 -~g~~vI~iT~~ 127 (204)
+|-++..+...
T Consensus 83 ~~~k~~avfgsg 94 (160)
T PRK09271 83 GKPPNVAVFGTG 94 (160)
T ss_pred ccCCeEEEEecC
Confidence 44445555543
No 129
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=83.22 E-value=14 Score=31.79 Aligned_cols=107 Identities=13% Similarity=0.048 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCC--cEEEEecchhHHHHHHHHHHHh-hcCCeEEEecC----------C--------CCCCCCCCc
Q 028777 35 LDIMVAELTNTATQKG--SVFLYGVGREGLMLKALCMRLA-HLGISTHLVFD----------M--------TTPPISSND 93 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~--~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~~d----------~--------~~~~~~~~D 93 (204)
-++.++.+++.+.+.+ .|.+++.|....-..++..+|. .+|.+...... . ....+.+-|
T Consensus 71 WdeAl~~ia~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad 150 (386)
T cd02768 71 WEEALKTVAEGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEAD 150 (386)
T ss_pred HHHHHHHHHHHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCC
Confidence 4678999999999776 7888877754433333334443 34433221100 0 011224568
Q ss_pred EEEEEeCCC-CCH-HHHHHHHHHHH-cCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 94 LLIASAGPG-GFS-TVDAICSRARS-YGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 94 lvI~iS~sG-~t~-~~~~~~~~ak~-~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
++|++.... .+. -....++.+++ +|+++|.|-... + +. .||..+.+..
T Consensus 151 ~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~-t-~~--~ad~~~~~~p 201 (386)
T cd02768 151 AVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKD-T-DL--IADLTYPVSP 201 (386)
T ss_pred EEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCc-c-cc--ccceEEEcCC
Confidence 888876443 322 23344455644 499988877554 4 45 7898877643
No 130
>PRK08114 cystathionine beta-lyase; Provisional
Probab=82.97 E-value=25 Score=30.86 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHH-----------------------HHHHHHhhcCCeEEEecC----C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLK-----------------------ALCMRLAHLGISTHLVFD----M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~-----------------------~~~~~l~~lg~~~~~~~d----~ 84 (204)
.+...+.+++....|..+...++|+.|.+.+.+- .+...+.+.|+.+..+.. .
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~ 139 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGAD 139 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 4566778888888888888888888888664432 112234567887777642 1
Q ss_pred CCCCCCCCcEEEEEeCCCCC----HHHHHHHHHHHHcCCeEEEEecCCCCc-----chhhccCeEEEeCCc
Q 028777 85 TTPPISSNDLLIASAGPGGF----STVDAICSRARSYGARVLLLTAQPESG-----SSVKHASVVAYVPAQ 146 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS~sG~t----~~~~~~~~~ak~~g~~vI~iT~~~~s~-----~l~~~ad~~l~~~~~ 146 (204)
....+++++-+|.+....+. .++-.+++.||++|-.++.+.++..+. |+.--||+++...++
T Consensus 140 l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tK 210 (395)
T PRK08114 140 IAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTK 210 (395)
T ss_pred HHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcc
Confidence 22345555555555544433 677778899999852223344443321 444459998877653
No 131
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=82.68 E-value=10 Score=33.14 Aligned_cols=114 Identities=14% Similarity=0.179 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC----C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD----M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d----~ 84 (204)
.....+.+++....|.++...++|++|-+.+.+-.+ ...+.+.|+.+.+++. .
T Consensus 53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~ 132 (386)
T PF01053_consen 53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEA 132 (386)
T ss_dssp C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHH
T ss_pred ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHH
Confidence 456677888888888899999999988877644321 1223345666666542 1
Q ss_pred CCCCCCCC-cEEEEEeCCC---CCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCCcc
Q 028777 85 TTPPISSN-DLLIASAGPG---GFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 85 ~~~~~~~~-DlvI~iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~~~ 147 (204)
....++++ .++++=|.+. +..++-.+++.|+++| .++.+.++.- . ||.--||+++...++-
T Consensus 133 l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~-pL~~GaDivv~S~TKy 203 (386)
T PF01053_consen 133 LEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQN-PLELGADIVVHSATKY 203 (386)
T ss_dssp HHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC--GGGGT-SEEEEETTTT
T ss_pred HHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeec-cCcCCceEEEeecccc
Confidence 11223334 4444444433 5667888889999999 3344444432 3 5665699999887643
No 132
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=82.64 E-value=2.2 Score=34.82 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=45.6
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
+.+-|++|++-.|......-.+...++.+|++++.|.-. .+ ++...+|+.+....
T Consensus 176 ~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~-~t-~~d~~~~~~i~~~~ 230 (244)
T PRK14138 176 SSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLG-ET-PLDDIATLKYNMDV 230 (244)
T ss_pred HhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCC-CC-CCCcceeEEEeCCH
Confidence 467799999999999999999999999999999987754 45 67788888776543
No 133
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=82.40 E-value=7.2 Score=33.83 Aligned_cols=110 Identities=10% Similarity=0.102 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh-hcCCeEEEecC--------------CC-C--CCC-CCCcE
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA-HLGISTHLVFD--------------MT-T--PPI-SSNDL 94 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~~d--------------~~-~--~~~-~~~Dl 94 (204)
.-++.++.+++.+.+.++..++|.|.+..-..++..+|. .+|-....... .. . ..+ .+-|+
T Consensus 61 sWdeAl~~ia~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~ 140 (421)
T TIGR03129 61 SYEEAIEKAAEILKNAKRPLIYGWSSTSCEAQRAGLELAEKLGAVIDNTASVCHGPSLLALQEVGWPSCTLGEVKNRADV 140 (421)
T ss_pred ChHHHHHHHHHHHHhhcCCeEEEcccCCHHHHHHHHHHHHHHCCCccccchhccccHHHHHHhcCCccccHHHHhhcCCE
Confidence 355788999999998877777877765443334444443 34432111000 00 0 122 24678
Q ss_pred EEEEeCCC-CCHHH-H--------HHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 95 LIASAGPG-GFSTV-D--------AICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 95 vI~iS~sG-~t~~~-~--------~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
+|++.... .+... . ...+..+++|++++.|- ...+ +.+..||..+.+..
T Consensus 141 il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~livid-p~~s-~t~~~ad~~l~i~p 199 (421)
T TIGR03129 141 IIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVD-PRKT-DTAKLADYHLQIKP 199 (421)
T ss_pred EEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEEC-CCCC-CcchhhcceeccCC
Confidence 88775433 22211 1 11222326788888885 5566 78888999887754
No 134
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.32 E-value=5.2 Score=35.93 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=24.7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+.++|+++|.|.|+.. ++..|...|..+...+
T Consensus 6 ~~~~i~v~G~G~sG~s---~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 6 QGPMVLVLGLGESGLA---MARWCARHGARLRVAD 37 (498)
T ss_pred CCCEEEEEeecHhHHH---HHHHHHHCCCEEEEEc
Confidence 3578999999999953 6667788888776654
No 135
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.18 E-value=5.7 Score=35.23 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+.++|+++|.|.|+..+ +..|...|..+...+
T Consensus 8 ~~~~i~viG~G~~G~~~---a~~l~~~G~~v~~~D 39 (460)
T PRK01390 8 AGKTVAVFGLGGSGLAT---ARALVAGGAEVIAWD 39 (460)
T ss_pred CCCEEEEEeecHhHHHH---HHHHHHCCCEEEEEC
Confidence 35789999999999764 555778888776654
No 136
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=81.99 E-value=4.9 Score=27.70 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=46.9
Q ss_pred EEEEecch-hHHHHHHHHHHHhhcCCeEEEecC---CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 52 VFLYGVGR-EGLMLKALCMRLAHLGISTHLVFD---MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 52 I~i~G~G~-S~~~a~~~~~~l~~lg~~~~~~~d---~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+.++|.|- |+.+++.+...+...|+++.+..- .......+-|++++-..-.+ ..-++-+.+...++|+..|-..
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~--~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRY--MLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHH--HHHHHHHHhccCCCcEEEcChH
Confidence 46788887 567888888888888887655331 11123455676666443332 2222333456688998888766
Q ss_pred CCC
Q 028777 128 PES 130 (204)
Q Consensus 128 ~~s 130 (204)
...
T Consensus 81 ~Y~ 83 (96)
T cd05564 81 DYG 83 (96)
T ss_pred hcc
Confidence 544
No 137
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=81.53 E-value=4.6 Score=28.20 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=45.9
Q ss_pred EEEEecch-hHHHHHHHHHHHhhcCCeEEEec--C-CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 52 VFLYGVGR-EGLMLKALCMRLAHLGISTHLVF--D-MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 52 I~i~G~G~-S~~~a~~~~~~l~~lg~~~~~~~--d-~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
+.++|.|. |..+++.+...+..-|+++.... . .....+++-|+++..-+-.+ ..-++-+.+...|+|+..|..
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~--~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMAS--YYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHH--HHHHHHHHhhhcCCCEEEeCH
Confidence 35667776 67889999998888888766532 1 12223455576655433322 233344567788999988873
No 138
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=81.45 E-value=33 Score=30.14 Aligned_cols=114 Identities=15% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHH-----------------------HHHHHHhhcCCeEEEecCC----C
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLK-----------------------ALCMRLAHLGISTHLVFDM----T 85 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~-----------------------~~~~~l~~lg~~~~~~~d~----~ 85 (204)
+...+.+++....+..+...+.|.+|-+.+.+- .+...|.+.|+.+..+.+. .
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~ 141 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEAL 141 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHH
Confidence 456778889999999999999999998776552 2333445788888877641 1
Q ss_pred CCCCC--CCcEEEEEeCCC---CCHHHHHHHHHHHHcCCeEEEEecCCCCc-----chhhccCeEEEeCCccc
Q 028777 86 TPPIS--SNDLLIASAGPG---GFSTVDAICSRARSYGARVLLLTAQPESG-----SSVKHASVVAYVPAQTM 148 (204)
Q Consensus 86 ~~~~~--~~DlvI~iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~~~~s~-----~l~~~ad~~l~~~~~~~ 148 (204)
...+. +-+++++=|-|- +-.++-.+++.|+++| ++.+.+|.-.+ ||.--||++++..++-.
T Consensus 142 ~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g--~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl 212 (396)
T COG0626 142 EAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYG--ALVVVDNTFATPVLQRPLELGADIVVHSATKYL 212 (396)
T ss_pred HHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcC--CEEEEECCcccccccChhhcCCCEEEEeccccc
Confidence 12222 345555555544 3345666778889999 44454553332 55555999998876443
No 139
>PRK06242 flavodoxin; Provisional
Probab=81.24 E-value=12 Score=27.45 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=45.3
Q ss_pred cchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeC---CCCCHHHHHHHHHHHH-cCCeEEEEecCCCC
Q 028777 57 VGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAG---PGGFSTVDAICSRARS-YGARVLLLTAQPES 130 (204)
Q Consensus 57 ~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~---sG~t~~~~~~~~~ak~-~g~~vI~iT~~~~s 130 (204)
.|.+..+|+.++..| +..+.-+.+.....+.+-|.+|+.|- .+-.+.+.+.++.... .|-+++.++.....
T Consensus 12 tGnT~~~A~~ia~~l---~~~~~~i~~~~~~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~~ 86 (150)
T PRK06242 12 HGNTEKIAKAIAEVL---DAEVIDPGDVNPEDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGLP 86 (150)
T ss_pred CCCHHHHHHHHHHhc---CcEEecHHHCCcccHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCCC
Confidence 478999999998877 33444333333345667788888773 3455666666666544 57777777665443
No 140
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=80.79 E-value=14 Score=29.12 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHHHHHh-hcCCeEEEecC---CCCCCCCCCcEEEEEeCCCC--CHHHHHHHHHHHHcCCeEEEEe
Q 028777 62 LMLKALCMRLA-HLGISTHLVFD---MTTPPISSNDLLIASAGPGG--FSTVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 62 ~~a~~~~~~l~-~lg~~~~~~~d---~~~~~~~~~DlvI~iS~sG~--t~~~~~~~~~ak~~g~~vI~iT 125 (204)
.....+...|. .-|+.+....+ .....+..=|++|+.+..|. +.+-.++++..-++|..+|++=
T Consensus 19 ~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 19 AAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred HHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 34445556666 57888887665 22235778899999999984 8888999999999999999997
No 141
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=80.60 E-value=10 Score=30.93 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=51.4
Q ss_pred HhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC--C-C-------------------CCCCCCCcEEEEEeCCCC
Q 028777 46 ATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD--M-T-------------------TPPISSNDLLIASAGPGG 103 (204)
Q Consensus 46 i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d--~-~-------------------~~~~~~~DlvI~iS~sG~ 103 (204)
+....++++||.|. +|+.++.....+|+.+.++++ . . ...++++|.+++.++...
T Consensus 97 ~~p~~~L~IfGaG~---va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~ 173 (246)
T TIGR02964 97 APPAPHVVLFGAGH---VGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHA 173 (246)
T ss_pred cCCCCEEEEECCcH---HHHHHHHHHhcCCCEEEEEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChH
Confidence 34568999999886 566777778889999998765 0 0 012346777777777555
Q ss_pred CHHHHHHHHHHH-HcCCeEEEEecCC
Q 028777 104 FSTVDAICSRAR-SYGARVLLLTAQP 128 (204)
Q Consensus 104 t~~~~~~~~~ak-~~g~~vI~iT~~~ 128 (204)
.... +++.+- +..+..|++-++.
T Consensus 174 ~D~~--~L~~aL~~~~~~YIG~lGSr 197 (246)
T TIGR02964 174 LDLE--LCHAALRRGDFAYFGLIGSK 197 (246)
T ss_pred HHHH--HHHHHHhCCCCcEEEEeCCH
Confidence 4432 444443 5667677777663
No 142
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=80.44 E-value=6.1 Score=30.39 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=26.1
Q ss_pred CCCCcEEEEEeCCCCCHH-HHHHHHHHHHcCCeEEEE
Q 028777 89 ISSNDLLIASAGPGGFST-VDAICSRARSYGARVLLL 124 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~-~~~~~~~ak~~g~~vI~i 124 (204)
+-.+|++++.=..|.|-. +..++++|+++|+.+|+-
T Consensus 104 ll~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 104 LLKGDVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred hhcCCEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 346677776666676654 466779999999998863
No 143
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=80.44 E-value=6.1 Score=35.09 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=22.7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+.++|+++|.|.|+..+ ++..|...|..+...+
T Consensus 6 ~~~~v~viG~G~sG~s~--~a~~L~~~G~~V~~~D 38 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSG--LAEVLLNLGYKVSGSD 38 (461)
T ss_pred CCCEEEEEEEchhhHHH--HHHHHHhCCCeEEEEC
Confidence 45689999999998763 2333556777766544
No 144
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=80.04 E-value=5.9 Score=29.28 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=45.9
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecCC-------------------CCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFDM-------------------TTPPISSNDLLIASAGPGGFSTVDAICS 112 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~-------------------~~~~~~~~DlvI~iS~sG~t~~~~~~~~ 112 (204)
++++|.|. +++.+......+|+.+.++++- ....+++++.| +++.++.... .+++
T Consensus 1 L~I~GaG~---va~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~V-v~th~h~~D~--~~L~ 74 (136)
T PF13478_consen 1 LVIFGAGH---VARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAV-VMTHDHELDA--EALE 74 (136)
T ss_dssp EEEES-ST---CHHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EE-E--S-CCCHH--HHHH
T ss_pred CEEEeCcH---HHHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEE-EEcCCchhHH--HHHH
Confidence 47888887 4555666777889999988650 01256788876 6888877766 5788
Q ss_pred HHHHcCCeEEEEecCCC
Q 028777 113 RARSYGARVLLLTAQPE 129 (204)
Q Consensus 113 ~ak~~g~~vI~iT~~~~ 129 (204)
.+-+.++..|++-++..
T Consensus 75 ~~l~~~~~YiG~lGS~~ 91 (136)
T PF13478_consen 75 AALASPARYIGLLGSRR 91 (136)
T ss_dssp HHTTSS-SEEEESS-HH
T ss_pred HHHcCCCCEEEeecCch
Confidence 88888999999987754
No 145
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=79.87 E-value=23 Score=28.50 Aligned_cols=78 Identities=8% Similarity=-0.050 Sum_probs=47.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCC----------------CCCCCCCCc---EEEEEeCCCCCHHHH
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDM----------------TTPPISSND---LLIASAGPGGFSTVD 108 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~----------------~~~~~~~~D---lvI~iS~sG~t~~~~ 108 (204)
+.++|.++|.|.-. .-=...|...|-.+.++.+. ......++| ..+++..++...---
T Consensus 24 ~~~~VLVVGGG~VA---~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~ 100 (223)
T PRK05562 24 NKIKVLIIGGGKAA---FIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNN 100 (223)
T ss_pred CCCEEEEECCCHHH---HHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHH
Confidence 46789999988733 22223455567777776531 111222232 366666677665556
Q ss_pred HHHHHHHHcCCeEEEEecCC
Q 028777 109 AICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 109 ~~~~~ak~~g~~vI~iT~~~ 128 (204)
.+.+.|+++|+.+..+.+.+
T Consensus 101 ~I~~~a~~~~~lvn~vd~p~ 120 (223)
T PRK05562 101 KIRKHCDRLYKLYIDCSDYK 120 (223)
T ss_pred HHHHHHHHcCCeEEEcCCcc
Confidence 67788999999877665543
No 146
>PRK08105 flavodoxin; Provisional
Probab=79.12 E-value=7.9 Score=28.93 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=34.4
Q ss_pred cEEEEec--chhHHHHHHHHHHHhhcCCeEEEecCCCCCCC--C-CCcEEEEEeCCC
Q 028777 51 SVFLYGV--GREGLMLKALCMRLAHLGISTHLVFDMTTPPI--S-SNDLLIASAGPG 102 (204)
Q Consensus 51 ~I~i~G~--G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~--~-~~DlvI~iS~sG 102 (204)
-.++||+ |.+..+|+.++..|...|..+..........+ . .+-++|+.|..|
T Consensus 4 i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G 60 (149)
T PRK08105 4 VGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTG 60 (149)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCC
Confidence 4567777 77999999999999999988876653111122 2 244555555545
No 147
>PRK05723 flavodoxin; Provisional
Probab=79.08 E-value=5.5 Score=29.94 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=36.7
Q ss_pred EEEEec--chhHHHHHHHHHHHhhcCCeEEEecCCC---CCCCCCCcEEEEEeCCCCC
Q 028777 52 VFLYGV--GREGLMLKALCMRLAHLGISTHLVFDMT---TPPISSNDLLIASAGPGGF 104 (204)
Q Consensus 52 I~i~G~--G~S~~~a~~~~~~l~~lg~~~~~~~d~~---~~~~~~~DlvI~iS~sG~t 104 (204)
.++||+ |.+..+|+.++.+|...|..+....+.. ......+.++|+.|..|.=
T Consensus 4 ~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~~~~~~~~li~~~sT~G~G 61 (151)
T PRK05723 4 AILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLQAFAPEALLAVTSTTGMG 61 (151)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCHhHHHhCCCCeEEEEECCCCCC
Confidence 456787 8899999999999999888876644311 1122346677777776654
No 148
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=79.05 E-value=18 Score=32.09 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC-----CC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD-----MT 85 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d-----~~ 85 (204)
...+.+++....+.+++...+++.|.+.+.+-.. ...+.+.|+.+..+.+ ..
T Consensus 69 p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l 148 (436)
T PRK07812 69 PTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAW 148 (436)
T ss_pred chHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHH
Confidence 4455677777777777788888888765432211 1123346666666643 11
Q ss_pred CCCCCCCc-EEEEEeCC---CCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 86 TPPISSND-LLIASAGP---GGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~D-lvI~iS~s---G~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
...++++. ++++-+.+ |.-.++-++.+.|+++|+.+| .++. .. |+..-+|+++...+
T Consensus 149 ~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~li--VD~t~a~~~~~~-pl~~GaDivv~S~t 215 (436)
T PRK07812 149 RAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLI--VDNTIATPYLIR-PLEHGADIVVHSAT 215 (436)
T ss_pred HHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE--EECCCcccccCC-chhcCCCEEEEecc
Confidence 22345554 45544444 888899999999999998654 3442 23 55556898886644
No 149
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=78.99 E-value=12 Score=35.65 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=34.2
Q ss_pred CCCcEEEEEeCC-CCCH-----HHHHHHHHHHHcCCeEEEEecCCCCcchh-hccCeEEEeCC
Q 028777 90 SSNDLLIASAGP-GGFS-----TVDAICSRARSYGARVLLLTAQPESGSSV-KHASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS~s-G~t~-----~~~~~~~~ak~~g~~vI~iT~~~~s~~l~-~~ad~~l~~~~ 145 (204)
..-|++|++... ..+. .....++.++++|+++|.|-... + +.+ ..||..|.+..
T Consensus 213 ~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~-t-~taa~~Ad~~l~irP 273 (797)
T TIGR02166 213 ENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRY-T-DTVAGREDEWIPIRP 273 (797)
T ss_pred HhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCC-C-ccchhcCCEEECCCC
Confidence 345777777544 3332 22345555668999999996554 4 454 68999887744
No 150
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=78.89 E-value=6.1 Score=31.49 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=42.5
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEE
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAY 142 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~ 142 (204)
.+-|+++++-.|+.....-.+++.++++|+++|.|--.+ + +..+.+|+.+.
T Consensus 166 ~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~-~-~~~~~~d~~~~ 216 (218)
T cd01407 166 AKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEP-T-PADRKADLVIL 216 (218)
T ss_pred hcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCC-C-CCCccceEEEe
Confidence 456999999999999999999999999999999887554 4 56777887664
No 151
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=78.72 E-value=5.4 Score=32.51 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=43.0
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEE
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAY 142 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~ 142 (204)
+.+-|++|++-.|+.......+...|+++|++++.|--.+.. ....+|..+.
T Consensus 170 ~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~--~~~~~~~~i~ 221 (242)
T PTZ00408 170 MSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGT--NYSQFDESIY 221 (242)
T ss_pred HHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCC--CCccCCEEEE
Confidence 567899999999999999999999999999999998866544 4456676554
No 152
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=78.68 E-value=28 Score=27.50 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=49.0
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCC----------------CCCCCC---CcEEEEEeCCCCCHHHH
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMT----------------TPPISS---NDLLIASAGPGGFSTVD 108 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~----------------~~~~~~---~DlvI~iS~sG~t~~~~ 108 (204)
+.++|.++|.|.++. .-...|...|-.+.++++.. .....+ .+..+++..+|...--.
T Consensus 8 ~gk~vlVvGgG~va~---rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 8 EGRAVLVVGGGDVAL---RKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNR 84 (205)
T ss_pred CCCeEEEECcCHHHH---HHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHH
Confidence 568999999998653 23345556777777664300 011111 24466777788876667
Q ss_pred HHHHHHHHcCCeEEEEecC
Q 028777 109 AICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 109 ~~~~~ak~~g~~vI~iT~~ 127 (204)
.+...|+++|+.+-.....
T Consensus 85 ~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 85 RVAHAARARGVPVNVVDDP 103 (205)
T ss_pred HHHHHHHHcCCEEEECCCc
Confidence 7889999999987555433
No 153
>smart00642 Aamy Alpha-amylase domain.
Probab=78.21 E-value=9.4 Score=29.14 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHHHhhcCCeEEEecCCCCCC--------CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE-EecCC
Q 028777 58 GREGLMLKALCMRLAHLGISTHLVFDMTTPP--------ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLL-LTAQP 128 (204)
Q Consensus 58 G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~--------~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~-iT~~~ 128 (204)
|.=.-+++.+. .|..+|+.++.+.+..... -...|..-+=+.-|...+..++++.|+++|+++|. +.-+.
T Consensus 16 G~~~gi~~~l~-yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 16 GDLQGIIEKLD-YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred cCHHHHHHHHH-HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 33334555555 7889999999887632111 12223333334558889999999999999999883 44444
Q ss_pred CC
Q 028777 129 ES 130 (204)
Q Consensus 129 ~s 130 (204)
.+
T Consensus 95 ~~ 96 (166)
T smart00642 95 TS 96 (166)
T ss_pred CC
Confidence 44
No 154
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=78.12 E-value=22 Score=25.51 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=47.1
Q ss_pred ecchhHHHHHHHHHHHhhcCCeEEEec--CCCCCCCCCCcEEEEEeCC---CCC--HHHHHHHHHHHH---cCCeEEEEe
Q 028777 56 GVGREGLMLKALCMRLAHLGISTHLVF--DMTTPPISSNDLLIASAGP---GGF--STVDAICSRARS---YGARVLLLT 125 (204)
Q Consensus 56 G~G~S~~~a~~~~~~l~~lg~~~~~~~--d~~~~~~~~~DlvI~iS~s---G~t--~~~~~~~~~ak~---~g~~vI~iT 125 (204)
..|.+..+|+.+...+...|..+...+ +.....+.+-|.+|+.|-+ |.. ..+...++.... .|.++..++
T Consensus 8 ~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfg 87 (140)
T TIGR01753 8 MTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFG 87 (140)
T ss_pred CCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEe
Confidence 358899999999999988887776544 2222344567888888765 444 355666665553 455565555
Q ss_pred cC
Q 028777 126 AQ 127 (204)
Q Consensus 126 ~~ 127 (204)
..
T Consensus 88 t~ 89 (140)
T TIGR01753 88 SG 89 (140)
T ss_pred cC
Confidence 43
No 155
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=77.67 E-value=25 Score=25.67 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=48.7
Q ss_pred EEEEec--chhHHHHHHHHHHHhhcCCeEEEe---cC--CCCCCCCCCcEEEEEeC---CCCCH-HHHHHHHHHHHcCCe
Q 028777 52 VFLYGV--GREGLMLKALCMRLAHLGISTHLV---FD--MTTPPISSNDLLIASAG---PGGFS-TVDAICSRARSYGAR 120 (204)
Q Consensus 52 I~i~G~--G~S~~~a~~~~~~l~~lg~~~~~~---~d--~~~~~~~~~DlvI~iS~---sG~t~-~~~~~~~~ak~~g~~ 120 (204)
..+|++ |.+..+|+.++..+..-|..+... .+ .....+.+-|++|+.|. .|..+ .+...++....+|-+
T Consensus 4 ~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~ 83 (140)
T TIGR01754 4 LLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSN 83 (140)
T ss_pred EEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCE
Confidence 456665 889999999999998878766422 21 11123344577777774 44554 678888877666655
Q ss_pred EEEEecC
Q 028777 121 VLLLTAQ 127 (204)
Q Consensus 121 vI~iT~~ 127 (204)
+..+...
T Consensus 84 ~avfgtg 90 (140)
T TIGR01754 84 VAIFGTG 90 (140)
T ss_pred EEEEEcC
Confidence 5555544
No 156
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.47 E-value=8.8 Score=34.30 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=23.8
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+.++|.++|.|.|+..|-.+ |.+.|..+.+..
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~---l~~~g~~v~~~d 38 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRA---LRAHLPAQALTL 38 (468)
T ss_pred CCCEEEEEccchhhHHHHHH---HHHcCCEEEEEc
Confidence 35789999999999876555 556777666644
No 157
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=76.91 E-value=9.1 Score=33.86 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=21.8
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+|+++|.|++++.+ ++..|.+.|..+...+
T Consensus 1 ~~hfigigG~gm~~--la~~l~~~G~~V~~~D 30 (448)
T TIGR01081 1 HIHILGICGTFMGG--LAMIAKQLGHEVTGSD 30 (448)
T ss_pred CEEEEEECHHhHHH--HHHHHHhCCCEEEEEC
Confidence 58999999988766 5566667777766543
No 158
>PRK05569 flavodoxin; Provisional
Probab=76.80 E-value=13 Score=27.03 Aligned_cols=77 Identities=6% Similarity=0.091 Sum_probs=50.6
Q ss_pred EEEecchhHHHHHHHHHHHhhcCCeEEEec--CCCCCCCCCCcEEEEEeCC--CC-C--HHHHHHHHHHHH---cCCeEE
Q 028777 53 FLYGVGREGLMLKALCMRLAHLGISTHLVF--DMTTPPISSNDLLIASAGP--GG-F--STVDAICSRARS---YGARVL 122 (204)
Q Consensus 53 ~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~--d~~~~~~~~~DlvI~iS~s--G~-t--~~~~~~~~~ak~---~g~~vI 122 (204)
|.-+.|.+..+|+.++..+...|..+.... +.....+.+-|.+|+.|-+ +. . +.+..+++..+. +|-+++
T Consensus 8 Y~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~ 87 (141)
T PRK05569 8 YWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCI 87 (141)
T ss_pred EECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEE
Confidence 344457799999999999988887655433 2222345677888888854 43 2 456677776653 466777
Q ss_pred EEecCCC
Q 028777 123 LLTAQPE 129 (204)
Q Consensus 123 ~iT~~~~ 129 (204)
.++....
T Consensus 88 ~f~t~g~ 94 (141)
T PRK05569 88 LFGSYGW 94 (141)
T ss_pred EEeCCCC
Confidence 7776543
No 159
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=76.47 E-value=6.4 Score=30.79 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCcEEEEecchhH--HHHHHHHHHHhhcCCeEEEecC-CCCCCCCCCcEEEEEeCCCCCHHHHHHHH---H
Q 028777 40 AELTNTATQKGSVFLYGVGREG--LMLKALCMRLAHLGISTHLVFD-MTTPPISSNDLLIASAGPGGFSTVDAICS---R 113 (204)
Q Consensus 40 ~~~~~~i~~a~~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d-~~~~~~~~~DlvI~iS~sG~t~~~~~~~~---~ 113 (204)
++....-.++..|++.|.-.|+ .+|..+..+|...|..+++++- .....++++ +.||.-+....+...++ .
T Consensus 14 ~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~d---LgFs~edR~eniRRvaevAkl 90 (197)
T COG0529 14 EREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRD---LGFSREDRIENIRRVAEVAKL 90 (197)
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCC---CCCChHHHHHHHHHHHHHHHH
Confidence 3334444456688888875543 5899999999999999999863 322333333 34555555555544444 4
Q ss_pred HHHcCC
Q 028777 114 ARSYGA 119 (204)
Q Consensus 114 ak~~g~ 119 (204)
..+.|.
T Consensus 91 l~daG~ 96 (197)
T COG0529 91 LADAGL 96 (197)
T ss_pred HHHCCe
Confidence 444555
No 160
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=76.19 E-value=15 Score=31.90 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhc----C--CcEEEEecch-hHHHHHHHHHHH-hhcCCe-EEEec---CCC----------------C-
Q 028777 36 DIMVAELTNTATQ----K--GSVFLYGVGR-EGLMLKALCMRL-AHLGIS-THLVF---DMT----------------T- 86 (204)
Q Consensus 36 ~~~l~~~~~~i~~----a--~~I~i~G~G~-S~~~a~~~~~~l-~~lg~~-~~~~~---d~~----------------~- 86 (204)
+++++.+++.|++ . ++|.+++.|. +..-..++..+| ..+|-+ ..... +.. .
T Consensus 23 deAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 102 (432)
T PF00384_consen 23 DEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQCDTCMASAAEAFGGDFVGGPAF 102 (432)
T ss_dssp HHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEGGGCTTHHHHHHHSSHSHTSSSC
T ss_pred HHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhheecccccCccc
Confidence 4577777777764 3 4577666644 434444444444 455552 22211 110 0
Q ss_pred ----CCCCCCcEEEEEeCCCCCHH-H--HHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCc
Q 028777 87 ----PPISSNDLLIASAGPGGFST-V--DAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 87 ----~~~~~~DlvI~iS~sG~t~~-~--~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~ 146 (204)
..+.+-|++|++........ . ....+.++++|+++|.|-.. .+ +.+..||..|.+...
T Consensus 103 ~~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~-~t-~~a~~ad~~i~i~PG 167 (432)
T PF00384_consen 103 GNPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPR-RT-PTAAKADEWIPIRPG 167 (432)
T ss_dssp CSHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESS-B--HHGGGTSEEEEE-TT
T ss_pred ccccceeeccceEEEcccCccccccccccccccccccCCcceEEEEec-cc-hhhhhcccccccccc
Confidence 02445577777765443222 2 35567789999999999855 45 689999999988543
No 161
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.59 E-value=11 Score=33.19 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=20.4
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+|+++|.|.|+..| ++.|...|..+...+
T Consensus 2 ~v~viG~G~sG~s~---a~~l~~~G~~V~~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAA---ARLLKAQGWEVVVSD 30 (459)
T ss_pred eEEEEccCHHHHHH---HHHHHHCCCEEEEEC
Confidence 68999999999875 444556676655543
No 162
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=75.33 E-value=11 Score=32.69 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh-hcCC----eEEE-ecC---------C---CCCCC-CCCcE
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA-HLGI----STHL-VFD---------M---TTPPI-SSNDL 94 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~-~lg~----~~~~-~~d---------~---~~~~~-~~~Dl 94 (204)
...++++++++.|.+|+|-.+||.+.+..=|+.+.-+|. .+|- ++.+ +++ . ..... +..||
T Consensus 64 ~~deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gaviD~~asvchGp~~~alqe~g~p~~TlgevKNraDv 143 (429)
T COG1029 64 DYDEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADV 143 (429)
T ss_pred cHHHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEecCCCccccchHHHHHHhcCCcccchhhhcccccE
Confidence 567799999999999999999999998888887777665 3331 1111 111 0 11112 45688
Q ss_pred EEEEeCCCCCHHHHHHHH-------HHHHc--CCeEEEEecCCCCcchhhccCeEEEeCCc
Q 028777 95 LIASAGPGGFSTVDAICS-------RARSY--GARVLLLTAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 95 vI~iS~sG~t~~~~~~~~-------~ak~~--g~~vI~iT~~~~s~~l~~~ad~~l~~~~~ 146 (204)
+|.--........-.+-+ +.+++ .=.++...+...+ +-+++||+.+.+...
T Consensus 144 iVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT-~TAklad~~~qi~p~ 203 (429)
T COG1029 144 IVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKT-ATAKLADNHVQIKPN 203 (429)
T ss_pred EEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcC-chhhhhhheEecCCC
Confidence 887655544333333333 22333 2345556667777 899999999988643
No 163
>PRK06756 flavodoxin; Provisional
Probab=75.29 E-value=27 Score=25.67 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=49.0
Q ss_pred EEEecchhHHHHHHHHHHHhhcCCeEEEecC--C-CCCCCCCCcEEEEEeCC---CCCHH-HHHHHHHHHH---cCCeEE
Q 028777 53 FLYGVGREGLMLKALCMRLAHLGISTHLVFD--M-TTPPISSNDLLIASAGP---GGFST-VDAICSRARS---YGARVL 122 (204)
Q Consensus 53 ~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d--~-~~~~~~~~DlvI~iS~s---G~t~~-~~~~~~~ak~---~g~~vI 122 (204)
|.-..|.+..+|+.++..|..-|..+...+- . ....+.+-|.+|+.|.+ |..+. +.+.++..+. +|-++.
T Consensus 8 Y~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~ 87 (148)
T PRK06756 8 FASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAA 87 (148)
T ss_pred EECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEE
Confidence 3334588999999999999888887765432 1 12345567888888765 34554 7777666532 466666
Q ss_pred EEec
Q 028777 123 LLTA 126 (204)
Q Consensus 123 ~iT~ 126 (204)
.+.+
T Consensus 88 ~fgt 91 (148)
T PRK06756 88 VFGS 91 (148)
T ss_pred EEeC
Confidence 6655
No 164
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=74.92 E-value=24 Score=30.92 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=19.2
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEe
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLV 81 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~ 81 (204)
+|+++|.|.|++ -++..|...|..+...
T Consensus 1 ~~~~iG~G~~G~---a~a~~l~~~G~~V~~s 28 (433)
T TIGR01087 1 KILILGLGKTGR---AVARFLHKKGAEVTVT 28 (433)
T ss_pred CEEEEEeCHhHH---HHHHHHHHCCCEEEEE
Confidence 588999999887 2444566667665553
No 165
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=74.81 E-value=57 Score=32.97 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=35.7
Q ss_pred CcEEEEE-eCCCCCH-HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 92 NDLLIAS-AGPGGFS-TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 92 ~DlvI~i-S~sG~t~-~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
-+++|+. ++...+. .....+..++++|+++|.|.... + +.++.||..|.+..
T Consensus 246 S~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~-t-~tA~~AD~WLpIrP 299 (1235)
T TIGR01580 246 SSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDY-A-EIAKLCDLWLAPKQ 299 (1235)
T ss_pred CCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCC-C-hhhHhhCEEeCCCC
Confidence 3455555 4434442 23456677999999999998654 5 68899999887744
No 166
>PTZ00445 p36-lilke protein; Provisional
Probab=74.81 E-value=18 Score=29.00 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=54.4
Q ss_pred HHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec-C-CCCC-----CCCCC-cE-EEEEeCCCCCHHHHHHHH
Q 028777 42 LTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF-D-MTTP-----PISSN-DL-LIASAGPGGFSTVDAICS 112 (204)
Q Consensus 42 ~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~-d-~~~~-----~~~~~-Dl-vI~iS~sG~t~~~~~~~~ 112 (204)
..+++...-..+.+-.=...-.|.-|...|...|+.+++.+ | .... ..+++ |. .++-| -+++...+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~---~tpefk~~~~ 85 (219)
T PTZ00445 9 FHDAFKEYIESGLFDHLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTS---VTPDFKILGK 85 (219)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhcc---CCHHHHHHHH
Confidence 33344333333333333556688889999999999999865 2 1111 22232 22 22222 3577888999
Q ss_pred HHHHcCCeEEEEecCCCC
Q 028777 113 RARSYGARVLLLTAQPES 130 (204)
Q Consensus 113 ~ak~~g~~vI~iT~~~~s 130 (204)
.+++.|++++.+|-.++.
T Consensus 86 ~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 86 RLKNSNIKISVVTFSDKE 103 (219)
T ss_pred HHHHCCCeEEEEEccchh
Confidence 999999999999987764
No 167
>PRK06703 flavodoxin; Provisional
Probab=74.44 E-value=28 Score=25.63 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=47.2
Q ss_pred EEEEe--cchhHHHHHHHHHHHhhcCCeEEEec--CCCCCCCCCCcEEEEEeCC---CCCH-HHHHHHHHHHH---cCCe
Q 028777 52 VFLYG--VGREGLMLKALCMRLAHLGISTHLVF--DMTTPPISSNDLLIASAGP---GGFS-TVDAICSRARS---YGAR 120 (204)
Q Consensus 52 I~i~G--~G~S~~~a~~~~~~l~~lg~~~~~~~--d~~~~~~~~~DlvI~iS~s---G~t~-~~~~~~~~ak~---~g~~ 120 (204)
+.+|+ .|.+..+|+.++..|...|..+.... +.....+.+.|++|+.|.+ |..+ .+...++..++ +|.+
T Consensus 5 ~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~ 84 (151)
T PRK06703 5 LIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKK 84 (151)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCE
Confidence 44555 47799999999999988887766543 2222345566778877753 4444 46666665542 3556
Q ss_pred EEEEe
Q 028777 121 VLLLT 125 (204)
Q Consensus 121 vI~iT 125 (204)
+..+.
T Consensus 85 ~~vfg 89 (151)
T PRK06703 85 VAVFG 89 (151)
T ss_pred EEEEc
Confidence 65554
No 168
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=74.36 E-value=22 Score=34.14 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
-++|+++|.|.|+..| ++..|...|..+...+
T Consensus 4 ~~~i~viG~G~sG~sa--lA~~L~~~G~~V~~sD 35 (809)
T PRK14573 4 SLFYHFIGIGGIGMSA--LAHILLDRGYSVSGSD 35 (809)
T ss_pred cceEEEEEecHHhHHH--HHHHHHHCCCeEEEEC
Confidence 4679999999999766 2333566676666543
No 169
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=74.30 E-value=39 Score=30.58 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhc---CCcEEEEecchhHHHHHHHHHHHhh--cCCeEEEecC------------------CCCCCCC
Q 028777 34 PLDIMVAELTNTATQ---KGSVFLYGVGREGLMLKALCMRLAH--LGISTHLVFD------------------MTTPPIS 90 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~---a~~I~i~G~G~S~~~a~~~~~~l~~--lg~~~~~~~d------------------~~~~~~~ 90 (204)
.-++.++.+++.+++ .+.+.+++.+.......++..+|.+ .|-+...... .....+.
T Consensus 116 SWdeAld~ia~~l~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~D~~ 195 (524)
T cd02764 116 DWADFDAKVAEQLKAVKDGGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVYDPLSAEDVNEAWQASFGKDVVPGYDFD 195 (524)
T ss_pred CHHHHHHHHHHHHHHhhcCCcEEEEeCCCCCchHHHHHHHHHHhCCCCceeeECCCChHHHHHHHHHHcCCCCCCCcChh
Confidence 345677777777764 5577666544333333455556654 2333222111 0012334
Q ss_pred CCcEEEEEeCCC-CCH----HHHHHHHHHHHcC-----CeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 91 SNDLLIASAGPG-GFS----TVDAICSRARSYG-----ARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 91 ~~DlvI~iS~sG-~t~----~~~~~~~~ak~~g-----~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
+-|++|++.... ++. ........++++| +++|.|- ...+ ..+..||..+.+..
T Consensus 196 ~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviD-Pr~s-~ta~~Ad~~l~irP 258 (524)
T cd02764 196 KAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAE-SVYT-LTGANADVRLAIRP 258 (524)
T ss_pred HCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEe-cCCC-chhhhhcceeccCc
Confidence 557777775443 331 1223334566655 4888886 4455 68889999887754
No 170
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=73.75 E-value=23 Score=29.91 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=48.7
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEecC----------------------------CCCCCCCCCcEEEEEeCCC
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVFD----------------------------MTTPPISSNDLLIASAGPG 102 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d----------------------------~~~~~~~~~DlvI~iS~sG 102 (204)
||.|+|.|. ++.++.++|.+.|-.+.++.. .......+-|++|+...+.
T Consensus 2 kI~IlGaGA---vG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~ 78 (307)
T COG1893 2 KILILGAGA---IGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY 78 (307)
T ss_pred eEEEECCcH---HHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc
Confidence 688888876 556666677766633333211 0112345789999999999
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 103 GFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 103 ~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.+.+.++.++..-.....++.+-+.
T Consensus 79 q~~~al~~l~~~~~~~t~vl~lqNG 103 (307)
T COG1893 79 QLEEALPSLAPLLGPNTVVLFLQNG 103 (307)
T ss_pred cHHHHHHHhhhcCCCCcEEEEEeCC
Confidence 9999998887766655554444433
No 171
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=73.01 E-value=8 Score=31.92 Aligned_cols=112 Identities=8% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCC
Q 028777 9 MSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPP 88 (204)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~ 88 (204)
.+...+...+.++.+++.+... .++..+...+.|.+..+|..+|. |..+...+.. ....|+...++
T Consensus 72 ~~~~~~~l~~~i~~~~~e~~~~----~~~I~~~~~~~I~~~~~ILT~~~--S~~v~~~l~~-a~~~~~~~~V~------- 137 (282)
T PF01008_consen 72 FEEAKQSLLEAIDEFLDEIEQA----REKIADHASELINDGDTILTHGY--SSTVERFLLS-AKKKGKKFRVI------- 137 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCC-TTEEEEEES----SHHHHHHHH-HHHTTEEEEEE-------
T ss_pred hHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHhccCCeEEEEeCC--chHHHHHHHH-HHHcCCeEEEE-------
Confidence 3444445555555555553321 22234444555566777777774 4445554444 33434322221
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhc-cCeEEEeC
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKH-ASVVAYVP 144 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~-ad~~l~~~ 144 (204)
+.=|.+ ..+-..+++.+.+.|+++..|++..-. .+-+. +|.++.=.
T Consensus 138 -------v~es~P--~~eG~~~a~~L~~~gi~v~~i~d~~~~-~~m~~~vd~VliGa 184 (282)
T PF01008_consen 138 -------VLESRP--YNEGRLMAKELAEAGIPVTLIPDSAVG-YVMPRDVDKVLIGA 184 (282)
T ss_dssp -------EE--TT--TTHHHTHHHHHHHTT-EEEEE-GGGHH-HHHHCTESEEEEE-
T ss_pred -------EccCCc--chhhhhHHHHhhhcceeEEEEechHHH-HHHHHhCCeeEEee
Confidence 111222 223367888899999999999988666 66777 89887543
No 172
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.93 E-value=17 Score=32.74 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.8
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 47 TQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 47 ~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
...++|.++|.|.|+..+-. .|...|..+...+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~---~L~~~G~~v~~~D 42 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLA---ALTRFGARPTVCD 42 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHH---HHHHCCCEEEEEc
Confidence 35689999999999987763 3556676666543
No 173
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=72.73 E-value=22 Score=34.10 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCC-cEEEEecchhHHHHHHHHHHHhh--cCCeEEEe-----c----C----C-C----C---CCCC
Q 028777 35 LDIMVAELTNTATQKG-SVFLYGVGREGLMLKALCMRLAH--LGISTHLV-----F----D----M-T----T---PPIS 90 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a~~~~~~l~~--lg~~~~~~-----~----d----~-~----~---~~~~ 90 (204)
-+++++.+++.+++.+ .|-+++.|....-..++..+|.+ +|.+-+.. . + . . . ..+.
T Consensus 296 WdEAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~~r~~~~~~~~~~~~~~~g~~~~~~~~Die 375 (797)
T PRK07860 296 WSEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFRARPHSAEEADFLAARVAGRGLGVTYADLE 375 (797)
T ss_pred HHHHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCCccccccccccchHHHHHHhhccCCCCCCCHHHHH
Confidence 4568888888888653 57777766544333344455543 44322110 0 0 0 0 0 0123
Q ss_pred CCcEEEEEe-CCCCCHHHH--HHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 91 SNDLLIASA-GPGGFSTVD--AICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 91 ~~DlvI~iS-~sG~t~~~~--~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
.-|+++++. ....+..+. .+.+.++++|+++|.|-..... ..++.||..+.+..
T Consensus 376 ~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~-t~a~~Ad~~l~irP 432 (797)
T PRK07860 376 KAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATR-GLEKMGGTLLRTAP 432 (797)
T ss_pred hCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCch-hhhhhhhceeccCC
Confidence 457777775 444443332 2334456789999998655443 46788998887643
No 174
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.27 E-value=23 Score=31.17 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCcEEEEecchhHHHHHHH
Q 028777 49 KGSVFLYGVGREGLMLKAL 67 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~ 67 (204)
-++|+++|.|.|+..|-.+
T Consensus 7 ~~~v~viG~G~sG~s~~~~ 25 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKH 25 (438)
T ss_pred CceEEEEeccHHHHHHHHH
Confidence 3689999999999877554
No 175
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=71.99 E-value=59 Score=28.88 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHH-----------------------HHHHHHhhcCCeEEEecC-----CC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLK-----------------------ALCMRLAHLGISTHLVFD-----MT 85 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~-----------------------~~~~~l~~lg~~~~~~~d-----~~ 85 (204)
...+.+++....+.+++..++++.|.+...+- .+...+.+.|+.+.++.+ ..
T Consensus 69 pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l 148 (437)
T PRK05613 69 PTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESW 148 (437)
T ss_pred hHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHH
Confidence 34455666665556666777777777554321 112234556777777652 12
Q ss_pred CCCCCCCcEEEEEeCCCC----CHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIASAGPGG----FSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~sG~----t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
...++++.-+|++...++ ..++-++.+.|+++|+.+|. ++. .. |+.--||+++...+
T Consensus 149 ~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~liv--D~t~a~g~~~~-p~~~GaDivv~S~~ 215 (437)
T PRK05613 149 QAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIV--DNTIATAALVR-PLELGADVVVASLT 215 (437)
T ss_pred HHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEE--ECCCccccccC-hHHhCCCEEEeecc
Confidence 234556654444544443 37888899999999987652 332 23 45445888877654
No 176
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=71.90 E-value=16 Score=29.17 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=42.4
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
+.+.|++|++-.|+.......+++.++.+|+++|.|--. .+ ++-+.+|+.+.-
T Consensus 162 ~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~-~~-~~~~~~~~~i~g 214 (224)
T cd01412 162 LAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPE-PT-PLSPIADFAFRG 214 (224)
T ss_pred HHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCC-CC-CCCCcCCEEEEC
Confidence 357899999999999998889999999999998888744 44 566667777654
No 177
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=71.75 E-value=37 Score=24.84 Aligned_cols=118 Identities=11% Similarity=0.034 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC---CC----CCCCCCCc---EEEEEeCCCCCH--H
Q 028777 39 VAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD---MT----TPPISSND---LLIASAGPGGFS--T 106 (204)
Q Consensus 39 l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d---~~----~~~~~~~D---lvI~iS~sG~t~--~ 106 (204)
.++++..+.+ +.-.++|.+....+|.-++..|....+...+.++ .. ...-.+.+ .++.+.-..... .
T Consensus 3 Ak~LA~~l~g-~~Pvi~g~~~~~~~A~R~k~ql~enAK~~A~~~~lPE~~hn~i~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (132)
T cd05637 3 AKELALELAG-RIPIIYGSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRIK 81 (132)
T ss_pred HHHHHHHhcC-CCCEEEeccchHHHHHHHHHHHHHHhCCCcccccCchhcccccccccCcccccceEEEecCcccccchh
Confidence 4566777665 5567888887788999999999876654444333 11 11111212 232232222221 1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHHHHHHHHHHHHHH
Q 028777 107 VDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLG 186 (204)
Q Consensus 107 ~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~l~ 186 (204)
....+..++++|+++..+....++ ++++++ ...++.|.....|+
T Consensus 82 ~r~~~~~~~~~~~~~~~~~~~g~s-~l~rl~-----------------------------------~Li~~~d~aSvyLA 125 (132)
T cd05637 82 LRIVITKFEEGGIPYEVIESVGAS-PLARLL-----------------------------------SLIYLGDLASVYLA 125 (132)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCC-HHHHHH-----------------------------------HHHHHHHHHHHHHH
Confidence 111223377788888888876666 554432 24567777778888
Q ss_pred HHhCCCh
Q 028777 187 EALGQSP 193 (204)
Q Consensus 187 ~~~g~~~ 193 (204)
...|.+|
T Consensus 126 ~~~GvDP 132 (132)
T cd05637 126 LLRGVDP 132 (132)
T ss_pred HHhCCCC
Confidence 8887765
No 178
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=71.59 E-value=39 Score=25.14 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCcEEEEecch-hHHHHHHHHHHHhhcCCeEEEecCC-----------C--CCCC-CCCcEEEEEeCCC
Q 028777 38 MVAELTNTATQKGSVFLYGVGR-EGLMLKALCMRLAHLGISTHLVFDM-----------T--TPPI-SSNDLLIASAGPG 102 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~-S~~~a~~~~~~l~~lg~~~~~~~d~-----------~--~~~~-~~~DlvI~iS~sG 102 (204)
.-+.+.+.+.++++|.++|.-. ..-.+......|..-|..++-+++. + ...+ .+=|+|-+|=.|
T Consensus 5 ~~~~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~- 83 (140)
T COG1832 5 EEEDIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRS- 83 (140)
T ss_pred cHHHHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecCh-
Confidence 3467888899999999999844 3334444444566778888887751 0 1122 355999998654
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEec
Q 028777 103 GFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 103 ~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
..+.+.++.+-+.|++++=.--
T Consensus 84 --e~~~~i~~eal~~~~kv~W~Ql 105 (140)
T COG1832 84 --EAAPEVAREALEKGAKVVWLQL 105 (140)
T ss_pred --hhhHHHHHHHHhhCCCeEEEec
Confidence 5566677888888888775543
No 179
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.40 E-value=12 Score=32.77 Aligned_cols=68 Identities=21% Similarity=0.128 Sum_probs=40.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCC--------C-----CC----CCCCcEEEEEeCCCCCHHHHHHH
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMT--------T-----PP----ISSNDLLIASAGPGGFSTVDAIC 111 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~--------~-----~~----~~~~DlvI~iS~sG~t~~~~~~~ 111 (204)
.++|.++|.|.++.. ++..|...|..+...++.. . .. ..+-|++|... |-. .....+
T Consensus 3 ~~~i~iiGlG~~G~s---lA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~--gi~-~~~~~l 76 (418)
T PRK00683 3 LQRVVVLGLGVTGKS---IARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSP--GIK-KEHPWV 76 (418)
T ss_pred CCeEEEEEECHHHHH---HHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECC--CCC-CCcHHH
Confidence 468999999998863 5666777887666544300 0 00 12235555543 433 335567
Q ss_pred HHHHHcCCeEE
Q 028777 112 SRARSYGARVL 122 (204)
Q Consensus 112 ~~ak~~g~~vI 122 (204)
+.|+++|++++
T Consensus 77 ~~A~~~g~~vv 87 (418)
T PRK00683 77 QAAIASHIPVV 87 (418)
T ss_pred HHHHHCCCcEE
Confidence 77788887743
No 180
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=71.11 E-value=56 Score=27.63 Aligned_cols=108 Identities=8% Similarity=0.063 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcE
Q 028777 15 QICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDL 94 (204)
Q Consensus 15 ~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~Dl 94 (204)
...+..+.+++.++.. .++..+..++.|..++.|...| .|..+.+.+.....+ |+ + .
T Consensus 90 ~~~~~~~~~i~~~~~a----~~~ia~~~a~~i~dg~~IlTh~--~S~~v~~~l~~A~~~-~k---------------~-~ 146 (301)
T COG1184 90 SLIKAAQEFIDRVEKA----KERIAEIGAERIHDGDVILTHS--FSKTVLEVLKTAADR-GK---------------R-F 146 (301)
T ss_pred HHHHhHHHHHHHHHHH----HHHHHHHHHhhccCCCEEEEec--CcHHHHHHHHHhhhc-CC---------------c-e
Confidence 3444444455444432 2224445567777888888777 555554444332221 11 1 2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 95 LIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 95 vI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
-+++.-|.=..+-..+++.+++.|+++..|++..-. ..-+.+|.+| ++.+.
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~-~~~~~vd~Vi-vGad~ 197 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVG-AFMSRVDKVL-VGADA 197 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHH-HHHHhCCEEE-ECccc
Confidence 222222222233667899999999999999999887 7788899887 44433
No 181
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=70.78 E-value=16 Score=32.37 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=19.3
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+|+++|.|.|++.+ ++..|...|..+...+
T Consensus 1 ~~~~iGiggsGm~~--la~~L~~~G~~v~~~D 30 (448)
T TIGR01082 1 KIHFVGIGGIGMSG--IAEILLNRGYQVSGSD 30 (448)
T ss_pred CEEEEEECHHHHHH--HHHHHHHCCCeEEEEC
Confidence 48999999988642 2333555676665543
No 182
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=70.78 E-value=32 Score=31.78 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecch-hHHHHH-HHHHHHhhcCC-eE-EEecC-----CCC------CCC-CCCcEE
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGR-EGLMLK-ALCMRLAHLGI-ST-HLVFD-----MTT------PPI-SSNDLL 95 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~-S~~~a~-~~~~~l~~lg~-~~-~~~~d-----~~~------~~~-~~~Dlv 95 (204)
....++.++.+.+.+.+.++|.+||--. -+..+. -+..-|.++|. .+ +++.+ +-. ... ..-+++
T Consensus 52 l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~Li 131 (575)
T PRK11070 52 LSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLI 131 (575)
T ss_pred hhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEE
Confidence 4567788888889999999999999743 232222 23445677887 34 34443 000 111 233677
Q ss_pred EEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 96 IASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 96 I~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
|..-..-.. .+.++.|+++|+.+ .||+....
T Consensus 132 ItvD~Gi~~---~e~i~~a~~~gidv-IVtDHH~~ 162 (575)
T PRK11070 132 VTVDNGISS---HAGVAHAHALGIPV-LVTDHHLP 162 (575)
T ss_pred EEEcCCcCC---HHHHHHHHHCCCCE-EEECCCCC
Confidence 777665444 45667789999986 56766543
No 183
>PRK05939 hypothetical protein; Provisional
Probab=70.68 E-value=68 Score=28.01 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHH----------------------HHHHHhhcCCeEEEec--C--CC
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKA----------------------LCMRLAHLGISTHLVF--D--MT 85 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~----------------------~~~~l~~lg~~~~~~~--d--~~ 85 (204)
.....+.+++....+..++...+++.|.+.+.+-. +...+...|..+..+. | ..
T Consensus 45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l 124 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDATDVQNV 124 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCCCHHHH
Confidence 34556677777777777777788888765433221 1112344566665543 1 12
Q ss_pred CCCCCCCcEEEEEeC----CCCCHHHHHHHHHHHHcCCeEEEEecCCC-Cc----chhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIASAG----PGGFSTVDAICSRARSYGARVLLLTAQPE-SG----SSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~----sG~t~~~~~~~~~ak~~g~~vI~iT~~~~-s~----~l~~~ad~~l~~~~ 145 (204)
...++++.-+|++.. .|...++-++++.|+++|+.+|. ++.. ++ |+.--+|+++...+
T Consensus 125 ~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~liv--D~t~a~~~~~~~~~~gaDivv~S~s 191 (397)
T PRK05939 125 AAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVV--DNTMTSPWLFRPKDVGASLVINSLS 191 (397)
T ss_pred HHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEE--ECCcccccccCccccCCEEEEecCe
Confidence 233455555555533 45567888899999999986553 4432 20 22223677665544
No 184
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=70.39 E-value=10 Score=30.98 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchh----hccCeEEEeCCcccc
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSV----KHASVVAYVPAQTMA 149 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~----~~ad~~l~~~~~~~~ 149 (204)
+-|++|++|-.+..+-.-.+-+..+..|+|+|.||+.+.- .-. +.-==.|.++++...
T Consensus 59 ~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~-k~kd~l~~~g~GYIivk~DpMI 120 (276)
T PF01993_consen 59 DPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTK-KAKDALEEEGFGYIIVKADPMI 120 (276)
T ss_dssp --SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGG-GGHHHHHHTT-EEEEETTS---
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCch-hhHHHHHhcCCcEEEEecCccc
Confidence 4589999999999999999999999999999999998654 321 111124556665543
No 185
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=70.20 E-value=11 Score=26.57 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=46.7
Q ss_pred EEEEecch-hHHHHHHHHHHHhhcCCeEEEecC---CCCCC--CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEe
Q 028777 52 VFLYGVGR-EGLMLKALCMRLAHLGISTHLVFD---MTTPP--ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 52 I~i~G~G~-S~~~a~~~~~~l~~lg~~~~~~~d---~~~~~--~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT 125 (204)
+.++|.|. |+.+++.+...+...|+++....- ..... ...-|+++.-.+-.+. .-++-+.+...|+|+..|.
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~--~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMY--FKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHH--HHHHHHHhhhcCCCEEEeC
Confidence 46778887 568888888888888887665321 11111 1234766654332221 2233344667899999988
Q ss_pred cCCCCcc
Q 028777 126 AQPESGS 132 (204)
Q Consensus 126 ~~~~s~~ 132 (204)
..... |
T Consensus 83 ~~~Y~-~ 88 (104)
T PRK09590 83 PQAYI-P 88 (104)
T ss_pred HHHcC-C
Confidence 77665 5
No 186
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=70.06 E-value=79 Score=28.01 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHH-----------------------HHHHHhhcCCeEEEec--C--CCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKA-----------------------LCMRLAHLGISTHLVF--D--MTT 86 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~-----------------------~~~~l~~lg~~~~~~~--d--~~~ 86 (204)
...+.+++....+..++...+++.|.+.+.+-. +...+.+.|..+.++. | ...
T Consensus 64 p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~ 143 (433)
T PRK08134 64 PTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWR 143 (433)
T ss_pred hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHH
Confidence 345566665556666666777777775532211 1122344676666654 2 222
Q ss_pred CCCCCCcEEEEEeCCCCC----HHHHHHHHHHHHcCCeEEEEecCCCCc-----chhhccCeEEEeCC
Q 028777 87 PPISSNDLLIASAGPGGF----STVDAICSRARSYGARVLLLTAQPESG-----SSVKHASVVAYVPA 145 (204)
Q Consensus 87 ~~~~~~DlvI~iS~sG~t----~~~~~~~~~ak~~g~~vI~iT~~~~s~-----~l~~~ad~~l~~~~ 145 (204)
..+++++-+|++...++. .++-++++.|+++|+.+|. ++.... |+.--||+++...+
T Consensus 144 ~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~liv--D~t~a~~~~~~pl~~GaD~vv~S~t 209 (433)
T PRK08134 144 AAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLV--DSTFTTPYLLRPFEHGADLVYHSAT 209 (433)
T ss_pred HhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEE--ECCCcccccCCchhcCCCEEEeccc
Confidence 345666666667766665 6788899999999987663 333210 44345888776644
No 187
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=69.99 E-value=34 Score=24.47 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=41.9
Q ss_pred EEEecchhHHHHHHHHHHHhh-cC-CeEEEecC-----CCCCCCCCCcEEEEEeCCCC-C---HHHHHHHHHHHHcCCeE
Q 028777 53 FLYGVGREGLMLKALCMRLAH-LG-ISTHLVFD-----MTTPPISSNDLLIASAGPGG-F---STVDAICSRARSYGARV 121 (204)
Q Consensus 53 ~i~G~G~S~~~a~~~~~~l~~-lg-~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~-t---~~~~~~~~~ak~~g~~v 121 (204)
.+++.-.+..+|+.++..|.. ++ ..+.-+.| .....+...|++|+-|.... + -+++-+++.+|+.|++-
T Consensus 2 ~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~ 81 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKR 81 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSE
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcE
Confidence 466666777888888887752 11 12222344 23346667899999988875 1 35566678889888754
Q ss_pred E-EEe
Q 028777 122 L-LLT 125 (204)
Q Consensus 122 I-~iT 125 (204)
| +|-
T Consensus 82 i~~Vi 86 (116)
T PF13793_consen 82 ITLVI 86 (116)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 4 443
No 188
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=69.92 E-value=18 Score=32.37 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=37.7
Q ss_pred CcEEEEecchhHHHH--H-----------------HHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEE-eCCCCCHHHHH
Q 028777 50 GSVFLYGVGREGLML--K-----------------ALCMRLAHLGISTHLVFDMTTPPISSNDLLIAS-AGPGGFSTVDA 109 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a--~-----------------~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~i-S~sG~t~~~~~ 109 (204)
++|++.|.|++++.+ + .+..+|...|..++.-.+ ..++.+.++||+- ..+..++|+.
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~--~~ni~~~~~VV~s~Ai~~~NpEi~- 84 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHD--AENILDADVVVVSNAIKEDNPEIV- 84 (459)
T ss_pred ceEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCC--HHHcCCCceEEEecccCCCCHHHH-
Confidence 479999999987644 2 122334444444433222 2345555554443 3456667765
Q ss_pred HHHHHHHcCCeEE
Q 028777 110 ICSRARSYGARVL 122 (204)
Q Consensus 110 ~~~~ak~~g~~vI 122 (204)
.|+++|+|++
T Consensus 85 ---~A~e~~ipi~ 94 (459)
T COG0773 85 ---AALERGIPVI 94 (459)
T ss_pred ---HHHHcCCCeE
Confidence 4677788765
No 189
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.87 E-value=36 Score=29.92 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=21.3
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+.++|.++|.|..+ ...+..|...|..+...+
T Consensus 4 ~~k~v~iiG~g~~G---~~~A~~l~~~G~~V~~~d 35 (450)
T PRK14106 4 KGKKVLVVGAGVSG---LALAKFLKKLGAKVILTD 35 (450)
T ss_pred CCCEEEEECCCHHH---HHHHHHHHHCCCEEEEEe
Confidence 45788888888744 346666667777666543
No 190
>PRK05568 flavodoxin; Provisional
Probab=69.68 E-value=39 Score=24.39 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=49.2
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEec--CCCCCCCCCCcEEEEEeCCCC-----CHHHHHHHHHHHH--cCCeEE
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVF--DMTTPPISSNDLLIASAGPGG-----FSTVDAICSRARS--YGARVL 122 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~--d~~~~~~~~~DlvI~iS~sG~-----t~~~~~~~~~ak~--~g~~vI 122 (204)
||.-+.|.+..+|+.+...+...|..+..+. +.....+.+-|.+++.|-.=. +..+...++..+. +|-++.
T Consensus 7 vY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~ 86 (142)
T PRK05568 7 IYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLV 86 (142)
T ss_pred EEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEE
Confidence 4555668899999999999988887766543 222234556677777775421 1345566655533 566777
Q ss_pred EEecC
Q 028777 123 LLTAQ 127 (204)
Q Consensus 123 ~iT~~ 127 (204)
.+++.
T Consensus 87 ~f~t~ 91 (142)
T PRK05568 87 LFGSY 91 (142)
T ss_pred EEEcc
Confidence 77764
No 191
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=69.34 E-value=33 Score=29.38 Aligned_cols=77 Identities=10% Similarity=0.197 Sum_probs=48.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHHh-hcCC-eEEEecC-----CCCCCCCCCcEEEEEeCCCC-CH---HHHHHHHHHHHc
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLA-HLGI-STHLVFD-----MTTPPISSNDLLIASAGPGG-FS---TVDAICSRARSY 117 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~-~lg~-~~~~~~d-----~~~~~~~~~DlvI~iS~sG~-t~---~~~~~~~~ak~~ 117 (204)
.+++.+++...+..+|+.++.+|. .+|. ...-+.| .....+..+|++|+-|.++. +. |++-++..+|+.
T Consensus 7 ~~~~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~ 86 (332)
T PRK00553 7 KSNHVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRG 86 (332)
T ss_pred CCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHc
Confidence 355667776777788888888775 2332 2233444 23345667899999998753 33 345556788999
Q ss_pred CCe-EEEEe
Q 028777 118 GAR-VLLLT 125 (204)
Q Consensus 118 g~~-vI~iT 125 (204)
|++ +.++.
T Consensus 87 ~a~~i~~Vi 95 (332)
T PRK00553 87 SAKSITAIL 95 (332)
T ss_pred CCCeEEEEe
Confidence 986 44554
No 192
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=69.11 E-value=35 Score=23.54 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=46.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCC--------------CCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDM--------------TTPPISSNDLLIASAGPGGFSTVDAICSR 113 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~--------------~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ 113 (204)
+.++|.++|.|.- |..-...|...|-++.++.+. +...+. +..+++..++....--.+.+.
T Consensus 6 ~~~~vlVvGgG~v---a~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~--~~~lV~~at~d~~~n~~i~~~ 80 (103)
T PF13241_consen 6 KGKRVLVVGGGPV---AARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLD--GADLVFAATDDPELNEAIYAD 80 (103)
T ss_dssp TT-EEEEEEESHH---HHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCT--TESEEEE-SS-HHHHHHHHHH
T ss_pred CCCEEEEECCCHH---HHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHh--hheEEEecCCCHHHHHHHHHH
Confidence 5789999998764 344556677778777776542 112232 344566666776666777788
Q ss_pred HHHcCCeEEEEecC
Q 028777 114 ARSYGARVLLLTAQ 127 (204)
Q Consensus 114 ak~~g~~vI~iT~~ 127 (204)
|+++|+++-.....
T Consensus 81 a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 81 ARARGILVNVVDDP 94 (103)
T ss_dssp HHHTTSEEEETT-C
T ss_pred HhhCCEEEEECCCc
Confidence 99999986655533
No 193
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=69.02 E-value=24 Score=25.45 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCcE-EEEecchhH-HHHHHHHHHHhhcCCeEEEecCCCCCCCCC-CcEEEEEeCCCCCHHHHHHHHHHH
Q 028777 39 VAELTNTATQKGSV-FLYGVGREG-LMLKALCMRLAHLGISTHLVFDMTTPPISS-NDLLIASAGPGGFSTVDAICSRAR 115 (204)
Q Consensus 39 l~~~~~~i~~a~~I-~i~G~G~S~-~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~-~DlvI~iS~sG~t~~~~~~~~~ak 115 (204)
+++++++|.+|+|. ++.|.|... -....+.....++|.++..... -...+.+ ....+...-...++...++++.
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~-- 77 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPM-GKGVIPEDHPLFLGYLGLFGSPAANEALEQ-- 77 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGG-GTTSSTTTSTTEEEESCGGSCHHHHHHHHH--
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCc-cccccCCCCchhcccCCccCCHHHHHHhcC--
Confidence 57899999988665 566666543 3555566666788999866442 1223332 3344442211135555555532
Q ss_pred HcCCeEEEEecC
Q 028777 116 SYGARVLLLTAQ 127 (204)
Q Consensus 116 ~~g~~vI~iT~~ 127 (204)
+.+|..-+.
T Consensus 78 ---aDlvl~iG~ 86 (137)
T PF00205_consen 78 ---ADLVLAIGT 86 (137)
T ss_dssp ---SSEEEEESS
T ss_pred ---CCEEEEECC
Confidence 455555543
No 194
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.98 E-value=21 Score=31.48 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=23.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
..++|.++|.|.++..+ +..|...|..+...+
T Consensus 4 ~~~~~~v~G~g~~G~~~---a~~l~~~g~~v~~~d 35 (445)
T PRK04308 4 QNKKILVAGLGGTGISM---IAYLRKNGAEVAAYD 35 (445)
T ss_pred CCCEEEEECCCHHHHHH---HHHHHHCCCEEEEEe
Confidence 35789999999888665 455677787766654
No 195
>PRK07050 cystathionine beta-lyase; Provisional
Probab=68.93 E-value=71 Score=27.81 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHH-----------------------HHHhhcCCeEEEecC----C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALC-----------------------MRLAHLGISTHLVFD----M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~-----------------------~~l~~lg~~~~~~~d----~ 84 (204)
+....+.+++....+.+++.+.++..|...+.+-... ..+...|..+..+.. .
T Consensus 63 ~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~ 142 (394)
T PRK07050 63 ATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAG 142 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHH
Confidence 4445567777777777778888877776553222111 122345666555431 1
Q ss_pred CCCCCCCCcEEEEEeCCC----CCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCC
Q 028777 85 TTPPISSNDLLIASAGPG----GFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPA 145 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS~sG----~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~ 145 (204)
....++++.-+|++...+ ...++-++++.|+++|+.+|. ++.. . |+..-+|+++...+
T Consensus 143 l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~liv--D~a~a~~~~~~-~l~~GaDi~v~S~t 210 (394)
T PRK07050 143 IADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAI--DNTYSAGLAFK-PFEHGVDISVQALT 210 (394)
T ss_pred HHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEE--ECCcccccccC-HHHcCCeEEEEECC
Confidence 123345555566665555 667788888999999986553 4432 2 44445787766544
No 196
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=68.84 E-value=7.7 Score=31.62 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=36.6
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
+-|++|++|-.+..+-...+-+..++.|+|+|.||+.+.-
T Consensus 60 ~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~ 99 (277)
T PRK00994 60 KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGK 99 (277)
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCcc
Confidence 5689999999999999999999999999999999998765
No 197
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=68.83 E-value=12 Score=30.41 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=41.5
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
+.+.|++|++-.|........+++.++.+|+++|.|--. .+ ++-..+|+.+.-
T Consensus 175 ~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~-~~-~~~~~~~~~i~~ 227 (242)
T PRK00481 175 LEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLE-PT-PLDSLFDLVIHG 227 (242)
T ss_pred HhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCC-CC-CCCCccCEEEEC
Confidence 346699999999998888888888899999998888754 44 566667766644
No 198
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.62 E-value=19 Score=32.24 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=19.9
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEe
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLV 81 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~ 81 (204)
..++|.++|.|.|+..+ +..|...|..+...
T Consensus 14 ~~~~v~v~G~G~sG~a~---a~~L~~~G~~V~~~ 44 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGI---AAMLSELGCDVVVA 44 (473)
T ss_pred cCCeEEEEccCHHHHHH---HHHHHHCCCEEEEE
Confidence 45789999999998632 22344555544443
No 199
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=68.48 E-value=18 Score=27.43 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 123 (204)
+-|.+|+++ ..+..|+.+-++...++|.+.|.
T Consensus 126 ~pd~vivla-w~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 126 KPDYVIVLA-WNYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp --SEEEES--GGGHHHHHHHTHHHHHTT-EEEE
T ss_pred CCCEEEEcC-hhhHHHHHHHHHHHHhcCCEEEE
Confidence 347776655 68899999999998899988774
No 200
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=68.38 E-value=80 Score=27.41 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEec--C--CCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVF--D--MTT 86 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~--d--~~~ 86 (204)
...+.+++....+.+++.+.+++.|.+.+.+-.. ...+...|..+..+. | ...
T Consensus 61 p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~ 140 (390)
T PRK08133 61 PTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWR 140 (390)
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHH
Confidence 4455677766667778888888888765432211 112234566555542 1 112
Q ss_pred CCCCCCcEEEEE----eCCCCCHHHHHHHHHHHHcCCeEEEE----ecCCCCcchhhccCeEEEeCC
Q 028777 87 PPISSNDLLIAS----AGPGGFSTVDAICSRARSYGARVLLL----TAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 87 ~~~~~~DlvI~i----S~sG~t~~~~~~~~~ak~~g~~vI~i----T~~~~s~~l~~~ad~~l~~~~ 145 (204)
..++++.-+|++ ...|...++-++++.|+++|+.+|.= +..... |+..-+|+++...+
T Consensus 141 ~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~-pl~~g~Divv~S~s 206 (390)
T PRK08133 141 AAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQ-PLKLGADVVIHSAT 206 (390)
T ss_pred HhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCC-chhhCCcEEEeecc
Confidence 234455545553 23567777888889999999866531 111223 55555787766544
No 201
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=68.35 E-value=4.7 Score=29.66 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=28.7
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
..+-|++|+...+...++.++.++.....+.+++.+-+.
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 356799999999999999888877766666666666544
No 202
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=67.97 E-value=75 Score=27.35 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC---------------------------C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD---------------------------M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d---------------------------~ 84 (204)
.....+.+++....+..++.+.++..|.+.+.+-. .+..-|-.+..... .
T Consensus 52 ~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l---~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~ 128 (364)
T PRK07269 52 KNPTRAKLEETLAAIESADYALATSSGMSAIVLAF---SVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANTEEE 128 (364)
T ss_pred CCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHH---HHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEecCCHHH
Confidence 34456677777777778888888877776644321 12233333333211 0
Q ss_pred CCCCCCCCcEEEEEeC----CCCCHHHHHHHHHHHHcCCeEEE----EecCCCCcchhhccCeEEEeCC
Q 028777 85 TTPPISSNDLLIASAG----PGGFSTVDAICSRARSYGARVLL----LTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS~----sG~t~~~~~~~~~ak~~g~~vI~----iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
....+++++-+|++.. .|...++-++++.|+++|+.+|. .+..... |+...+|+++...+
T Consensus 129 l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~-pl~~gaDivv~S~t 196 (364)
T PRK07269 129 LIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQR-PIELGADIVLHSAT 196 (364)
T ss_pred HHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC-chhhCCcEEEecCc
Confidence 1123445544555333 34456788888999999987763 2333345 77777998887754
No 203
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=67.96 E-value=10 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=24.7
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+.+-|++|=|| ....+.+.++.+.++|.++|.=|..
T Consensus 65 ~~~~DVvIDfT---~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 65 LEEADVVIDFT---NPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp TTH-SEEEEES----HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred cccCCEEEEcC---ChHHhHHHHHHHHhCCCCEEEECCC
Confidence 34578999999 4466778889999999998875533
No 204
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=67.96 E-value=14 Score=29.17 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=41.2
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchh--hccCeEE
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSV--KHASVVA 141 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~--~~ad~~l 141 (204)
+.+.|++|++-.|.....+..+++.++++|++++.|--.+.. .. ..+|+.+
T Consensus 167 ~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~--~~~~~~~~~~~ 219 (222)
T cd00296 167 LLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTP--ADALKKADLVI 219 (222)
T ss_pred HhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCC--CCCCCcceEEE
Confidence 345799999999999999999999999999999988766544 44 4566544
No 205
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=67.92 E-value=58 Score=27.84 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=51.2
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHh--hcC-CeEEEecCC-------CCCCCCCCcEEEEEeCCCCCHHHHHH---HHHH
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLA--HLG-ISTHLVFDM-------TTPPISSNDLLIASAGPGGFSTVDAI---CSRA 114 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~--~lg-~~~~~~~d~-------~~~~~~~~DlvI~iS~sG~t~~~~~~---~~~a 114 (204)
+.+.+.+++...+..+|+.++..+. .++ .....+.|- ....+...|++|+-|.+.. ..++++ +..+
T Consensus 13 ~~~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAl 91 (326)
T PLN02297 13 NKKQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYAL 91 (326)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHH
Confidence 4567888888888889998888762 232 233344441 1245667899999997654 555554 4778
Q ss_pred HHcCCe-EEEEec
Q 028777 115 RSYGAR-VLLLTA 126 (204)
Q Consensus 115 k~~g~~-vI~iT~ 126 (204)
|+.|++ +.++..
T Consensus 92 r~~ga~~i~~ViP 104 (326)
T PLN02297 92 PKLFVASFTLVLP 104 (326)
T ss_pred HHcCCCEEEEEee
Confidence 889995 556653
No 206
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=67.71 E-value=6.6 Score=24.77 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCC
Q 028777 105 STVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 105 ~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
..+.++++.|+++|...++||+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC
Confidence 457789999999999999999875
No 207
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=67.62 E-value=22 Score=26.70 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=34.8
Q ss_pred HHHHHHHHH--hcCCcEEEEec-chhHHHHHHHHHHHhhcCCeEEEecC
Q 028777 38 MVAELTNTA--TQKGSVFLYGV-GREGLMLKALCMRLAHLGISTHLVFD 83 (204)
Q Consensus 38 ~l~~~~~~i--~~a~~I~i~G~-G~S~~~a~~~~~~l~~lg~~~~~~~d 83 (204)
.++.+-+.+ +++++|.++|+ |.-.+-|+.|.|-.+..+...+++.+
T Consensus 6 ~L~~Fk~~v~~~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~ 54 (147)
T PF09897_consen 6 MLREFKELVGLKDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPD 54 (147)
T ss_dssp HHHHHHHHT--TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEET
T ss_pred HHHHHHHHHcccCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCC
Confidence 455555666 89999999999 77899999999999998888888765
No 208
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=67.05 E-value=58 Score=28.23 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC----CCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD----MTT 86 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d----~~~ 86 (204)
...+.+++....+..+..+.++..|.+.+.+-.. ...+...|+.+..+.. ...
T Consensus 50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~ 129 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIA 129 (377)
T ss_pred ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence 3345666666666777788888777655433211 1122345555554421 112
Q ss_pred CCCCCCcEEEE----EeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----chhhccCeEEEeCC
Q 028777 87 PPISSNDLLIA----SAGPGGFSTVDAICSRARSYGARVLLLTAQPESG-----SSVKHASVVAYVPA 145 (204)
Q Consensus 87 ~~~~~~DlvI~----iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~-----~l~~~ad~~l~~~~ 145 (204)
..++++.-+|+ .+..|...++-++++.|+++|+.+| .++..+. |+.--+|+++...+
T Consensus 130 ~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~li--vD~t~a~g~~~~pl~~gaDivv~S~t 195 (377)
T TIGR01324 130 TLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIM--IDNTWAAGLLFKPLEHGVDISIQAGT 195 (377)
T ss_pred HhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEE--EECCCccccccCccccCceEEEecCc
Confidence 23445444444 3455677778888999999998655 4444221 45555787665443
No 209
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=66.67 E-value=33 Score=25.96 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=37.5
Q ss_pred ecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEe--C-CCCCHH-HHHHHHHHH---HcCCeEEEEe
Q 028777 56 GVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASA--G-PGGFST-VDAICSRAR---SYGARVLLLT 125 (204)
Q Consensus 56 G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS--~-sG~t~~-~~~~~~~ak---~~g~~vI~iT 125 (204)
..|.+..+|+.++..|......+.-+.+.....+.+-|++|+.| . .|..+. ..+.++... -.|-++..++
T Consensus 9 ~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~l~gk~v~~fg 85 (167)
T TIGR01752 9 DTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKTVALFG 85 (167)
T ss_pred CCChHHHHHHHHHHHhCCCceEEEEcccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 44778899999988886432333333332222345567777777 2 354543 333444432 2455555554
No 210
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=66.56 E-value=47 Score=27.78 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=30.1
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPE 129 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~ 129 (204)
.+-|++|+...+..+.++++.++..-..+..++.+.+.-+
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 4569999999999998888877776556666777665433
No 211
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=66.39 E-value=90 Score=27.62 Aligned_cols=116 Identities=12% Similarity=0.148 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHH-----------------------HHHHHHhhcCCeEEEecC----CC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLK-----------------------ALCMRLAHLGISTHLVFD----MT 85 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~-----------------------~~~~~l~~lg~~~~~~~d----~~ 85 (204)
......++.....+..+...++|..|.+..-+- .+..-+.++|+.+..++- -.
T Consensus 76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~ 155 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKI 155 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHH
Confidence 345667888888888888888888777443221 111122234444444331 12
Q ss_pred CCCCCC-CcEEEEEeCCC---CCHHHHHHHHHHHHcCCeEEE---EecCCCCcchhhccCeEEEeCCccc
Q 028777 86 TPPISS-NDLLIASAGPG---GFSTVDAICSRARSYGARVLL---LTAQPESGSSVKHASVVAYVPAQTM 148 (204)
Q Consensus 86 ~~~~~~-~DlvI~iS~sG---~t~~~~~~~~~ak~~g~~vI~---iT~~~~s~~l~~~ad~~l~~~~~~~ 148 (204)
...+.+ .++|++=|-+- ...++.++.+.|+++|+.+|. +-+..+..||.=-||++....+.-.
T Consensus 156 ~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi 225 (409)
T KOG0053|consen 156 LKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYI 225 (409)
T ss_pred HHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeee
Confidence 233455 45555555443 556788888999999997663 2222222133333999998866443
No 212
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=66.15 E-value=54 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=21.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+.++|.++|.|. +|..-...|..-|..+.+++
T Consensus 12 ~~~~vlVvGGG~---va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGK---IAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEc
Confidence 578899999887 33444455555677776664
No 213
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=66.04 E-value=35 Score=32.70 Aligned_cols=54 Identities=9% Similarity=-0.024 Sum_probs=36.3
Q ss_pred CCCcEEEEEeCCC-CCH--HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 90 SSNDLLIASAGPG-GFS--TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS~sG-~t~--~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
..-|++|++.... .+. -....+..+|++|+++|.|- ...+ +.+..||..|.+..
T Consensus 172 ~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVD-Pr~t-~ta~~AD~wlpirP 228 (760)
T cd02760 172 PLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVE-PHLS-VTGACSAEWVPIRP 228 (760)
T ss_pred hcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEc-CCCC-cchhhcCeEeCcCC
Confidence 3456777774433 221 13455677889999999995 4456 78899999887743
No 214
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=66.03 E-value=48 Score=29.60 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=50.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHh-hcC-CeEEEecC-----CCCCCCCCCcEEEEEeCCCC-C---HHHHHHHHHHHH
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLA-HLG-ISTHLVFD-----MTTPPISSNDLLIASAGPGG-F---STVDAICSRARS 116 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~-~lg-~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~-t---~~~~~~~~~ak~ 116 (204)
+.+...+++...+..+|+.++..|. .+| ..+.-+.| .....+...|++|+-|.+.- + -|++-++..+|+
T Consensus 116 ~~~~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~ 195 (439)
T PTZ00145 116 KMENAILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRR 195 (439)
T ss_pred ccCCeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHH
Confidence 4567778876667788988888875 222 22333444 23345667899999886654 3 345556678999
Q ss_pred cCCeEE-EEe
Q 028777 117 YGARVL-LLT 125 (204)
Q Consensus 117 ~g~~vI-~iT 125 (204)
.|++-| ++-
T Consensus 196 agAkrItlVi 205 (439)
T PTZ00145 196 ASAKKITAVI 205 (439)
T ss_pred hccCeEEEEe
Confidence 999544 444
No 215
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=65.91 E-value=59 Score=28.43 Aligned_cols=111 Identities=18% Similarity=0.130 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC----C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD----M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d----~ 84 (204)
+....+.+++....+.+++...+++.|.+.+.+-.. ...+...|..+..+.. .
T Consensus 68 ~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 147 (403)
T PRK07810 68 GNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQ 147 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 455667888888888888999999999977543211 1123345666655532 1
Q ss_pred CCCCCCCCcEEEEE----eCCCCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 85 TTPPISSNDLLIAS----AGPGGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 85 ~~~~~~~~DlvI~i----S~sG~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
....++++.-+|++ ...|...++-++.+.|+++|+.+|. ++. .. |+.--+|+++...+
T Consensus 148 l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~viv--D~a~a~~~~~~-~~~~gaDivv~S~t 215 (403)
T PRK07810 148 WEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVL--DNVFATPLLQR-GLPLGADVVVYSGT 215 (403)
T ss_pred HHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE--ECCCCccccCC-hhhcCCcEEEccCC
Confidence 12233444434442 3456666788889999999986652 222 22 44445788776544
No 216
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=65.85 E-value=61 Score=25.16 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHhc---CCcEEEEec-chhHHHHHHHHHHHh-hcCCeEEEecC---------------CCCCCCCCC
Q 028777 33 PPLDIMVAELTNTATQ---KGSVFLYGV-GREGLMLKALCMRLA-HLGISTHLVFD---------------MTTPPISSN 92 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~---a~~I~i~G~-G~S~~~a~~~~~~l~-~lg~~~~~~~d---------------~~~~~~~~~ 92 (204)
+++++.++++++.|.+ .+...++|. .+|-+-+-++...+. .+.+....++. -....+...
T Consensus 15 e~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~gr 94 (178)
T COG0634 15 EQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGR 94 (178)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCC
Confidence 3667777888877763 467788887 556665555555554 22222333322 123456678
Q ss_pred cEEEEE--eCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCe
Q 028777 93 DLLIAS--AGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASV 139 (204)
Q Consensus 93 DlvI~i--S~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~ 139 (204)
|++|+= =-||.| +-.+.+.++.+|++-+.+..--+- |..+.+|+
T Consensus 95 dVLiVeDIiDsG~T--Ls~i~~~l~~r~a~sv~i~tLldK-~~~r~~~i 140 (178)
T COG0634 95 DVLIVEDIIDSGLT--LSKVRDLLKERGAKSVRIATLLDK-PERRKVDI 140 (178)
T ss_pred eEEEEecccccChh--HHHHHHHHHhCCCCeEEEEEEeeC-cccccCCC
Confidence 899884 456666 666778888988877766666555 66666554
No 217
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=65.14 E-value=77 Score=27.05 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh--------------------hcCCeEEEec-C---C-----
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA--------------------HLGISTHLVF-D---M----- 84 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~--------------------~lg~~~~~~~-d---~----- 84 (204)
...+.+++........+.+..+..|.+.+.+-..+..+. ..|....+++ | .
T Consensus 25 ~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~ 104 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPE 104 (363)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HH
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHH
Confidence 344556665556667999999999988765544333222 2344444332 1 0
Q ss_pred -CCCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC------CCCcchhhccCeEEEeCCcccc
Q 028777 85 -TTPPISSN-DLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ------PESGSSVKHASVVAYVPAQTMA 149 (204)
Q Consensus 85 -~~~~~~~~-DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~------~~s~~l~~~ad~~l~~~~~~~~ 149 (204)
....++++ ..+++...-|...++-++.+.|+++|+++|==... .+- ++....|+.+..-..++.
T Consensus 105 ~~~~~i~~~t~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~-~~G~~gd~~~fSf~~~K~ 176 (363)
T PF01041_consen 105 ALEKAITPKTKAILVVHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGR-PVGSFGDIAIFSFHPTKI 176 (363)
T ss_dssp HHHHHHHTTEEEEEEE-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTE-ETTSSSSEEEEESSTTSS
T ss_pred HHHHHhccCccEEEEecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCE-eccCCCCceEecCCCCCC
Confidence 01123333 68888888899999999999999999977632111 111 445677887776443333
No 218
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=65.11 E-value=31 Score=26.62 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=50.1
Q ss_pred HHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccC---eEEEeCC
Q 028777 70 RLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHAS---VVAYVPA 145 (204)
Q Consensus 70 ~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad---~~l~~~~ 145 (204)
.|...|+.+..++ =+-.+|..-.+--|+++.+.+..+|+.|++++.++++..+ .++..+. +.+...+
T Consensus 22 ~L~~~Gikgvi~D--------lDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~-RV~~~~~~l~v~fi~~A 91 (175)
T COG2179 22 ILKAHGIKGVILD--------LDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKES-RVARAAEKLGVPFIYRA 91 (175)
T ss_pred HHHHcCCcEEEEe--------ccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHH-HHHhhhhhcCCceeecc
Confidence 4566777777754 2345667777788999999999999999999999998887 6765443 5555544
No 219
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.85 E-value=51 Score=28.92 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=22.3
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEe
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLV 81 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~ 81 (204)
+.++|+++|.|.++..+ +..|...|..+...
T Consensus 4 ~~k~v~v~G~g~~G~s~---a~~l~~~G~~V~~~ 34 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAA---AKLLHKLGANVTVN 34 (447)
T ss_pred CCCEEEEEeeCHHHHHH---HHHHHHCCCEEEEE
Confidence 35789999999866554 55677777776664
No 220
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=64.73 E-value=42 Score=22.86 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEec-chhHHHHHHHHHHHhhcCCeEEEecC------------C-CCCCCCCCcEEEEEeCC
Q 028777 36 DIMVAELTNTATQKGSVFLYGV-GREGLMLKALCMRLAHLGISTHLVFD------------M-TTPPISSNDLLIASAGP 101 (204)
Q Consensus 36 ~~~l~~~~~~i~~a~~I~i~G~-G~S~~~a~~~~~~l~~lg~~~~~~~d------------~-~~~~~~~~DlvI~iS~s 101 (204)
++.++++-+.+.+++.|+++.. |-+..-...+...|...|....+... . .....-.|.+.+++| .
T Consensus 7 ~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~~~~~l~~~l~G~~~~if~-~ 85 (100)
T PF00466_consen 7 EEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTGFEEALSPLLKGPTALIFS-N 85 (100)
T ss_dssp HHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHHTSSSSSCCTSSSEEEEEE-S
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCccccCccccccCCEEEEEE-C
Confidence 3478889999999999999988 44777888888999888777776532 1 234455788899999 4
Q ss_pred CCCHHHHHHHH
Q 028777 102 GGFSTVDAICS 112 (204)
Q Consensus 102 G~t~~~~~~~~ 112 (204)
.+..++.+++.
T Consensus 86 ~d~~~~~k~l~ 96 (100)
T PF00466_consen 86 EDPFEIAKILK 96 (100)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555443
No 221
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=64.14 E-value=61 Score=24.58 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=53.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCC
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
.+-++++|.|..+--+-.+++.|..-|+++.++ ++--..-.+++.....+.+++.|.+++......
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~--------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 91 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVY--------------LVGPPEKLSEDAKQQLEILKKMGIKIIELDSDE 91 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEE--------------EEESSSSTSHHHHHHHHHHHHTT-EEESSCCGS
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEE--------------EEeccccCCHHHHHHHHHHHhcCCcEeeccccc
Confidence 455688999999999999999999999887762 122223556778888899999998877655432
Q ss_pred CCcchhhccCeEEEeCC
Q 028777 129 ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 129 ~s~~l~~~ad~~l~~~~ 145 (204)
...+..+.+|+++..-.
T Consensus 92 ~~~~~~~~~dlIIDal~ 108 (169)
T PF03853_consen 92 DLSEALEPADLIIDALF 108 (169)
T ss_dssp GGGHHGSCESEEEEES-
T ss_pred hhhcccccccEEEEecc
Confidence 21011234777776643
No 222
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=64.08 E-value=48 Score=28.45 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCC--cEEEEecchhHHHHHHHHHHHh-hcCCeEEEec-C-----------C----CCCCCCCCcE
Q 028777 34 PLDIMVAELTNTATQKG--SVFLYGVGREGLMLKALCMRLA-HLGISTHLVF-D-----------M----TTPPISSNDL 94 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~--~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~~-d-----------~----~~~~~~~~Dl 94 (204)
.-++.++.+++.+++.+ .|.+++.+....-..++..+|. .+|.+-.... . . ....+..-|+
T Consensus 69 sWdeAl~~ia~~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~ 148 (375)
T cd02773 69 TWEEALAAIAKALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTTIAGIEEADA 148 (375)
T ss_pred CHHHHHHHHHHHHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccccccccccCCCHHHHhhCCE
Confidence 34678889999988654 7888766543333333334443 3453221111 0 0 0112345678
Q ss_pred EEEEeCCC-CCHHH-HHHHH-HHHHcCCeEEEEec
Q 028777 95 LIASAGPG-GFSTV-DAICS-RARSYGARVLLLTA 126 (204)
Q Consensus 95 vI~iS~sG-~t~~~-~~~~~-~ak~~g~~vI~iT~ 126 (204)
++++.... .+..+ ...++ ..+++|++++.|=.
T Consensus 149 il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp 183 (375)
T cd02773 149 VLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGP 183 (375)
T ss_pred EEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcC
Confidence 88777644 33222 22233 34556999998843
No 223
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=64.07 E-value=7.2 Score=27.71 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=35.0
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCc-chhhccCeEEEeCC
Q 028777 98 SAGPGGFSTVDAICSRARSYGARVLLLTAQPESG-SSVKHASVVAYVPA 145 (204)
Q Consensus 98 iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~-~l~~~ad~~l~~~~ 145 (204)
+-.+|.. .+++++.+|+.|.++|+|-+++++. +-.+.||..+..+.
T Consensus 7 IanrGei--a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~ 53 (110)
T PF00289_consen 7 IANRGEI--AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPP 53 (110)
T ss_dssp ESS-HHH--HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEES
T ss_pred EECCCHH--HHHHHHHHHHhCCcceeccCchhcccccccccccceecCc
Confidence 3344443 7889999999999999999998751 34577999988873
No 224
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=63.95 E-value=16 Score=29.56 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=41.5
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchh--hccCeEEEeCC
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSV--KHASVVAYVPA 145 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~--~~ad~~l~~~~ 145 (204)
+.+-|++|++-.|+.....-.+.+.++ +|+++|.|--.+ + +.. +.+|+.|.-++
T Consensus 173 ~~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~~-~-~~~~~~~~d~~~~~~~ 228 (235)
T cd01408 173 KEEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINREP-V-GHLGKRPFDVALLGDC 228 (235)
T ss_pred HhcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCCC-C-CCCCCCCcCEEEeCCH
Confidence 456799999999999888888888877 689988776554 4 455 67888776544
No 225
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.91 E-value=57 Score=27.77 Aligned_cols=78 Identities=8% Similarity=0.178 Sum_probs=49.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHh-hcC-CeEEEecC-----CCCCCCCCCcEEEEEeCCCC-CH---HHHHHHHHHHH
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLA-HLG-ISTHLVFD-----MTTPPISSNDLLIASAGPGG-FS---TVDAICSRARS 116 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~-~lg-~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~-t~---~~~~~~~~ak~ 116 (204)
..+++.+++...+..+|+.++..|. .++ .....+.| .....+..+|++|+-|.+.. +. |++-++..+|+
T Consensus 3 ~~~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~ 82 (319)
T PRK04923 3 DQRNLLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKR 82 (319)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHH
Confidence 3466778887778889999988875 222 22333444 22344566889898876543 33 44555678889
Q ss_pred cCCe-EEEEe
Q 028777 117 YGAR-VLLLT 125 (204)
Q Consensus 117 ~g~~-vI~iT 125 (204)
.|++ +.++.
T Consensus 83 ~~a~~i~~Vi 92 (319)
T PRK04923 83 ASAASVTAVI 92 (319)
T ss_pred cCCcEEEEEe
Confidence 9986 44554
No 226
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=63.79 E-value=83 Score=27.84 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC----C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD----M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d----~ 84 (204)
.....+.+++....+..++...+++.|.+.+.+-.+ ...+...|..+..+.- .
T Consensus 62 ~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~ 141 (431)
T PRK08248 62 MNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPEN 141 (431)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHH
Confidence 345566777777777778888888888866443211 1123346666666541 1
Q ss_pred CCCCCCCC-cEEEEEeCC---CCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 85 TTPPISSN-DLLIASAGP---GGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 85 ~~~~~~~~-DlvI~iS~s---G~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
....++++ .++++-+.+ |...++-++++.|+++|+.+| .++. .. |+.--+|+++...+
T Consensus 142 l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vI--vD~t~a~~~~~~-pl~~gaDivv~S~t 209 (431)
T PRK08248 142 FEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLI--VDNTFASPYLLR-PIEHGADIVVHSAT 209 (431)
T ss_pred HHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEE--EeCCCCccccCC-hhHcCCCEEEEcCc
Confidence 11233444 455444333 666778888899999998665 2332 22 44445888776544
No 227
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=63.51 E-value=14 Score=29.67 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=38.4
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
+.+.|++|++-.|........+++.++ +|+++|.|--. .+ ++...+|+.+.-
T Consensus 169 ~~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN~~-~~-~~~~~~~~~~~~ 220 (225)
T cd01411 169 IEKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAINKE-PT-QLDSPATLVIKD 220 (225)
T ss_pred HhcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEECCC-CC-CCCcchhehhcc
Confidence 456789999888888877777777765 79998888754 44 577777776643
No 228
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=62.71 E-value=9.6 Score=29.41 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.9
Q ss_pred CCCCHHHHHH-HHHHHHcCCeEEEEecCCCCcchh
Q 028777 101 PGGFSTVDAI-CSRARSYGARVLLLTAQPESGSSV 134 (204)
Q Consensus 101 sG~t~~~~~~-~~~ak~~g~~vI~iT~~~~s~~l~ 134 (204)
-|+.++++++ +++|++.|++-|.||+.+++ +-+
T Consensus 112 KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN-~AS 145 (174)
T COG3981 112 KGYAKEMLKLALEKARELGIKKVLVTCDKDN-IAS 145 (174)
T ss_pred cCHHHHHHHHHHHHHHHcCCCeEEEEeCCCC-chh
Confidence 4677777765 48899999999999999998 443
No 229
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=62.67 E-value=44 Score=29.44 Aligned_cols=93 Identities=8% Similarity=-0.009 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHH---HHh-----hcCCeEEEecC--------------------CC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCM---RLA-----HLGISTHLVFD--------------------MT 85 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~---~l~-----~lg~~~~~~~d--------------------~~ 85 (204)
.+.+.++++.+. .+.+-|+++++..+..++.++.. ++. ..|+++..++. ..
T Consensus 68 ~L~~~i~~~~~~-~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~ 146 (428)
T cd01965 68 NLIEALKNLLSR-YKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQL 146 (428)
T ss_pred HHHHHHHHHHHh-cCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 344444444444 24677999999999988887664 443 26888887642 01
Q ss_pred CC-C--CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 86 TP-P--ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 86 ~~-~--~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.. . -.++.+.|+........++.++.+.+++.|.+++.+-+.
T Consensus 147 ~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~ 191 (428)
T cd01965 147 AKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDL 191 (428)
T ss_pred hcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCc
Confidence 11 1 345667776555443445777778888999999987643
No 230
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=62.30 E-value=21 Score=27.82 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=43.2
Q ss_pred EecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHH------HHHHHHHcCCeEEEEecCC
Q 028777 55 YGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDA------ICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 55 ~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~------~~~~ak~~g~~vI~iT~~~ 128 (204)
||.|....+++ .|.++|..+..+.+. ..+.+-|.+| +.-+|.+.+..+ +.+.+++.|.|+++|+--.
T Consensus 8 ~g~gn~~s~~~----~l~~~g~~~~~v~~~--~~~~~~d~iI-lPG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 8 TGCANLSSVKF----AIERLGYEPVVSRDP--DVILAADKLF-LPGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCchHHHHHH----HHHHCCCeEEEECCH--HHhCCCCEEE-ECCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 45566555554 566788888887752 1223346554 466677766643 3566778899999998554
Q ss_pred C
Q 028777 129 E 129 (204)
Q Consensus 129 ~ 129 (204)
.
T Consensus 81 Q 81 (196)
T PRK13170 81 Q 81 (196)
T ss_pred H
Confidence 3
No 231
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=62.24 E-value=19 Score=27.17 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=29.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 93 DLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 93 DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.++|+++-...+.++.+.++.+|+.|+.+++|.-.
T Consensus 108 kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 108 QFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 57888887766677889999999999999988765
No 232
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=62.09 E-value=10 Score=25.15 Aligned_cols=45 Identities=9% Similarity=0.060 Sum_probs=31.2
Q ss_pred EEEEEeCCCCC---HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCe
Q 028777 94 LLIASAGPGGF---STVDAICSRARSYGARVLLLTAQPESGSSVKHASV 139 (204)
Q Consensus 94 lvI~iS~sG~t---~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~ 139 (204)
.|.++...|+. -..-++++.|++.|...|.|..+.+. |+.++.|+
T Consensus 14 ~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~P-PVcKi~dy 61 (76)
T PF05198_consen 14 EVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVSPNADP-PVCKIMDY 61 (76)
T ss_dssp EEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS--EEEEE-H
T ss_pred EEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEcCCCCC-CeEEEech
Confidence 34445555554 35678899999999999999988888 99888775
No 233
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=62.07 E-value=89 Score=27.11 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH----------------------HHHHhhcCCeEEEec-C--CCCC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL----------------------CMRLAHLGISTHLVF-D--MTTP 87 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~----------------------~~~l~~lg~~~~~~~-d--~~~~ 87 (204)
....+.+++....+..++.+.+++.|.+.+.+-.. ...+...|..+.... + ....
T Consensus 52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~ 131 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIE 131 (385)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECCCHHHHHH
Confidence 34456777777777777888888887765432211 011123354444322 1 1112
Q ss_pred CCCC-CcEEEEEeCCC----CCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCC
Q 028777 88 PISS-NDLLIASAGPG----GFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~-~DlvI~iS~sG----~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~ 145 (204)
.+++ +.-+|++...+ ...++-++++.|+++|+.+| .++.. . |+..-+|+++...+
T Consensus 132 ~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~li--vD~t~a~~~~~~-~l~~GaDivv~S~s 197 (385)
T PRK08574 132 AIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILV--VDNTFATPLLYR-PLRHGADFVVHSLT 197 (385)
T ss_pred hcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEE--EECCCCccccCC-hhhhCCcEEEeeCc
Confidence 2333 33344454333 35677788899999998665 34432 3 44444787776644
No 234
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.03 E-value=36 Score=30.04 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=24.7
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 47 TQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 47 ~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
...+.|.++|.|.|+.. ++..|...|..+...+
T Consensus 4 ~~~~~~~v~G~G~sG~s---~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLS---VVRFLARQGIPFAVMD 36 (448)
T ss_pred ccCCeEEEEeecHhHHH---HHHHHHhCCCeEEEEe
Confidence 34578999999999874 6666778887776644
No 235
>PRK05967 cystathionine beta-lyase; Provisional
Probab=61.91 E-value=1.1e+02 Score=26.80 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHH-----------------H------HHHHHhhcCCeEEEecC----CC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLK-----------------A------LCMRLAHLGISTHLVFD----MT 85 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~-----------------~------~~~~l~~lg~~~~~~~d----~~ 85 (204)
+...+.+++....+..+..-.+++.|.+.+.+- | +...+.+.|+.+..+.. ..
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l 142 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGI 142 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHH
Confidence 344455666655556555555555565442221 1 11234567887777642 12
Q ss_pred CCCCCCCcEEEEEeCC----CCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCCcc
Q 028777 86 TPPISSNDLLIASAGP----GGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~s----G~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~~~ 147 (204)
...++++.-+|.+... +.-.++-++++.|+++|+.+| .++. .. |+.--+|+++...++.
T Consensus 143 ~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vv--VD~t~a~p~~~~-pl~~GaDivv~S~tKy 211 (395)
T PRK05967 143 AKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVM--MDNTWATPLYFR-PLDFGVDISIHAATKY 211 (395)
T ss_pred HHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEE--EECCccCceecC-hhHcCCCEEEEecccc
Confidence 2344555555666543 467778888899999997544 4554 34 6665699988876644
No 236
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=61.89 E-value=45 Score=27.44 Aligned_cols=65 Identities=18% Similarity=0.079 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCeEEEecCC-CCCCCCCCcEEEE-----EeCCC--CCHHHHHHHHHHHHcCCeEEEEecCC
Q 028777 64 LKALCMRLAHLGISTHLVFDM-TTPPISSNDLLIA-----SAGPG--GFSTVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 64 a~~~~~~l~~lg~~~~~~~d~-~~~~~~~~DlvI~-----iS~sG--~t~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
+..++.+|...|+++..+.|. ....+.+=|.||+ .+..| +.--+..++-.||..|+|++..+...
T Consensus 123 G~~~a~~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~ 195 (253)
T PRK06372 123 GIDMAKLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISM 195 (253)
T ss_pred HHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeecc
Confidence 345667777789999888871 1122344556655 23322 23334556778999999999887653
No 237
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.78 E-value=33 Score=30.53 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=22.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
..++|.++|.|.|+..|-.+. .. |..+.+.+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L---~~-g~~v~v~D 35 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEEL---QN-KYDVIVYD 35 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHH---hC-CCEEEEEC
Confidence 357899999999997665543 23 77776654
No 238
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=61.64 E-value=62 Score=31.69 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhH---------------HHHHHHHHHHhh---------cCCeEEEecC------
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREG---------------LMLKALCMRLAH---------LGISTHLVFD------ 83 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~---------------~~a~~~~~~l~~---------lg~~~~~~~d------ 83 (204)
..++.++.+.+.....+.|.+.|.|+-. .+.+.+..++.. -|.+.-..++
T Consensus 449 d~~~Ai~~a~~~a~~gD~VLv~GsG~e~~~~~~~~~~~f~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 528 (958)
T PRK11929 449 DRAEAIRQAIWMAAPGDVILIAGKGHETYQEIGGRKLFFDDREWARRALLARISSTLIKLRAAKGGSNSLQINSLPHAGA 528 (958)
T ss_pred CHHHHHHHHHHhcCCCCEEEEeecCcchheEECCEecCCCHHHHHHHHHHhhhcccccchhhhcCcccccccccCcccCe
Confidence 4556777777766677889999999832 233344433321 1111111111
Q ss_pred --CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 84 --MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 84 --~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
.....+.++|++|++ .|...+--+.+..|.++|+..+....
T Consensus 529 i~~dSr~v~~g~lFval--~G~~~dGh~fi~~A~~~GA~~~i~~~ 571 (958)
T PRK11929 529 VSTDSRSVGRGELFVAL--RGENFDGHDYLPQAFAAGACAAVVER 571 (958)
T ss_pred EEeeCCccCCCCEEEEe--cCCCCCHHHHHHHHHHcCCEEEEECC
Confidence 234567899998887 47777788899999999998777664
No 239
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=61.33 E-value=99 Score=26.96 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC----C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD----M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d----~ 84 (204)
.....+.+++....+..++...+++.|.+.+.+-.. ...+...|..+..+.. .
T Consensus 62 ~~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~ 141 (398)
T PRK08249 62 TNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQ 141 (398)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHH
Confidence 345556777777777778888899888765332210 1113345666655431 1
Q ss_pred CCCCCCCCcEEEEEe----CCCCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 85 TTPPISSNDLLIASA----GPGGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS----~sG~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
....++++.-+|++. .+|...++-++++.|+++|+.+|. ++. .. |+...+|+++...+
T Consensus 142 l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~liv--D~t~a~~~~~~-~l~~~~Divv~S~s 209 (398)
T PRK08249 142 IEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVV--DNTFATPINQN-PLALGADLVIHSAT 209 (398)
T ss_pred HHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEE--ECCcCccccCC-chhhCCCEEeccCc
Confidence 222344444344432 235667777888999999986652 332 22 45556887665533
No 240
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=60.90 E-value=73 Score=27.15 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=48.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHh-hcCC-eEEEecC-----CCCCCCCCCcEEEEEeCCCC-C---HHHHHHHHHHHHc
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLA-HLGI-STHLVFD-----MTTPPISSNDLLIASAGPGG-F---STVDAICSRARSY 117 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~-~lg~-~~~~~~d-----~~~~~~~~~DlvI~iS~sG~-t---~~~~~~~~~ak~~ 117 (204)
-+++.+++...+..+|+.++.+|. .++. ....+.| .....+..+|++|+-|.+.. + -+++-++..+|+.
T Consensus 7 ~~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~ 86 (323)
T PRK02458 7 DKQIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRA 86 (323)
T ss_pred CCCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHc
Confidence 356778887778888888888775 2222 2223344 22344566789888887543 3 4555566889999
Q ss_pred CCe-EEEEe
Q 028777 118 GAR-VLLLT 125 (204)
Q Consensus 118 g~~-vI~iT 125 (204)
|++ +.++.
T Consensus 87 ~a~~i~lVi 95 (323)
T PRK02458 87 SANTVNVVL 95 (323)
T ss_pred CCceEEEEE
Confidence 995 44554
No 241
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=60.79 E-value=58 Score=27.17 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecC-CCCCCCCCCcEEEE----EeCCC---CCHHHHHHHHHHHHcCCeEEEEec
Q 028777 66 ALCMRLAHLGISTHLVFD-MTTPPISSNDLLIA----SAGPG---GFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 66 ~~~~~l~~lg~~~~~~~d-~~~~~~~~~DlvI~----iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
.++..|...|+++..+.| .....+.+=|.||+ +...| +.--+..++-.||.+|+|++..+.
T Consensus 151 ~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~ 219 (275)
T PRK08335 151 ALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAE 219 (275)
T ss_pred HHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECc
Confidence 456777778999998887 21222444567766 34445 334456677889999999998854
No 242
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=60.41 E-value=64 Score=27.60 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=51.2
Q ss_pred HhcCCcEEEEecchhHHHHHHHHHHHh-hcCC-eEEEecC-----CCCCCCCCCcEEEEEeCCCC-CH---HHHHHHHHH
Q 028777 46 ATQKGSVFLYGVGREGLMLKALCMRLA-HLGI-STHLVFD-----MTTPPISSNDLLIASAGPGG-FS---TVDAICSRA 114 (204)
Q Consensus 46 i~~a~~I~i~G~G~S~~~a~~~~~~l~-~lg~-~~~~~~d-----~~~~~~~~~DlvI~iS~sG~-t~---~~~~~~~~a 114 (204)
+...+++.+++.-.+..+|+.++.+|. .++. ....+.| .....+..+|++|+-|.+.. +. |++-++..+
T Consensus 16 ~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~al 95 (330)
T PRK02812 16 LSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDAC 95 (330)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHH
Confidence 446677888886667789999988875 2222 2223344 23345566789999886543 33 445566788
Q ss_pred HHcCCe-EEEEe
Q 028777 115 RSYGAR-VLLLT 125 (204)
Q Consensus 115 k~~g~~-vI~iT 125 (204)
|+.|++ +.++.
T Consensus 96 r~~ga~ri~~Vi 107 (330)
T PRK02812 96 RRASARQITAVI 107 (330)
T ss_pred HHhCCceEEEEE
Confidence 999985 44554
No 243
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=60.32 E-value=23 Score=30.33 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 107 VDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 107 ~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
-..+++.|++.|.+++.++.++++ |-.++||..+..+.
T Consensus 11 ~~~l~~aa~~~G~~v~~~d~~~~~-~~~~~ad~~~~~~~ 48 (380)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYANA-PAMQVAHRSYVINM 48 (380)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCC-chhhhCceEEEcCC
Confidence 455677799999999999999999 99899998876653
No 244
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=60.15 E-value=52 Score=23.83 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=46.8
Q ss_pred EEEEecch-hHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCC---HHHHHHHHHHHHcCCeEEEEecC
Q 028777 52 VFLYGVGR-EGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGF---STVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 52 I~i~G~G~-S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t---~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+|+.|.|. ...++.-+...|.+-|.++-.+..... .|++++=...|-. .+=...++.+++.+++++.+++.
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-----~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~ 77 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQT-----YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSA 77 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCCC-----CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcC
Confidence 45556553 234666677888888888888764221 5777766554422 11123556778889999999977
Q ss_pred CCC
Q 028777 128 PES 130 (204)
Q Consensus 128 ~~s 130 (204)
...
T Consensus 78 ~~g 80 (134)
T cd03109 78 GLG 80 (134)
T ss_pred CCC
Confidence 654
No 245
>PRK09330 cell division protein FtsZ; Validated
Probab=59.92 E-value=62 Score=28.35 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=40.5
Q ss_pred CCCCcEEEEEe-CCCCC--HHHHHHHHHHHHcCCeEEEEecCCCCc--------------chhhccCeEEEeCCccc
Q 028777 89 ISSNDLLIASA-GPGGF--STVDAICSRARSYGARVLLLTAQPESG--------------SSVKHASVVAYVPAQTM 148 (204)
Q Consensus 89 ~~~~DlvI~iS-~sG~t--~~~~~~~~~ak~~g~~vI~iT~~~~s~--------------~l~~~ad~~l~~~~~~~ 148 (204)
+..-|++|++. ..|.| -..--+++.+|+.|+.+++|-..|.+. .|.+.+|.++.++.+.-
T Consensus 95 l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L 171 (384)
T PRK09330 95 LEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKL 171 (384)
T ss_pred HcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHH
Confidence 34456665544 44443 222346788999999999888776541 47889999999987543
No 246
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=59.90 E-value=1e+02 Score=25.59 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc------------CCcEEEEecchhHHHHHHHHHHHhhcCCeEEE
Q 028777 13 ASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQ------------KGSVFLYGVGREGLMLKALCMRLAHLGISTHL 80 (204)
Q Consensus 13 ~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~------------a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~ 80 (204)
+..+.+.|.+.+..+++++.+.+++..+++.+.+.. .++.++.+-.. ..||. ..+|+....
T Consensus 130 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~a----f~Yl~---~~~gl~~~~ 202 (286)
T cd01019 130 AAEVAQAVAEKLSALDPDNAATYAANLEAFNARLAELDATIKERLAPVKTKPFFVFHDA----YGYFE---KRYGLTQAG 202 (286)
T ss_pred HHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEeccc----HHHHH---HHcCCceee
Confidence 445677888888888887666666666666555431 24445554332 22333 334554332
Q ss_pred ecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 81 VFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 81 ~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
+-. ..++ .....+++.++.+.+|+.|+++|..-...++
T Consensus 203 ~~~-----~~~~-------~eps~~~l~~l~~~ik~~~v~~If~e~~~~~ 240 (286)
T cd01019 203 VFT-----IDPE-------IDPGAKRLAKIRKEIKEKGATCVFAEPQFHP 240 (286)
T ss_pred eec-----CCCC-------CCCCHHHHHHHHHHHHHcCCcEEEecCCCCh
Confidence 110 0011 1235677888999999999999987666554
No 247
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=59.83 E-value=79 Score=24.40 Aligned_cols=95 Identities=8% Similarity=-0.074 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCc-EEEEecchhH--HHHHHHHHHHhhcCCeEEEecC---------CC--C---------------CCC-
Q 028777 40 AELTNTATQKGS-VFLYGVGREG--LMLKALCMRLAHLGISTHLVFD---------MT--T---------------PPI- 89 (204)
Q Consensus 40 ~~~~~~i~~a~~-I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d---------~~--~---------------~~~- 89 (204)
+.+++.|.+|+| ++++|.|... -..+.+.....++++++..-.. .. . .-+
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~ 104 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLD 104 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhc
Confidence 677888888755 5666777754 2344444444566777665321 00 0 011
Q ss_pred --CCCcEEEEEe-CCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEE
Q 028777 90 --SSNDLLIASA-GPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVA 141 (204)
Q Consensus 90 --~~~DlvI~iS-~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l 141 (204)
++-|++|++- .-.+...++..+|+... .++|+|... ....||+.|
T Consensus 105 g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~--~~~~~~~~~-----y~~~a~~s~ 152 (171)
T PRK00945 105 GNGNYDLVIFIGVTYYYASQGLSALKHFSP--LKTITIDRY-----YHPNADMSF 152 (171)
T ss_pred CCCCcCEEEEecCCchhHHHHHHHHhhcCC--ceEEEecCC-----cCCCCceec
Confidence 3556666554 44555666666666544 888888843 345677766
No 248
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=59.43 E-value=67 Score=24.85 Aligned_cols=68 Identities=26% Similarity=0.300 Sum_probs=42.9
Q ss_pred EecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHH---------HHHHHHHHHHcCCeEEEEe
Q 028777 55 YGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFST---------VDAICSRARSYGARVLLLT 125 (204)
Q Consensus 55 ~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~---------~~~~~~~ak~~g~~vI~iT 125 (204)
+|.|....++ .+|..+|..+..+.+. ..+.+-|.+|+ .-+|...+ ..+.++.+.++|.++++|+
T Consensus 6 ~g~~~~~~~~----~~l~~~g~~v~v~~~~--~~l~~~d~iii-pG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC 78 (198)
T cd01748 6 YGMGNLRSVA----NALERLGAEVIITSDP--EEILSADKLIL-PGVGAFGDAMANLRERGLIEALKEAIASGKPFLGIC 78 (198)
T ss_pred CCCChHHHHH----HHHHHCCCeEEEEcCh--HHhccCCEEEE-CCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEEC
Confidence 4555555554 5566778888877641 12445576666 44444332 3567777778899999998
Q ss_pred cCCC
Q 028777 126 AQPE 129 (204)
Q Consensus 126 ~~~~ 129 (204)
.-..
T Consensus 79 ~G~q 82 (198)
T cd01748 79 LGMQ 82 (198)
T ss_pred HHHH
Confidence 6544
No 249
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=59.31 E-value=55 Score=29.03 Aligned_cols=104 Identities=13% Similarity=-0.026 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCC-cEEEEecchhHHHHHHHHHHHhh--cCCeEEEecC------------C---CCCCCCCCcEEE
Q 028777 35 LDIMVAELTNTATQKG-SVFLYGVGREGLMLKALCMRLAH--LGISTHLVFD------------M---TTPPISSNDLLI 96 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a~~~~~~l~~--lg~~~~~~~d------------~---~~~~~~~~DlvI 96 (204)
-++.++.+++.+.+.+ ++.++|.|....-..++..+|.. +|.+...... . ....+.+-|++|
T Consensus 71 WdeAl~~ia~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il 150 (472)
T cd02771 71 WNEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHRARRLIAEILRNGPIYIPSLRDIESADAVL 150 (472)
T ss_pred HHHHHHHHHHHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcchhhhhhhhhcccCCCCCCHHHHHhCCEEE
Confidence 4678899999888765 78888777643322333334432 4432211100 0 011234567777
Q ss_pred EEeCC-CCCHHH-HHHH-HHHHHcCCeEEEEecCCCCcchhhccCeEE
Q 028777 97 ASAGP-GGFSTV-DAIC-SRARSYGARVLLLTAQPESGSSVKHASVVA 141 (204)
Q Consensus 97 ~iS~s-G~t~~~-~~~~-~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l 141 (204)
++... -.+... ...+ +.++++|..++.. .... +.++.+|..+
T Consensus 151 ~~G~n~~~~~p~~~~~~~~a~~~~~~~~v~~--~~~~-~~a~~a~~~~ 195 (472)
T cd02771 151 VLGEDLTQTAPRIALALRQAARRKAVELAAL--SGIP-KWQDAAVRNI 195 (472)
T ss_pred EEeCCccccchHHHHHHHHHHHcCCcEEEEc--CCCc-hHHHHHHHhc
Confidence 77643 333322 3333 4445665554333 3344 4555555544
No 250
>PRK05968 hypothetical protein; Provisional
Probab=59.15 E-value=1.2e+02 Score=26.29 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEec--C--CC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVF--D--MT 85 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~--d--~~ 85 (204)
....+.+++.+..+..++...+++.|.+.+.+-.. ...+...|..+..+. | ..
T Consensus 62 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l 141 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAV 141 (389)
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHH
Confidence 34456777777777777777888888754322111 011223455544432 1 11
Q ss_pred CCCCCCCcEEEEEeCCCCC---HHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIASAGPGGF---STVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~sG~t---~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
...+.+..++++-+-+|-. .++-++++.|+++|+.+|. ++. .. |+..-+|+++...+
T Consensus 142 ~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~viv--D~a~a~~~~~~-p~~~g~Divv~S~t 207 (389)
T PRK05968 142 AKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMI--DNSWASPVFQR-PITLGVDLVIHSAS 207 (389)
T ss_pred HHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEE--ECCCcchhccC-chhcCCcEEEeecc
Confidence 1123344677666666655 6777888999999987653 332 22 44445787776544
No 251
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=59.13 E-value=72 Score=26.05 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=53.9
Q ss_pred HHHhcCCcEEEEecchhHH-HHHHHHHH---HhhcC----CeEEEecC--CCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q 028777 44 NTATQKGSVFLYGVGREGL-MLKALCMR---LAHLG----ISTHLVFD--MTTPPISSNDLLIASAGPGGFSTVDAICSR 113 (204)
Q Consensus 44 ~~i~~a~~I~i~G~G~S~~-~a~~~~~~---l~~lg----~~~~~~~d--~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ 113 (204)
.++.+..+|+++|+|.-+. +++.+++. +..+| ..+..++. ...++++.. ++.-+--|..+..+..-+.
T Consensus 6 ~~~~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ--lf~~~dVG~~Ka~v~~~ri 83 (244)
T TIGR03736 6 ALLSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ--AFYPADVGQNKAIVLVNRL 83 (244)
T ss_pred HHHhCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc--cCChhHCCcHHHHHHHHHH
Confidence 3457889999999999653 66665553 33344 24555543 333444444 2333444776665543333
Q ss_pred HHHcCCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 114 ARSYGARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 114 ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
-+-.++.+.+....-........+|+++.+-
T Consensus 84 ~~~~~~~i~a~~~~~~~~~~~~~~DiVi~av 114 (244)
T TIGR03736 84 NQAMGTDWTAHPERVERSSTLHRPDIVIGCV 114 (244)
T ss_pred HhccCceEEEEEeeeCchhhhcCCCEEEECC
Confidence 3334677777764332102333467766553
No 252
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=58.88 E-value=54 Score=26.79 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-----------c-CCcEEEEecchhHHHHHHHHHHHhhcCCeEEE
Q 028777 13 ASQICNQIASIFSKPTAPHPPPLDIMVAELTNTAT-----------Q-KGSVFLYGVGREGLMLKALCMRLAHLGISTHL 80 (204)
Q Consensus 13 ~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~-----------~-a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~ 80 (204)
+..+.+.|.+.+..+++++++.+++..+.+.+.+. . .++.++..-. . |.|....+|+....
T Consensus 121 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~----a---f~Y~~~~ygl~~~~ 193 (266)
T cd01018 121 AKIMAENIYEALAELDPQNATYYQANLDALLAELDALDSEIRTILSKLKQRAFMVYHP----A---WGYFARDYGLTQIP 193 (266)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECc----h---hHHHHHHcCCEEEe
Confidence 34677788888888888776666666666554433 1 2333433222 2 23333445665543
Q ss_pred ecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchh
Q 028777 81 VFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSV 134 (204)
Q Consensus 81 ~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~ 134 (204)
+. .++ .....+++.++.+.+|+.|+++|..-...++ +..
T Consensus 194 ~~-------~~~-------~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-~~~ 232 (266)
T cd01018 194 IE-------EEG-------KEPSPADLKRLIDLAKEKGVRVVFVQPQFST-KSA 232 (266)
T ss_pred cC-------CCC-------CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc-HHH
Confidence 11 000 1135568889999999999998888766665 443
No 253
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=58.64 E-value=33 Score=28.70 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=23.8
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
..+++.++|.|. ++..+...|..+|..+...+
T Consensus 151 ~g~kvlViG~G~---iG~~~a~~L~~~Ga~V~v~~ 182 (296)
T PRK08306 151 HGSNVLVLGFGR---TGMTLARTLKALGANVTVGA 182 (296)
T ss_pred CCCEEEEECCcH---HHHHHHHHHHHCCCEEEEEE
Confidence 468999999997 45556667777887777654
No 254
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=58.43 E-value=55 Score=29.32 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD 83 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d 83 (204)
.++|.++|.|.|+..+- ..|.+.|..+.+.++
T Consensus 7 ~~kv~V~GLG~sG~a~a---~~L~~~G~~v~v~D~ 38 (448)
T COG0771 7 GKKVLVLGLGKSGLAAA---RFLLKLGAEVTVSDD 38 (448)
T ss_pred CCEEEEEecccccHHHH---HHHHHCCCeEEEEcC
Confidence 78999999999996553 445666777777653
No 255
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=58.36 E-value=93 Score=24.76 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=43.8
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecC------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFD------MTTPPISSNDLLIASAGPGGFSTVDAICSRA 114 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~a 114 (204)
+.+.+++... +.+.+.......++.+...++ .....++.+++.|.+|.+|.++-+-..++.-
T Consensus 75 lviaAt~d~~-ln~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~ 142 (210)
T COG1648 75 LVIAATDDEE-LNERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLREK 142 (210)
T ss_pred EEEEeCCCHH-HHHHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHHH
Confidence 4444555544 555666666777888888765 3345568899999999999998887766553
No 256
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=58.12 E-value=83 Score=26.74 Aligned_cols=76 Identities=11% Similarity=0.190 Sum_probs=48.0
Q ss_pred CcEEEEecchhHHHHHHHHHHHh-hcCC-eEEEecC-----CCCCCCCCCcEEEEEeCCCC----CHHHHHHHHHHHHcC
Q 028777 50 GSVFLYGVGREGLMLKALCMRLA-HLGI-STHLVFD-----MTTPPISSNDLLIASAGPGG----FSTVDAICSRARSYG 118 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~-~lg~-~~~~~~d-----~~~~~~~~~DlvI~iS~sG~----t~~~~~~~~~ak~~g 118 (204)
+...+++...+..+|+.++.+|. .++. ....+.| .....+..+|++|+-|.+.. --|++-++..+|+.|
T Consensus 4 ~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~ 83 (320)
T PRK02269 4 SDLKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRAS 83 (320)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhC
Confidence 45667776667788888888875 2222 2223444 22344566789999887652 244556668899999
Q ss_pred Ce-EEEEe
Q 028777 119 AR-VLLLT 125 (204)
Q Consensus 119 ~~-vI~iT 125 (204)
++ +.++.
T Consensus 84 a~~i~~V~ 91 (320)
T PRK02269 84 AESINVVM 91 (320)
T ss_pred CCeEEEEE
Confidence 86 44554
No 257
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=57.89 E-value=92 Score=25.44 Aligned_cols=84 Identities=10% Similarity=0.049 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcC-CeEEEecC---------------CCCCCCCCCcEEEEEeCC
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLG-ISTHLVFD---------------MTTPPISSNDLLIASAGP 101 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg-~~~~~~~d---------------~~~~~~~~~DlvI~iS~s 101 (204)
.+.++.+.+++.+.-....++.+...++.+..++...+ +..+...+ .....+.+.+++++
T Consensus 113 g~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I---- 188 (260)
T PLN03243 113 GSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF---- 188 (260)
T ss_pred CHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE----
Confidence 56666667766655555555555544443333222111 12233222 11124556666665
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCC
Q 028777 102 GGFSTVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 102 G~t~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
|.+.. =++.|+..|+++|++++..
T Consensus 189 gDs~~---Di~aA~~aG~~~i~v~g~~ 212 (260)
T PLN03243 189 GNSNS---SVEAAHDGCMKCVAVAGKH 212 (260)
T ss_pred cCCHH---HHHHHHHcCCEEEEEecCC
Confidence 55543 3456788899999998543
No 258
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=57.85 E-value=13 Score=28.07 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=24.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCC
Q 028777 93 DLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 93 DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
.|++.+|.+|.|+.+.+ ..++..|+.++-|....
T Consensus 2 ~LVvYyS~tGnT~~vA~--~Ia~~~gadi~eI~~~~ 35 (156)
T PF12682_consen 2 TLVVYYSRTGNTKKVAE--KIAEKTGADIFEIEPVK 35 (156)
T ss_dssp EEEEE--SSSHHHHHHH--HHHHCCT-EEEE-BBST
T ss_pred EEEEEECCCchHHHHHH--HHHHHHCCCEEEEEeCC
Confidence 58999999999999866 44677899999998543
No 259
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=57.76 E-value=56 Score=27.34 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=29.5
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
.+-|++|+...+-.+.+.++.++..-..+..++.+-+.-++
T Consensus 69 ~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~ 109 (305)
T PRK05708 69 EPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGS 109 (305)
T ss_pred cccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCC
Confidence 35699999999988887777666655567777777655443
No 260
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=57.34 E-value=1.4e+02 Score=26.36 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=54.6
Q ss_pred HHHHHHHhhcCCeEEEecC----CCCCCCCCCcEEEEEe---CC-CCCHHHHHHHHHHHHcCCeEEEEecCC----CCcc
Q 028777 65 KALCMRLAHLGISTHLVFD----MTTPPISSNDLLIASA---GP-GGFSTVDAICSRARSYGARVLLLTAQP----ESGS 132 (204)
Q Consensus 65 ~~~~~~l~~lg~~~~~~~d----~~~~~~~~~DlvI~iS---~s-G~t~~~~~~~~~ak~~g~~vI~iT~~~----~s~~ 132 (204)
..|...|.++|+.+.++.. .....+++++=+|.+- ++ +.-.++-.+++.|+++|++.|.=.... -. |
T Consensus 116 ~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~r-P 194 (426)
T COG2873 116 NLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCR-P 194 (426)
T ss_pred HHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecc-h
Confidence 4577788999999999875 3345667776555543 22 355678888999999999876422221 12 6
Q ss_pred hhhccCeEEEeCC
Q 028777 133 SVKHASVVAYVPA 145 (204)
Q Consensus 133 l~~~ad~~l~~~~ 145 (204)
+..-||++++..+
T Consensus 195 ~~hGADIVvHS~T 207 (426)
T COG2873 195 IEHGADIVVHSAT 207 (426)
T ss_pred hhcCCCEEEEeec
Confidence 6777999887644
No 261
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=57.33 E-value=49 Score=25.73 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=43.3
Q ss_pred EecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHH---------HHHHHHHHHHcCCeEEEEe
Q 028777 55 YGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFST---------VDAICSRARSYGARVLLLT 125 (204)
Q Consensus 55 ~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~---------~~~~~~~ak~~g~~vI~iT 125 (204)
||.|.-... .++|..+|..+..+.+ ...+.+-|.+| +.-+|.... ..+.++.+.+.|.|+++|+
T Consensus 7 ~g~gn~~~~----~~~l~~~g~~v~~~~~--~~~l~~~d~li-lpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC 79 (199)
T PRK13181 7 YGAGNLRSV----ANALKRLGVEAVVSSD--PEEIAGADKVI-LPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGIC 79 (199)
T ss_pred CCCChHHHH----HHHHHHCCCcEEEEcC--hHHhccCCEEE-ECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEEC
Confidence 344444444 4467778988887754 12234457765 444455322 2345555667899999999
Q ss_pred cCCCCcchhhc
Q 028777 126 AQPESGSSVKH 136 (204)
Q Consensus 126 ~~~~s~~l~~~ 136 (204)
....- +++.
T Consensus 80 ~G~Ql--l~~~ 88 (199)
T PRK13181 80 LGMQL--LFES 88 (199)
T ss_pred HhHHH--hhhh
Confidence 76543 5544
No 262
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=57.19 E-value=58 Score=25.69 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=42.8
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEecC------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVFD------MTTPPISSNDLLIASAGPGGFSTVDAICSRA 114 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~a 114 (204)
.+.+.++|.... -..+.......|+.+...++ .....+..+++.|.+|.+|.++.+-..++.-
T Consensus 71 ~lVi~at~d~~l-n~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ 139 (205)
T TIGR01470 71 FLVIAATDDEEL-NRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRER 139 (205)
T ss_pred EEEEECCCCHHH-HHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHH
Confidence 445566666543 33444445567888877665 2334568899999999999999887666543
No 263
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=56.97 E-value=55 Score=26.39 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=38.5
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecC------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFD------MTTPPISSNDLLIASAGPGGFSTVDAICSR 113 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ 113 (204)
+.+.+++. ..+-+.+.......|+.+...++ .....+..+++.|.+|.+|.++.+...++.
T Consensus 88 LViaATdD-~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~ 154 (223)
T PRK05562 88 LIVIATDD-EKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGE 154 (223)
T ss_pred EEEECCCC-HHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHH
Confidence 34444443 23334444444555766776654 233456889999999999999888766654
No 264
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=56.66 E-value=1.3e+02 Score=25.99 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHH----------------------HHHHHHhhcCCeEEEec--C--CCCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLK----------------------ALCMRLAHLGISTHLVF--D--MTTP 87 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~----------------------~~~~~l~~lg~~~~~~~--d--~~~~ 87 (204)
...+.+++....+..++..++++.|.+.+.+- .+...+...|+.+..+. | ....
T Consensus 50 p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ 129 (380)
T PRK06176 50 PTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKK 129 (380)
T ss_pred hhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHH
Confidence 44556666666666677777777777643221 01112233454444332 1 1112
Q ss_pred CCCCCcEEEEE-e---CCCCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 88 PISSNDLLIAS-A---GPGGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~~DlvI~i-S---~sG~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
.++++.-+|++ + .+|...++-++++.|+++|+.+|. ++. .. |+.-.+|+++...+
T Consensus 130 ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~viv--D~t~a~~~~~~-p~~~gaDivv~S~t 194 (380)
T PRK06176 130 AIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIV--DNTFATPYYQN-PLLLGADIVVHSGT 194 (380)
T ss_pred hcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEE--ECCccccccCC-ccccCCCEEEecCc
Confidence 33444434443 2 234556788888999999986653 332 23 55556887776644
No 265
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=56.56 E-value=26 Score=28.78 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=49.3
Q ss_pred HHHHHHHHh--cCCcEE-EEecchhHHHHHHHHHHHhhcCCeEEEec------C-----CCCCCCCCCcEEEEEeCCCCC
Q 028777 39 VAELTNTAT--QKGSVF-LYGVGREGLMLKALCMRLAHLGISTHLVF------D-----MTTPPISSNDLLIASAGPGGF 104 (204)
Q Consensus 39 l~~~~~~i~--~a~~I~-i~G~G~S~~~a~~~~~~l~~lg~~~~~~~------d-----~~~~~~~~~DlvI~iS~sG~t 104 (204)
++++-+.+. +.+++. ++|.+.-..+++.+...|...|+.+..+. + .....+.+.+.=+++...|.+
T Consensus 7 ~~~l~~~l~~~~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~ 86 (250)
T PF13685_consen 7 LDKLPEILSELGLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGT 86 (250)
T ss_dssp GGGHHHHHGGGT-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHH
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcH
Confidence 334444443 235554 55555566778889999999998887543 1 122344333333444444444
Q ss_pred HHHHHHHHH-HHHcCCeEEEEecCCCC
Q 028777 105 STVDAICSR-ARSYGARVLLLTAQPES 130 (204)
Q Consensus 105 ~~~~~~~~~-ak~~g~~vI~iT~~~~s 130 (204)
+.+++|+ |.+.|.+.+++-..+..
T Consensus 87 --i~D~~K~~A~~~~~p~isVPTa~S~ 111 (250)
T PF13685_consen 87 --IIDIAKYAAFELGIPFISVPTAASH 111 (250)
T ss_dssp --HHHHHHHHHHHHT--EEEEES--SS
T ss_pred --HHHHHHHHHHhcCCCEEEecccccc
Confidence 7888887 66679999998766554
No 266
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=56.54 E-value=19 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 100 GPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 100 ~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
+||.|.+++..++..+.+|.+|+.+|..-++
T Consensus 14 ~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~ 44 (201)
T COG1435 14 FSGKTEELLRRARRYKEAGMKVLVFKPAIDT 44 (201)
T ss_pred cCcchHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 6999999999999999999999999988776
No 267
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=56.34 E-value=29 Score=27.29 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHcCCeEEEEecC
Q 028777 91 SNDLLIASAGPGGFSTV-DAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~-~~~~~~ak~~g~~vI~iT~~ 127 (204)
.+.++|++|--|.-+.+ ..+++.+.++|++||+|-+.
T Consensus 1 ~Dt~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl 38 (192)
T PF06057_consen 1 SDTLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSL 38 (192)
T ss_pred CCEEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechH
Confidence 36789999998877766 56778899999999999753
No 268
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=56.04 E-value=1.3e+02 Score=25.86 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC----CCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD----MTT 86 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d----~~~ 86 (204)
...+.+++....+..++.+++++.|.+...+-.. ...+...|..+..+.. ...
T Consensus 54 p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~ 133 (380)
T TIGR01325 54 PTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWE 133 (380)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHH
Confidence 3344555555555566777777777654332211 1122334555554431 111
Q ss_pred CCCCCCcEEEEEe----CCCCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 87 PPISSNDLLIASA----GPGGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 87 ~~~~~~DlvI~iS----~sG~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
..++++.-+|++. ..|...++-++.+.|+++|+.+|. ++. .. |+.--+|+++...+
T Consensus 134 ~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~liv--D~a~~~~~~~~-pl~~g~Divv~S~s 199 (380)
T TIGR01325 134 AAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVV--DNVFATPVLQQ-PLKLGADVVVYSAT 199 (380)
T ss_pred HhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEE--ECCCcccccCC-chhhCCCEEEeecc
Confidence 2234444344442 245667788888999999987662 222 23 55445887776543
No 269
>PRK07671 cystathionine beta-lyase; Provisional
Probab=55.98 E-value=1.3e+02 Score=25.88 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHH----------------------HHHHHhhcCCeEEEec--C--CCCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKA----------------------LCMRLAHLGISTHLVF--D--MTTP 87 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~----------------------~~~~l~~lg~~~~~~~--d--~~~~ 87 (204)
...+.+++....+..++.-.++|.|.+.+.+-. +...+.+.|..+..+. | ....
T Consensus 50 p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ 129 (377)
T PRK07671 50 PTRAALEELIAVLEGGHAGFAFGSGMAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEE 129 (377)
T ss_pred hHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHH
Confidence 334455555555555666666777764332210 1111223454444433 1 1122
Q ss_pred CCCCCcEEEEEeCC----CCCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCC
Q 028777 88 PISSNDLLIASAGP----GGFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~~DlvI~iS~s----G~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~ 145 (204)
.++++.-+|++..+ |...++-++.+.|+++|+.+|. ++.. . |+.-.+|+++...+
T Consensus 130 ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvv--D~a~~~~~~~~-p~~~g~Divv~S~s 194 (377)
T PRK07671 130 AIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIV--DNTFMTPYWQS-PISLGADIVLHSAT 194 (377)
T ss_pred hcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEE--ECCCCccccCC-hhhhCCeEEEecCc
Confidence 34455445554333 4456778888999999986653 3332 2 45556777666644
No 270
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=55.97 E-value=41 Score=28.39 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecC-CCCCCCC--CCcEEEE----EeCCC---CCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 66 ALCMRLAHLGISTHLVFD-MTTPPIS--SNDLLIA----SAGPG---GFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 66 ~~~~~l~~lg~~~~~~~d-~~~~~~~--~~DlvI~----iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.++..|...|+++..+.| .....+. +=|.||+ +...| +.--+..++-.||..|+|++.++..
T Consensus 169 ~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s 240 (303)
T TIGR00524 169 LTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPL 240 (303)
T ss_pred HHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEeccc
Confidence 345667777888888887 2222333 4566665 33334 3444566778899999999999854
No 271
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=55.84 E-value=99 Score=26.02 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=46.2
Q ss_pred EEEEecchhHHHHHHHHHHHh-hcCC-eEEEecC-----CCCCCCCCCcEEEEEeCCCCCH---HHHHHHHHHHHcCCe-
Q 028777 52 VFLYGVGREGLMLKALCMRLA-HLGI-STHLVFD-----MTTPPISSNDLLIASAGPGGFS---TVDAICSRARSYGAR- 120 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~-~lg~-~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~---~~~~~~~~ak~~g~~- 120 (204)
..+++...+..+|+..+.+|. .++. ...-+.| .....+..+|++|+-|.+..+. |++-++..+|+.|++
T Consensus 3 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~ 82 (301)
T PRK07199 3 PLLLALPGNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARR 82 (301)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCe
Confidence 346666667778888888774 2222 2223344 2234556789999999765444 444555778999986
Q ss_pred EEEEec
Q 028777 121 VLLLTA 126 (204)
Q Consensus 121 vI~iT~ 126 (204)
+.++..
T Consensus 83 i~~ViP 88 (301)
T PRK07199 83 VGLVAP 88 (301)
T ss_pred EEEEee
Confidence 445543
No 272
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=55.31 E-value=95 Score=23.94 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhc-----CCcEEEEec-chhHHHHHHHHHHHhh-cCC---eEEEecC---------C---CCCCCC
Q 028777 33 PPLDIMVAELTNTATQ-----KGSVFLYGV-GREGLMLKALCMRLAH-LGI---STHLVFD---------M---TTPPIS 90 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~-----a~~I~i~G~-G~S~~~a~~~~~~l~~-lg~---~~~~~~d---------~---~~~~~~ 90 (204)
+++++.+++++..|.+ .+.+.+.|. .++...|..+...|.. ..+ .+....+ . ....+.
T Consensus 12 ~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~ 91 (178)
T PRK15423 12 AEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIR 91 (178)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCcccCceEEecCCCCCCC
Confidence 3667777888777753 235777777 4477888888888853 221 2222221 0 112345
Q ss_pred CCcEEEE--EeCCCCCHHHHHHHHHHHHcCCe---EEEEecCCC
Q 028777 91 SNDLLIA--SAGPGGFSTVDAICSRARSYGAR---VLLLTAQPE 129 (204)
Q Consensus 91 ~~DlvI~--iS~sG~t~~~~~~~~~ak~~g~~---vI~iT~~~~ 129 (204)
..+++|+ +--||.|-. .+.+.++.+|+. +.++-..+.
T Consensus 92 gk~VLlVDDIiDTG~TL~--~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 92 GKDVLIVEDIIDSGNTLS--KVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred CCEEEEEeeecCchHHHH--HHHHHHHhCCCCEEEEEEEEECCC
Confidence 6788887 677887744 677778887654 455555554
No 273
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=55.26 E-value=44 Score=28.99 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=43.2
Q ss_pred CcEEEEe-cchhHHHHHHHHHHHhhcCCeEEEecC--C--CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEE
Q 028777 50 GSVFLYG-VGREGLMLKALCMRLAHLGISTHLVFD--M--TTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLL 124 (204)
Q Consensus 50 ~~I~i~G-~G~S~~~a~~~~~~l~~lg~~~~~~~d--~--~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~i 124 (204)
.+|.++| .| .++..++..|..-|..+...+. . ....+.+-|+||+...-....++++-+.. ...|+-++-+
T Consensus 99 ~~I~IiGG~G---lmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv 174 (374)
T PRK11199 99 RPVVIVGGKG---QLGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDL 174 (374)
T ss_pred ceEEEEcCCC---hhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEEC
Confidence 6788887 55 4566666777777777666542 1 00113345666666555544444433322 2235555556
Q ss_pred ecCCCCcchhh
Q 028777 125 TAQPESGSSVK 135 (204)
Q Consensus 125 T~~~~s~~l~~ 135 (204)
|+.+.. ++..
T Consensus 175 ~SvK~~-~~~~ 184 (374)
T PRK11199 175 TSVKNA-PLQA 184 (374)
T ss_pred CCccHH-HHHH
Confidence 555444 4433
No 274
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=55.17 E-value=91 Score=25.53 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=28.3
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPE 129 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~ 129 (204)
.+-|++|+...+....++++.+...-..+..+|.+.+.-+
T Consensus 65 ~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 GPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 4569999999988887777766554445567777766543
No 275
>PRK04148 hypothetical protein; Provisional
Probab=55.09 E-value=83 Score=23.22 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=45.1
Q ss_pred CCcEEEEecchhH-HHHHHHHHHHhhcCCeEEEec-------------------CCCCCCCC-CCcEEEEEeCCCCCHHH
Q 028777 49 KGSVFLYGVGREG-LMLKALCMRLAHLGISTHLVF-------------------DMTTPPIS-SNDLLIASAGPGGFSTV 107 (204)
Q Consensus 49 a~~I~i~G~G~S~-~~a~~~~~~l~~lg~~~~~~~-------------------d~~~~~~~-~~DlvI~iS~sG~t~~~ 107 (204)
..+|...|+| ++ .+|..++ ..|..+..++ |...+.+. -++.=++-|...-.+-.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~----~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~ 91 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLK----ESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHH----HCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence 4679999999 55 4776555 5576666653 12222221 12333445554443444
Q ss_pred HHHHHHHHHcCCeEEEEecCCCC
Q 028777 108 DAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 108 ~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
-.+++.|++.|+..+.-+=..+.
T Consensus 92 ~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 92 PFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Confidence 55678899999987765544433
No 276
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=54.76 E-value=98 Score=24.09 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=45.8
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHH-------HHHHHHHHHHcCCeEEE
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFST-------VDAICSRARSYGARVLL 123 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~-------~~~~~~~ak~~g~~vI~ 123 (204)
+|.+.-.|.... ..++..|...|..+..+.+. ..+.+-|.+|+ +-+|...+ ..+.++.+.++|.++++
T Consensus 2 ~~~v~~~~~~~~--~~~~~~l~~~G~~~~~~~~~--~~~~~~d~iii-~G~~~~~~~~~~~~~~~~~i~~~~~~~~Pilg 76 (200)
T PRK13143 2 MIVIIDYGVGNL--RSVSKALERAGAEVVITSDP--EEILDADGIVL-PGVGAFGAAMENLSPLRDVILEAARSGKPFLG 76 (200)
T ss_pred eEEEEECCCccH--HHHHHHHHHCCCeEEEECCH--HHHccCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 344555554333 45667777788888777541 22345577666 33333333 45667778889999999
Q ss_pred EecCCC
Q 028777 124 LTAQPE 129 (204)
Q Consensus 124 iT~~~~ 129 (204)
|+....
T Consensus 77 IC~G~q 82 (200)
T PRK13143 77 ICLGMQ 82 (200)
T ss_pred ECHHHH
Confidence 997654
No 277
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=54.72 E-value=21 Score=27.54 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=35.8
Q ss_pred EEEEeCCCCCH---HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCe
Q 028777 95 LIASAGPGGFS---TVDAICSRARSYGARVLLLTAQPESGSSVKHASV 139 (204)
Q Consensus 95 vI~iS~sG~t~---~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~ 139 (204)
|-+|...|+.- .+.++++.|.+.|...|.|+.+... |++++-||
T Consensus 21 vrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~P-PVcKImDY 67 (176)
T COG0290 21 VRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKP-PVCKIMDY 67 (176)
T ss_pred EEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCC-CeeEeeec
Confidence 44555556543 4678899999999999999999999 99999887
No 278
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=54.65 E-value=1.4e+02 Score=25.90 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHH-----------------------HHHhhcCCeEEEec--C--C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALC-----------------------MRLAHLGISTHLVF--D--M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~-----------------------~~l~~lg~~~~~~~--d--~ 84 (204)
+....+.+++....+..++...+++.|.+.+.+-... ..+...|..+..+. | .
T Consensus 57 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~ 136 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE 136 (391)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence 4455667888777777888889999998654322111 11122344333332 1 1
Q ss_pred CCCCCCCCcEEEEEe----CCCCCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCC
Q 028777 85 TTPPISSNDLLIASA----GPGGFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPA 145 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS----~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~ 145 (204)
....++++.-+|++. ..|...++-++++.|+++|+.+|. ++.. . |+...+|+++...+
T Consensus 137 l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~liv--D~a~a~~~~~~-~~~~g~Divv~S~s 204 (391)
T TIGR01328 137 VKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIV--DNTFATPMLTN-PVALGVDVVVHSAT 204 (391)
T ss_pred HHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEE--ECCCchhccCC-chhcCCCEEEcccc
Confidence 112234444444433 255556788888999999987653 3332 2 45567887665543
No 279
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=54.51 E-value=48 Score=32.07 Aligned_cols=90 Identities=19% Similarity=0.144 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEe-cC------------------CCCC---CCCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLV-FD------------------MTTP---PISS 91 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~-~d------------------~~~~---~~~~ 91 (204)
.-++.++.+++.+++.+..+.+|.+....-..++..+| +|-+-+.. .+ .... .+.+
T Consensus 294 sWdeAl~~ia~~l~~~~~~~G~~s~~~t~e~~~~l~k~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ 371 (847)
T PRK08166 294 NADQALQGAADILRQAKKVIGIGSPRASLESNFALREL--VGAENFYTGIAAGEQERLQLALKVLREGGIYTPSLREIES 371 (847)
T ss_pred CHHHHHHHHHHHHHhhcceEEEECCCcchHHHHHHHHH--hCCCCcccccChHHhhhhhHHHHHhhcCCCCCCCHHHHHh
Confidence 34678999999999888777677666544444444444 33321110 00 0011 1234
Q ss_pred CcEEEEEeCC-CCCH-HHHHHHHHHHHcCCeEEEEe
Q 028777 92 NDLLIASAGP-GGFS-TVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 92 ~DlvI~iS~s-G~t~-~~~~~~~~ak~~g~~vI~iT 125 (204)
-|++|++... .++. .+...++.|+++|+++|.+-
T Consensus 372 ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklivid 407 (847)
T PRK08166 372 YDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAA 407 (847)
T ss_pred CCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeec
Confidence 5777777543 3333 34445677888999876544
No 280
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=54.47 E-value=27 Score=27.18 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=29.9
Q ss_pred CCCCcEEEEEeCCC---CCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 89 ISSNDLLIASAGPG---GFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 89 ~~~~DlvI~iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+.++|++++-+.+. +..+++..++.++++|+.+++++..
T Consensus 59 ~~~gd~lvv~~ldRl~R~~~d~~~~~~~l~~~gv~l~~~~~~ 100 (200)
T PRK13413 59 MRKGDILIVSELSRLGRNLMEIMSILNICMEKEVIVYTIKEG 100 (200)
T ss_pred HhCCCEEEEEeCchhcCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45679999988765 4455666677788999999999854
No 281
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=54.26 E-value=24 Score=28.68 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=42.1
Q ss_pred HHhhcCCeEEEecCCCCC-----CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Q 028777 70 RLAHLGISTHLVFDMTTP-----PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 70 ~l~~lg~~~~~~~d~~~~-----~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 123 (204)
.|..+|+.++.+.+.... --...|..-+=+.-|...++.++++.|+++|++||.
T Consensus 12 yl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 12 YLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp HHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEE
Confidence 678899999998872211 123456666777889999999999999999999984
No 282
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=53.76 E-value=8.1 Score=31.73 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=42.3
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEE
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAY 142 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~ 142 (204)
.+.+.|++|++-.||.....-.+...++++|+.++.|-. ..+ ++...+|..+.
T Consensus 179 ~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~-~~~-~~~~~~d~~i~ 231 (250)
T COG0846 179 ALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINL-EPT-RLDPIADEVIR 231 (250)
T ss_pred HhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECC-Ccc-cCcchhHHHHH
Confidence 447889999999999998888866779999999888875 445 67777776553
No 283
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=53.73 E-value=69 Score=30.56 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=35.5
Q ss_pred CCCcEEEEEeCC-CCCH---------HHHHHHHHHHHcCCeEEEEecCCCCcchhhc-cCeEEEeCC
Q 028777 90 SSNDLLIASAGP-GGFS---------TVDAICSRARSYGARVLLLTAQPESGSSVKH-ASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS~s-G~t~---------~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~-ad~~l~~~~ 145 (204)
..-|++|++... ..+. .....++.+|++|+++|.|-.. .+ +.++. +|..|.+..
T Consensus 166 ~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr-~t-~tA~~aaD~~l~irP 230 (770)
T TIGR00509 166 ENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPV-RT-ETAEFFGAEWIPPNP 230 (770)
T ss_pred hcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCC-CC-cchhhccCeEeCcCC
Confidence 445677776543 2221 2346677789999998888755 45 67776 588887643
No 284
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.52 E-value=1.6e+02 Score=25.86 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=40.2
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCC--C--CC----------C--CCCcEEEEEe--CCCCCHHHHHHHH
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMT--T--PP----------I--SSNDLLIASA--GPGGFSTVDAICS 112 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~--~--~~----------~--~~~DlvI~iS--~sG~t~~~~~~~~ 112 (204)
+|.++|.|.|+..+ +..|. .|..+...++.. . .. . .+.|++ +.| .+...+++..+.+
T Consensus 2 ~v~v~G~G~sG~a~---a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~~~~~~~~~~d~v-v~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 2 KISLFGYGKTTKAL---AKFLK-KFGGVDIFDDKFTESHKDEEGNLLLPSNDFDPNKSDLE-IPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred eEEEEeECHHHHHH---HHHHh-CCCeEEEEcCCCCccchhhcCCEEecHHHcCcCCCCEE-EECCCCCCCCHHHHHHHH
Confidence 58999999999733 33355 777766654310 0 00 1 134644 444 3445565554422
Q ss_pred ------HHHHcCCeEEEEecCCC
Q 028777 113 ------RARSYGARVLLLTAQPE 129 (204)
Q Consensus 113 ------~ak~~g~~vI~iT~~~~ 129 (204)
.+.+.-.++|+||+..+
T Consensus 77 i~~~~e~~~~~~~~~i~ITGT~G 99 (401)
T PRK03815 77 LISEYDYFYDVMPFSIWISGTNG 99 (401)
T ss_pred HhhHHHHHHHhcCCEEEEECCCc
Confidence 12222245899998854
No 285
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=53.49 E-value=29 Score=26.09 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=39.2
Q ss_pred cEEEEecchhHHHHHHHHHHHhh----cCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 51 SVFLYGVGREGLMLKALCMRLAH----LGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~----lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
.+.+...|.++..+..+..++.. ...+.+++ .++-+|+.-..+.....+.+.++++.+++.|+++|.+|.
T Consensus 31 ~~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i------~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~ 104 (183)
T cd04501 31 GKEVINRGINGDTTSQMLVRFYEDVIALKPAVVII------MGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASP 104 (183)
T ss_pred CCeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEE------EeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 34555555555544444444432 22222222 233444432223333445566788889999999999886
Q ss_pred CCC
Q 028777 127 QPE 129 (204)
Q Consensus 127 ~~~ 129 (204)
.+.
T Consensus 105 ~p~ 107 (183)
T cd04501 105 LPV 107 (183)
T ss_pred CCc
Confidence 543
No 286
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=53.48 E-value=35 Score=27.73 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=39.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHH-HcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 92 NDLLIASAGPGGFSTVDAICSRAR-SYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~ak-~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
+-++|.-|..=..+.+.+.++.+| ..+.|+|..-++.+. +.+.+|.+|....
T Consensus 43 DaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~--is~~aDavff~sv 95 (240)
T COG1646 43 DAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSG--ISPYADAVFFPSV 95 (240)
T ss_pred CEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhc--cCccCCeEEEEEE
Confidence 334444444334477888999999 789999999999876 9999999886643
No 287
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=53.29 E-value=29 Score=28.76 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCC
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGI 76 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~ 76 (204)
....+++.....++|++||...=...|+.|+..+...|+
T Consensus 80 ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~i~~~Gl 118 (277)
T PF09994_consen 80 AYRFLSKNYEPGDRIYLFGFSRGAYTARAFANMIDKIGL 118 (277)
T ss_pred HHHHHHhccCCcceEEEEecCccHHHHHHHHHHHhhcCC
Confidence 444444555678999999999999999999999988887
No 288
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=53.22 E-value=17 Score=25.18 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccC
Q 028777 105 STVDAICSRARSYGARVLLLTAQPESGSSVKHAS 138 (204)
Q Consensus 105 ~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad 138 (204)
+...++++.++++|.+++.+|++... +-..+++
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~-s~~~~~~ 49 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSR-SREEYAK 49 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS--HHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCC-CHHHHHH
Confidence 45678889999999999999999877 6555544
No 289
>PRK07503 methionine gamma-lyase; Provisional
Probab=52.82 E-value=1.2e+02 Score=26.36 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEec--C--C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVF--D--M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~--d--~ 84 (204)
.....+.+++....+.++....+++.|.+.+..-.. ...+...|..+..+. | .
T Consensus 63 ~~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 142 (403)
T PRK07503 63 SNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAA 142 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHH
Confidence 344566777776677777777888888765321110 011223455444432 1 1
Q ss_pred CCCCCCCCc-EEEE---EeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----chhhccCeEEEeC
Q 028777 85 TTPPISSND-LLIA---SAGPGGFSTVDAICSRARSYGARVLLLTAQPESG-----SSVKHASVVAYVP 144 (204)
Q Consensus 85 ~~~~~~~~D-lvI~---iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~-----~l~~~ad~~l~~~ 144 (204)
....++++. ++++ -...|...++-++.+.|+++|+.+|. ++.... |+.-.+|+++...
T Consensus 143 l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIv--D~a~a~~~~~~~l~~g~Di~v~S~ 209 (403)
T PRK07503 143 LKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVV--DNTYCTPYLQRPLELGADLVVHSA 209 (403)
T ss_pred HHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEE--ECCCcccccCCchhhCCCEEEccc
Confidence 112233443 4443 24457777888889999999986553 333220 4444577666543
No 290
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=52.76 E-value=1.1e+02 Score=23.83 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=44.7
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHH---------HHHHHHHHHHcCCeEE
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFST---------VDAICSRARSYGARVL 122 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~---------~~~~~~~ak~~g~~vI 122 (204)
|.+.-.|.... ..+...|...|..+..+.+. ..+.+-|.+|+ +-+|...+ +.+.++.+.+.|.+++
T Consensus 2 i~~~d~~~~~~--~~i~~~l~~~G~~v~~~~~~--~~l~~~d~iii-pG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvl 76 (205)
T PRK13141 2 IAIIDYGMGNL--RSVEKALERLGAEAVITSDP--EEILAADGVIL-PGVGAFPDAMANLRERGLDEVIKEAVASGKPLL 76 (205)
T ss_pred EEEEEcCCchH--HHHHHHHHHCCCeEEEECCH--HHhccCCEEEE-CCCCchHHHHHHHHHcChHHHHHHHHHCCCcEE
Confidence 44444443322 44566677788888876541 22344566655 54444332 3455566667899999
Q ss_pred EEecCCCCcchhh
Q 028777 123 LLTAQPESGSSVK 135 (204)
Q Consensus 123 ~iT~~~~s~~l~~ 135 (204)
+|+....- +++
T Consensus 77 GIC~G~Ql--l~~ 87 (205)
T PRK13141 77 GICLGMQL--LFE 87 (205)
T ss_pred EECHHHHH--hhh
Confidence 99965443 444
No 291
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=52.67 E-value=95 Score=23.13 Aligned_cols=80 Identities=18% Similarity=0.129 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEec-chhHHHHHHHHHHHhhcCCeEEEecC------------CCCCCCCCCcEEEEEeCCC
Q 028777 36 DIMVAELTNTATQKGSVFLYGV-GREGLMLKALCMRLAHLGISTHLVFD------------MTTPPISSNDLLIASAGPG 102 (204)
Q Consensus 36 ~~~l~~~~~~i~~a~~I~i~G~-G~S~~~a~~~~~~l~~lg~~~~~~~d------------~~~~~~~~~DlvI~iS~sG 102 (204)
.+.++++.+.+.+++.|+++.. |-+..-...+...|...|....+... ......-.|...++||..
T Consensus 6 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~~~~l~~~l~G~~al~f~~~- 84 (157)
T cd05797 6 EEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTGFEDLDDLLKGPTAIAFSEE- 84 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhHhhCcCCEEEEEeCC-
Confidence 3578899999999999999998 55888888899999988776665532 111123367788888864
Q ss_pred CCHHHHHHHHHHHH
Q 028777 103 GFSTVDAICSRARS 116 (204)
Q Consensus 103 ~t~~~~~~~~~ak~ 116 (204)
+..++.+.+....+
T Consensus 85 d~~~~~k~l~~f~k 98 (157)
T cd05797 85 DPVAAAKVLKDFAK 98 (157)
T ss_pred ChHHHHHHHHHHHH
Confidence 45556666655433
No 292
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=52.54 E-value=41 Score=24.24 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHHHHhhcCCeEEEec--CCC--CCCCCCCcE-EEEEeCCC
Q 028777 57 VGREGLMLKALCMRLAHLGISTHLVF--DMT--TPPISSNDL-LIASAGPG 102 (204)
Q Consensus 57 ~G~S~~~a~~~~~~l~~lg~~~~~~~--d~~--~~~~~~~Dl-vI~iS~sG 102 (204)
.|.+..+|+.++..|..-|+++..++ +.. ...+...++ +++.|..|
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~sT~~ 57 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDSPSDLSEYDLLIFGVSTYG 57 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHHHHHHCTTSEEEEEEEEET
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhhhhhhhhhhhhceeeEeecccC
Confidence 48899999999999999998766654 322 123444444 44444333
No 293
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=52.33 E-value=1e+02 Score=23.42 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEec-chhHHHHHHHHHHHhhcCCeEEEecC-----------C-CCCCCCCCcEEEEEeCCC
Q 028777 36 DIMVAELTNTATQKGSVFLYGV-GREGLMLKALCMRLAHLGISTHLVFD-----------M-TTPPISSNDLLIASAGPG 102 (204)
Q Consensus 36 ~~~l~~~~~~i~~a~~I~i~G~-G~S~~~a~~~~~~l~~lg~~~~~~~d-----------~-~~~~~~~~DlvI~iS~sG 102 (204)
.+.++++.+.+.+++.|+++.. |-+..-...+...|...|....+... + .....-.|...++||. .
T Consensus 7 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~~~~l~~~l~G~~al~fs~-~ 85 (172)
T PRK00099 7 KEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGTGFEGLDDLLKGPTAIAFSY-E 85 (172)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhhhhCcCCeEEEEeC-C
Confidence 3578899999999999999998 55777888889999887766655433 0 1122336778888886 4
Q ss_pred CCHHHHHHHHH-HHHc
Q 028777 103 GFSTVDAICSR-ARSY 117 (204)
Q Consensus 103 ~t~~~~~~~~~-ak~~ 117 (204)
+..++.+.+.. +|++
T Consensus 86 d~~~~~k~l~~f~K~~ 101 (172)
T PRK00099 86 DPVAAAKVLKDFAKDN 101 (172)
T ss_pred ChHHHHHHHHHHHhhC
Confidence 55556666654 4443
No 294
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=52.29 E-value=1e+02 Score=23.45 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=45.8
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEE
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVL 122 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI 122 (204)
-.|+|.-+-+-..+.....|..+|++.. +-++|.......+.+.++.|+++|.++|
T Consensus 6 ~IIMGS~SD~~~mk~Aa~~L~~fgi~ye---------------~~VvSAHRTPe~m~~ya~~a~~~g~~vi 61 (162)
T COG0041 6 GIIMGSKSDWDTMKKAAEILEEFGVPYE---------------VRVVSAHRTPEKMFEYAEEAEERGVKVI 61 (162)
T ss_pred EEEecCcchHHHHHHHHHHHHHcCCCeE---------------EEEEeccCCHHHHHHHHHHHHHCCCeEE
Confidence 4688888888899999999999987554 3467888888888999999999999765
No 295
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=52.23 E-value=62 Score=24.36 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC
Q 028777 35 LDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD 83 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d 83 (204)
+...+..+++.+.....-.++..|.-..++..+-.+|..-|...+..+|
T Consensus 26 Np~Vf~~~~~~~~~~~~pLVCt~G~p~~A~~~LL~~L~~~g~~l~y~GD 74 (152)
T PF09664_consen 26 NPAVFSALADELGASCPPLVCTSGQPSAAARRLLDRLAAAGARLYYSGD 74 (152)
T ss_pred cHHHHHHHHHhcCCCCCeEEEcCCcHHHHHHHHHHHHHhCCCEEEEecC
Confidence 3558889999988888889999999998999999999888988888887
No 296
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=52.17 E-value=14 Score=26.22 Aligned_cols=32 Identities=6% Similarity=0.136 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHc-CCeEEEEecCCC
Q 028777 93 DLLIASAGPGGFSTVDAICSRARSY-GARVLLLTAQPE 129 (204)
Q Consensus 93 DlvI~iS~sG~t~~~~~~~~~ak~~-g~~vI~iT~~~~ 129 (204)
..+|++|.||++...+ +|-+ .++++++|.++.
T Consensus 18 k~Ivv~T~sG~ta~~i-----sk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 18 KAIVVFTESGRTARLI-----SKYRPKVPIIAVTPNES 50 (117)
T ss_dssp SEEEEE-SSSHHHHHH-----HHT-TSSEEEEEESSHH
T ss_pred CEEEEECCCchHHHHH-----HhhCCCCeEEEEcCcHH
Confidence 4789999999986655 3332 699999997754
No 297
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=52.10 E-value=1.4e+02 Score=25.72 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=40.2
Q ss_pred hcCCeEEEec--C--CCCCCCCCCcEEEEEe----CCCCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccC
Q 028777 73 HLGISTHLVF--D--MTTPPISSNDLLIASA----GPGGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHAS 138 (204)
Q Consensus 73 ~lg~~~~~~~--d--~~~~~~~~~DlvI~iS----~sG~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad 138 (204)
+.|..+..+. | .....++++.-+|++. ..|.-.++-++++.|+++|+.+| .++. .. |+.--+|
T Consensus 108 ~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vi--vD~a~~~~~~~~-~l~~g~D 184 (378)
T TIGR01329 108 RSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVV--VDNTMMSPLLCN-PLELGAD 184 (378)
T ss_pred HcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEE--EECCCcccccCC-hhhcCCc
Confidence 3455555543 1 1122344554444433 24555678888999999998665 2332 23 5544688
Q ss_pred eEEEeCCc
Q 028777 139 VVAYVPAQ 146 (204)
Q Consensus 139 ~~l~~~~~ 146 (204)
+++...++
T Consensus 185 i~v~S~tK 192 (378)
T TIGR01329 185 IVYHSATK 192 (378)
T ss_pred EEEEecce
Confidence 87776553
No 298
>PRK05568 flavodoxin; Provisional
Probab=52.03 E-value=40 Score=24.38 Aligned_cols=50 Identities=30% Similarity=0.302 Sum_probs=33.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHH-HHHcCCeEEEEecCCCCcchhh--ccCeEEEe
Q 028777 92 NDLLIASAGPGGFSTVDAICSR-ARSYGARVLLLTAQPESGSSVK--HASVVAYV 143 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~-ak~~g~~vI~iT~~~~s~~l~~--~ad~~l~~ 143 (204)
+-+++.+|.+|+|+.+.+.+.. +++.|+.+-.+ +..+. +..+ -+|..+..
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~-~~~~~-~~~~~~~~d~iilg 55 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLL-NVSEA-SVDDVKGADVVALG 55 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEE-ECCCC-CHHHHHhCCEEEEE
Confidence 4588999999999999887744 67788765554 34444 4333 35655544
No 299
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=51.86 E-value=79 Score=27.45 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=25.5
Q ss_pred CCCcEEEEEeCC-CCCH-HHHHHHHHHHHcCCeEEEEecC
Q 028777 90 SSNDLLIASAGP-GGFS-TVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 90 ~~~DlvI~iS~s-G~t~-~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.+-|++|++... .++. -....++.++++|+++|.|...
T Consensus 151 ~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~ 190 (414)
T cd02772 151 SELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPA 190 (414)
T ss_pred HhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCc
Confidence 446777777443 3333 3445567889999999988854
No 300
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=51.81 E-value=1.1e+02 Score=25.36 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=42.5
Q ss_pred EEecchhHHHHHHHHHHHh-hcC-CeEEEecC-----CCCCCCCCCcEEEEEeCCCCCH---HHHHHHHHHHHcCCeEE-
Q 028777 54 LYGVGREGLMLKALCMRLA-HLG-ISTHLVFD-----MTTPPISSNDLLIASAGPGGFS---TVDAICSRARSYGARVL- 122 (204)
Q Consensus 54 i~G~G~S~~~a~~~~~~l~-~lg-~~~~~~~d-----~~~~~~~~~DlvI~iS~sG~t~---~~~~~~~~ak~~g~~vI- 122 (204)
+++...+..+|+.++..|. .+| .....+.| .....+..+|++|+-|...-+. |++-+++.+|+.|++-|
T Consensus 2 i~~~~~~~~la~~ia~~l~~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga~~i~ 81 (285)
T PRK00934 2 IIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGAKSIT 81 (285)
T ss_pred eEeCCCCHHHHHHHHHHHCCceEeeEEEECCCCCEEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCCeEE
Confidence 3454456678888888774 222 22333444 2234556678888777655444 45556678899999544
Q ss_pred EEe
Q 028777 123 LLT 125 (204)
Q Consensus 123 ~iT 125 (204)
++.
T Consensus 82 ~v~ 84 (285)
T PRK00934 82 LVI 84 (285)
T ss_pred EEe
Confidence 443
No 301
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=51.71 E-value=37 Score=28.87 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 105 STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 105 ~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
.-...+++.|++.|.+++.+..++++ |-.+.||..+..
T Consensus 9 ql~~~l~~aa~~lG~~v~~~d~~~~~-p~~~~ad~~~~~ 46 (352)
T TIGR01161 9 QLGRMLALAARPLGIKVHVLDPDANS-PAVQVADHVVLA 46 (352)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCC-ChhHhCceeEeC
Confidence 44456778899999999999999999 999999987743
No 302
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=51.65 E-value=37 Score=31.47 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=36.4
Q ss_pred cEEEEec--chhHHHHHHHHHHHhhcCCeEEEec--CCCCCCC-CCCcEEEEEeCCCC
Q 028777 51 SVFLYGV--GREGLMLKALCMRLAHLGISTHLVF--DMTTPPI-SSNDLLIASAGPGG 103 (204)
Q Consensus 51 ~I~i~G~--G~S~~~a~~~~~~l~~lg~~~~~~~--d~~~~~~-~~~DlvI~iS~sG~ 103 (204)
-.++||+ |.+..+|+.++..+...|+.+.+.. |.....+ ..+.++|+.|..|+
T Consensus 61 i~IlygSqTGnae~~A~~l~~~l~~~g~~~~v~~~~d~~~~~l~~~~~li~v~ST~Ge 118 (597)
T TIGR01931 61 VTILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKFKQLKKERLLLLVISTQGE 118 (597)
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhCCCccEEechHHCCHhhcccCceEEEEeCCCCC
Confidence 3478887 8899999999999999998877653 2333334 34455666666554
No 303
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=51.55 E-value=1.6e+02 Score=25.62 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC----C
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD----M 84 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d----~ 84 (204)
++...+.+++....+.++..+.+++.|...+.+-.. ...+...|+.+..++. .
T Consensus 51 ~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~ 130 (388)
T PRK08861 51 GNPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAA 130 (388)
T ss_pred CCchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence 444556666666666677777777666544322111 1112234555544431 1
Q ss_pred CCCCCCCCcEEEEEeC----CCCCHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 85 TTPPISSNDLLIASAG----PGGFSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 85 ~~~~~~~~DlvI~iS~----sG~t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
....++++.-+|+++. +|.-.++-++.+.|+++|+.+| .++. .. |+.--+|+++...+
T Consensus 131 l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vI--vDea~~~~~~~~-pl~~GaDivv~S~t 198 (388)
T PRK08861 131 LDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVA--VDNTFLTPVLQK-PLELGADFVIHSTT 198 (388)
T ss_pred HHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEE--EECCccccccCC-CcccCCCEEEeecc
Confidence 1223344444555533 3455566677888999987554 3332 23 55555888776654
No 304
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=51.55 E-value=84 Score=22.25 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=45.2
Q ss_pred CcEEEEecchh-HHHHHHHHHHHhhcCCeEEEecC---------CCCC--CC-CCCcEEEEEeCCCCCHHHHHHHHHHHH
Q 028777 50 GSVFLYGVGRE-GLMLKALCMRLAHLGISTHLVFD---------MTTP--PI-SSNDLLIASAGPGGFSTVDAICSRARS 116 (204)
Q Consensus 50 ~~I~i~G~G~S-~~~a~~~~~~l~~lg~~~~~~~d---------~~~~--~~-~~~DlvI~iS~sG~t~~~~~~~~~ak~ 116 (204)
|+|.++|.-.. ...+......|...|.+++.++. .+.. .. .+=|+++++... ..+.++++.+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~---~~~~~~v~~~~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP---DKVPEIVDEAAA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H---HHHHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH---HHHHHHHHHHHH
Confidence 46778886542 45677777778888989998875 1111 12 344888888765 445666677888
Q ss_pred cCCeEEEEecCCCC
Q 028777 117 YGARVLLLTAQPES 130 (204)
Q Consensus 117 ~g~~vI~iT~~~~s 130 (204)
.|++.+.+.....+
T Consensus 78 ~g~~~v~~~~g~~~ 91 (116)
T PF13380_consen 78 LGVKAVWLQPGAES 91 (116)
T ss_dssp HT-SEEEE-TTS--
T ss_pred cCCCEEEEEcchHH
Confidence 89988877766444
No 305
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.36 E-value=95 Score=27.61 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=22.0
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEe
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLV 81 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~ 81 (204)
+.++|.++|.|.++..+ +..|...|..+..+
T Consensus 15 ~~~~v~viG~G~~G~~~---A~~L~~~G~~V~~~ 45 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAA---ADALLELGARVTVV 45 (480)
T ss_pred CCCEEEEECCCHHHHHH---HHHHHHCCCEEEEE
Confidence 46789999999988753 34455667766654
No 306
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=51.10 E-value=1.2e+02 Score=23.81 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=19.9
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+.++|.++|.|. +|......|..-|..+.+++
T Consensus 9 ~~k~vLVIGgG~---va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 9 SNKRVVIVGGGK---VAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHHCCCeEEEEc
Confidence 568899999876 33334444555566666554
No 307
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=50.83 E-value=1.6e+02 Score=25.20 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcC-------------------------CeEEEec--C-
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLG-------------------------ISTHLVF--D- 83 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg-------------------------~~~~~~~--d- 83 (204)
++...+.+++....+.+++..++++.|.+.+.+- ..+..-| ..+..+. |
T Consensus 50 ~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~---~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~ 126 (366)
T PRK08247 50 GNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLV---MSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASL 126 (366)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH---HHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCH
Confidence 4456667777777777777777777776543321 1232333 3333222 1
Q ss_pred -CCCCCCCCCcEEEEE-eCC---CCCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCCc
Q 028777 84 -MTTPPISSNDLLIAS-AGP---GGFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 84 -~~~~~~~~~DlvI~i-S~s---G~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~~ 146 (204)
.....++++.-+|++ +-+ |.-.++-++++.|+++|+.+| .++.. . |+...+|+++...++
T Consensus 127 ~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lI--vD~t~~~~~~~~-p~~~g~di~i~S~sK 197 (366)
T PRK08247 127 KAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLI--VDNTFYTPVLQR-PLEEGADIVIHSATK 197 (366)
T ss_pred HHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEE--EECCCccccccC-chhcCCcEEEeecce
Confidence 111223344334443 322 344678888999999997554 45544 3 444457877766543
No 308
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=50.82 E-value=24 Score=27.36 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=37.1
Q ss_pred cEEEEEeCCCC---CHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCe
Q 028777 93 DLLIASAGPGG---FSTVDAICSRARSYGARVLLLTAQPESGSSVKHASV 139 (204)
Q Consensus 93 DlvI~iS~sG~---t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~ 139 (204)
.-|-++...|. ...+-++++.|++.|...|.|..+.+. |++++.|+
T Consensus 20 ~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLV~v~~~~~P-PVckI~dy 68 (177)
T PRK00028 20 REVRLIGDDGEQLGIVSTREALELAEEAGLDLVEISPNAKP-PVCKIMDY 68 (177)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCC-CEEEEEeH
Confidence 34555565665 456778999999999999999999888 99998886
No 309
>PRK12359 flavodoxin FldB; Provisional
Probab=50.75 E-value=1e+02 Score=23.64 Aligned_cols=20 Identities=0% Similarity=-0.086 Sum_probs=14.5
Q ss_pred EEEecchhHHHHHHHHHHHh
Q 028777 53 FLYGVGREGLMLKALCMRLA 72 (204)
Q Consensus 53 ~i~G~G~S~~~a~~~~~~l~ 72 (204)
|.-.+|.+..+|+.++.++.
T Consensus 7 Y~S~TGNTe~vAe~I~~~lg 26 (172)
T PRK12359 7 YGSSTCYTEMAAEKIRDIIG 26 (172)
T ss_pred EECCCCHHHHHHHHHHHHhC
Confidence 33444779999999888773
No 310
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=50.68 E-value=1.3e+02 Score=23.97 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=61.1
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEe--cC-----------C----CC------CC----CCCC----cEEEEEe
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLV--FD-----------M----TT------PP----ISSN----DLLIASA 99 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~--~d-----------~----~~------~~----~~~~----DlvI~iS 99 (204)
-++++|.|..+--+-..++.|...|..+.++ .+ . .. .. ..+- |.++.++
T Consensus 52 v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~~~~~~~dvIVDalfG~G 131 (203)
T COG0062 52 VLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELEDEPESADVIVDALFGTG 131 (203)
T ss_pred EEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccccccccCCEEEEeceecC
Confidence 3478899998877777788888777655543 22 0 00 00 1122 6678999
Q ss_pred CCCCCHHH-HHHHHHHHHcCCeEEEEecCCCC----c---chhhccCeEEEeCCc
Q 028777 100 GPGGFSTV-DAICSRARSYGARVLLLTAQPES----G---SSVKHASVVAYVPAQ 146 (204)
Q Consensus 100 ~sG~t~~~-~~~~~~ak~~g~~vI~iT~~~~s----~---~l~~~ad~~l~~~~~ 146 (204)
.+|.-++. -.+++.+.+.+.++|++==..+- | ..+=.||+++.....
T Consensus 132 ~~g~lrep~a~~Ie~iN~~~~pivAVDiPSGl~~dtG~~~~~av~Ad~TVTf~~~ 186 (203)
T COG0062 132 LSGPLREPFASLIEAINASGKPIVAVDIPSGLDADTGEVLGAAVKADLTVTFGAL 186 (203)
T ss_pred CCCCCccHHHHHHHHHHhcCCceEEEeCCCCcCCCCCcccCcceeccEEEEecCc
Confidence 99976666 66778888899999988422111 0 124458888877553
No 311
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=50.68 E-value=1.1e+02 Score=23.58 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC--CCCCCCCCCcEEEEEeCCC---CCHHHHHHHHHHHHcCCeEEE
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD--MTTPPISSNDLLIASAGPG---GFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d--~~~~~~~~~DlvI~iS~sG---~t~~~~~~~~~ak~~g~~vI~ 123 (204)
+.||.++-.+.|..-- +...|...|..+..+.. .....+..-|.+|+.--.| ....+.++++. -+.+.|+++
T Consensus 1 ~~~iliid~~dsf~~~--i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~~~~~PiLG 77 (190)
T PRK06895 1 ATKLLIINNHDSFTFN--LVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVPRAYPQLFAMLER-YHQHKSILG 77 (190)
T ss_pred CcEEEEEeCCCchHHH--HHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCChHHhhHHHHHHHH-hcCCCCEEE
Confidence 4678888888876433 56667777887776552 1122333446544443344 22344445544 346889999
Q ss_pred EecCCC
Q 028777 124 LTAQPE 129 (204)
Q Consensus 124 iT~~~~ 129 (204)
|+-...
T Consensus 78 IClG~Q 83 (190)
T PRK06895 78 VCLGHQ 83 (190)
T ss_pred EcHHHH
Confidence 985443
No 312
>PRK09004 FMN-binding protein MioC; Provisional
Probab=50.47 E-value=41 Score=24.92 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=24.3
Q ss_pred cEEEEEeCCCCCHHHHHHH-HHHHHcCCeEEEE
Q 028777 93 DLLIASAGPGGFSTVDAIC-SRARSYGARVLLL 124 (204)
Q Consensus 93 DlvI~iS~sG~t~~~~~~~-~~ak~~g~~vI~i 124 (204)
=+++.-|.+|+++.+-+.+ +.+++.|..+-.+
T Consensus 4 i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~ 36 (146)
T PRK09004 4 ITLISGSTLGGAEYVADHLAEKLEEAGFSTETL 36 (146)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHHcCCceEEe
Confidence 3577799999999997666 5677788776544
No 313
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=50.45 E-value=1.1e+02 Score=23.28 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=43.7
Q ss_pred EEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Q 028777 53 FLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 53 ~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 123 (204)
.++|.-+-...++.....|..+|+++ -+=+.|......++.+.++.++++|++++.
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~---------------dv~V~SaHRtp~~~~~~~~~a~~~g~~viI 58 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPY---------------ELRVVSAHRTPELMLEYAKEAEERGIKVII 58 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCe---------------EEEEECcccCHHHHHHHHHHHHHCCCeEEE
Confidence 56776666789999999999999762 234677778888899999999999886653
No 314
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=50.32 E-value=1.6e+02 Score=25.13 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEecC----CC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVFD----MT 85 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~d----~~ 85 (204)
....+.+++....+..+....+++.|.+...+-.. ...+...|..+..+.- ..
T Consensus 39 ~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 118 (369)
T cd00614 39 NPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEAL 118 (369)
T ss_pred ChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHH
Confidence 34455666666666667778888877644322111 0112234544444321 11
Q ss_pred CCCCCCCcEEEEE----eCCCCCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIAS----AGPGGFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~i----S~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~ 145 (204)
...++++.-+|++ +..|...++-++++.|+++|+.+|. ++.. . |+.--+|+++...+
T Consensus 119 ~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~liv--D~t~~~~~~~~-~~~~g~Divv~S~t 185 (369)
T cd00614 119 EAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVV--DNTFATPYLQR-PLELGADIVVHSAT 185 (369)
T ss_pred HHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE--ECCCcchhcCC-hhhhCCcEEEeccc
Confidence 1223344334443 2346667788888999999986653 4432 3 44445787765544
No 315
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=50.20 E-value=33 Score=28.22 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 103 GFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 103 ~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
...++.++++..++.|.+|+.+|..-+ ++.+++|.++.+..
T Consensus 174 ~~~~i~~lL~~l~~eg~tIl~vtHDL~--~v~~~~D~vi~Ln~ 214 (254)
T COG1121 174 GQKEIYDLLKELRQEGKTVLMVTHDLG--LVMAYFDRVICLNR 214 (254)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCcH--HhHhhCCEEEEEcC
Confidence 347789999999999988888886654 69999999988843
No 316
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=50.19 E-value=43 Score=30.35 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=41.9
Q ss_pred EEEEec--chhHHHHHHHHHHHhhcCCeEEEec--CC-CCCCCCCCcEEEEEeCCCCCHHH
Q 028777 52 VFLYGV--GREGLMLKALCMRLAHLGISTHLVF--DM-TTPPISSNDLLIASAGPGGFSTV 107 (204)
Q Consensus 52 I~i~G~--G~S~~~a~~~~~~l~~lg~~~~~~~--d~-~~~~~~~~DlvI~iS~sG~t~~~ 107 (204)
..+||. |...-+|+-+.+.+.+.|..+.+.. +. ....+.+.-|+|+.|.+|.-.+.
T Consensus 4 ~ILYGSqTGtA~dvAe~l~Re~~r~~~~~~V~s~Deyd~~~ll~~~~vvFVcSTTGqGe~P 64 (574)
T KOG1159|consen 4 LILYGSQTGTAQDVAESLGREAHRRGLQCLVMSMDEYDVEKLLDERLVVFVCSTTGQGEEP 64 (574)
T ss_pred EEEeecCcccHHHHHHHHHHHHHhccCCceEeeccccCHhHhccCceEEEEEecCCCCCCC
Confidence 568887 7788899999999998888777654 33 23456778899999999864443
No 317
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=50.05 E-value=1.9e+02 Score=25.97 Aligned_cols=101 Identities=16% Similarity=0.253 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcEEEEecchh-HH-HHHHHHHHHhhcCCeEEEecC--CCCC-------CCCCCcEEEEEeC
Q 028777 32 PPPLDIMVAELTNTATQKGSVFLYGVGRE-GL-MLKALCMRLAHLGISTHLVFD--MTTP-------PISSNDLLIASAG 100 (204)
Q Consensus 32 ~~~~~~~l~~~~~~i~~a~~I~i~G~G~S-~~-~a~~~~~~l~~lg~~~~~~~d--~~~~-------~~~~~DlvI~iS~ 100 (204)
.+...+.++.+.+.+.+.++|.|+|-... ++ .+-.+...|.++|.++...-. .... .....|++|..-.
T Consensus 19 l~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~liItvD~ 98 (491)
T COG0608 19 LKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADLIITVDN 98 (491)
T ss_pred HhhHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCEEEEECC
Confidence 44566677778888888999999998663 22 333455667788877665432 1111 2234467777766
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccC
Q 028777 101 PGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHAS 138 (204)
Q Consensus 101 sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad 138 (204)
.-...+ .++.++++|.. +.||+.+ . |-....+
T Consensus 99 G~~~~~---~i~~~~~~g~~-vIVtDHH-~-~~~~~p~ 130 (491)
T COG0608 99 GSGSLE---EIARAKELGID-VIVTDHH-P-PGEELPD 130 (491)
T ss_pred CcccHH---HHHHHHhCCCc-EEEECCC-C-CCCCCCC
Confidence 555444 44556677886 5577777 5 5555544
No 318
>CHL00199 infC translation initiation factor 3; Provisional
Probab=49.59 E-value=27 Score=27.23 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=37.0
Q ss_pred EEEEEeCCCC---CHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCe
Q 028777 94 LLIASAGPGG---FSTVDAICSRARSYGARVLLLTAQPESGSSVKHASV 139 (204)
Q Consensus 94 lvI~iS~sG~---t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~ 139 (204)
-|-++...|+ --.+-++++.|++.|...|-|..+... |++++.|+
T Consensus 26 ~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDLVeVs~~a~P-PVCKImdy 73 (182)
T CHL00199 26 KVRVIDDSGEQLGIFTSEQAIQLAANQGLDLVLVSEKSDP-PVCRIIDY 73 (182)
T ss_pred EEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCC-CeEEEeeh
Confidence 4555566666 456678899999999999999999999 99999886
No 319
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=49.55 E-value=86 Score=24.75 Aligned_cols=46 Identities=13% Similarity=-0.017 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD 83 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d 83 (204)
.++++.+.+.+++-+.++|+-.+-..|..+......-|.+++.++.
T Consensus 145 ~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~ 190 (206)
T cd01410 145 NWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNL 190 (206)
T ss_pred HHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECC
Confidence 5888889999999999999877655566566666677888888774
No 320
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=49.50 E-value=75 Score=21.07 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=39.8
Q ss_pred EEEEecc--hhHHHHHHHHHHHhhcCCeEEEec-CCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHc--CCeEEEEec
Q 028777 52 VFLYGVG--REGLMLKALCMRLAHLGISTHLVF-DMTTPPISSNDLLIASAGPGGFSTVDAICSRARSY--GARVLLLTA 126 (204)
Q Consensus 52 I~i~G~G--~S~~~a~~~~~~l~~lg~~~~~~~-d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~--g~~vI~iT~ 126 (204)
+.++|.| .|.+++.-+...|...|+...... +..... .+.|++|. . .++ .+.++.. ++++|.+.+
T Consensus 4 lvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~~-~~~Dliit--t----~~l---~~~~~~~~~~~~vi~v~~ 73 (87)
T cd05567 4 VFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDELP-SDADLVVT--H----ASL---TDRAKKKAPQAQHLSVDN 73 (87)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhCC-CCCCEEEE--C----hHH---HHHHHhcCCCCeEEEEec
Confidence 4555554 467778889999988887665543 221112 55565553 2 222 2333322 689999987
Q ss_pred CCC
Q 028777 127 QPE 129 (204)
Q Consensus 127 ~~~ 129 (204)
.-+
T Consensus 74 ~l~ 76 (87)
T cd05567 74 FLN 76 (87)
T ss_pred cCC
Confidence 644
No 321
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=49.42 E-value=67 Score=29.76 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=35.5
Q ss_pred CCCcEEEEEeCC-CCC----------HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccC-eEEEeCC
Q 028777 90 SSNDLLIASAGP-GGF----------STVDAICSRARSYGARVLLLTAQPESGSSVKHAS-VVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS~s-G~t----------~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad-~~l~~~~ 145 (204)
..-|++|++... .++ ......+..+|++|+++|.|-.. .+ +.++.+| ..|.+..
T Consensus 169 ~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr-~t-~tA~~add~~l~irP 234 (609)
T cd02769 169 EHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPL-RD-DTAAELGAEWIAIRP 234 (609)
T ss_pred hhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCC-CC-cchhhhcCcEeccCC
Confidence 345777777654 222 12345667789999999998865 44 6788776 6776643
No 322
>PRK13018 cell division protein FtsZ; Provisional
Probab=49.16 E-value=1.6e+02 Score=25.85 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=38.3
Q ss_pred cEEEEEeCCCCC--HHHHHHHHHHHHcCCeEEEEecCCCCc--------------chhhccCeEEEeCCcc
Q 028777 93 DLLIASAGPGGF--STVDAICSRARSYGARVLLLTAQPESG--------------SSVKHASVVAYVPAQT 147 (204)
Q Consensus 93 DlvI~iS~sG~t--~~~~~~~~~ak~~g~~vI~iT~~~~s~--------------~l~~~ad~~l~~~~~~ 147 (204)
-++|+.+..|.| -..--+++.+++.|+.++++...|.+. .|.+.+|.++.++.+.
T Consensus 115 ~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~ 185 (378)
T PRK13018 115 LVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNR 185 (378)
T ss_pred EEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHH
Confidence 355556667666 334556688999999999876666541 4568899999997654
No 323
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.09 E-value=1.5e+02 Score=24.30 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=44.2
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
++.+++.-.+...++.+..+|...|+.+....+.. ....+-|++|++- |. -.++.+++.+ ++|+++|-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~d~vi~iG--GD-GT~L~a~~~~---~~Pilgin~G 71 (256)
T PRK14075 2 KLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-SGKVTADLIIVVG--GD-GTVLKAAKKV---GTPLVGFKAG 71 (256)
T ss_pred EEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-cccCCCCEEEEEC--Cc-HHHHHHHHHc---CCCEEEEeCC
Confidence 35666777788888889999988887666543321 1222336665553 33 4456665555 8999988754
No 324
>PLN02509 cystathionine beta-lyase
Probab=48.91 E-value=1.6e+02 Score=26.50 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHH----------------------HHHHHhhcCCeEEEecC----CCCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKA----------------------LCMRLAHLGISTHLVFD----MTTP 87 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~----------------------~~~~l~~lg~~~~~~~d----~~~~ 87 (204)
...+.+++....+..+...+++..|.+.+.+-. +...+...|..+..+.. ....
T Consensus 133 pt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ 212 (464)
T PLN02509 133 PTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAA 212 (464)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHH
Confidence 345566666666666666666666654321110 01112234555544321 1123
Q ss_pred CCCCCcEEEEE----eCCCCCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCC
Q 028777 88 PISSNDLLIAS----AGPGGFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~~DlvI~i----S~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~ 145 (204)
.++++.-+|++ +..|.-.++-++++.|+++|+.+|. ++.. . |+...+|+++...+
T Consensus 213 ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIV--D~A~a~~~~~~-pl~~gaDivv~S~t 277 (464)
T PLN02509 213 AIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLV--DNSIMSPVLSR-PLELGADIVMHSAT 277 (464)
T ss_pred hCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEE--ECCccccccCC-hhhcCCcEEEecCc
Confidence 34555444432 3347778888899999999987653 3332 2 45556888876654
No 325
>PRK10537 voltage-gated potassium channel; Provisional
Probab=48.72 E-value=92 Score=27.32 Aligned_cols=77 Identities=8% Similarity=0.100 Sum_probs=42.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-----------------------CCCCCCCCCcEEEEEeCCCCCH
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-----------------------MTTPPISSNDLLIASAGPGGFS 105 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-----------------------~~~~~~~~~DlvI~iS~sG~t~ 105 (204)
.+++.++|.|.- ++.+...|..-|.++..+.+ .....+.+-+.+|+ .+++..
T Consensus 240 k~HvII~G~g~l---g~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~--~t~dD~ 314 (393)
T PRK10537 240 KDHFIICGHSPL---AINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILA--LRDNDA 314 (393)
T ss_pred CCeEEEECCChH---HHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEE--cCCChH
Confidence 578999999984 33344455555666655432 01123333344443 334445
Q ss_pred HHHHHHHHHHHcC--CeEEEEecCCCC
Q 028777 106 TVDAICSRARSYG--ARVLLLTAQPES 130 (204)
Q Consensus 106 ~~~~~~~~ak~~g--~~vI~iT~~~~s 130 (204)
+-..++..+|+.+ +++|+.+.++++
T Consensus 315 ~Nl~ivL~ar~l~p~~kIIa~v~~~~~ 341 (393)
T PRK10537 315 DNAFVVLAAKEMSSDVKTVAAVNDSKN 341 (393)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCHHH
Confidence 5555666677654 567777766544
No 326
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=48.64 E-value=60 Score=22.81 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=27.4
Q ss_pred CCcEEEEEeCCCCC---HHHHHHHHHHHHcCCeEEEEe
Q 028777 91 SNDLLIASAGPGGF---STVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 91 ~~DlvI~iS~sG~t---~~~~~~~~~ak~~g~~vI~iT 125 (204)
+.|++++-..+.=. .+....++.++++|++++.+.
T Consensus 54 ~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~gi~l~~~~ 91 (126)
T cd03768 54 EGDTLVVTKLDRLGRSTKDLLEIVEELREKGVSLRSLT 91 (126)
T ss_pred CCCEEEEEEcchhcCcHHHHHHHHHHHHHCCCEEEEec
Confidence 67899998877644 455667778999999999984
No 327
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=48.40 E-value=48 Score=29.21 Aligned_cols=46 Identities=20% Similarity=0.029 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCc-EEEEecchhHHHHHHHHHHHhhcCCeEEE
Q 028777 35 LDIMVAELTNTATQKGS-VFLYGVGREGLMLKALCMRLAHLGISTHL 80 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~a~~~~~~l~~lg~~~~~ 80 (204)
..+.++++++.|.+|+| +++.|.|......+.+.....++|.++..
T Consensus 197 ~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~t 243 (432)
T TIGR00173 197 DPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLA 243 (432)
T ss_pred ChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 34579999999999876 66778776543444444444578888775
No 328
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.28 E-value=1.1e+02 Score=22.65 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=55.3
Q ss_pred HHHHHHHHHhc--CCcEEEEec-chhHHHHHHHHHHHhhcCCeEEEecC---------------C---CCCCCCCCcEEE
Q 028777 38 MVAELTNTATQ--KGSVFLYGV-GREGLMLKALCMRLAHLGISTHLVFD---------------M---TTPPISSNDLLI 96 (204)
Q Consensus 38 ~l~~~~~~i~~--a~~I~i~G~-G~S~~~a~~~~~~l~~lg~~~~~~~d---------------~---~~~~~~~~DlvI 96 (204)
.+..+-+.+.. ..+|.+.|+ |.-.+-|+.|.+.++ .+..+++.| + ....+++-|+++
T Consensus 13 ~L~~Fr~~V~d~~~eki~fvG~~GvCtPFAeL~~favR--Dke~~fipd~d~ek~rkl~~~d~G~ql~e~e~~n~aDvvV 90 (154)
T COG4090 13 FLTGFRELVLDLTEEKIVFVGCPGVCTPFAELLAFAVR--DKEQYFIPDLDFEKARKLELTDHGYQLGEREELNSADVVV 90 (154)
T ss_pred HHHHHHHHHhccCcceEEEecCCcccccHHHHHHHHhh--chheeecCCcChhHhheeeeeccceecCCccccccccEEE
Confidence 55556666665 889999998 778889999888777 345666544 0 112445567777
Q ss_pred EE---eCCCCCHHHHHHHHHHHHcCCe-EEEEecC
Q 028777 97 AS---AGPGGFSTVDAICSRARSYGAR-VLLLTAQ 127 (204)
Q Consensus 97 ~i---S~sG~t~~~~~~~~~ak~~g~~-vI~iT~~ 127 (204)
.+ +-++.-.++-++-+...+.|.+ +|+++-.
T Consensus 91 LlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCfm 125 (154)
T COG4090 91 LLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCFM 125 (154)
T ss_pred EEcccccCcCCCCHHHHHHHHHhcCCCceEEeeHH
Confidence 65 3333333344454555566665 8888854
No 329
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=48.18 E-value=1.2e+02 Score=24.99 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=26.7
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.+-|++|+...+...+++++.+...-..+..+|.+.+.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG 104 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNG 104 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCC
Confidence 56799999999888888777665544456666666544
No 330
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=48.03 E-value=83 Score=24.68 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD 83 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d 83 (204)
.+.++.+.+.+++.+.++|+...-..+..+......-|.+++.++.
T Consensus 159 ~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~ 204 (222)
T cd00296 159 WFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINR 204 (222)
T ss_pred HHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECC
Confidence 4888889999999999999999887777777777777778888774
No 331
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=47.62 E-value=70 Score=20.13 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=39.2
Q ss_pred EEEEecc--hhHHHHHHHHHHHhhcCCeEEEec-CCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 52 VFLYGVG--REGLMLKALCMRLAHLGISTHLVF-DMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 52 I~i~G~G--~S~~~a~~~~~~l~~lg~~~~~~~-d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+.++|.| .|.+++..+...+...++...... +.... ...++.-+++|...-. .+..+.+++-+...
T Consensus 3 l~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~dliitt~~~~---------~~~~~~p~~~i~~~ 71 (84)
T cd00133 3 LVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV-IDLADADLIISTVPLA---------ARFLGKPVIVVSPL 71 (84)
T ss_pred EEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh-hhcCCccEEEECCccc---------cccCCCcEEEEccc
Confidence 3555555 578899999999998888544422 22110 3345555666665422 34556777766644
No 332
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=47.40 E-value=1.4e+02 Score=23.49 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=55.1
Q ss_pred CCcE-EEEecchhHHHHHHHHHHHhhcCCeEEEecC----------------C-CC--C-------CCCCC----cEEEE
Q 028777 49 KGSV-FLYGVGREGLMLKALCMRLAHLGISTHLVFD----------------M-TT--P-------PISSN----DLLIA 97 (204)
Q Consensus 49 a~~I-~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d----------------~-~~--~-------~~~~~----DlvI~ 97 (204)
.++| +++|.|..+--+-..++.|...+..++.+.. . .. . ...+. |.++.
T Consensus 45 ~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIDalfG 124 (205)
T TIGR00197 45 AGHVIIFCGPGNNGGDGFVVARHLKGFGVEVFLLKKEKRIECTEQAEVNLKALKVGGISIDEGNLVKPEDCDVIIDAILG 124 (205)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHhCCCEEEEEccCCcccCcHHHHHHHHHHHhcCCccccccccccccCCEEEEeeec
Confidence 3455 6778888765555555555446777776421 0 00 0 11222 34566
Q ss_pred EeCCCCCHHH-HHHHHHHHHcCCeEEEEecCCC----Cc---chhhccCeEEEeCC
Q 028777 98 SAGPGGFSTV-DAICSRARSYGARVLLLTAQPE----SG---SSVKHASVVAYVPA 145 (204)
Q Consensus 98 iS~sG~t~~~-~~~~~~ak~~g~~vI~iT~~~~----s~---~l~~~ad~~l~~~~ 145 (204)
+..+|.-++. .++++.+.+.++++|+|==..+ +| ..+=.||+++....
T Consensus 125 tGl~~~l~~~~~~~i~~iN~~~~~vlAiDiPSGl~~dtG~~~~~av~Ad~Tvtf~~ 180 (205)
T TIGR00197 125 TGFKGKLREPFKTIVESINELPAPIVSVDIPSGLDVDTGAIEGPAVNADLTITFHA 180 (205)
T ss_pred CCCCCccchHHHHHHHHHHhCCCCeEEEecCCcccCCCCCCCCcceeCCEEEEecC
Confidence 7777765444 4667788888999998832211 11 12445888887754
No 333
>PRK06703 flavodoxin; Provisional
Probab=47.40 E-value=32 Score=25.29 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=27.2
Q ss_pred HHHHHHHHHh----cCCcEEEEecchhH-----HHHHHHHHHHhhcCCeEE
Q 028777 38 MVAELTNTAT----QKGSVFLYGVGREG-----LMLKALCMRLAHLGISTH 79 (204)
Q Consensus 38 ~l~~~~~~i~----~a~~I~i~G~G~S~-----~~a~~~~~~l~~lg~~~~ 79 (204)
.+..+.+.+. +.+++.+||+|... -.++.+..+|...|..+.
T Consensus 67 ~~~~f~~~l~~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~ 117 (151)
T PRK06703 67 EAEDFHEDLENIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELV 117 (151)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEc
Confidence 4555555553 35678889887643 455667778888886543
No 334
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=47.32 E-value=2e+02 Score=25.23 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHH-----------------------HHHHhhcCCeEEEec--C--CCC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKAL-----------------------CMRLAHLGISTHLVF--D--MTT 86 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~-----------------------~~~l~~lg~~~~~~~--d--~~~ 86 (204)
...+.+++....+..+....+++.|.+.+.+-.. ...+...|..+..+. | ...
T Consensus 57 p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~ 136 (418)
T TIGR01326 57 PTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFE 136 (418)
T ss_pred hhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHH
Confidence 3344555555555666777777777765432211 111234565555543 1 111
Q ss_pred CCCCCCcEEEEEeCC----CCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----chhhccCeEEEeCC
Q 028777 87 PPISSNDLLIASAGP----GGFSTVDAICSRARSYGARVLLLTAQPESG-----SSVKHASVVAYVPA 145 (204)
Q Consensus 87 ~~~~~~DlvI~iS~s----G~t~~~~~~~~~ak~~g~~vI~iT~~~~s~-----~l~~~ad~~l~~~~ 145 (204)
..++++.-+|++... |...++-++.+.|+++|+.+|. ++.... |+..-+|+++...+
T Consensus 137 ~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~liv--D~t~~~~~~~~~l~~g~Divv~S~s 202 (418)
T TIGR01326 137 KAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIV--DNTFATPYLCRPIDHGADIVVHSAT 202 (418)
T ss_pred HhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE--ECCCchhhcCCchhcCCeEEEECcc
Confidence 233444444445433 3345778888889999986653 443220 34334777665543
No 335
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=47.26 E-value=45 Score=30.98 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=37.1
Q ss_pred cEEEEec--chhHHHHHHHHHHHhhcCCeEEEec--CCCCCCC-CCCcEEEEEeCCCC
Q 028777 51 SVFLYGV--GREGLMLKALCMRLAHLGISTHLVF--DMTTPPI-SSNDLLIASAGPGG 103 (204)
Q Consensus 51 ~I~i~G~--G~S~~~a~~~~~~l~~lg~~~~~~~--d~~~~~~-~~~DlvI~iS~sG~ 103 (204)
-.++||+ |.+..+|+.++..+...|+.+.+.+ |.....+ ..+.++|+.|..|+
T Consensus 64 v~IlygSqTGnae~lA~~la~~l~~~g~~~~v~~~~d~~~~~L~~~~~vl~v~ST~G~ 121 (600)
T PRK10953 64 ITLISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFKQIAQEKLLIVVTSTQGE 121 (600)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHhCCCCcEEechHhCCHhHhccCCeEEEEECCCCC
Confidence 3478887 8899999999999999998877654 3333334 34556666666554
No 336
>PLN00196 alpha-amylase; Provisional
Probab=46.99 E-value=44 Score=29.65 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=39.1
Q ss_pred HHHhhcCCeEEEecCCCCCC----CCCCcEEEEE-eCCCCCHHHHHHHHHHHHcCCeEEE
Q 028777 69 MRLAHLGISTHLVFDMTTPP----ISSNDLLIAS-AGPGGFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 69 ~~l~~lg~~~~~~~d~~~~~----~~~~DlvI~i-S~sG~t~~~~~~~~~ak~~g~~vI~ 123 (204)
-.|..+|+.++.+++..... -...|..=+- |.-|...+..++++.|+++|++||+
T Consensus 51 dyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVil 110 (428)
T PLN00196 51 DDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIA 110 (428)
T ss_pred HHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEE
Confidence 36788999999988622111 1223333232 5679999999999999999999984
No 337
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=46.94 E-value=30 Score=27.99 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCC-----CCHHHHHHHHHH-HHcCCeEEEEecCCCCcchhhccCeEEEeCCc
Q 028777 91 SNDLLIASAGPG-----GFSTVDAICSRA-RSYGARVLLLTAQPESGSSVKHASVVAYVPAQ 146 (204)
Q Consensus 91 ~~DlvI~iS~sG-----~t~~~~~~~~~a-k~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~ 146 (204)
+-+++++==-+| ...+++++++.. +++|.++|.+|..+ .++.+||.++.+...
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~---~lA~~~dr~i~l~dG 218 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP---ELAKYADRVIELKDG 218 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH---HHHHhCCEEEEEeCC
Confidence 334444444444 456788888776 56699999999654 689999999988653
No 338
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=46.86 E-value=46 Score=30.73 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=34.7
Q ss_pred CcEEEEEeCC-CCCHH---------HHHHHHHHHHcCCeEEEEecCCCCcchhh-ccCeEEEeCC
Q 028777 92 NDLLIASAGP-GGFST---------VDAICSRARSYGARVLLLTAQPESGSSVK-HASVVAYVPA 145 (204)
Q Consensus 92 ~DlvI~iS~s-G~t~~---------~~~~~~~ak~~g~~vI~iT~~~~s~~l~~-~ad~~l~~~~ 145 (204)
-|++|++... ..+.. ....+..++++|+++|.|-.. .+ +.+. .||..|.+..
T Consensus 170 ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr-~s-~ta~~~AD~~l~irP 232 (609)
T cd02751 170 SDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPR-YT-DTAAVLAAEWIPIRP 232 (609)
T ss_pred CCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCC-CC-ccccccCCEEECCCC
Confidence 5777777543 33321 235666789999999998644 45 5676 7999887743
No 339
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=46.80 E-value=31 Score=26.42 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=36.0
Q ss_pred EEEEEeCCCCC---HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCe
Q 028777 94 LLIASAGPGGF---STVDAICSRARSYGARVLLLTAQPESGSSVKHASV 139 (204)
Q Consensus 94 lvI~iS~sG~t---~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~ 139 (204)
-|-++...|.. -..-++++.|++.|...|-|..+.+. |++++.|+
T Consensus 9 ~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLVev~~~a~P-PVckImdy 56 (165)
T TIGR00168 9 EVRLIDENGEQLGIVSREEALEIAEEAGLDLVLISPNAKP-PVCKIMDY 56 (165)
T ss_pred EEEEECCCCcCCCcccHHHHHHHHHHcCCcEEEECCCCCC-CEEEEeeH
Confidence 34455666643 44788999999999999999999998 99998886
No 340
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.71 E-value=51 Score=27.54 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=41.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCC----CCCCCCCcEEEEEeCCCCCHHHHHHHHHH-HHcCCeEEE
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMT----TPPISSNDLLIASAGPGGFSTVDAICSRA-RSYGARVLL 123 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~----~~~~~~~DlvI~iS~sG~t~~~~~~~~~a-k~~g~~vI~ 123 (204)
..+|-++|.|. ++..++..|..-|.++...+... ...+.+-|++|+.-.+...+++.+.+... ...|..+|.
T Consensus 4 ~m~I~iiG~G~---~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~ 80 (308)
T PRK14619 4 PKTIAILGAGA---WGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVT 80 (308)
T ss_pred CCEEEEECccH---HHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEE
Confidence 45788999886 55566667777788887665311 11234567777666654444444333221 123555555
Q ss_pred Ee
Q 028777 124 LT 125 (204)
Q Consensus 124 iT 125 (204)
.|
T Consensus 81 ~s 82 (308)
T PRK14619 81 AT 82 (308)
T ss_pred eC
Confidence 44
No 341
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=46.58 E-value=1.3e+02 Score=25.62 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=58.5
Q ss_pred HHhcCCcEEEEecchh----HHHHHHHHHHHhhcCCeEEE----ecC--C---------CCCCCCCCcEEEEEeCCCCCH
Q 028777 45 TATQKGSVFLYGVGRE----GLMLKALCMRLAHLGISTHL----VFD--M---------TTPPISSNDLLIASAGPGGFS 105 (204)
Q Consensus 45 ~i~~a~~I~i~G~G~S----~~~a~~~~~~l~~lg~~~~~----~~d--~---------~~~~~~~~DlvI~iS~sG~t~ 105 (204)
.|.+|+.|.-.|.|-. ..+.+.++..|. -.+-. ..+ | .-..+.| +|.|.+-.||..+
T Consensus 190 ~L~~A~vVV~~GrG~~~~e~~~~~~~LA~~LG---aavG~SRp~vd~~gW~p~~~QIGqTGk~V~P-~lYiA~GISGAiQ 265 (312)
T PRK11916 190 DLSKAKRVVGVGRGLAAQDDLKMVHELAAVLN---AEVGCSRPIAEGENWMERERYIGVSGVLLKS-DLYLTLGISGQIQ 265 (312)
T ss_pred CcccCCEEEECCCCCCChHHHHHHHHHHHHhC---CEEEecHHHHccCCCCChhcEECCCCCCcCc-cEEEEeccccHHH
Confidence 5678999999988874 245556665553 22111 111 1 1123444 7999999999877
Q ss_pred HHHHHHHHHHHcC-CeEEEEecCCCCcchhhccCeEEEe
Q 028777 106 TVDAICSRARSYG-ARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 106 ~~~~~~~~ak~~g-~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
.+.-+ ++ -.||+|=..++. |+.+.|||-+.-
T Consensus 266 H~aGm------~~s~~IVAIN~Dp~A-PIF~~ADygiVg 297 (312)
T PRK11916 266 HMVGG------NGAKVIVAINKDKNA-PIFNYADYGLVG 297 (312)
T ss_pred HHhhc------ccCCEEEEECCCCCC-CchhhCCeeEee
Confidence 76422 22 248899999999 999999998854
No 342
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=46.52 E-value=45 Score=23.75 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=30.2
Q ss_pred EEEEEeCCCCCHHHHHHHHH-HHHcCCeE--EEEecCCCCcchhhccCeEEEe
Q 028777 94 LLIASAGPGGFSTVDAICSR-ARSYGARV--LLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 94 lvI~iS~sG~t~~~~~~~~~-ak~~g~~v--I~iT~~~~s~~l~~~ad~~l~~ 143 (204)
+++..|.+|+|+.+.+.+.. +++.|+.+ +-++..+.. .+.+ +|..+..
T Consensus 2 ~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~-~l~~-~d~iilg 52 (140)
T TIGR01753 2 LIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAE-DLLS-YDAVLLG 52 (140)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHH-HHhc-CCEEEEE
Confidence 57889999999999887654 56666554 444433323 3433 5655544
No 343
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=46.28 E-value=1.4e+02 Score=23.11 Aligned_cols=89 Identities=13% Similarity=0.030 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q 028777 35 LDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRA 114 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~a 114 (204)
+.+...++.+.+.+.+..+++.+|++...+..+...+..- .+.+..+-... ...++.++..-..+ ...+.++++.+
T Consensus 16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~-~~~I~~nGa~i-~~~~~~~l~~~~i~--~~~~~~i~~~~ 91 (254)
T PF08282_consen 16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID-DYFICSNGALI-DDPKGKILYEKPID--SDDVKKILKYL 91 (254)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC-SEEEEGGGTEE-EETTTEEEEEESB---HHHHHHHHHHH
T ss_pred eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch-hhhccccccee-eecccccchhhhee--ccchhheeehh
Confidence 3346666777777789999999999988776665543321 22333222222 23445555444444 66778899999
Q ss_pred HHcCCeEEEEecC
Q 028777 115 RSYGARVLLLTAQ 127 (204)
Q Consensus 115 k~~g~~vI~iT~~ 127 (204)
++++..+...|..
T Consensus 92 ~~~~~~~~~~~~~ 104 (254)
T PF08282_consen 92 KEHNISFFFYTDD 104 (254)
T ss_dssp HHTTCEEEEEESS
T ss_pred hhcccccccccce
Confidence 9999877777733
No 344
>PRK07582 cystathionine gamma-lyase; Validated
Probab=45.91 E-value=1.9e+02 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCC------CCcchhhccCeEEEeCC
Q 028777 104 FSTVDAICSRARSYGARVLLLTAQP------ESGSSVKHASVVAYVPA 145 (204)
Q Consensus 104 t~~~~~~~~~ak~~g~~vI~iT~~~------~s~~l~~~ad~~l~~~~ 145 (204)
..++-++++.|+++|+.+| .++. .. |+.-.+|+++...+
T Consensus 148 v~di~~I~~~a~~~g~~lv--VD~t~~~~~~~~-p~~~g~Divv~S~s 192 (366)
T PRK07582 148 VCDLAALAAAAHAAGALLV--VDNTTATPLGQR-PLELGADLVVASDT 192 (366)
T ss_pred ccCHHHHHHHHHHcCCEEE--EECCCCCccccC-chhcCCcEEEeccc
Confidence 4567788888999987554 3332 23 55445787665433
No 345
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=45.88 E-value=1.4e+02 Score=23.30 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=46.4
Q ss_pred cCCcEEEEecchhH--HHHHHHHHHHhhcCCeEEEecC----CCCCCCCCCcEEEEEeCC---CCC-HHHHHHHHHHHHc
Q 028777 48 QKGSVFLYGVGREG--LMLKALCMRLAHLGISTHLVFD----MTTPPISSNDLLIASAGP---GGF-STVDAICSRARSY 117 (204)
Q Consensus 48 ~a~~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d----~~~~~~~~~DlvI~iS~s---G~t-~~~~~~~~~ak~~ 117 (204)
..+.++++|--+++ .+|..+.+.+..-|..+.+++. .........|++|+=-.. +.. ..+..+++..+++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~ 120 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAH 120 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHc
Confidence 34679999875554 3666777777666777777653 111223445666553332 112 2345566666677
Q ss_pred CCeEEEEecC
Q 028777 118 GARVLLLTAQ 127 (204)
Q Consensus 118 g~~vI~iT~~ 127 (204)
|..++.+|+.
T Consensus 121 ~~~~vl~~~~ 130 (227)
T PRK08903 121 GQGALLVAGP 130 (227)
T ss_pred CCcEEEEeCC
Confidence 7766666655
No 346
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.88 E-value=87 Score=25.54 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 028777 13 ASQICNQIASIFSKPTAPHPPPLDIMVAELTNTAT 47 (204)
Q Consensus 13 ~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~ 47 (204)
+..+.++|.+.+..+++++++.+++..+++.+.+.
T Consensus 104 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~ 138 (264)
T cd01020 104 MSKVANALADALVKADPDNKKYYQANAKKFVASLK 138 (264)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34577788888888888777667777766655543
No 347
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=45.76 E-value=54 Score=28.22 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 106 TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 106 ~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
--.-++..|++.|.+++.+..++++ |-...||..+..+
T Consensus 13 l~~ml~~aa~~lG~~v~~~d~~~~~-pa~~~ad~~~~~~ 50 (372)
T PRK06019 13 LGRMLALAAAPLGYKVIVLDPDPDS-PAAQVADEVIVAD 50 (372)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCC-chhHhCceEEecC
Confidence 3445667889999999999999999 9999999887654
No 348
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=45.73 E-value=1.3e+02 Score=22.61 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=51.5
Q ss_pred HHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc-CCeEEEecC---------CCCCCCCCCcEEEEEeCCCCCHHHHHH
Q 028777 41 ELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL-GISTHLVFD---------MTTPPISSNDLLIASAGPGGFSTVDAI 110 (204)
Q Consensus 41 ~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~d---------~~~~~~~~~DlvI~iS~sG~t~~~~~~ 110 (204)
.+++.|++.+-=++||.-.+.... +...|.+- +++.+.... .+ ...++--++++.+-+|-+ ..+..
T Consensus 2 ~l~~~L~~~Gi~~vFg~pG~~~~~--l~~al~~~~~i~~i~~rhE~~A~~mA~gy-ar~t~~gv~~~t~GpG~~-n~~~g 77 (162)
T cd07038 2 YLLERLKQLGVKHVFGVPGDYNLP--LLDAIEENPGLRWVGNCNELNAGYAADGY-ARVKGLGALVTTYGVGEL-SALNG 77 (162)
T ss_pred HHHHHHHHcCCCEEEEeCCccHHH--HHHHHhhcCCceEEeeCCHHHHHHHHHHH-HHhhCCEEEEEcCCccHH-HHHHH
Confidence 467788877777778874443322 22223222 566665443 11 122234455665666654 56677
Q ss_pred HHHHHHcCCeEEEEecCCCC
Q 028777 111 CSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 111 ~~~ak~~g~~vI~iT~~~~s 130 (204)
+..|...++|+|.||+....
T Consensus 78 l~~A~~~~~Pvl~i~g~~~~ 97 (162)
T cd07038 78 IAGAYAEHVPVVHIVGAPST 97 (162)
T ss_pred HHHHHHcCCCEEEEecCCCc
Confidence 77889999999999988654
No 349
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=45.62 E-value=56 Score=25.24 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCc-chhhccCeEEEeCCcc
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESG-SSVKHASVVAYVPAQT 147 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~-~l~~~ad~~l~~~~~~ 147 (204)
.-|.++.+|.-|....+ ++.++++|..|+.+.-.+... .|.+.||+.+......
T Consensus 110 ~~D~ivl~SgD~DF~p~---v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~L~~~~ 164 (181)
T COG1432 110 NVDTIVLFSGDGDFIPL---VEAARDKGKRVEVAGIEPMTSSDLRNAADYYIDLKSLE 164 (181)
T ss_pred CCCEEEEEcCCccHHHH---HHHHHHcCCEEEEEecCCcCHHHHHHhhcceEEchhhh
Confidence 56899999988876665 677888898888776554321 6788999988886543
No 350
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=45.35 E-value=42 Score=29.30 Aligned_cols=88 Identities=20% Similarity=0.129 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcC---Cc--EEEEecchhHHH-------HHHHHHHHhhcCCeEEE--e------cCCCCCCCCCCcEEE
Q 028777 37 IMVAELTNTATQK---GS--VFLYGVGREGLM-------LKALCMRLAHLGISTHL--V------FDMTTPPISSNDLLI 96 (204)
Q Consensus 37 ~~l~~~~~~i~~a---~~--I~i~G~G~S~~~-------a~~~~~~l~~lg~~~~~--~------~d~~~~~~~~~DlvI 96 (204)
+.++++++.+.++ ++ |..+| |-.-++ +..++.+... |+.... . ++.....+.+.++.|
T Consensus 40 etle~~i~~~~~~~~~~~v~~~w~G-GEPlL~~~~f~~~~~~l~~k~~~-~~~i~~siqTNg~LL~~e~~e~l~~~~~~I 117 (378)
T COG0641 40 ETLEEYVRQYIAASNGDKVTFTWQG-GEPLLAGLDFYRKAVALQQKYAN-GKTISNALQTNGTLLNDEWAEFLAEHDFLI 117 (378)
T ss_pred HHHHHHHHHHHhhCCCCeeEEEEEC-CccccchHHHHHHHHHHHHHHhc-CCeeEEEEEEcccccCHHHHHHHHhcCceE
Confidence 3777777777643 44 44555 334333 3344445555 554442 2 222224456777899
Q ss_pred EEeCCC----------------CCHHHHHHHHHHHHcCCeEEEEec
Q 028777 97 ASAGPG----------------GFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 97 ~iS~sG----------------~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
.+|.-| ....+++.++.+++.+++.-.+|.
T Consensus 118 gISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~v 163 (378)
T COG0641 118 GISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTV 163 (378)
T ss_pred EEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEE
Confidence 998766 567788999999999887554443
No 351
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=45.26 E-value=99 Score=27.23 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecch-hHHHHHHHHHHH
Q 028777 16 ICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGR-EGLMLKALCMRL 71 (204)
Q Consensus 16 ~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~-S~~~a~~~~~~l 71 (204)
..+-.++.+...++. +.+......+...+|+++.|.|. |..+|+-+...+
T Consensus 10 l~~~~~aav~aadP~------r~~~~~lp~~~p~gr~~Vig~GKAs~~MA~a~~~~~ 60 (422)
T COG2379 10 LLELFDAAVAAADPY------RALAAHLPVLPPKGRTIVIGAGKASAEMARAFEEHW 60 (422)
T ss_pred HHHHHHHHHHhcCHH------HHHHhhCCCCCCCCceEEEecchhHHHHHHHHHHHh
Confidence 344455566666654 13333333334478999999999 778999888877
No 352
>PRK05723 flavodoxin; Provisional
Probab=45.02 E-value=56 Score=24.44 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCHHHHHHH-HHHHHcCCeEEEEe
Q 028777 94 LLIASAGPGGFSTVDAIC-SRARSYGARVLLLT 125 (204)
Q Consensus 94 lvI~iS~sG~t~~~~~~~-~~ak~~g~~vI~iT 125 (204)
.++.-|.+|+++++-+.+ +.++++|.++..+.
T Consensus 4 ~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 4 AILSGSVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 467789999999997766 66788888876544
No 353
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=44.83 E-value=1.1e+02 Score=26.44 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=40.8
Q ss_pred CCCCCc-EEEEEeCCCCCHH--HHHHHHHHHHcCCeEEEEecCCCCc--------------chhhccCeEEEeCCccc
Q 028777 88 PISSND-LLIASAGPGGFST--VDAICSRARSYGARVLLLTAQPESG--------------SSVKHASVVAYVPAQTM 148 (204)
Q Consensus 88 ~~~~~D-lvI~iS~sG~t~~--~~~~~~~ak~~g~~vI~iT~~~~s~--------------~l~~~ad~~l~~~~~~~ 148 (204)
.+..-| +++.....|.|-. .--+++.+|+.|+.||++...|.+. .|.+.+|-.|.+|.+.-
T Consensus 92 ~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkl 169 (338)
T COG0206 92 ALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKL 169 (338)
T ss_pred HhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEecHHH
Confidence 345556 4444444443322 2335677888999999998887762 57788999999987543
No 354
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=44.60 E-value=91 Score=22.97 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEec
Q 028777 103 GFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 103 ~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
....+.++++.++++|+++|.++.
T Consensus 86 ~~~~l~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 86 TRANLRQMIETAQARGAPVLLVGM 109 (177)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEec
Confidence 334567788888888999888864
No 355
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=44.54 E-value=1.7e+02 Score=24.09 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-----------c-CCcEEEEecchhHHHHHHHHHHHhhcCCeEEE
Q 028777 13 ASQICNQIASIFSKPTAPHPPPLDIMVAELTNTAT-----------Q-KGSVFLYGVGREGLMLKALCMRLAHLGISTHL 80 (204)
Q Consensus 13 ~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~-----------~-a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~ 80 (204)
+..+.+.+.+.+..+++.+++.+++..+++.+.|. . .++.++..-. . |.|....+|+....
T Consensus 122 ~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~H~----a---f~Y~~~~~gl~~~~ 194 (282)
T cd01017 122 AIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQEYRAKLAKAKGKTFVTQHA----A---FGYLARRYGLKQIA 194 (282)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEecc----c---HHHHHHHCCCeEEe
Confidence 34567788888888887766656666555554442 1 1222332211 2 22233344555443
Q ss_pred ecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 81 VFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 81 ~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
+-. ..+ -.....+++.++.+.+|+.|+++|..-...++
T Consensus 195 ~~~-----~~~-------~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~ 232 (282)
T cd01017 195 IVG-----VSP-------EVEPSPKQLAELVEFVKKSDVKYIFFEENASS 232 (282)
T ss_pred ccc-----CCC-------CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh
Confidence 210 000 11234577888888899999998888766665
No 356
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=44.54 E-value=53 Score=29.46 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEe---cchh---H-HHHHHHHHHHhhcCCeEEEecC------CCCCCCCCCcEEEEEeCC
Q 028777 35 LDIMVAELTNTATQKGSVFLYG---VGRE---G-LMLKALCMRLAHLGISTHLVFD------MTTPPISSNDLLIASAGP 101 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I~i~G---~G~S---~-~~a~~~~~~l~~lg~~~~~~~d------~~~~~~~~~DlvI~iS~s 101 (204)
....++++++.+..|+.|+++. .|.. + .-++.++.+....+... +.+ .....+.++|++++++..
T Consensus 367 t~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~~~~--~~~~~~~~~~l~~~~~~gD~il~mGAG 444 (459)
T COG0773 367 TRDLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPGHVD--VPDLDDLVELLAKVAQPGDVILFMGAG 444 (459)
T ss_pred HHHHHHHHHHHHhcCCEEEEecccccCCCCCcCCccHHHHHHHhhcCCccc--CCCHHHHHHHHHhhCCCCCEEEEecCC
Confidence 3457889999999999999764 4443 3 55667777777665544 233 455667899999999997
Q ss_pred CCCHHHHHHHHH
Q 028777 102 GGFSTVDAICSR 113 (204)
Q Consensus 102 G~t~~~~~~~~~ 113 (204)
+-+.-.-++++.
T Consensus 445 di~~~~~~~~~~ 456 (459)
T COG0773 445 DIGKIARELLEA 456 (459)
T ss_pred cHHHHHHHHHHH
Confidence 665555554443
No 357
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=44.47 E-value=2e+02 Score=24.60 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEEecchhH--HHHHHHHHHHhhcCCeEEEec-CC
Q 028777 12 LASQICNQIASIFSKPTAPHPPPLDIMVAELTNTAT----QKGSVFLYGVGREG--LMLKALCMRLAHLGISTHLVF-DM 84 (204)
Q Consensus 12 ~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~----~a~~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~-d~ 84 (204)
+..--...+.+.+..++...++ .......+.+.+. ++..|.+.|.-+++ .++..+...|...|.++.++. |.
T Consensus 16 ~~~g~~~a~a~~it~~e~~~~~-~~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 16 VLAGDRAALARAITLVESTRPD-HRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred HHcCCHHHHHHHHHHHhCCCch-hhHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3333344666777777665221 1122445555554 34456777664443 355666777777787777653 21
Q ss_pred C--------------CCCCCCCcEEEEEeC------CCCCHHHHHHHHHHHHcCCeEEEEecCC----CCcchhhccCeE
Q 028777 85 T--------------TPPISSNDLLIASAG------PGGFSTVDAICSRARSYGARVLLLTAQP----ESGSSVKHASVV 140 (204)
Q Consensus 85 ~--------------~~~~~~~DlvI~iS~------sG~t~~~~~~~~~ak~~g~~vI~iT~~~----~s~~l~~~ad~~ 140 (204)
. ...+..+.-+++.|. .|-+..+.++++.+...|..+|.|=... .. .+...||.+
T Consensus 95 ~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~-~i~~~aD~v 173 (332)
T PRK09435 95 SSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSET-AVAGMVDFF 173 (332)
T ss_pred CccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchh-HHHHhCCEE
Confidence 1 111223333455552 2346777888888888899888775432 22 567889998
Q ss_pred EEe
Q 028777 141 AYV 143 (204)
Q Consensus 141 l~~ 143 (204)
+.+
T Consensus 174 lvv 176 (332)
T PRK09435 174 LLL 176 (332)
T ss_pred EEE
Confidence 777
No 358
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=44.45 E-value=1.8e+02 Score=25.59 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh----hc-CCeEEEecC--C------------------CC-CC
Q 028777 35 LDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA----HL-GISTHLVFD--M------------------TT-PP 88 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~----~l-g~~~~~~~d--~------------------~~-~~ 88 (204)
+.+.+.++++...+.+-|+++++-.+..++.++..-.. +. |++++.++- . .. ..
T Consensus 84 L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~ 163 (427)
T PRK02842 84 LDRVVEELIKRRPNISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAP 163 (427)
T ss_pred HHHHHHHHHhccCCCCEEEEECCChHHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHHHHhhhccccc
Confidence 34455554444446788999999999988888765332 23 777776431 0 00 12
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEE-EEec
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVL-LLTA 126 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI-~iT~ 126 (204)
-.++++.|+-+.+... .-++-+.+++.|++++ .+++
T Consensus 164 ~~~~~VniiG~~~~~d--~~el~~lL~~~Gi~v~~~lp~ 200 (427)
T PRK02842 164 ADHPSLVLVGSLADVV--EDQLTLEFKKLGIGVVGFLPA 200 (427)
T ss_pred CCCCcEEEEEeCCcch--HHHHHHHHHHcCCeeEEEeCC
Confidence 2456787777766433 4566677889999987 5554
No 359
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=44.40 E-value=1.2e+02 Score=23.13 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=41.8
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecC-CCCC--CCCCCcEEEEEeCCCCC---HHHHHHHHHHHHcCCeEEEEe
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFD-MTTP--PISSNDLLIASAGPGGF---STVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-~~~~--~~~~~DlvI~iS~sG~t---~~~~~~~~~ak~~g~~vI~iT 125 (204)
|.+...|....+ ...+...|..+..+.. .... ...+=|.+|+.--.|.. ....++++.+.+++.|+++|+
T Consensus 1 i~i~d~g~~~~~----~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC 76 (178)
T cd01744 1 VVVIDFGVKHNI----LRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGIC 76 (178)
T ss_pred CEEEecCcHHHH----HHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEEC
Confidence 356667776654 4445556887776642 1111 11122443333222332 445677888888999999998
Q ss_pred cCCC
Q 028777 126 AQPE 129 (204)
Q Consensus 126 ~~~~ 129 (204)
-...
T Consensus 77 ~G~Q 80 (178)
T cd01744 77 LGHQ 80 (178)
T ss_pred HHHH
Confidence 6543
No 360
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=44.32 E-value=1.4e+02 Score=22.58 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=54.0
Q ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH---cCC-eEEEEecCCCC-c-chhhccCeEEEeCCccccCCCcccccCC
Q 028777 86 TPPISSNDLLIASAGPGGFSTVDAICSRARS---YGA-RVLLLTAQPES-G-SSVKHASVVAYVPAQTMADDDDEQGKEK 159 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~---~g~-~vI~iT~~~~s-~-~l~~~ad~~l~~~~~~~~~~~~~~~~~~ 159 (204)
...+.+++.+|++...|..-...++++...+ .|. .++-+.+.+.. + .+.+.||..+.++.-+..
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfp---------- 130 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFP---------- 130 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS-------------
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCc----------
Confidence 3456799999999999988888877777666 565 66666665442 0 456779998877543321
Q ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHHhCCC
Q 028777 160 SRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQS 192 (204)
Q Consensus 160 ~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~ 192 (204)
-..+-.+++|=||..+.-..|++
T Consensus 131 ----------H~larlvL~EQiYRA~tI~~g~P 153 (155)
T PF02590_consen 131 ----------HQLARLVLLEQIYRAFTILNGHP 153 (155)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTT-T
T ss_pred ----------HHHHHHHHHHHHHHHHHHHcCCC
Confidence 11245678899998887766653
No 361
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=44.30 E-value=1.2e+02 Score=25.84 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=41.1
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
||.+.|.|.. +..+...+.++|..++.++. ...+...--|-.+.++. . +.-.+.+.|++.++..|..+.
T Consensus 1 kililG~g~~---~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~--~--d~~~l~~~~~~~~id~v~~~~ 70 (380)
T TIGR01142 1 RVLLLGSGEL---GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINM--L--DGDALRAVIEREKPDYIVPEI 70 (380)
T ss_pred CEEEECCCHH---HHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCC--C--CHHHHHHHHHHhCCCEEEecc
Confidence 5788998764 33445567888999988764 11222222344555543 2 234455677777888775543
No 362
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=44.12 E-value=1.3e+02 Score=22.48 Aligned_cols=48 Identities=31% Similarity=0.329 Sum_probs=32.9
Q ss_pred HHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCC-HHHHHHHHHHHHcCCeEEEEe
Q 028777 68 CMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGF-STVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 68 ~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t-~~~~~~~~~ak~~g~~vI~iT 125 (204)
+.-|.++|.++.+++ -| ++.++.++.. ..+.++++.+++.|++++.=.
T Consensus 43 a~~l~~LG~~~~~~~---------~~-~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~ 91 (196)
T cd00287 43 AVALARLGVSVTLVG---------AD-AVVISGLSPAPEAVLDALEEARRRGVPVVLDP 91 (196)
T ss_pred HHHHHHCCCcEEEEE---------cc-EEEEecccCcHHHHHHHHHHHHHcCCeEEEeC
Confidence 345677898888877 44 3444444444 678889999999999866444
No 363
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=44.09 E-value=84 Score=28.77 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=44.4
Q ss_pred ecchhHHHHHHHHHHHhhcCCeEEEecCCCCCC-----CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Q 028777 56 GVGREGLMLKALCMRLAHLGISTHLVFDMTTPP-----ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 56 G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~-----~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 123 (204)
|.|.-.-+.+.+ ..|..+|+.++.+.+..... ....|..=+=..-|...++.++++.|+++|++||.
T Consensus 22 ~~G~~~gi~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 22 GTGDLRGIIEKL-DYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CccCHHHHHHhH-HHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 345533344444 46788999999988732221 12234333444557889999999999999999884
No 364
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=43.94 E-value=1.3e+02 Score=28.89 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhc------CCcEEEEecchhHHHHHHHHHHHh-hcCCeEEEec----C-----------CC---CCCC
Q 028777 35 LDIMVAELTNTATQ------KGSVFLYGVGREGLMLKALCMRLA-HLGISTHLVF----D-----------MT---TPPI 89 (204)
Q Consensus 35 ~~~~l~~~~~~i~~------a~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~~----d-----------~~---~~~~ 89 (204)
-++.++.+++.+++ .+.|.+++.|....-..++..+|. .+|-+.+... + .. ...+
T Consensus 289 WdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~~~~~~~g~~~~~~~~~Di 368 (776)
T PRK09129 289 WETALEYVAEGLKGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQDFRDDAAAPGAPWLGMPIAEL 368 (776)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccCCccccchhhhhcccccCCCHHHH
Confidence 45678888887763 466887876653322222333332 3443211110 0 00 0112
Q ss_pred CCCcEEEEEeCC-CCC-HHHHHHHHHHHHcCCeEEEEecC
Q 028777 90 SSNDLLIASAGP-GGF-STVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 90 ~~~DlvI~iS~s-G~t-~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.+-|++|++... .++ +.....++.++++|+++|.|-..
T Consensus 369 ~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr 408 (776)
T PRK09129 369 SNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPV 408 (776)
T ss_pred HhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCC
Confidence 345677777543 333 33455667788999999888743
No 365
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=43.83 E-value=64 Score=23.80 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCCCcEEEEEeCCCCCH----HHHHHHHHHHHcCCeEEEEecC
Q 028777 89 ISSNDLLIASAGPGGFS----TVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~----~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+.++|++++-+.+.=.+ +...+.+.++++|+.+++++..
T Consensus 57 ~~~gd~lvv~~ldRl~R~~~~~~~~~~~~l~~~gv~l~~i~~~ 99 (146)
T cd03767 57 AQSGDVLLVEQIDRLSRLPLDDWETLKASIAAKGLRVVSLDLP 99 (146)
T ss_pred hhCCCEEEEEeCccccCCCHHHHHHHHHHHHHCCcEEEEeecC
Confidence 45678988888775443 4566778899999999999843
No 366
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=43.78 E-value=1.8e+02 Score=25.27 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHH-----------------------HHHhhcCCeEEEecC----CC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALC-----------------------MRLAHLGISTHLVFD----MT 85 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~-----------------------~~l~~lg~~~~~~~d----~~ 85 (204)
....+.+++....+..++...+++.|.+.+.+-.+. ..+...|..+..+.. ..
T Consensus 64 ~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l 143 (398)
T PRK07504 64 NPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNW 143 (398)
T ss_pred CchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHH
Confidence 344566666666667777777788887664322110 011123444444331 11
Q ss_pred CCCCCCCcEEEEEeC----CCCCHHHHHHHHHHHHcCCeEEEEecCCC------CcchhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIASAG----PGGFSTVDAICSRARSYGARVLLLTAQPE------SGSSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~----sG~t~~~~~~~~~ak~~g~~vI~iT~~~~------s~~l~~~ad~~l~~~~ 145 (204)
...++++.-+|+++. +|...++-++.+.|+++|+.+| .++.. . |+.--+|+++...+
T Consensus 144 ~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lv--vD~a~a~~~~~~-~~~~gaDivv~S~s 210 (398)
T PRK07504 144 EKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLV--VDNVFATPLFQK-PLELGAHIVVYSAT 210 (398)
T ss_pred HHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEE--EECCccccccCC-chhhCCCEEEeecc
Confidence 123445544555333 3566677888888999997654 34432 3 44445788776644
No 367
>PRK12313 glycogen branching enzyme; Provisional
Probab=43.77 E-value=79 Score=29.52 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCCeEEEecCCCCCCC------CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Q 028777 62 LMLKALCMRLAHLGISTHLVFDMTTPPI------SSNDLLIASAGPGGFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 62 ~~a~~~~~~l~~lg~~~~~~~d~~~~~~------~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 123 (204)
-+++.+.-.|..+|++++.+.+...... ...|..=+=+.-|...+..++++.|+++|+.||.
T Consensus 171 ~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 171 ELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred HHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3455555678899999999876322211 2223333344557788999999999999999984
No 368
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=43.75 E-value=78 Score=27.93 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=49.2
Q ss_pred HHHHHHHHHh----cCCcEEEEecchhHHHHHHHHHHHhhcCCeEE-EecC---CCCCCCCCCcEEEEEeCCCCCHHHHH
Q 028777 38 MVAELTNTAT----QKGSVFLYGVGREGLMLKALCMRLAHLGISTH-LVFD---MTTPPISSNDLLIASAGPGGFSTVDA 109 (204)
Q Consensus 38 ~l~~~~~~i~----~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~-~~~d---~~~~~~~~~DlvI~iS~sG~t~~~~~ 109 (204)
.++.+++.+. ..++|.+.|.=... -...+...|..+|+++. .+.+ .....+..+..+++++.++ ..
T Consensus 151 ~~~alv~~~~~~~~~~~~VniiG~~~~~-d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~~~~~~~~~~~~~~~-----~~ 224 (427)
T PRK02842 151 VLAALVPFCPEAPADHPSLVLVGSLADV-VEDQLTLEFKKLGIGVVGFLPARRFTELPAIGPGTVVALAQPFL-----SD 224 (427)
T ss_pred HHHHHhhhcccccCCCCcEEEEEeCCcc-hHHHHHHHHHHcCCeeEEEeCCccHHHHhhcCcCcEEEEeCHHH-----HH
Confidence 4444444443 34678888873322 23678888899999985 4544 2223445677776654432 24
Q ss_pred HHHHHHHcCCeEEEE
Q 028777 110 ICSRARSYGARVLLL 124 (204)
Q Consensus 110 ~~~~ak~~g~~vI~i 124 (204)
+++..+++|++.+..
T Consensus 225 ~A~~L~~~GiP~~~~ 239 (427)
T PRK02842 225 TARALRERGAKVLTA 239 (427)
T ss_pred HHHHHHHcCCccccC
Confidence 667778889987654
No 369
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=43.72 E-value=53 Score=24.41 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 92 NDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
.-++|++|-...+..+.++++.+|+.|+.++.|.-
T Consensus 104 ~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~ 138 (164)
T cd01482 104 PKVVILITDGKSQDDVELPARVLRNLGVNVFAVGV 138 (164)
T ss_pred CEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence 34788887655556677889999999998887753
No 370
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=43.72 E-value=67 Score=29.45 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcCCcE-EEEecchh-HHHHHHHHHHHhhcCCeEEEecC----------CC-----CCCCCCCcEEE
Q 028777 34 PLDIMVAELTNTATQKGSV-FLYGVGRE-GLMLKALCMRLAHLGISTHLVFD----------MT-----TPPISSNDLLI 96 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I-~i~G~G~S-~~~a~~~~~~l~~lg~~~~~~~d----------~~-----~~~~~~~DlvI 96 (204)
...+.++++++.|.+|+|. ++.|.|-. .-..+.+.....++|.++..-.. .. ...+.+-||+|
T Consensus 205 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl 284 (569)
T PRK08327 205 PDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVL 284 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEE
Confidence 3467899999999998765 55666663 23455566666678888775211 11 12335668888
Q ss_pred EEeCC
Q 028777 97 ASAGP 101 (204)
Q Consensus 97 ~iS~s 101 (204)
++-..
T Consensus 285 ~lG~~ 289 (569)
T PRK08327 285 VVDSD 289 (569)
T ss_pred EeCCC
Confidence 87654
No 371
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=43.52 E-value=2e+02 Score=24.32 Aligned_cols=141 Identities=11% Similarity=0.117 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhh-cCCeEEEe--cCC-------
Q 028777 15 QICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAH-LGISTHLV--FDM------- 84 (204)
Q Consensus 15 ~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~-lg~~~~~~--~d~------- 84 (204)
...+.+++..+.+.+. .+........++..+...-.| ++|.|....+|..+...|.. .|.++... .+.
T Consensus 167 ~~~~~l~~~~~~~~~~-~~~~~~~A~~lA~~~~~~~pv-~~gs~~~~~~a~~~~~~~~Ena~~~~~~~~~pe~~H~~~~~ 244 (337)
T PRK08674 167 ETKIVLSELAEGLKEK-VPTLKNLAKRLAGKLYGRIPV-IYGSGLTLAVAYRWKTQINENAKYPAFYNEIPELNHNEIVG 244 (337)
T ss_pred HHHHHHHHHHHhhCcC-CCcccCHHHHHHHHHhCCCCE-EEeCcccHHHHHHHHHHHHHhcCCccccccCCcccccceee
Confidence 3344444444444322 112223555777776664444 44777888899999988864 55555432 121
Q ss_pred -CCC-CCCCCcEEEEEeCCCCCH----HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccC
Q 028777 85 -TTP-PISSNDLLIASAGPGGFS----TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKE 158 (204)
Q Consensus 85 -~~~-~~~~~DlvI~iS~sG~t~----~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~ 158 (204)
... ... .-+.+++-.+.... +.....+.++++|++++.|....++ ++.++.
T Consensus 245 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~~~g~~-~~~~l~--------------------- 301 (337)
T PRK08674 245 YERPQSLL-KYFFVVVLRDSEHPRIKKRVEITIDILTEAVINVIEIYPEGNS-PLARIF--------------------- 301 (337)
T ss_pred ccCchhhc-cceEEEEEcCCccHHHHHHHHHHHHHHHhcCCCeEEEecCCCc-HHHHHH---------------------
Confidence 111 011 11223332222322 2223345566789998888866555 432221
Q ss_pred CCCCccccccHHHHHHHHHHHHHHHHHHHHhCCChH
Q 028777 159 KSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPE 194 (204)
Q Consensus 159 ~~~~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~~~ 194 (204)
..+++.|.....++...|..|.
T Consensus 302 --------------~L~~~~d~as~~la~~~gvdP~ 323 (337)
T PRK08674 302 --------------SLIYLGDFASLYLAELRGVDPT 323 (337)
T ss_pred --------------HHHHHHHHHHHHHHHHhCCCCc
Confidence 2567788888888888888765
No 372
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=43.49 E-value=2.3e+02 Score=24.87 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=46.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHHh------------hcC-----C-------eEEEecC-----CCCCCCCCCcEEEEEe
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLA------------HLG-----I-------STHLVFD-----MTTPPISSNDLLIASA 99 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~------------~lg-----~-------~~~~~~d-----~~~~~~~~~DlvI~iS 99 (204)
.++..+++...+..+|+..+..|. .+| . ....+.| .....+..+|++|+-|
T Consensus 6 ~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs 85 (382)
T PRK06827 6 VGSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKGEILESVRGKDIYILQD 85 (382)
T ss_pred CCceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEEEECCCCCCCeEEEEec
Confidence 456677776667788888888882 122 1 1222334 2334566789999999
Q ss_pred CCC---------------CCHHH---HHHHHHHHHcCCe-EEEEe
Q 028777 100 GPG---------------GFSTV---DAICSRARSYGAR-VLLLT 125 (204)
Q Consensus 100 ~sG---------------~t~~~---~~~~~~ak~~g~~-vI~iT 125 (204)
.++ -+..+ +-++..+| .|+. +.++.
T Consensus 86 ~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~Vi 129 (382)
T PRK06827 86 VGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIM 129 (382)
T ss_pred CCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEe
Confidence 763 23334 44678888 8985 44443
No 373
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=43.25 E-value=79 Score=23.93 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=43.7
Q ss_pred CcEEEEecchhH--HHHHHHHHHHhhcCCeEEEecC-CCCCCCCCCcEEEEEeCCCCCH---HHHHHHHHHHHcCCeEEE
Q 028777 50 GSVFLYGVGREG--LMLKALCMRLAHLGISTHLVFD-MTTPPISSNDLLIASAGPGGFS---TVDAICSRARSYGARVLL 123 (204)
Q Consensus 50 ~~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d-~~~~~~~~~DlvI~iS~sG~t~---~~~~~~~~ak~~g~~vI~ 123 (204)
-.|++.|.-.|+ .+|..+..+|...|.+++.++- .....+.+ |+ .+|..+... .+.++++.+.+.|..+|.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~-dl--~fs~~dR~e~~rr~~~~A~ll~~~G~ivIv 79 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA-DL--GFSKEDREENIRRIAEVAKLLADQGIIVIV 79 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT-T----SSHHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC-CC--CCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 357788774433 6999999999999999999863 33333433 33 333333332 344555666677886664
Q ss_pred EecC
Q 028777 124 LTAQ 127 (204)
Q Consensus 124 iT~~ 127 (204)
=+-.
T Consensus 80 a~is 83 (156)
T PF01583_consen 80 AFIS 83 (156)
T ss_dssp E---
T ss_pred eecc
Confidence 4433
No 374
>PRK05402 glycogen branching enzyme; Provisional
Probab=43.23 E-value=85 Score=29.88 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCeEEEecCCCCCC------CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Q 028777 62 LMLKALCMRLAHLGISTHLVFDMTTPP------ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLL 123 (204)
Q Consensus 62 ~~a~~~~~~l~~lg~~~~~~~d~~~~~------~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 123 (204)
-+++.+.-.|..+|+.++.+.+..... -...|..-+=+.-|...+..++++.|+++|+.||.
T Consensus 266 ~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 266 ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 345555556889999999987632211 12334444456678889999999999999999984
No 375
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=43.13 E-value=2.1e+02 Score=24.47 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=62.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHHh----hcCCeEEEecC---------------------CC----CCCCCCCcEEEEEe
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLA----HLGISTHLVFD---------------------MT----TPPISSNDLLIASA 99 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~----~lg~~~~~~~d---------------------~~----~~~~~~~DlvI~iS 99 (204)
.+-|+++++..+.+++.++..-.. ..|+++..++- .. ...-.++.+.|+..
T Consensus 81 p~~i~v~~tc~~~liGdDi~~v~~~~~~~~~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~ 160 (399)
T cd00316 81 PKVIFVYTTCTTELIGDDIEAVAKEASKEIGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGG 160 (399)
T ss_pred CCEEEEecCchhhhhccCHHHHHHHHHHhhCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECC
Confidence 478999999999988888765443 35677666431 01 12335667777776
Q ss_pred CCCCCHHHHHHHHHHHHcCCeEEEEecCCCC-cchhh--ccCeEEEeC
Q 028777 100 GPGGFSTVDAICSRARSYGARVLLLTAQPES-GSSVK--HASVVAYVP 144 (204)
Q Consensus 100 ~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s-~~l~~--~ad~~l~~~ 144 (204)
......+..++.+..++.|+++..+-+...+ ..+.+ -|..++.+.
T Consensus 161 ~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~ 208 (399)
T cd00316 161 YNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNLVLC 208 (399)
T ss_pred CCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEEEec
Confidence 6665446777777788899999988755333 02333 466677664
No 376
>PRK06756 flavodoxin; Provisional
Probab=43.04 E-value=54 Score=23.97 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=29.9
Q ss_pred HHHHHHHHHh----cCCcEEEEecchh-----HHHHHHHHHHHhhcCCeEEE
Q 028777 38 MVAELTNTAT----QKGSVFLYGVGRE-----GLMLKALCMRLAHLGISTHL 80 (204)
Q Consensus 38 ~l~~~~~~i~----~a~~I~i~G~G~S-----~~~a~~~~~~l~~lg~~~~~ 80 (204)
.+..+.+.+. +.+++.+||+|.+ ....+.+..+|...|..+..
T Consensus 68 ~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 68 DFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcC
Confidence 4555555553 5688999999553 46677788888888866554
No 377
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=42.98 E-value=63 Score=25.05 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=31.7
Q ss_pred CcEEEEEeCCCCCH----HHHHHHHHHHHcCCeEE--EEecCCCCcchhhccC
Q 028777 92 NDLLIASAGPGGFS----TVDAICSRARSYGARVL--LLTAQPESGSSVKHAS 138 (204)
Q Consensus 92 ~DlvI~iS~sG~t~----~~~~~~~~ak~~g~~vI--~iT~~~~s~~l~~~ad 138 (204)
.-++|+++-+..+. .+.++++.+|++|+++. +|-..... .|..+|.
T Consensus 109 ~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~~~-el~~ia~ 160 (192)
T cd01473 109 PKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAASEN-KLKLLAG 160 (192)
T ss_pred CeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccccHH-HHHHhcC
Confidence 45889998866542 47788999999999865 55444444 5555554
No 378
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=42.94 E-value=44 Score=25.48 Aligned_cols=33 Identities=12% Similarity=0.313 Sum_probs=28.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 95 LIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 95 vI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
++..|.||.|.=+.++++.++++|.++-.|=..
T Consensus 7 ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 7 IVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred EEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 567899999999999999999999987766433
No 379
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=42.79 E-value=58 Score=27.14 Aligned_cols=83 Identities=20% Similarity=0.148 Sum_probs=54.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec-C-CC--------------------CCCCCCCcEEEEEeCCCCCHH
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF-D-MT--------------------TPPISSNDLLIASAGPGGFST 106 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~-d-~~--------------------~~~~~~~DlvI~iS~sG~t~~ 106 (204)
..+|.|.|.| .++..+++.|..-|..+..++ | .. ......-|++|+-.--+.+.+
T Consensus 3 ~~~v~IvG~G---liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGLG---LMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECCc---hHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHH
Confidence 3577888866 477778888888888776543 1 00 122334588777776666666
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCcchhh
Q 028777 107 VDAICSRARSYGARVLLLTAQPESGSSVK 135 (204)
Q Consensus 107 ~~~~~~~ak~~g~~vI~iT~~~~s~~l~~ 135 (204)
+++-+..--+.|+.+.=+|+.+.. ++..
T Consensus 80 ~l~~l~~~l~~g~iv~Dv~S~K~~-v~~a 107 (279)
T COG0287 80 VLKELAPHLKKGAIVTDVGSVKSS-VVEA 107 (279)
T ss_pred HHHHhcccCCCCCEEEecccccHH-HHHH
Confidence 665555434568888888888877 6643
No 380
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=42.70 E-value=45 Score=25.98 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=0.0
Q ss_pred EEEEecchhH--HHHHHHHHHHhhcCCeEEEecC---------------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q 028777 52 VFLYGVGREG--LMLKALCMRLAHLGISTHLVFD---------------MTTPPISSNDLLIASAGPGGFSTVDAICSRA 114 (204)
Q Consensus 52 I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d---------------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~a 114 (204)
+|+-|.++|. .-|+.+...+...+....+... .......++.++|.-|..|.....+ +
T Consensus 3 lYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~L-----a 77 (187)
T PF05728_consen 3 LYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYL-----A 77 (187)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHH-----H
Q ss_pred HHcCCeEEEE
Q 028777 115 RSYGARVLLL 124 (204)
Q Consensus 115 k~~g~~vI~i 124 (204)
...|++.|+|
T Consensus 78 ~~~~~~avLi 87 (187)
T PF05728_consen 78 ERYGLPAVLI 87 (187)
T ss_pred HHhCCCEEEE
No 381
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=42.69 E-value=1.2e+02 Score=26.04 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHhhcCCeEEEecC-CCCCCCC--CCcEEEE----EeCCC---CCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 68 CMRLAHLGISTHLVFD-MTTPPIS--SNDLLIA----SAGPG---GFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 68 ~~~l~~lg~~~~~~~d-~~~~~~~--~~DlvI~----iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+..|...|+++..+.| .....+. +=|.||+ +...| +.--+..++-.||.+|+|++..+..
T Consensus 199 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~ 268 (331)
T TIGR00512 199 AWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPT 268 (331)
T ss_pred HHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccc
Confidence 4566777899998888 2222233 4466665 22334 3334566777899999999988653
No 382
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=42.64 E-value=52 Score=27.37 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=39.7
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
.+.+.|++|++-.|........+.+.++++|+++|.|- ...+ +....+|+.|.-
T Consensus 211 ~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN-~~~t-~~~~~~~~~i~g 264 (285)
T PRK05333 211 ALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALN-LGRT-RADPLLTLKVEA 264 (285)
T ss_pred HHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEEC-CCCC-CCCcceeEEEeC
Confidence 34678999999888887766677888999999777776 4455 666666665543
No 383
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=42.63 E-value=1e+02 Score=23.39 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=36.3
Q ss_pred cEEEEecchhH--HHHHHHHHHHhhcCCeEEEecC--------------------CCCCCCCCCcEEEEEeC
Q 028777 51 SVFLYGVGREG--LMLKALCMRLAHLGISTHLVFD--------------------MTTPPISSNDLLIASAG 100 (204)
Q Consensus 51 ~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d--------------------~~~~~~~~~DlvI~iS~ 100 (204)
.|.+.|.|.++ .+++-+..-+.+.|+++....+ ...+...+-|++++++.
T Consensus 2 ~i~i~G~gGqGv~tag~ila~aa~~~G~~v~~~~~ygs~~RGG~~~~~vris~~~i~s~~~~~~D~lval~~ 73 (170)
T PRK08338 2 QIRFAGIGGQGVVLAGVILGEAAAIEGLNVLQTQDYSSASRGGHSIADVIISKEPIYDVMVTKADVLVALHQ 73 (170)
T ss_pred eEEEEEECcHHHHHHHHHHHHHHHHcCCCEEEccccChhhcCCeEEEEEEEcCccccCCCCCCCCEEEEcCH
Confidence 47889999977 4677788888888888887543 12223566799988877
No 384
>PRK10785 maltodextrin glucosidase; Provisional
Probab=42.54 E-value=97 Score=28.75 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=45.3
Q ss_pred EEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCC----CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEE
Q 028777 53 FLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPI----SSNDLLIASAGPGGFSTVDAICSRARSYGARVL 122 (204)
Q Consensus 53 ~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~----~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI 122 (204)
-++|....++..+ + -.|..||+.++.+++...... ...|-.=+=..=|...+..++++.|+++|++||
T Consensus 172 ~f~GGDl~GI~~k-L-dYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVi 243 (598)
T PRK10785 172 TFYGGDLDGISEK-L-PYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLV 243 (598)
T ss_pred cccCcCHHHHHHH-H-HHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 4556444555444 3 567889999999987322211 122333333444777899999999999999998
No 385
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=42.49 E-value=1.2e+02 Score=26.99 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=43.9
Q ss_pred CcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-CCC---CCCCCCcEEEEEeCC-CCCHHHHHHHHHHHH--cCCeEE
Q 028777 50 GSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-MTT---PPISSNDLLIASAGP-GGFSTVDAICSRARS--YGARVL 122 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-~~~---~~~~~~DlvI~iS~s-G~t~~~~~~~~~ak~--~g~~vI 122 (204)
.+|.++++|....+.++ |...|..+.++.. ... ..+++ |- |++|.+ |.-.+.-...+..++ .+.|++
T Consensus 241 ~~IvviD~G~K~nIlr~----L~~~G~~v~VvP~~~~~~ei~~~~p-DG-IiLSnGPGDP~~~~~~ie~ik~l~~~iPIl 314 (415)
T PLN02771 241 YHVIAYDFGIKHNILRR----LASYGCKITVVPSTWPASEALKMKP-DG-VLFSNGPGDPSAVPYAVETVKELLGKVPVF 314 (415)
T ss_pred CEEEEECCChHHHHHHH----HHHcCCeEEEECCCCCHHHHhhcCC-CE-EEEcCCCCChhHhhHHHHHHHHHHhCCCEE
Confidence 47999999997666554 4556888887653 110 11222 33 566666 555444444444443 478999
Q ss_pred EEecCCC
Q 028777 123 LLTAQPE 129 (204)
Q Consensus 123 ~iT~~~~ 129 (204)
+|+-...
T Consensus 315 GICLGhQ 321 (415)
T PLN02771 315 GICMGHQ 321 (415)
T ss_pred EEcHHHH
Confidence 9985443
No 386
>PRK13566 anthranilate synthase; Provisional
Probab=42.29 E-value=1.6e+02 Score=28.07 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=50.1
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-CCC--CCCCCCcEEEEEeCCCCCH--HHHHHHHHHHHcCCeEE
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-MTT--PPISSNDLLIASAGPGGFS--TVDAICSRARSYGARVL 122 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-~~~--~~~~~~DlvI~iS~sG~t~--~~~~~~~~ak~~g~~vI 122 (204)
+..+|.++-.|.+. ...+...|...|..+..+.. ... ....+=|.+|+.--.|... ...+.++.+.+++.|++
T Consensus 525 ~g~~IlvID~~dsf--~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iPIL 602 (720)
T PRK13566 525 EGKRVLLVDHEDSF--VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFDCKATIDAALARNLPIF 602 (720)
T ss_pred CCCEEEEEECCCch--HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhhCCcHHHHHHHHHCCCcEE
Confidence 56799999999543 34555666778988877653 111 1112235544433333322 36788888889999999
Q ss_pred EEecCCC
Q 028777 123 LLTAQPE 129 (204)
Q Consensus 123 ~iT~~~~ 129 (204)
+|+-...
T Consensus 603 GIClG~Q 609 (720)
T PRK13566 603 GVCLGLQ 609 (720)
T ss_pred EEehhHH
Confidence 9996544
No 387
>PRK05569 flavodoxin; Provisional
Probab=42.22 E-value=49 Score=23.90 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=32.2
Q ss_pred CcEEEEEeCCCCCHHHHHHHHH-HHHcCCeEEEEecCCCCcchh--hccCeEEEe
Q 028777 92 NDLLIASAGPGGFSTVDAICSR-ARSYGARVLLLTAQPESGSSV--KHASVVAYV 143 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~-ak~~g~~vI~iT~~~~s~~l~--~~ad~~l~~ 143 (204)
+-+++.+|.+|+|+.+.+.+.. +++.|+.+ -+.+-.+. +.. .-+|..+..
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v-~~~~~~~~-~~~~~~~~d~iilg 55 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEV-TIKHVADA-KVEDVLEADAVAFG 55 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeE-EEEECCcC-CHHHHhhCCEEEEE
Confidence 4578999999999999888644 67778754 33333333 222 346655544
No 388
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=42.19 E-value=2.2e+02 Score=24.34 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=24.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHHcCCeEE
Q 028777 93 DLLIASAGPGGFSTVDAICSRARSYGARVL 122 (204)
Q Consensus 93 DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI 122 (204)
.++++....|...++-++++.|+++|+.+|
T Consensus 121 k~i~~~~~~G~~~~~~~i~~la~~~~i~vI 150 (375)
T PRK11706 121 RAIVPVHYAGVACEMDTIMALAKKHNLFVV 150 (375)
T ss_pred eEEEEeCCCCCccCHHHHHHHHHHcCCEEE
Confidence 566667777988888899999999998765
No 389
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=42.15 E-value=1.3e+02 Score=26.79 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=45.4
Q ss_pred HhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC--CC--------------CCCCCCCcEEEEEeCCCCCHHHHH
Q 028777 46 ATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD--MT--------------TPPISSNDLLIASAGPGGFSTVDA 109 (204)
Q Consensus 46 i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d--~~--------------~~~~~~~DlvI~iS~sG~t~~~~~ 109 (204)
....++|.++|.|. +++..+.++..+|.++.+... .. ...+..-|++|. .+|. +.+++
T Consensus 209 ~l~Gk~VlViG~G~---IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~--aTG~-~~vI~ 282 (425)
T PRK05476 209 LIAGKVVVVAGYGD---VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVT--ATGN-KDVIT 282 (425)
T ss_pred CCCCCEEEEECCCH---HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEE--CCCC-HHHHH
Confidence 34678999999996 667777888888988777542 00 001234576654 5565 44554
Q ss_pred H-HHHHHHcCCeEEEEecCC
Q 028777 110 I-CSRARSYGARVLLLTAQP 128 (204)
Q Consensus 110 ~-~~~ak~~g~~vI~iT~~~ 128 (204)
. .-..-+.|+.++-+...+
T Consensus 283 ~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 283 AEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred HHHHhcCCCCCEEEEcCCCC
Confidence 3 223344566555555443
No 390
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=42.01 E-value=53 Score=25.33 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 104 FSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 104 t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
...+.++++..+++|.++|.+|..... .+.+.||.++.+..
T Consensus 147 ~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~~~d~v~~l~~ 187 (194)
T cd03213 147 ALQVMSLLRRLADTGRTIICSIHQPSS-EIFELFDKLLLLSQ 187 (194)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCchH-HHHHhcCEEEEEeC
Confidence 356677777777778888888877654 57788998887754
No 391
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=41.82 E-value=1.8e+02 Score=26.80 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCcE-EEEecchhHHHHHHHHHHHhhcCCeEEE
Q 028777 35 LDIMVAELTNTATQKGSV-FLYGVGREGLMLKALCMRLAHLGISTHL 80 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I-~i~G~G~S~~~a~~~~~~l~~lg~~~~~ 80 (204)
.++.+++++++|.+|+|. ++.|.|.. .....+.....++|.++..
T Consensus 194 ~~~~i~~a~~~L~~AkrPvi~~G~g~~-~a~~~l~~lae~~~~PV~t 239 (597)
T PRK08273 194 YDEDLRRAAEVLNAGRKVAILVGAGAL-GATDEVIAVAERLGAGVAK 239 (597)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECcchH-hHHHHHHHHHHHhCCceee
Confidence 466899999999999865 55565654 3444455555678888775
No 392
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=41.79 E-value=1.3e+02 Score=25.91 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=41.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCC-CCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDM-TTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~-~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
+.++|.+.|.|. .+..+...+.++|..++.++.. ..+...-.|-.+.++. .+.-.+.+.+++.++..|..+.
T Consensus 11 ~~~~ilIiG~g~---~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~----~d~~~l~~~~~~~~id~vi~~~ 83 (395)
T PRK09288 11 SATRVMLLGSGE---LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDM----LDGDALRAVIEREKPDYIVPEI 83 (395)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCC----CCHHHHHHHHHHhCCCEEEEee
Confidence 346899999885 4555666788899998887641 1111111233333332 1233455666777777665553
Q ss_pred C
Q 028777 127 Q 127 (204)
Q Consensus 127 ~ 127 (204)
.
T Consensus 84 e 84 (395)
T PRK09288 84 E 84 (395)
T ss_pred C
Confidence 3
No 393
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=41.72 E-value=2.1e+02 Score=23.89 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 108 DAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 108 ~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
..+++.+.+.|+++..|+++.-. .+-+.+|.+| +.++.
T Consensus 150 ~~la~eL~~~GI~vtlI~Dsa~~-~~m~~vd~Vi-vGAD~ 187 (275)
T PRK08335 150 LALANELEFLGIEFEVITDAQLG-LFAKEATLAL-VGADN 187 (275)
T ss_pred HHHHHHHHHCCCCEEEEeccHHH-HHHHhCCEEE-ECccE
Confidence 44688889999999999988766 6777799887 44443
No 394
>PLN02361 alpha-amylase
Probab=41.48 E-value=69 Score=28.20 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=51.2
Q ss_pred HhcCCcEEEEecchh-------HHHHHHHHHHHhhcCCeEEEecCCCCC----CCCCCcEEEEEeCCCCCHHHHHHHHHH
Q 028777 46 ATQKGSVFLYGVGRE-------GLMLKALCMRLAHLGISTHLVFDMTTP----PISSNDLLIASAGPGGFSTVDAICSRA 114 (204)
Q Consensus 46 i~~a~~I~i~G~G~S-------~~~a~~~~~~l~~lg~~~~~~~d~~~~----~~~~~DlvI~iS~sG~t~~~~~~~~~a 114 (204)
....+.|.+=|.--- ..+.+.+. .|..+|+.++.+++.... --.+.|..=+=+.-|...++.++++.|
T Consensus 7 ~~~~~~v~lQ~F~W~~~~~~~w~~i~~kl~-~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~ 85 (401)
T PLN02361 7 IRNGREILLQAFNWESHKHDWWRNLEGKVP-DLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKM 85 (401)
T ss_pred hcCCCcEEEEEEeccCCccHHHHHHHHHHH-HHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHH
Confidence 334566666665331 12333333 478899999988762211 123455555568889999999999999
Q ss_pred HHcCCeEEE
Q 028777 115 RSYGARVLL 123 (204)
Q Consensus 115 k~~g~~vI~ 123 (204)
+++|+++|+
T Consensus 86 h~~gi~vi~ 94 (401)
T PLN02361 86 KQYNVRAMA 94 (401)
T ss_pred HHcCCEEEE
Confidence 999999984
No 395
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=41.45 E-value=1.1e+02 Score=24.07 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=36.0
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecC------CCCCCCCCCcEEEEEeCCCCCHHHHHHHHH
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFD------MTTPPISSNDLLIASAGPGGFSTVDAICSR 113 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ 113 (204)
+++.+++....- ....... .-++.+...++ .....+..+++.|.+|.+|.++.+-..++.
T Consensus 73 lViaaT~d~elN-~~i~~~a-~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~ 138 (202)
T PRK06718 73 LVIAATNDPRVN-EQVKEDL-PENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRD 138 (202)
T ss_pred EEEEcCCCHHHH-HHHHHHH-HhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHH
Confidence 555566664322 2222222 22455655543 233456889999999999999987666544
No 396
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=41.29 E-value=1.6e+02 Score=22.67 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=41.6
Q ss_pred cEEEEecchhH--HHHHHHHHHHhhcCCeEEEecC------------------CCCC--CCCCCcEEEEEeCCCCCHHHH
Q 028777 51 SVFLYGVGREG--LMLKALCMRLAHLGISTHLVFD------------------MTTP--PISSNDLLIASAGPGGFSTVD 108 (204)
Q Consensus 51 ~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d------------------~~~~--~~~~~DlvI~iS~sG~t~~~~ 108 (204)
.|.+.|.|.++ .+++-+..-+.+.|+++..... ...+ ...+-|++|++.. .++.
T Consensus 2 ~i~i~G~gGqGv~tag~ila~aa~~~G~~v~~~~~yg~~~RGG~~~s~vris~i~sp~~~~~~~Dilvald~----~~~~ 77 (189)
T TIGR03334 2 NIVITGVGGQGIILASVIIGEAALKAGLPVRAAETHGMAQRGGSVINHIRIGEVYGSMIPEGGADLLLAFEP----LEAL 77 (189)
T ss_pred eEEEEeECchHHHHHHHHHHHHHHHcCCCeEeeeccCccccCCeEEEEEEEccccCCccCCCCCCEEEEeCH----HHHH
Confidence 47899999977 4677788888888888876543 1111 2256689998876 4444
Q ss_pred HHHHHHHHc
Q 028777 109 AICSRARSY 117 (204)
Q Consensus 109 ~~~~~ak~~ 117 (204)
...+..+..
T Consensus 78 ~~~~~l~~~ 86 (189)
T TIGR03334 78 RYLPYLSEG 86 (189)
T ss_pred HHHHhcCCC
Confidence 455555444
No 397
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=41.28 E-value=50 Score=23.68 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCcEEEEecchhHH--HHHHHHHHHhhcCCeEEEec
Q 028777 39 VAELTNTATQKGSVFLYGVGREGL--MLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 39 l~~~~~~i~~a~~I~i~G~G~S~~--~a~~~~~~l~~lg~~~~~~~ 82 (204)
.+.+.+.+.....|.++|+|.... +-..+...|...|+.+...+
T Consensus 48 ~~~l~~ll~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~ 93 (117)
T cd05126 48 PEELEELLEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcC
Confidence 444555566677899999999853 56677778888998887743
No 398
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=41.23 E-value=1.6e+02 Score=22.60 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEec-chhHHHHHHHHHHHhhcCCeEEEecC------------CCCCCCCCCcEEEEEeCCC
Q 028777 36 DIMVAELTNTATQKGSVFLYGV-GREGLMLKALCMRLAHLGISTHLVFD------------MTTPPISSNDLLIASAGPG 102 (204)
Q Consensus 36 ~~~l~~~~~~i~~a~~I~i~G~-G~S~~~a~~~~~~l~~lg~~~~~~~d------------~~~~~~~~~DlvI~iS~sG 102 (204)
.+.++++.+.+.+++.++++.. |-+..-...+..+|..-|....+.-. ......-.|.++|++|..
T Consensus 9 ~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~~e~l~~~l~Gp~ai~fs~~- 87 (175)
T COG0244 9 KELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAGLEGLDDLLKGPTAIAFSNE- 87 (175)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcchhhHHHhccCCeEEEEecC-
Confidence 4588999999999999999998 66888999999999987766666543 112344578899999985
Q ss_pred CCHHHHHHHHHHHHc
Q 028777 103 GFSTVDAICSRARSY 117 (204)
Q Consensus 103 ~t~~~~~~~~~ak~~ 117 (204)
+..++.+++....+.
T Consensus 88 dp~~~~K~~~~f~k~ 102 (175)
T COG0244 88 DPVAAAKLLKDFAKE 102 (175)
T ss_pred CHHHHHHHHHHHhhh
Confidence 667777777665444
No 399
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=41.16 E-value=36 Score=27.54 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 101 PGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 101 sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
..-.+.++++++.++++|.+|+.+|+.+..
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~ 148 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEE 148 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 345678899999999999999999999765
No 400
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.15 E-value=3.3e+02 Score=26.10 Aligned_cols=54 Identities=2% Similarity=0.025 Sum_probs=32.3
Q ss_pred CCCcEEEEEe-CCCCCHH-----HHHHHHHHHHcCCeEEEEecCCCCcchh---hccCeEEEeCC
Q 028777 90 SSNDLLIASA-GPGGFST-----VDAICSRARSYGARVLLLTAQPESGSSV---KHASVVAYVPA 145 (204)
Q Consensus 90 ~~~DlvI~iS-~sG~t~~-----~~~~~~~ak~~g~~vI~iT~~~~s~~l~---~~ad~~l~~~~ 145 (204)
..-|++|++. ....+.. ...+++..+++|+++|.|-.. .+ ..+ ..||..|.+..
T Consensus 210 ~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr-~t-~ta~~~~~Ad~wlpIrP 272 (735)
T cd02758 210 DNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPV-LP-NTTSAAGENIRWVPIKP 272 (735)
T ss_pred hhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCC-CC-ccccccccCCEEECCCC
Confidence 3446666664 4344433 233333333589999998755 44 466 88999887743
No 401
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=41.13 E-value=74 Score=25.53 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=18.2
Q ss_pred EEEEecchhH--HHHHHHHHHHhhcCCeEEEec
Q 028777 52 VFLYGVGREG--LMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 52 I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~ 82 (204)
|++.|..+|| ..|+.++..|..-|+++..++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 5666665544 366666666665566555543
No 402
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=41.12 E-value=1.4e+02 Score=25.65 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHhhcCCeEEEecC-CCCCCCC--CCcEEEE----EeCCC---CCHHHHHHHHHHHHcCCeEEEEec
Q 028777 68 CMRLAHLGISTHLVFD-MTTPPIS--SNDLLIA----SAGPG---GFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 68 ~~~l~~lg~~~~~~~d-~~~~~~~--~~DlvI~----iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
+..|...|+++..+.| .....+. +=|.||+ +...| +.--+..++-.||.+|+|++....
T Consensus 189 a~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 189 AWELAQEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHHHCCCCEEEEcccHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecc
Confidence 5677788999999888 2222232 3466665 34445 344456778889999999999875
No 403
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=41.05 E-value=19 Score=31.35 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=62.1
Q ss_pred HHHHHHHHHh-cCCcEEEEecchhHHHHHHHH-----HHHhhcCCeEEEecC---------CCCC--CCCCCcEEEEEeC
Q 028777 38 MVAELTNTAT-QKGSVFLYGVGREGLMLKALC-----MRLAHLGISTHLVFD---------MTTP--PISSNDLLIASAG 100 (204)
Q Consensus 38 ~l~~~~~~i~-~a~~I~i~G~G~S~~~a~~~~-----~~l~~lg~~~~~~~d---------~~~~--~~~~~DlvI~iS~ 100 (204)
....+++.++ ....+.++|.|+..+.+.-+. ..|..+|+- .++.. .... .-.+-|++|.+-+
T Consensus 13 ~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~-Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~ 91 (373)
T PF02684_consen 13 HGARLIRALKARDPDIEFYGVGGPRMQAAGVESLFDMEELSVMGFV-EVLKKLPKLKRLFRKLVERIKEEKPDVVILIDY 91 (373)
T ss_pred HHHHHHHHHHhhCCCcEEEEEechHHHhCCCceecchHHhhhccHH-HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4445566665 456899999999887665332 233344431 11110 0111 2346699999999
Q ss_pred CCCCHHHHHHHHHHHHcCCe--EEEEecC--------CCCcchhhccCeEEEe
Q 028777 101 PGGFSTVDAICSRARSYGAR--VLLLTAQ--------PESGSSVKHASVVAYV 143 (204)
Q Consensus 101 sG~t~~~~~~~~~ak~~g~~--vI~iT~~--------~~s~~l~~~ad~~l~~ 143 (204)
+|-+ +.+++.+|++|.+ ||-..+. --. .+++++|+.+.+
T Consensus 92 pgFN---lrlak~lk~~~~~~~viyYI~PqvWAWr~~R~~-~i~~~~D~ll~i 140 (373)
T PF02684_consen 92 PGFN---LRLAKKLKKRGIPIKVIYYISPQVWAWRPGRAK-KIKKYVDHLLVI 140 (373)
T ss_pred CCcc---HHHHHHHHHhCCCceEEEEECCceeeeCccHHH-HHHHHHhheeEC
Confidence 9998 4566788889988 6644432 112 677889987766
No 404
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=40.70 E-value=1.7e+02 Score=22.76 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=25.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
+.++|.+.|.|. ++..++.+|...|..+...+
T Consensus 27 ~gk~v~I~G~G~---vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 27 EGKTVAVQGLGK---VGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEc
Confidence 457899999994 77788888888898887543
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.56 E-value=1.6e+02 Score=25.43 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=43.9
Q ss_pred EEEEec---chhHHHHHHHHHHHhhcCCeEEEe-cCCC--------CCCCCCCcEEEEEeCCCCCHH--HHHHHHHHHHc
Q 028777 52 VFLYGV---GREGLMLKALCMRLAHLGISTHLV-FDMT--------TPPISSNDLLIASAGPGGFST--VDAICSRARSY 117 (204)
Q Consensus 52 I~i~G~---G~S~~~a~~~~~~l~~lg~~~~~~-~d~~--------~~~~~~~DlvI~iS~sG~t~~--~~~~~~~ak~~ 117 (204)
|.++|. |.+..+|+ ++++|..-|+.+... .|.+ .-....-.+=++-...|..+. +.+++++|+.+
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar 220 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKAR 220 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHc
Confidence 345554 66777776 677788889988875 3411 001111122222213454444 47889999999
Q ss_pred CCeEEEEec
Q 028777 118 GARVLLLTA 126 (204)
Q Consensus 118 g~~vI~iT~ 126 (204)
|..++.+=.
T Consensus 221 ~~DvvliDT 229 (340)
T COG0552 221 GIDVVLIDT 229 (340)
T ss_pred CCCEEEEeC
Confidence 999887743
No 406
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=40.42 E-value=1.1e+02 Score=27.16 Aligned_cols=75 Identities=20% Similarity=0.157 Sum_probs=44.3
Q ss_pred HhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec-CC----------C-----CCCCCCCcEEEEEeCCCCCHHHHH
Q 028777 46 ATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF-DM----------T-----TPPISSNDLLIASAGPGGFSTVDA 109 (204)
Q Consensus 46 i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~-d~----------~-----~~~~~~~DlvI~iS~sG~t~~~~~ 109 (204)
....++|.++|.|. ++...+..+..+|.++.... |. . ...+...|++| +.+|. +.++.
T Consensus 192 ~l~Gk~VvViG~G~---IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVI--taTG~-~~vI~ 265 (406)
T TIGR00936 192 LIAGKTVVVAGYGW---CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFI--TATGN-KDVIR 265 (406)
T ss_pred CCCcCEEEEECCCH---HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEE--ECCCC-HHHHH
Confidence 35689999999998 55556677778888877753 20 0 00123557764 56664 55554
Q ss_pred H-HHHHHHcCCeEEEEec
Q 028777 110 I-CSRARSYGARVLLLTA 126 (204)
Q Consensus 110 ~-~~~ak~~g~~vI~iT~ 126 (204)
. .-.+-+.|+.++-+..
T Consensus 266 ~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGH 283 (406)
T ss_pred HHHHhcCCCCcEEEEECC
Confidence 3 3333445665554443
No 407
>PRK10444 UMP phosphatase; Provisional
Probab=40.35 E-value=2e+02 Score=23.30 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCe
Q 028777 40 AELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGIS 77 (204)
Q Consensus 40 ~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~ 77 (204)
.++.+.+++.+.-+++-+|.+....+.+..+|..+|++
T Consensus 23 ~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 23 AEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 35566677777777777777776777788888887764
No 408
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=40.10 E-value=1.3e+02 Score=26.61 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred CcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC---CCCCCCCCCcEEEEEeCCCCCHHHHH---HHHHHHHcCCeEE
Q 028777 50 GSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD---MTTPPISSNDLLIASAGPGGFSTVDA---ICSRARSYGARVL 122 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d---~~~~~~~~~DlvI~iS~sG~t~~~~~---~~~~ak~~g~~vI 122 (204)
+||.+.|.|.. |..+...+.++|+.++.++. .......--|-.+.+.-........+ +++.|++.++..|
T Consensus 3 kkili~g~g~~---~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I 78 (449)
T TIGR00514 3 DKILIANRGEI---ALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAI 78 (449)
T ss_pred ceEEEeCCCHH---HHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEE
No 409
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=40.06 E-value=48 Score=25.82 Aligned_cols=38 Identities=11% Similarity=0.029 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 105 STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 105 ~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
..+.+.++..++.|.++|.+|...+ .+.++||.++.+.
T Consensus 175 ~~l~~~l~~~~~~~~tii~vsH~~~--~~~~~~d~i~~l~ 212 (216)
T TIGR00960 175 RDIMRLFEEFNRRGTTVLVATHDIN--LVETYRHRTLTLS 212 (216)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHH--HHHHhCCEEEEEe
Confidence 4566777777667888777776544 4778899888774
No 410
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=40.05 E-value=81 Score=23.62 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=52.6
Q ss_pred CcEEEEecchhH--HHHHHHHHHHhhcCCeEEEecCC-------CCCCCCCCcEEEEEeCCCCCHHH-HHHHHHHHHcCC
Q 028777 50 GSVFLYGVGREG--LMLKALCMRLAHLGISTHLVFDM-------TTPPISSNDLLIASAGPGGFSTV-DAICSRARSYGA 119 (204)
Q Consensus 50 ~~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d~-------~~~~~~~~DlvI~iS~sG~t~~~-~~~~~~ak~~g~ 119 (204)
.||.+.=.|..+ .-++.+.+.|...|+.++...-. ....-..-|++.+.|.+|...+. -.+.+.++++|.
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCC
Confidence 456666567654 35667788899999999986531 11223556899999999987766 556688999998
Q ss_pred eEEE
Q 028777 120 RVLL 123 (204)
Q Consensus 120 ~vI~ 123 (204)
.=|.
T Consensus 93 ~~i~ 96 (143)
T COG2185 93 EDIL 96 (143)
T ss_pred cceE
Confidence 7666
No 411
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=40.03 E-value=1.9e+02 Score=22.90 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCcEEEEecchhH---HHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREG---LMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRA 114 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~---~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~a 114 (204)
..+.+++.|...++|.++|..... .-.+-|...+...|+.+....+.......+.|.+++.|- .-...+++.+
T Consensus 106 a~~~L~~~~~G~~~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~ai~~~~d----~~A~g~~~~l 181 (247)
T cd06276 106 ALQEGLEKLKKYKKLILVFPNKTAIPKEIKRGFERFCKDYNIETEIINDYENREIEKGDLYIILSD----TDLVFLIKKA 181 (247)
T ss_pred HHHHHHHHhcCCCEEEEEecCccHhHHHHHHHHHHHHHHcCCCcccccccchhhccCCcEEEEeCH----HHHHHHHHHH
Confidence 334444434457899888643321 112234455666676543211111112234566555432 3455667788
Q ss_pred HHcCCe---EEEEecCCCCcchhhccCeEEEe
Q 028777 115 RSYGAR---VLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 115 k~~g~~---vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
++.|.. -|+|.+.++. ++++...-.|.+
T Consensus 182 ~~~g~~iP~disvigfd~~-~~~~~~~p~ltt 212 (247)
T cd06276 182 RESGLLLGKDIGIISYNDT-PLKEILRNGITT 212 (247)
T ss_pred HHcCCcCCceeEEEEecCc-hhhhccCCCceE
Confidence 888874 6788888888 888877655544
No 412
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=40.00 E-value=1.6e+02 Score=22.82 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHc-CCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 91 SNDLLIASAGPGGFSTVDAICSRARSY-GARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ak~~-g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
-+-++++-|.-|. .+-++++..|+. |+++|++. ..+| .-+.||+++.=|
T Consensus 142 v~iLVLAGslMGG--kIteaVk~lr~~hgI~VISL~-M~GS--VpdVADlVvtDP 191 (218)
T COG1707 142 VGILVLAGSLMGG--KITEAVKELREEHGIPVISLN-MFGS--VPDVADLVVTDP 191 (218)
T ss_pred ceeEEEecccccc--hHHHHHHHHHHhcCCeEEEec-cCCC--CcchhheeecCc
Confidence 4567777777775 377788887775 99999998 4454 678899877444
No 413
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=39.96 E-value=98 Score=20.28 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
.++..+..+...++|++|+... .-+...+..|..+|+++..+.
T Consensus 40 ~~~~~~~~~~~~~~vvl~c~~g--~~a~~~a~~L~~~G~~v~~l~ 82 (90)
T cd01524 40 ELRDRLNELPKDKEIIVYCAVG--LRGYIAARILTQNGFKVKNLD 82 (90)
T ss_pred HHHHHHHhcCCCCcEEEEcCCC--hhHHHHHHHHHHCCCCEEEec
Confidence 3444455566778898887542 234445567788888666554
No 414
>PRK08105 flavodoxin; Provisional
Probab=39.86 E-value=77 Score=23.52 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=32.1
Q ss_pred EEEEEeCCCCCHHHHHHH-HHHHHcCCeEEEEecCCCCcchhhc-cCeEEEe
Q 028777 94 LLIASAGPGGFSTVDAIC-SRARSYGARVLLLTAQPESGSSVKH-ASVVAYV 143 (204)
Q Consensus 94 lvI~iS~sG~t~~~~~~~-~~ak~~g~~vI~iT~~~~s~~l~~~-ad~~l~~ 143 (204)
+++.-|.+|+++.+.+.+ +.+++.|..+..+....-. ++... .+.++.+
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~vi~~ 55 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELS-DWQPYQDELVLVV 55 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCC-chhcccCCeEEEE
Confidence 577799999999997655 5577888887666544333 44322 3555444
No 415
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=39.66 E-value=1.7e+02 Score=22.32 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=46.7
Q ss_pred EEEEe--cchhHHHHHHHHHHHhhcCCeEEEec--CCCCCCCCCCcEEEEEeCC---CCCHHHHHHHHHH--HHcCCeEE
Q 028777 52 VFLYG--VGREGLMLKALCMRLAHLGISTHLVF--DMTTPPISSNDLLIASAGP---GGFSTVDAICSRA--RSYGARVL 122 (204)
Q Consensus 52 I~i~G--~G~S~~~a~~~~~~l~~lg~~~~~~~--d~~~~~~~~~DlvI~iS~s---G~t~~~~~~~~~a--k~~g~~vI 122 (204)
+.+|+ .|.+.-+|+.++..|.. |..+.... +.....+.+-|.+|+.|-. +-.+.+.+.++.. .-+|-++.
T Consensus 4 lIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~~~l~~K~v~ 82 (177)
T PRK11104 4 LILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSALYKFVKKHATQLNQMPSA 82 (177)
T ss_pred EEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHHHHHHHHHHHHHhCCCeEE
Confidence 44555 48899999999999987 87665543 2222345566777777643 3444555555442 23566777
Q ss_pred EEecC
Q 028777 123 LLTAQ 127 (204)
Q Consensus 123 ~iT~~ 127 (204)
.++..
T Consensus 83 ~F~v~ 87 (177)
T PRK11104 83 FFSVN 87 (177)
T ss_pred EEEec
Confidence 77744
No 416
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=39.32 E-value=2.9e+02 Score=24.90 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
.+.++|+| +|+..|-+++..+ .++++|+++|=-|+..-+
T Consensus 174 ~v~~gdvV-IirAHGvs~~~~~---~l~~kg~~IVDaTCP~V~ 212 (460)
T PLN02821 174 VVGEGDVV-ILPAFGASVEEMQ---TLNDKNVQIVDTTCPWVS 212 (460)
T ss_pred cCCCCCEE-EEeCCCCCHHHHH---HHHHCCCeEEecCCcchH
Confidence 45567755 6677799887764 467778887766665444
No 417
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=39.27 E-value=1.7e+02 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCcEEEE-ecchh----HHHHHHHHHHHhhcCCeEEE
Q 028777 37 IMVAELTNTATQKGSVFLY-GVGRE----GLMLKALCMRLAHLGISTHL 80 (204)
Q Consensus 37 ~~l~~~~~~i~~a~~I~i~-G~G~S----~~~a~~~~~~l~~lg~~~~~ 80 (204)
-..+++++.+..|++|.+. |.|-. .....++...|..-|+++.+
T Consensus 294 ~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~f 342 (462)
T PRK09444 294 TTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRF 342 (462)
T ss_pred cCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3678899999999998765 55663 44555677778888888876
No 418
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=39.17 E-value=1.6e+02 Score=26.23 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=48.9
Q ss_pred HHhcCCcEEEEecch-hHHHHHHHHHHHhhcCC--eEEEecCC-----------CCCCCC-CCcEEEEEeCCCCCHHHHH
Q 028777 45 TATQKGSVFLYGVGR-EGLMLKALCMRLAHLGI--STHLVFDM-----------TTPPIS-SNDLLIASAGPGGFSTVDA 109 (204)
Q Consensus 45 ~i~~a~~I~i~G~G~-S~~~a~~~~~~l~~lg~--~~~~~~d~-----------~~~~~~-~~DlvI~iS~sG~t~~~~~ 109 (204)
.+.+.++|.++|... .+..+..+...|...|+ +++.++.. ....+. +=|+++++--. +.+.+
T Consensus 3 ~l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~---~~~~~ 79 (447)
T TIGR02717 3 HLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA---KYVPQ 79 (447)
T ss_pred cccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH---HHHHH
Confidence 456788999998744 34466667777777776 56666540 011122 23888766553 44667
Q ss_pred HHHHHHHcCCeEEEE
Q 028777 110 ICSRARSYGARVLLL 124 (204)
Q Consensus 110 ~~~~ak~~g~~vI~i 124 (204)
+++.|.++|++.+.|
T Consensus 80 ~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 80 VVEECGEKGVKGAVV 94 (447)
T ss_pred HHHHHHhcCCCEEEE
Confidence 778888889887654
No 419
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=39.12 E-value=61 Score=23.21 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 105 STVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 105 ~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
..+.++...+++.|+++|.++.....
T Consensus 114 ~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 114 EELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHHHHHHHhcCCceEEEEEecCCc
Confidence 44556666777889999999987655
No 420
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=39.07 E-value=54 Score=25.49 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 105 STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 105 ~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
..+.+.++..++.|.++|.+|.... .+.++||.++.+.
T Consensus 174 ~~l~~~l~~~~~~~~tii~~tH~~~--~~~~~~d~i~~l~ 211 (214)
T TIGR02673 174 ERILDLLKRLNKRGTTVIVATHDLS--LVDRVAHRVIILD 211 (214)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhcCEEEEec
Confidence 4566777776667888777776654 4778899988764
No 421
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=39.03 E-value=2.4e+02 Score=25.44 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhHHHHHHHH---HHHh-hcCCeEEEecC-----------------CC---CC-----
Q 028777 37 IMVAELTNTATQKGSVFLYGVGREGLMLKALC---MRLA-HLGISTHLVFD-----------------MT---TP----- 87 (204)
Q Consensus 37 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~---~~l~-~lg~~~~~~~d-----------------~~---~~----- 87 (204)
+.+.++++.- +.+.||++|+=.+.++..++. .++. .+|++++.+.- .. ..
T Consensus 87 ~~i~ei~~~~-~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~~Gf~~~~tqg~d~~Laa~~~~~~~~~~~~ 165 (457)
T CHL00073 87 RLCLQIKKDR-NPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAHRCPEQEVST 165 (457)
T ss_pred HHHHHHHHhC-CCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeCCCccCcCCcchhHHHHHhHHhhhhhhcCc
Confidence 3444444443 588899999988888887765 3554 56888887532 00 00
Q ss_pred ------------------------CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 88 ------------------------PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 88 ------------------------~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
.-.+.++.++-++. ..+.-.+-..+++.|+.++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~--~~~~~~i~~lL~~lGI~v~~~lp 226 (457)
T CHL00073 166 SESKETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLP--STVASQLTLELKRQGIKVSGWLP 226 (457)
T ss_pred cccccccccccccccccccccccccCCCCcEEEEEecC--cccHHHHHHHHHHcCCeEeEEeC
Confidence 01245799999987 44466677889999999987665
No 422
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=39.02 E-value=1.2e+02 Score=25.65 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHHHHHhc-CC--cEEEEecchhHHHHHHHHHHHhhcCCeEEEecCC-CCCCCCCCcEEEE-----------EeCCC
Q 028777 38 MVAELTNTATQ-KG--SVFLYGVGREGLMLKALCMRLAHLGISTHLVFDM-TTPPISSNDLLIA-----------SAGPG 102 (204)
Q Consensus 38 ~l~~~~~~i~~-a~--~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~-~~~~~~~~DlvI~-----------iS~sG 102 (204)
.+.++...-.+ .+ +|++.= ++...-+..++..|...|+++..+.|. ....+++=|.||+ ++..|
T Consensus 131 ~v~~~l~~A~~~~k~~~V~VtE-SRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiG 209 (301)
T COG1184 131 TVLEVLKTAADRGKRFKVIVTE-SRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIG 209 (301)
T ss_pred HHHHHHHHhhhcCCceEEEEEc-CCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccc
Confidence 44444444433 33 445544 444445888999999999999999881 1122333344443 44555
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCe
Q 028777 103 GFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASV 139 (204)
Q Consensus 103 ~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~ 139 (204)
. .-++-.||+.|.|+++.+...+-.|...+...
T Consensus 210 T----~~lA~~A~e~~~Pf~v~aesyKf~p~~~~~~~ 242 (301)
T COG1184 210 T----SPLALAARELRVPFYVVAESYKFVPKTLLDTL 242 (301)
T ss_pred h----HHHHHHHHHhCCCEEEEeeeecccccccCCCc
Confidence 3 44667799999999998866432143333333
No 423
>PRK11587 putative phosphatase; Provisional
Probab=38.79 E-value=1.9e+02 Score=22.51 Aligned_cols=48 Identities=8% Similarity=0.177 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEe
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
.+.+++++++ |.+..= ++.|++.|+++|+++..... .-...+|+.+.-
T Consensus 152 g~~p~~~l~i----gDs~~d---i~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~ 199 (218)
T PRK11587 152 GLAPQECVVV----EDAPAG---VLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHS 199 (218)
T ss_pred CCCcccEEEE----ecchhh---hHHHHHCCCEEEEECCCCch-hhhccCCEEecc
Confidence 4566776666 555322 35678889999999865433 223346665543
No 424
>COG2090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.70 E-value=90 Score=23.14 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
..+||+|.++.+-.-+++-+.++.+..+|..+..+-..
T Consensus 33 prGDCIIgi~Adk~~~dlse~fk~~~r~~~~i~vvi~~ 70 (141)
T COG2090 33 PRGDCIIGISADKALRDLSEEFKAALRRGKRIRVVIRV 70 (141)
T ss_pred cCCCEEEEEccCCChhHhhHHHHHHHhCCCeEEEEEEc
Confidence 35899999999999999999999999999988877644
No 425
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=38.63 E-value=70 Score=25.16 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 104 FSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 104 t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
...+.++++..++.|.++|.+|..... .+.+.||.++.+..
T Consensus 179 ~~~~~~~l~~~~~~~~tiii~sh~~~~-~~~~~~d~i~~l~~ 219 (226)
T cd03234 179 ALNLVSTLSQLARRNRIVILTIHQPRS-DLFRLFDRILLLSS 219 (226)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCH-HHHHhCCEEEEEeC
Confidence 456777777777778877777776645 58899999887754
No 426
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=38.63 E-value=71 Score=25.42 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCCc----chhhccCeEE
Q 028777 106 TVDAICSRARSYGARVLLLTAQPESG----SSVKHASVVA 141 (204)
Q Consensus 106 ~~~~~~~~ak~~g~~vI~iT~~~~s~----~l~~~ad~~l 141 (204)
.+.++++.+|+.|.++..-|+..... .+.+++|..+
T Consensus 55 fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l 94 (213)
T PRK10076 55 FATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVL 94 (213)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEE
Confidence 46899999999999999999875540 2556677643
No 427
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.53 E-value=2.8e+02 Score=24.51 Aligned_cols=91 Identities=9% Similarity=-0.084 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhh----c----CCeEEEecC--------------------CC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAH----L----GISTHLVFD--------------------MT 85 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~----l----g~~~~~~~d--------------------~~ 85 (204)
.+.+.++++.+.. +.+-|+++++..+..++.++...... . ++++..++- ..
T Consensus 72 ~L~~ai~~~~~~~-~p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a~~al~~~l 150 (435)
T cd01974 72 NLIDGLKNAYAVY-KPDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNMVKGILTHL 150 (435)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHHHHHHHHHH
Confidence 3444455544443 36779999999999999887654432 2 677776641 01
Q ss_pred CCC----CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEe
Q 028777 86 TPP----ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 86 ~~~----~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT 125 (204)
... -.++.+-|+-.......++-++.+.+++.|++++.++
T Consensus 151 ~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~~~ 194 (435)
T cd01974 151 TEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTILP 194 (435)
T ss_pred hcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEEec
Confidence 111 2344565553222222236677777888999998765
No 428
>PRK08462 biotin carboxylase; Validated
Probab=38.52 E-value=61 Score=28.58 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCeEEEEecCC--CCcchhhccCeEEEeC
Q 028777 106 TVDAICSRARSYGARVLLLTAQP--ESGSSVKHASVVAYVP 144 (204)
Q Consensus 106 ~~~~~~~~ak~~g~~vI~iT~~~--~s~~l~~~ad~~l~~~ 144 (204)
--+.+++.||+.|..+|++.+.+ ++ +-.++||..+.++
T Consensus 15 ~~~~~~~~~~~~G~~~v~~~~~~d~~~-~~~~~ad~~~~~~ 54 (445)
T PRK08462 15 IALRAIRTIQEMGKEAIAIYSTADKDA-LYLKYADAKICIG 54 (445)
T ss_pred HHHHHHHHHHHcCCCEEEEechhhcCC-chhhhCCEEEEeC
Confidence 37789999999999999995543 34 5568899988774
No 429
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=38.42 E-value=97 Score=21.70 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=26.4
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.+.|++|+....+...+++..+..+.+.|..+|=.++.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 36688888888787777776554445778877766643
No 430
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=38.39 E-value=24 Score=30.39 Aligned_cols=98 Identities=10% Similarity=0.073 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHH--HHHhhcCCeEEEec---C------CCCCCCCCCcEEEEEeCCCCCHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALC--MRLAHLGISTHLVF---D------MTTPPISSNDLLIASAGPGGFST 106 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~--~~l~~lg~~~~~~~---d------~~~~~~~~~DlvI~iS~sG~t~~ 106 (204)
.-..+++.+++ .+.++|.|+..+ ++-+. ..|..+|+-= ++. . .......+-|++|.+-.+|=+-.
T Consensus 16 ~ga~l~~~l~~--~~~~~G~GG~~m-~~~~~~~~~lsv~G~~e-vl~~~~~~~~~~~~~~~~~~~pd~~i~iD~p~Fnl~ 91 (347)
T PRK14089 16 HLKELLKNLPK--DYELIGIFDKSL-GNPLYDSREFSIMGFVD-VLPKLFFAKKAIKEMVELAKQADKVLLMDSSSFNIP 91 (347)
T ss_pred HHHHHHHHHhc--CCEEEEEechHH-HHhcCChHHhhhhhHHH-HHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHH
Confidence 33456666666 799999999888 33221 2333344311 110 0 00111367899999999998855
Q ss_pred HHHHHHHHHHc--CCeEEEEecCC--------CCcchhhccCeEEEe
Q 028777 107 VDAICSRARSY--GARVLLLTAQP--------ESGSSVKHASVVAYV 143 (204)
Q Consensus 107 ~~~~~~~ak~~--g~~vI~iT~~~--------~s~~l~~~ad~~l~~ 143 (204)
+++.+|+. |++++-..+.. -. .+++++|..+.+
T Consensus 92 ---lak~~k~~~~~i~viyyi~PqvWAWr~~R~~-~i~k~~d~vl~i 134 (347)
T PRK14089 92 ---LAKKIKKAYPKKEIIYYILPQVWAWKKGRAK-ILEKYCDFLASI 134 (347)
T ss_pred ---HHHHHHhcCCCCCEEEEECccceeeCcchHH-HHHHHHhhhhcc
Confidence 56677888 68888655331 12 577888887664
No 431
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.36 E-value=2.7e+02 Score=24.48 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecchhHHHHHH-----------------------HHHHHhhcCCeEEEec--C--CCCC
Q 028777 35 LDIMVAELTNTATQKGSVFLYGVGREGLMLKA-----------------------LCMRLAHLGISTHLVF--D--MTTP 87 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~-----------------------~~~~l~~lg~~~~~~~--d--~~~~ 87 (204)
..+.+++....+..++..++++.|.+...+-. +...+...|..+..+. | ....
T Consensus 64 ~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ 143 (427)
T PRK05994 64 TNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFER 143 (427)
T ss_pred cHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHH
Confidence 34566666666667777888888875433211 1112334555555543 1 1122
Q ss_pred CCCCCcEEEEE-e---CCCCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----chhhccCeEEEeCC
Q 028777 88 PISSNDLLIAS-A---GPGGFSTVDAICSRARSYGARVLLLTAQPESG-----SSVKHASVVAYVPA 145 (204)
Q Consensus 88 ~~~~~DlvI~i-S---~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~-----~l~~~ad~~l~~~~ 145 (204)
.++++.-+|++ + ..|...++-++.+.|+++|+.+| .++.... |+.--+|+++...+
T Consensus 144 ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~li--vD~a~a~~~~~~pl~~gaDivv~S~t 208 (427)
T PRK05994 144 AITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLI--VDNTLASPYLIRPIEHGADIVVHSLT 208 (427)
T ss_pred hcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE--EECCccccccCCccccCCcEEEEcCc
Confidence 33444444444 2 23677788888999999997655 3332210 44445887765544
No 432
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.35 E-value=2.3e+02 Score=23.40 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=38.1
Q ss_pred cEEEEecch--hHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 51 SVFLYGVGR--EGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 51 ~I~i~G~G~--S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
+..++..+. |.-++..+..++...+. ..++-|++|++ |..-.++.+++.+...++|+++|-.
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~~~~-----------~~~~~D~vi~i---GGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKKKLA-----------VEDGADYLFVL---GGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhCCC-----------ccCCCCEEEEE---CCcHHHHHHHHHhcCCCCcEEEEec
Confidence 355666666 44567777777765542 11223555554 3335577788877778888888754
No 433
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=38.29 E-value=1.7e+02 Score=22.07 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=57.1
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH---cCC-eEEEEecCCCC--cchhhccCeEEEeCCccccCCCcccccCCCC
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARS---YGA-RVLLLTAQPES--GSSVKHASVVAYVPAQTMADDDDEQGKEKSR 161 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~---~g~-~vI~iT~~~~s--~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~ 161 (204)
.+.++|.+|++.-.|..-...++++...+ .|. .++-+-+.+.. ..+.+.||..|.++.-+..
T Consensus 63 ~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfp------------ 130 (157)
T PRK00103 63 ALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLP------------ 130 (157)
T ss_pred hCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEeccCCCc------------
Confidence 45678999999999988877777776654 454 55555554322 0466779988877543321
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHhCCC
Q 028777 162 PLMPMGSVYEGAMFVLFEMVVYKLGEALGQS 192 (204)
Q Consensus 162 ~~~~~~s~~~~~~~~~ld~L~~~l~~~~g~~ 192 (204)
-..+-.++++=||..+.-..|.+
T Consensus 131 --------H~larlvL~EQlYRa~tIl~g~P 153 (157)
T PRK00103 131 --------HQLVRVLLAEQLYRAWSILAGHP 153 (157)
T ss_pred --------HHHHHHHHHHHHHHHHHHHCCCC
Confidence 01245678899998887766654
No 434
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=38.29 E-value=2.5e+02 Score=25.13 Aligned_cols=92 Identities=7% Similarity=-0.011 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc------------CCeEEEecC------------------
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL------------GISTHLVFD------------------ 83 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l------------g~~~~~~~d------------------ 83 (204)
++++.++.+.+...+.+-|+++.++.+..++.++..-...+ +++++.++-
T Consensus 79 ~L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~Gy~~a~~al 158 (461)
T TIGR02931 79 RVEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMITGYDVAVHDF 158 (461)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHH
Confidence 34455555555544567789999999998888876543322 456666541
Q ss_pred ---CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 84 ---MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 84 ---~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
+....-.++.+-|+-.. -...++-++.+.+++.|.+++.+.+
T Consensus 159 i~~~~~~~~~~~~VNlig~~-~~~~D~~elk~lL~~~Gl~v~~l~d 203 (461)
T TIGR02931 159 VKHFAKKDKPNDKINLITGW-VNPGDVKELKHLLEEMDIEANVLFE 203 (461)
T ss_pred HHHHccCCCCCCcEEEECCC-CChhhHHHHHHHHHHcCCceEEeec
Confidence 01111224556666543 2235667777778888999998754
No 435
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=38.23 E-value=1.9e+02 Score=24.91 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=39.7
Q ss_pred HHHHhhcCCeEEEecC-CCCCCCC--CCcEEEE----EeCCC---CCHHHHHHHHHHHHcCCeEEEEecC
Q 028777 68 CMRLAHLGISTHLVFD-MTTPPIS--SNDLLIA----SAGPG---GFSTVDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 68 ~~~l~~lg~~~~~~~d-~~~~~~~--~~DlvI~----iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~~ 127 (204)
+..|...|+++..+.| .....+. +=|.||+ +...| +.--+..++-.||.+|+|++..+..
T Consensus 199 a~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~ 268 (344)
T PRK05720 199 AWELYQAGIDVTVITDNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPS 268 (344)
T ss_pred HHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccc
Confidence 5667788999999988 2222232 3466665 33444 3444566778899999999987754
No 436
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=38.23 E-value=61 Score=23.80 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=29.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 94 LLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 94 lvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
++|++|.|---..+..+++.+.+.|++ +.+-+..++
T Consensus 1 ~~vFvS~SMP~~~Lk~l~~~a~~~g~~-~VlRG~~~~ 36 (130)
T TIGR02742 1 VMVFVSFSMPEPLLKQLLDQAEALGAP-LVIRGLLDN 36 (130)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHhCCe-EEEeCCCCC
Confidence 578899999999999999999999985 556666655
No 437
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=38.22 E-value=59 Score=25.67 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEe--cCCCCcchhhcc
Q 028777 92 NDLLIASAGPGGFSTVDAICSRARSYGARVLLLT--AQPESGSSVKHA 137 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT--~~~~s~~l~~~a 137 (204)
.-++|++|-...+.++.++++.+|+.|+.+.+|. +.... .|.++|
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~~~~~-~L~~ia 155 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEE-ELREIA 155 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCcCCHH-HHHHHh
Confidence 4578888876566668888999999999977664 32233 455554
No 438
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=38.19 E-value=1e+02 Score=19.41 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHH-----hcCCcEEEEecchhH----HHHHHHHHHH
Q 028777 34 PLDIMVAELTNTA-----TQKGSVFLYGVGREG----LMLKALCMRL 71 (204)
Q Consensus 34 ~~~~~l~~~~~~i-----~~a~~I~i~G~G~S~----~~a~~~~~~l 71 (204)
.+...++.+...+ .+.+.|.+.|.|..- .+|+.+..++
T Consensus 10 ~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~ 56 (70)
T PF01918_consen 10 PIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRF 56 (70)
T ss_dssp -HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 5667888888888 789999999999954 3555555554
No 439
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=38.06 E-value=64 Score=17.37 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=17.3
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Q 028777 91 SNDLLIASAGPGGFSTVDAICSR 113 (204)
Q Consensus 91 ~~DlvI~iS~sG~t~~~~~~~~~ 113 (204)
.+++=|.+|..|.++.+...++.
T Consensus 2 ~g~LqI~ISTnG~sP~la~~iR~ 24 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLARLIRK 24 (30)
T ss_dssp -TTEEEEEEESSS-HHHHHHHHH
T ss_pred CCCeEEEEECCCCChHHHHHHHH
Confidence 57888999999999988776654
No 440
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=37.88 E-value=1.7e+02 Score=27.31 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCcEEEEecchhH-HHHHHHHHHHhhcCCeEEEec-------------------C------CCCCCCCCCcEEEEEeCCC
Q 028777 49 KGSVFLYGVGREG-LMLKALCMRLAHLGISTHLVF-------------------D------MTTPPISSNDLLIASAGPG 102 (204)
Q Consensus 49 a~~I~i~G~G~S~-~~a~~~~~~l~~lg~~~~~~~-------------------d------~~~~~~~~~DlvI~iS~sG 102 (204)
.++|.++|.|.-+ .+|+ .|..-|+++..++ | .....+.+-|++|+.+ +
T Consensus 400 ~~~vII~G~Gr~G~~va~----~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~--~ 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGR----LLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI--D 473 (621)
T ss_pred cCcEEEEecChHHHHHHH----HHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe--C
Confidence 5899999999954 3444 4444455544442 1 1223444556555554 5
Q ss_pred CCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 028777 103 GFSTVDAICSRARSY--GARVLLLTAQPES 130 (204)
Q Consensus 103 ~t~~~~~~~~~ak~~--g~~vI~iT~~~~s 130 (204)
+.+.-..++..+|+. ..++++-+.+..+
T Consensus 474 d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 556667777778876 4577776765543
No 441
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=37.87 E-value=1.5e+02 Score=26.76 Aligned_cols=99 Identities=4% Similarity=-0.027 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc--------------CCcEEEEecchhHHHHHHHHHHHhhcCCeE
Q 028777 13 ASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQ--------------KGSVFLYGVGREGLMLKALCMRLAHLGIST 78 (204)
Q Consensus 13 ~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~--------------a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~ 78 (204)
+..+.+.|.+.+..+++++++.+++..+++.+.|.+ .++.++..-. . |.|.....|+..
T Consensus 320 a~~~a~~Ia~~LselDP~na~~Y~~Na~ay~~eL~~Ld~~~~~~la~ip~k~r~vvt~H~----a---f~YLa~~YGL~~ 392 (479)
T TIGR03772 320 AIAYVEVIRDKLIEVDPRGAQAYRSNASAYIHRLERLDTYVRRTIATIPPSRRHLITTHD----A---YSYLGQAYGLNI 392 (479)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCEEEEECC----c---HHHHHHHCCCeE
Confidence 346777888888888887666666666666554431 2233333322 1 222223345544
Q ss_pred EEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 79 HLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 79 ~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
..+-. ..++ .....+++.++.+.+|+.++++|..-.....
T Consensus 393 ~~~~~-----~~~~-------~ePS~~~L~~Li~~IK~~~V~~IF~Epq~~~ 432 (479)
T TIGR03772 393 AGFVT-----PNPA-------VEPSLADRRRLTRTIENLKVPAVFLEPNLAA 432 (479)
T ss_pred Eeeec-----cCCC-------CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 32110 1111 2245678888899999999998888766543
No 442
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=37.85 E-value=1.6e+02 Score=21.42 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=47.5
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecCC--CCCCCCCCcEEEEEeC---CCCCHHHHHHHHHHH--HcCCeEEEE
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFDM--TTPPISSNDLLIASAG---PGGFSTVDAICSRAR--SYGARVLLL 124 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~--~~~~~~~~DlvI~iS~---sG~t~~~~~~~~~ak--~~g~~vI~i 124 (204)
||.-+.|.+.-+|+.++..|..-+..+-. .+. ....+.+-|.+|+.|- .+-...+.+.++..+ -.+-+++.+
T Consensus 3 vY~S~~G~Tk~~A~~ia~~l~~~~~~v~~-~~~~~~~~~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f 81 (143)
T PF12724_consen 3 VYFSKTGNTKKIAEWIAEKLGEEGELVDL-EKVEEDEPDLSDYDAVIFGSPIYAGRIPGEMREFIKKNKDNLKNKKVALF 81 (143)
T ss_pred EEECCCchHHHHHHHHHHHHhhhccEEEH-HhhhhcccccccCCEEEEEEEEECCcCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 56667799999999999999865433322 222 3456778888888874 233444566665433 345566665
Q ss_pred ecC
Q 028777 125 TAQ 127 (204)
Q Consensus 125 T~~ 127 (204)
+..
T Consensus 82 ~~~ 84 (143)
T PF12724_consen 82 SVG 84 (143)
T ss_pred EEe
Confidence 543
No 443
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=37.82 E-value=2.9e+02 Score=24.64 Aligned_cols=92 Identities=7% Similarity=0.040 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHH---Hhh-----cCCeEEEecC--------------------CC
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMR---LAH-----LGISTHLVFD--------------------MT 85 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~---l~~-----lg~~~~~~~d--------------------~~ 85 (204)
.+.+.++++.+.. +.+-|+++.++.+..++.++..- +.. .|++++.+.- ..
T Consensus 79 ~L~~aI~~~~~~~-~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~al~~~~ 157 (455)
T PRK14476 79 NVEEAILNICKKA-KPKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEAIVEAL 157 (455)
T ss_pred HHHHHHHHHHHhh-CCCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHh
Confidence 4445555555443 57889999999999888876543 321 2667776532 00
Q ss_pred C-----CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 86 T-----PPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 86 ~-----~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
. ....++.+-|+-...-...++-++.+.++..|.+++.+++
T Consensus 158 ~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~lpd 203 (455)
T PRK14476 158 VPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPIILPD 203 (455)
T ss_pred cccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEEecC
Confidence 1 1224556766633211123455555667888999988764
No 444
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=37.82 E-value=1.4e+02 Score=20.84 Aligned_cols=74 Identities=5% Similarity=0.126 Sum_probs=43.9
Q ss_pred cEEEEecch-hHHHHHHHHHHHhhcCCeEEEec--C-CCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHc--CCeEEEE
Q 028777 51 SVFLYGVGR-EGLMLKALCMRLAHLGISTHLVF--D-MTTPPISSNDLLIASAGPGGFSTVDAICSRARSY--GARVLLL 124 (204)
Q Consensus 51 ~I~i~G~G~-S~~~a~~~~~~l~~lg~~~~~~~--d-~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~--g~~vI~i 124 (204)
-+.++|.|. |+++++.+.......|+++.+-. . .......+-|++++- +.+....+..++. +.||+.|
T Consensus 6 IllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~------Pqi~~~~~~i~~~~~~~pV~~I 79 (106)
T PRK10499 6 IYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLG------PQIAYMLPEIQRLLPNKPVEVI 79 (106)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEEC------HHHHHHHHHHHhhcCCCCEEEE
Confidence 356777787 56788777777777777655422 2 222234566877764 3444444444332 3688888
Q ss_pred ecCCCC
Q 028777 125 TAQPES 130 (204)
Q Consensus 125 T~~~~s 130 (204)
......
T Consensus 80 ~~~~Yg 85 (106)
T PRK10499 80 DSLLYG 85 (106)
T ss_pred ChHhhh
Confidence 765443
No 445
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=37.77 E-value=2.6e+02 Score=23.87 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=51.8
Q ss_pred CcEEEEecchhHHHHHHHHHHHh-hcCCe-EEEecC-----CCCCCCCCCcEEEEEeCCC-CCH---HHHHHHHHHHHcC
Q 028777 50 GSVFLYGVGREGLMLKALCMRLA-HLGIS-THLVFD-----MTTPPISSNDLLIASAGPG-GFS---TVDAICSRARSYG 118 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~-~lg~~-~~~~~d-----~~~~~~~~~DlvI~iS~sG-~t~---~~~~~~~~ak~~g 118 (204)
+++.+|+...+..+|+..+..|. .+|.. ..-+.| .....++..|++|+=|.++ -+. |++-++..+|+.|
T Consensus 3 ~~~~if~g~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~as 82 (314)
T COG0462 3 NNMKIFSGSSNPELAEKIAKRLGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRAS 82 (314)
T ss_pred CceEEEECCCCHHHHHHHHHHhCCCcccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcC
Confidence 56778888888888888888775 34432 223444 3445677889998888887 333 4555567889988
Q ss_pred CeEEEEe
Q 028777 119 ARVLLLT 125 (204)
Q Consensus 119 ~~vI~iT 125 (204)
++-|.+.
T Consensus 83 A~~It~V 89 (314)
T COG0462 83 AKRITAV 89 (314)
T ss_pred CceEEEE
Confidence 8766553
No 446
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=37.58 E-value=50 Score=24.02 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=25.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCeE--EEEecCCCCcchhhccCeEEEeCC
Q 028777 95 LIASAGPGGFSTVDAICSRARSYGARV--LLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 95 vI~iS~sG~t~~~~~~~~~ak~~g~~v--I~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
++..|.||+++++ +++.|.++ +-++..+.. .+ -.|++|.+++
T Consensus 1 IvY~S~TGNte~f------v~~lg~~~~~i~~~~~d~~-~~--~~~~vliTyT 44 (125)
T TIGR00333 1 IYFSSKTGNVQRF------VEKLGFQHIRIPVDETDDI-HV--DQEFVLITYT 44 (125)
T ss_pred CEEEcccccHHHH------HHHcCCCcEEeecCCcchh-hc--CCCEEEEecC
Confidence 4678999999999 34556665 555533222 22 4666666544
No 447
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=37.56 E-value=74 Score=24.44 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCCH---HHHHHHHHHHHcCCeEEEEecCCCCcchhhccC
Q 028777 92 NDLLIASAGPGGFS---TVDAICSRARSYGARVLLLTAQPESGSSVKHAS 138 (204)
Q Consensus 92 ~DlvI~iS~sG~t~---~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad 138 (204)
+.++|++| +|.+. ++.++++.+++.|+++..|.=..+...|.++|+
T Consensus 108 ~~iiil~s-d~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~ 156 (183)
T cd01453 108 REVLIIFS-SLSTCDPGNIYETIDKLKKENIRVSVIGLSAEMHICKEICK 156 (183)
T ss_pred eEEEEEEc-CCCcCChhhHHHHHHHHHHcCcEEEEEEechHHHHHHHHHH
Confidence 45777777 44433 456788899999987744443222203555554
No 448
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.53 E-value=2.8e+02 Score=24.14 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHh----hcCCeEEEecC-----------------C---CC-CCC
Q 028777 35 LDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA----HLGISTHLVFD-----------------M---TT-PPI 89 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~----~lg~~~~~~~d-----------------~---~~-~~~ 89 (204)
+++.++++.+.. +.+-|+++++..+..++.++..-.. ..|++++.++- . .. ..-
T Consensus 75 L~~aI~ei~~~~-~P~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~ 153 (396)
T cd01979 75 LDRVVTQIKRDR-NPSVIFLIGSCTTEVIKMDLEGAAPRLSAEIGVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPS 153 (396)
T ss_pred HHHHHHHHHHhc-CCCEEEEECCCHHHHHhcCHHHHHHHHhhcCCCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccC
Confidence 333444444333 3678999999999999988765433 45777776532 0 11 122
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEe
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLT 125 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT 125 (204)
.++++.|+-+.+.. ++.++.+.+++.|.+++++.
T Consensus 154 ~~~~VnliG~~~~~--d~~el~~lL~~~Gi~v~~~~ 187 (396)
T cd01979 154 PERSLVLVGSLPDI--VEDQLRRELEQLGIPVVGFL 187 (396)
T ss_pred CCCceEEEEeCCcc--hHHHHHHHHHHcCCeEEEEe
Confidence 45778877776653 46777788899999998554
No 449
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=37.48 E-value=1.2e+02 Score=26.47 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=38.6
Q ss_pred HHHHhhcCCeEEEecC-CCCCCC--CCCcEEEE----EeCCC---CCHHHHHHHHHHHHcCCeEEEEec
Q 028777 68 CMRLAHLGISTHLVFD-MTTPPI--SSNDLLIA----SAGPG---GFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 68 ~~~l~~lg~~~~~~~d-~~~~~~--~~~DlvI~----iS~sG---~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
...|...|+++.++.| .....+ ++=|.||+ +...| +.--+..++-.||.+|+|++..+.
T Consensus 220 a~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap 288 (363)
T PRK05772 220 VYELMEEGIKVTLITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAP 288 (363)
T ss_pred HHHHHHCCCCEEEEehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEcc
Confidence 3556667888888887 222223 23467766 44455 334456677889999999998864
No 450
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=37.45 E-value=2.2e+02 Score=24.23 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=57.8
Q ss_pred HhcCCcEEEEecchh----HHHHHHHHHHHh-hcCC--eEEEecCC---------CCCCCCCCcEEEEEeCCCCCHHHHH
Q 028777 46 ATQKGSVFLYGVGRE----GLMLKALCMRLA-HLGI--STHLVFDM---------TTPPISSNDLLIASAGPGGFSTVDA 109 (204)
Q Consensus 46 i~~a~~I~i~G~G~S----~~~a~~~~~~l~-~lg~--~~~~~~d~---------~~~~~~~~DlvI~iS~sG~t~~~~~ 109 (204)
|.+|+.|.-.|.|-- ..+++.|+..|. .+|- ++.--..| .-..+.| ++.|.+-.||..+.+.-
T Consensus 192 L~~A~vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~~~QIGqTGk~V~P-~lYiA~GISGaiQH~~G 270 (313)
T PRK03363 192 LDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKP-ELYLAVGISGQIQHMVG 270 (313)
T ss_pred cccCCEEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCHHheecCCCCCcCc-cEEEEEccccHHHHHhh
Confidence 568888888888862 246666666663 1111 11100001 1123334 79999999998777652
Q ss_pred HHHHHHHcCC-eEEEEecCCCCcchhhccCeEEEe
Q 028777 110 ICSRARSYGA-RVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 110 ~~~~ak~~g~-~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
+ +++ .||+|=..++. |+.+.|||-+.-
T Consensus 271 m------~~s~~IVAIN~Dp~A-PIF~~ADygiVg 298 (313)
T PRK03363 271 A------NASQTIFAINKDKNA-PIFQYADYGIVG 298 (313)
T ss_pred c------ccCCEEEEEcCCCCC-CchhhCCeeEee
Confidence 2 233 47899999999 999999998854
No 451
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=37.28 E-value=2.3e+02 Score=23.08 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhHHH------------HHHHHHHHhh-cCCeEEEecC---CCCCCCCCCcEEEE
Q 028777 34 PLDIMVAELTNTATQKGSVFLYGVGREGLM------------LKALCMRLAH-LGISTHLVFD---MTTPPISSNDLLIA 97 (204)
Q Consensus 34 ~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~------------a~~~~~~l~~-lg~~~~~~~d---~~~~~~~~~DlvI~ 97 (204)
..++.++++.+.+..+-.|.=.|.+.+..- -..+...+.. .+.++..-+. .....+..+ .-++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g-~~iI 100 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAG-ADII 100 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhC-CCEE
Confidence 345577777778888788888888877321 1122223332 2544332221 111112222 4578
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCeEEEEecCC
Q 028777 98 SAGPGGFSTVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 98 iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
-|.+|.+.. -++++.+++.|+++|++....
T Consensus 101 Ndis~~~~~-~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 101 NDVSGGRGD-PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred EeCCCCCCC-hHHHHHHHHcCCCEEEECcCC
Confidence 888887633 456677889999999998653
No 452
>PRK14031 glutamate dehydrogenase; Provisional
Probab=37.24 E-value=3.1e+02 Score=24.61 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=50.1
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHH------------HHHHH
Q 028777 48 QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAI------------CSRAR 115 (204)
Q Consensus 48 ~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~------------~~~ak 115 (204)
+..+|.+-|.|. ++.+.+..|...|-.+..++|..-.. ....|=..+-+.. ...+.
T Consensus 227 ~g~rVaVQGfGN---VG~~aA~~L~e~GAkVVaVSD~~G~i---------y~~~Gld~~~l~~~~~~k~~~~~~v~~~~~ 294 (444)
T PRK14031 227 KGKVCLVSGSGN---VAQYTAEKVLELGGKVVTMSDSDGYI---------YDPDGIDREKLDYIMELKNLYRGRIREYAE 294 (444)
T ss_pred CCCEEEEECCCH---HHHHHHHHHHHCCCEEEEEECCCCeE---------ECCCCCCHHHHHHHHHHHhhcCCchhhhHh
Confidence 568999999876 56666677788999999988722111 1222332222211 12233
Q ss_pred HcCCeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 116 SYGARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 116 ~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
..|++.+ ..+. ++...||+.+++..+.
T Consensus 295 ~~ga~~i----~~d~-~~~~~cDIliPaAl~n 321 (444)
T PRK14031 295 KYGCKYV----EGAR-PWGEKGDIALPSATQN 321 (444)
T ss_pred hcCCEEc----CCcc-cccCCCcEEeeccccc
Confidence 3355544 3345 7888899999887654
No 453
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=37.19 E-value=1.8e+02 Score=21.90 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=56.4
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHH---HcCCeEEEEecCCCC--cchhhccCeEEEeCCccccCCCcccccCCCCCcccc
Q 028777 92 NDLLIASAGPGGFSTVDAICSRAR---SYGARVLLLTAQPES--GSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPM 166 (204)
Q Consensus 92 ~DlvI~iS~sG~t~~~~~~~~~ak---~~g~~vI~iT~~~~s--~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (204)
+|.+|++.-.|..-...++++... ..|..+.-+-+.+.. ..+.+.||..+.++.-+...
T Consensus 65 ~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGGa~G~~~~v~~~a~~~lSLS~mTfpH---------------- 128 (153)
T TIGR00246 65 KAHVVTLDIPGKPWTTPQLADTLEKWKTDGRDVTLLIGGPEGLSPTCKAAAEQSWSLSKLTLPH---------------- 128 (153)
T ss_pred CCeEEEEcCCCCcCCHHHHHHHHHHHhccCCeEEEEEcCCCcCCHHHHHhcCceEEeecCCCcH----------------
Confidence 589999999999888888888876 456667766666432 04667799888775433220
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 028777 167 GSVYEGAMFVLFEMVVYKLGEALGQS 192 (204)
Q Consensus 167 ~s~~~~~~~~~ld~L~~~l~~~~g~~ 192 (204)
..+-.++++=||..+.-..|.+
T Consensus 129 ----~larlvL~EQiYRA~tIl~g~P 150 (153)
T TIGR00246 129 ----PLVRVIVAESLYRAWSITTNHP 150 (153)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCC
Confidence 1235678898988887666653
No 454
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=37.13 E-value=1.7e+02 Score=22.65 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=39.3
Q ss_pred EecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHH---------HHH-HHHHHcCCeEEEE
Q 028777 55 YGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVD---------AIC-SRARSYGARVLLL 124 (204)
Q Consensus 55 ~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~---------~~~-~~ak~~g~~vI~i 124 (204)
||.|.-..+.+.+. ++|..+..+.+. ..+.+-|.+|+ --+|...+.. +.+ +.+.++|.|+++|
T Consensus 7 ~g~~n~~~v~~~l~----~~g~~~~~~~~~--~~l~~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGi 79 (201)
T PRK13152 7 YKAGNLNSVAKAFE----KIGAINFIAKNP--KDLQKADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGI 79 (201)
T ss_pred CCCCcHHHHHHHHH----HCCCeEEEECCH--HHHcCCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEE
Confidence 45554455555544 468777776642 12344576666 5555644432 222 3345679999999
Q ss_pred ecCCC
Q 028777 125 TAQPE 129 (204)
Q Consensus 125 T~~~~ 129 (204)
+..-.
T Consensus 80 C~G~Q 84 (201)
T PRK13152 80 CLGMQ 84 (201)
T ss_pred CHhHH
Confidence 96544
No 455
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.08 E-value=2.4e+02 Score=23.32 Aligned_cols=99 Identities=9% Similarity=0.142 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-----------c---CCcEEEEecchhHHHHHHHHHHHhhcCCeE
Q 028777 13 ASQICNQIASIFSKPTAPHPPPLDIMVAELTNTAT-----------Q---KGSVFLYGVGREGLMLKALCMRLAHLGIST 78 (204)
Q Consensus 13 ~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~-----------~---a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~ 78 (204)
+..+.+.|.+.+..+++.+...+++..+.+.+.+. . .++.++..-. . |.|...++|+..
T Consensus 126 ~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~~~v~~H~----a---f~Y~~~~yGl~~ 198 (287)
T cd01137 126 AIIYVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAKFATIPAEKRKLVTSEG----A---FSYFAKAYGLKE 198 (287)
T ss_pred HHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCEEEEecc----c---HHHHHHHcCCeE
Confidence 34677788888888888766556665555554442 1 1223333221 1 223334456655
Q ss_pred EEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 79 HLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 79 ~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
..+-.. .+ ......+++.++.+.+|+.|+++|..-...+.
T Consensus 199 ~~~~~~-----~~-------~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~ 238 (287)
T cd01137 199 AYLWPI-----NT-------EEEGTPKQVATLIEQVKKEKVPAVFVESTVND 238 (287)
T ss_pred eecccC-----CC-------CCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCh
Confidence 432210 00 11234678888889999999998876555444
No 456
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.05 E-value=1.1e+02 Score=27.86 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=20.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
.++|.++|.|.-+ +.+...|..-|.++..++
T Consensus 417 ~~hiiI~G~G~~G---~~la~~L~~~g~~vvvId 447 (558)
T PRK10669 417 CNHALLVGYGRVG---SLLGEKLLAAGIPLVVIE 447 (558)
T ss_pred CCCEEEECCChHH---HHHHHHHHHCCCCEEEEE
Confidence 4899999999843 334455555566665553
No 457
>PRK08727 hypothetical protein; Validated
Probab=36.87 E-value=1.4e+02 Score=23.82 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=47.2
Q ss_pred CcEEEEecchhH--HHHHHHHHHHhhcCCeEEEecC--C------CCCCCCCCcEEEE---EeCCCCC---HHHHHHHHH
Q 028777 50 GSVFLYGVGREG--LMLKALCMRLAHLGISTHLVFD--M------TTPPISSNDLLIA---SAGPGGF---STVDAICSR 113 (204)
Q Consensus 50 ~~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d--~------~~~~~~~~DlvI~---iS~sG~t---~~~~~~~~~ 113 (204)
+-++++|.-+++ +++..+...+..-|..+.+++- . ....+..-|++|+ -..+|.. ..+.++...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence 458999874433 3566677777777877766542 0 1113344566655 2233332 356677777
Q ss_pred HHHcCCeEEEEecCCCC
Q 028777 114 ARSYGARVLLLTAQPES 130 (204)
Q Consensus 114 ak~~g~~vI~iT~~~~s 130 (204)
.+++|.++|..++.+-+
T Consensus 122 ~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 122 ARAAGITLLYTARQMPD 138 (233)
T ss_pred HHHcCCeEEEECCCChh
Confidence 78888877777765433
No 458
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=36.78 E-value=2.1e+02 Score=22.48 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=40.4
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCC--eEEEecCCCCCCCCCCcEEEEEeCCCCCHHH---------H-HHHHHHHHcC
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGI--STHLVFDMTTPPISSNDLLIASAGPGGFSTV---------D-AICSRARSYG 118 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~--~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~---------~-~~~~~ak~~g 118 (204)
+|.++..|.... ..+...|.++|. .+....+ ...+.+-|.+|+ .-+|.+.+. . .+.+.+.+.|
T Consensus 3 ~~~iid~g~gn~--~s~~~al~~~g~~~~v~~~~~--~~~l~~~d~lIl-pG~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (209)
T PRK13146 3 TVAIIDYGSGNL--RSAAKALERAGAGADVVVTAD--PDAVAAADRVVL-PGVGAFADCMRGLRAVGLGEAVIEAVLAAG 77 (209)
T ss_pred eEEEEECCCChH--HHHHHHHHHcCCCccEEEECC--HHHhcCCCEEEE-CCCCcHHHHHHHHHHCCcHHHHHHHHHhCC
Confidence 455555554332 223455666787 5555543 123456677777 334544332 1 2334455689
Q ss_pred CeEEEEecCCC
Q 028777 119 ARVLLLTAQPE 129 (204)
Q Consensus 119 ~~vI~iT~~~~ 129 (204)
.|+++|+-...
T Consensus 78 ~PvlGiC~G~q 88 (209)
T PRK13146 78 RPFLGICVGMQ 88 (209)
T ss_pred CcEEEECHHHH
Confidence 99999996543
No 459
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=36.74 E-value=2.1e+02 Score=22.49 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecchhH--HHHHHHHHHHhhcCCeEEEecC----------CCCC--CCCCCcEEEEEeC
Q 028777 35 LDIMVAELTNTATQKGSVFLYGVGREG--LMLKALCMRLAHLGISTHLVFD----------MTTP--PISSNDLLIASAG 100 (204)
Q Consensus 35 ~~~~l~~~~~~i~~a~~I~i~G~G~S~--~~a~~~~~~l~~lg~~~~~~~d----------~~~~--~~~~~DlvI~iS~ 100 (204)
.++..+.+.+...+.++|.+.-.|... -.+.++...+...|+++..+.- ...+ .-...+-+++.|.
T Consensus 57 ~~~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~ 136 (229)
T TIGR01465 57 LEEIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRA 136 (229)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEec
Confidence 344555566666777788777788863 3456677778888888887754 1111 1122355667777
Q ss_pred CCCCHH-HHHHHHHHHHcCCeEEEEecC
Q 028777 101 PGGFST-VDAICSRARSYGARVLLLTAQ 127 (204)
Q Consensus 101 sG~t~~-~~~~~~~ak~~g~~vI~iT~~ 127 (204)
.|.... ..+.+..+.+.+.+++.+++.
T Consensus 137 ~g~~~~~~~~~l~~~~~~~~~~vi~~~~ 164 (229)
T TIGR01465 137 EGRTPMPEGEKLADLAKHGATMAIFLSA 164 (229)
T ss_pred cCCCCCCChHHHHHHhcCCCeEEEECcH
Confidence 775421 122244445556666777654
No 460
>PRK06234 methionine gamma-lyase; Provisional
Probab=36.74 E-value=2.8e+02 Score=24.05 Aligned_cols=111 Identities=12% Similarity=0.072 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHH-----------------------HHHhhcCCeEEEec--C--CC
Q 028777 33 PPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALC-----------------------MRLAHLGISTHLVF--D--MT 85 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~-----------------------~~l~~lg~~~~~~~--d--~~ 85 (204)
......+++....+.+++.+.+++.|.+.+.+-... ..+...|..+..+. | ..
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l 142 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEV 142 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHH
Confidence 445557777766667777888888888654332110 11122344444432 1 11
Q ss_pred CCCCCCCcEEEEEeC----CCCCHHHHHHHHHHHHc--CCeEEEEecCCCCc-----chhhccCeEEEeCC
Q 028777 86 TPPISSNDLLIASAG----PGGFSTVDAICSRARSY--GARVLLLTAQPESG-----SSVKHASVVAYVPA 145 (204)
Q Consensus 86 ~~~~~~~DlvI~iS~----sG~t~~~~~~~~~ak~~--g~~vI~iT~~~~s~-----~l~~~ad~~l~~~~ 145 (204)
...++++.-+|++.. +|...++-++.+.|+++ |+. .|.++.... |+...+|+++...+
T Consensus 143 ~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~--livDea~~~~~~~~~l~~g~Divv~S~s 211 (400)
T PRK06234 143 RNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECL--VFVDNTFCTPYIQRPLQLGADVVVHSAT 211 (400)
T ss_pred HHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCE--EEEECCCCchhcCCchhhCCcEEEeecc
Confidence 122344443444332 46767788888889986 554 444543320 44445787776644
No 461
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=36.73 E-value=1.5e+02 Score=26.68 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHHhhcCCeEEEec
Q 028777 49 KGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 49 a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
.+++.++|.|. +++.+...|...|..+...+
T Consensus 332 ~k~vlIiGaGg---iG~aia~~L~~~G~~V~i~~ 362 (477)
T PRK09310 332 NQHVAIVGAGG---AAKAIATTLARAGAELLIFN 362 (477)
T ss_pred CCEEEEEcCcH---HHHHHHHHHHHCCCEEEEEe
Confidence 46899999874 55666777777887666543
No 462
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=36.71 E-value=2.6e+02 Score=23.66 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCcEEEEecc-hhHHHHHHHHHHHhhcCCeEE--EecC----------------CCCCCCCCCcEEEEE
Q 028777 38 MVAELTNTATQKGSVFLYGVG-REGLMLKALCMRLAHLGISTH--LVFD----------------MTTPPISSNDLLIAS 98 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G-~S~~~a~~~~~~l~~lg~~~~--~~~d----------------~~~~~~~~~DlvI~i 98 (204)
.++++.+.+.+.++++++.-+ ......+.+...|...|+.+. .+.+ ......+..|++|++
T Consensus 9 ~l~~l~~~l~~~~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIav 88 (344)
T TIGR01357 9 LLDQLVEELAEPSKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIAL 88 (344)
T ss_pred hHHHHHHHhhcCCeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 455566666656777665533 344455556666777676542 3332 011223445777776
Q ss_pred eCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 99 AGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 99 S~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
-- |..-++.+++-....+|.++|.|-.
T Consensus 89 GG-Gsv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 89 GG-GVVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred cC-hHHHHHHHHHHHHHccCCCEEEecC
Confidence 52 4444444444433568999888754
No 463
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=36.42 E-value=2.7e+02 Score=23.75 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchh---hc-cCeEEEeCC
Q 028777 101 PGGFSTVDAICSRARSYGARVLLLTAQPESGSSV---KH-ASVVAYVPA 145 (204)
Q Consensus 101 sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~---~~-ad~~l~~~~ 145 (204)
.|.-..+-++++.|+++|++++.=.... . ++. +. +|......+
T Consensus 162 ~g~~~~~~~i~~~a~~~gi~vivD~a~~-~-~~~~~~~~g~D~~~~S~~ 208 (363)
T TIGR01437 162 QKSMLSVEDAAQVAQEHNLPLIVDAAAE-E-DLQKYYRLGADLVIYSGA 208 (363)
T ss_pred cCCcCCHHHHHHHHHHcCCeEEEECCCC-C-chHHHHHcCCCEEEEeCC
Confidence 4555677888999999998776432221 1 222 33 787765544
No 464
>PLN02256 arogenate dehydrogenase
Probab=36.33 E-value=1.6e+02 Score=24.74 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=51.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCC---------CC---C----CC-
Q 028777 27 PTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDM---------TT---P----PI- 89 (204)
Q Consensus 27 l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~---------~~---~----~~- 89 (204)
+|..|+-+++..+++=...- +..+|.++|.|. ++..+...|...|..+..++.. .. . .+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~kI~IIG~G~---mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~ 90 (304)
T PLN02256 15 IDAAQPFDYESRLQEELEKS-RKLKIGIVGFGN---FGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCE 90 (304)
T ss_pred ccccCCCChHhHHhHhhccC-CCCEEEEEeeCH---HHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhh
Confidence 33344444444443322221 345799999876 4445555555667666554320 00 0 11
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHH-HHHHcCCeEEEEecCCCC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICS-RARSYGARVLLLTAQPES 130 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~-~ak~~g~~vI~iT~~~~s 130 (204)
.+-|++|+........++++-+. ..-..|+.++.+++-+..
T Consensus 91 ~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~ 132 (304)
T PLN02256 91 EHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEF 132 (304)
T ss_pred CCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCCchHH
Confidence 24588888777655555544331 112356777777775543
No 465
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=36.32 E-value=2.6e+02 Score=23.42 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=26.3
Q ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCC
Q 028777 89 ISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPE 129 (204)
Q Consensus 89 ~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~ 129 (204)
..+-|++|+...+....++++.+...-..+..++.+++...
T Consensus 71 ~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 71 LATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred ccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 34678888888777777766555444445666666765433
No 466
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=36.31 E-value=86 Score=21.35 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=23.4
Q ss_pred cEEEEecch--hHHHHHHHHHHHhhcCCeEEEec
Q 028777 51 SVFLYGVGR--EGLMLKALCMRLAHLGISTHLVF 82 (204)
Q Consensus 51 ~I~i~G~G~--S~~~a~~~~~~l~~lg~~~~~~~ 82 (204)
-+.++|.|. |.+++.-+...|...|+++....
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~ 38 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 38 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 457888877 45557888888988888766543
No 467
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=36.23 E-value=52 Score=26.52 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCCcchhh
Q 028777 103 GFSTVDAICSRARSYGARVLLLTAQPESGSSVK 135 (204)
Q Consensus 103 ~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~ 135 (204)
-++++.++++.++++|++++..|+.+-. .+.+
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~-~~~~ 52 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLP-DVLS 52 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChH-HHHH
Confidence 5677888889999999999999999776 4443
No 468
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=36.22 E-value=2e+02 Score=22.67 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD 83 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d 83 (204)
.++++.+.+.+++-+.+.|+...-..+..+......-|.+.+.++.
T Consensus 157 ~~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~ 202 (218)
T cd01407 157 ELDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINL 202 (218)
T ss_pred HHHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECC
Confidence 4888889999999999999877666666666666666777888774
No 469
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=36.22 E-value=27 Score=25.82 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCeEEEEecCC
Q 028777 106 TVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 106 ~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
.+.++++.|+++|.+.|+||+..
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~ 39 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHN 39 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEET
T ss_pred CHHHHHHHHHHcCCCEEEEcCCc
Confidence 67888999999999999999884
No 470
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=36.21 E-value=1.3e+02 Score=25.85 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 106 TVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 106 ~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
-...++..+++.|.+++.++..+++ |-..++|..+..+
T Consensus 23 ~~~~~~~a~~~~G~~v~~~~~~~~~-~~~~~ad~~~~~~ 60 (395)
T PRK09288 23 LGKEVAIEAQRLGVEVIAVDRYANA-PAMQVAHRSHVID 60 (395)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCC-chHHhhhheEECC
Confidence 3455667789999999999999988 8888888766554
No 471
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair]
Probab=36.20 E-value=2e+02 Score=24.89 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=60.6
Q ss_pred HHHHHHHHHh--cCCcEEEEecchhHHHHHHHHHHHh-hcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Q 028777 38 MVAELTNTAT--QKGSVFLYGVGREGLMLKALCMRLA-HLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRA 114 (204)
Q Consensus 38 ~l~~~~~~i~--~a~~I~i~G~G~S~~~a~~~~~~l~-~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~a 114 (204)
.++++++... +-+.|++.|-|....+.+-|-.||. .++.+|+.++|. +|=...|..++.-.+.......+.+
T Consensus 194 vf~rLv~e~~~~k~nailVt~KGqP~raTRrflkrL~eel~lpv~vftDg-----DPyG~~Iy~~~k~GS~k~ah~se~l 268 (356)
T COG1697 194 VFQRLVEEGFWEKENAILVTLKGQPDRATRRFLKRLNEELDLPVYVFTDG-----DPYGWYIYSVYKYGSIKLAHESERL 268 (356)
T ss_pred HHHHHHHhhhhhhcCeEEEecCCCccHHHHHHHHHHHHHhCCCEEEEecC-----CCCEEEEEEEEEecchhhhhcchhh
Confidence 4555555443 4678999999999999999998886 578999998873 3434556655555555555556666
Q ss_pred HHcCCeEEEEecC
Q 028777 115 RSYGARVLLLTAQ 127 (204)
Q Consensus 115 k~~g~~vI~iT~~ 127 (204)
.-.+++.+++|..
T Consensus 269 atp~akflGv~~~ 281 (356)
T COG1697 269 ATPDAKFLGVTMQ 281 (356)
T ss_pred cCCcceeeeccHH
Confidence 7778889988854
No 472
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=36.16 E-value=2.1e+02 Score=24.13 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=41.9
Q ss_pred EEecchhHHHHHHHHHHHh-hcCC-eEEEecC-----CCCCCCCCCcEEEEEeCCCC-CHH---HHHHHHHHHHcCCe-E
Q 028777 54 LYGVGREGLMLKALCMRLA-HLGI-STHLVFD-----MTTPPISSNDLLIASAGPGG-FST---VDAICSRARSYGAR-V 121 (204)
Q Consensus 54 i~G~G~S~~~a~~~~~~l~-~lg~-~~~~~~d-----~~~~~~~~~DlvI~iS~sG~-t~~---~~~~~~~ak~~g~~-v 121 (204)
+++.-.+..+|+.++.+|. .++. ....+.| .....+..+|++|+-|.+.. +.. ++-++..+|+.|++ +
T Consensus 3 i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i 82 (309)
T PRK01259 3 LFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRI 82 (309)
T ss_pred EEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceE
Confidence 4554456677777777664 1221 2222344 22344566889999886443 344 44556788999986 4
Q ss_pred EEEe
Q 028777 122 LLLT 125 (204)
Q Consensus 122 I~iT 125 (204)
.++.
T Consensus 83 ~lVi 86 (309)
T PRK01259 83 TAVI 86 (309)
T ss_pred EEEe
Confidence 4554
No 473
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=36.03 E-value=41 Score=24.76 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=27.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCC
Q 028777 94 LLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPE 129 (204)
Q Consensus 94 lvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~ 129 (204)
.++..+.||.|.-+-.+++.++++|.++..+=+.+.
T Consensus 4 ~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 4 QVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 467889999999999999999999998886655444
No 474
>PRK10637 cysG siroheme synthase; Provisional
Probab=36.02 E-value=1.4e+02 Score=26.56 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=41.4
Q ss_pred cEEEEecchhHHHHHHHHHHHhhcCCeEEEecC------CCCCCCCCCcEEEEEeCCCCCHHHHHHHH
Q 028777 51 SVFLYGVGREGLMLKALCMRLAHLGISTHLVFD------MTTPPISSNDLLIASAGPGGFSTVDAICS 112 (204)
Q Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d------~~~~~~~~~DlvI~iS~sG~t~~~~~~~~ 112 (204)
.+.+.+++... +.+.+.......|+.+...++ .....+..+++.|.||.+|.++.+...++
T Consensus 74 ~lv~~at~d~~-~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~~lr 140 (457)
T PRK10637 74 WLAIAATDDDA-VNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLR 140 (457)
T ss_pred EEEEECCCCHH-HhHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHHHHH
Confidence 45556666544 444455555666888877665 23345688999999999999887766553
No 475
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=35.91 E-value=2.3e+02 Score=23.65 Aligned_cols=102 Identities=10% Similarity=0.111 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc-----------C--CcEEEEecchhHHHHHHHHHHHhhcCCeE
Q 028777 12 LASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQ-----------K--GSVFLYGVGREGLMLKALCMRLAHLGIST 78 (204)
Q Consensus 12 ~~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~-----------a--~~I~i~G~G~S~~~a~~~~~~l~~lg~~~ 78 (204)
....+.+++.+-+..+++++.+.+++..+.+.+.+.+ . +|-++...|.-+..++ ++ |...
T Consensus 141 na~~~v~~I~~~L~~~dP~~~~~y~~N~~~y~~kL~~l~~~~~~~~~~~~~~r~~vt~h~af~Y~~~----~~---g~~~ 213 (303)
T COG0803 141 NAKIYAENIADALVELDPENKETYEKNAEAYLKKLNKLDEEAKAKLSKIPAQRDVVTSHGAFGYLAR----DY---GLKQ 213 (303)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcEEEeecchHHHHHh----cc---CCcc
Confidence 3446777888888888888777777777766655542 1 3444444433222222 11 2111
Q ss_pred EEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcch
Q 028777 79 HLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSS 133 (204)
Q Consensus 79 ~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l 133 (204)
..+.. +. -...+..+++.++.+..+++++++|..-++... +.
T Consensus 214 ~~i~~-----~~-------~~~e~s~~~l~~l~~~ik~~~i~~If~e~~~~~-~~ 255 (303)
T COG0803 214 VAIAG-----IS-------PEAEPSPKDLAKLVDLIKKKNIKAIFVESNVSS-KS 255 (303)
T ss_pred ccccC-----cC-------cccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-HH
Confidence 11110 00 013466788899999999999999999777766 44
No 476
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=35.63 E-value=2e+02 Score=21.85 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHh---cCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEe
Q 028777 35 LDIMVAELTNTAT---QKGSVFLYGVGREGLMLKALCMRLAHLGISTHLV 81 (204)
Q Consensus 35 ~~~~l~~~~~~i~---~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~ 81 (204)
+...++.+++.+. ..++|.+.|+|---.+...++..|..-|..+.+.
T Consensus 40 ~~~~~~~~~~~l~~~~~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~q 89 (155)
T PF12500_consen 40 LDAALQALAARLAAKRPGERVLVLGTGEFMYLPLLLAEELEQAGADVRYQ 89 (155)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEccchHHHHHHHHHHHHHhcCCceEEe
Confidence 3446666666664 6689999999997777777777887777666554
No 477
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.55 E-value=2.5e+02 Score=23.05 Aligned_cols=99 Identities=8% Similarity=0.115 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc--------------CCcEEEEecchhHHHHHHHHHHHhhcCCeE
Q 028777 13 ASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQ--------------KGSVFLYGVGREGLMLKALCMRLAHLGIST 78 (204)
Q Consensus 13 ~~~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~--------------a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~ 78 (204)
+..+.++|.+.+..+++.+++.+++..+.+.+.+.+ .++.++..-.. |.|.....|+..
T Consensus 110 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~~~~t~H~a-------f~Y~~~~ygl~~ 182 (276)
T cd01016 110 WKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKIAEIPEQQRVLVTAHDA-------FGYFGRAYGFEV 182 (276)
T ss_pred HHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhcCeEEEecCc-------HHHHHHHcCCeE
Confidence 356777888888888887666666666666554431 12344433222 222223345443
Q ss_pred EEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 028777 79 HLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 79 ~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
..+.. +.+ ......+.+.++.+.+|++|+++|..-...+.
T Consensus 183 ~~~~~-----~~~-------~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~ 222 (276)
T cd01016 183 KGLQG-----IST-------DSEAGLRDINELVDLIVERKIKAIFVESSVNQ 222 (276)
T ss_pred ecCcC-----CCc-------ccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 33110 000 11234678899999999999999988776655
No 478
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=35.54 E-value=2.3e+02 Score=22.62 Aligned_cols=83 Identities=11% Similarity=0.055 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCe--EEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 028777 38 MVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGIS--THLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRAR 115 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~--~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak 115 (204)
...++.+.+.+.+..+++.+|++......+...| ++. ++..+-........+.+ +.+..=....+.++++.++
T Consensus 24 ~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l---~~~~~~I~~NGa~i~d~~~~~~--l~~~~l~~~~~~~i~~~~~ 98 (272)
T PRK10530 24 ESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL---ALDTPAICCNGTYLYDYQAKKV--LEADPLPVQQALQVIEMLD 98 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc---CCCCCEEEcCCcEEEecCCCEE--EEecCCCHHHHHHHHHHHH
Confidence 3456666677778889999999887666555444 333 33322211111222333 3455556677788888899
Q ss_pred HcCCeEEEEe
Q 028777 116 SYGARVLLLT 125 (204)
Q Consensus 116 ~~g~~vI~iT 125 (204)
+++..+...+
T Consensus 99 ~~~~~~~~~~ 108 (272)
T PRK10530 99 EHQIHGLMYV 108 (272)
T ss_pred hCCcEEEEEc
Confidence 9888665543
No 479
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=35.51 E-value=1.5e+02 Score=24.59 Aligned_cols=71 Identities=14% Similarity=0.021 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHH
Q 028777 37 IMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAIC 111 (204)
Q Consensus 37 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~ 111 (204)
+.++++.+.+.+++.+.++|+...-..+..|......-|.+.+.++-. .. .-|-.+.+...|...+++..+
T Consensus 203 ~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~-~t---~~~~~~~~~i~g~~~evL~~l 273 (285)
T PRK05333 203 ERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLG-RT---RADPLLTLKVEASCAQALAAL 273 (285)
T ss_pred HHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCC-CC---CCCcceeEEEeCCHHHHHHHH
Confidence 367888889999999999888776666666665555667777777631 11 111223556667777766554
No 480
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=35.44 E-value=1.8e+02 Score=21.24 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhc--CCcEEEEecchh---HHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCH-HHH
Q 028777 35 LDIMVAELTNTATQ--KGSVFLYGVGRE---GLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFS-TVD 108 (204)
Q Consensus 35 ~~~~l~~~~~~i~~--a~~I~i~G~G~S---~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~-~~~ 108 (204)
...-++.++++.++ +.+|++.|.... ..-|+.+...+...|++ .+.+++-..+-.|. ++.
T Consensus 22 ~~~R~~~a~~L~~~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp--------------~~~I~~e~~s~~T~ena~ 87 (155)
T PF02698_consen 22 SRERLDEAARLYKAGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVP--------------EERIILEPKSTNTYENAR 87 (155)
T ss_dssp -HHHHHHHHHHHH-HHT--EEEE--SSTTHTS-HHHHHHHHHHHT-----------------GGGEEEE----SHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccc--------------hheeEccCCCCCHHHHHH
Confidence 34467778888774 788888884332 35667777777766743 23344444444444 345
Q ss_pred HHHHHHHHcCC-eEEEEecCCCC
Q 028777 109 AICSRARSYGA-RVLLLTAQPES 130 (204)
Q Consensus 109 ~~~~~ak~~g~-~vI~iT~~~~s 130 (204)
.+.+.++++|. +++.+|+....
T Consensus 88 ~~~~~~~~~~~~~iilVT~~~H~ 110 (155)
T PF02698_consen 88 FSKRLLKERGWQSIILVTSPYHM 110 (155)
T ss_dssp HHHHHHHT-SSS-EEEE--CCCH
T ss_pred HHHHHHHhhcCCeEEEECCHHHH
Confidence 55566777776 66777766554
No 481
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=35.44 E-value=1.2e+02 Score=24.53 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCC-HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 93 DLLIASAGPGGF-STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 93 DlvI~iS~sG~t-~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
|.+++-...|-+ ..+.+.++..|+...|+|..-++... +.+.+|..|...
T Consensus 29 dai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~--i~~~aDa~l~~s 79 (223)
T TIGR01768 29 DAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTN--VSRDADALFFPS 79 (223)
T ss_pred CEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccc--cCcCCCEEEEEE
Confidence 555555555555 45556788899999999999887765 889999988664
No 482
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=35.27 E-value=1.6e+02 Score=22.17 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=39.0
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEE-EEecC
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVL-LLTAQ 127 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI-~iT~~ 127 (204)
..++|..+-...++.....|..+|+++.. -+.|......++.+.++.++.+|++++ ++.+.
T Consensus 4 ~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~---------------~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~ 65 (150)
T PF00731_consen 4 AIIMGSTSDLPIAEEAAKTLEEFGIPYEV---------------RVASAHRTPERLLEFVKEYEARGADVIIAVAGM 65 (150)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTT-EEEE---------------EE--TTTSHHHHHHHHHHTTTTTESEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHHHcCCCEEE---------------EEEeccCCHHHHHHHHHHhccCCCEEEEEECCC
Confidence 45677666778999999999999966542 345555666666666666666666433 44443
No 483
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=35.26 E-value=45 Score=22.84 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhh
Q 028777 102 GGFSTVDAICSRARSYGARVLLLTAQPESGSSVK 135 (204)
Q Consensus 102 G~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~ 135 (204)
--.+.+.+.++.++++|.+++.+|+.... .+..
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~-~~~~ 56 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRR-EVLE 56 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHH-HHHH
Confidence 34567888999999999999999987655 4443
No 484
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=35.19 E-value=46 Score=22.14 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=23.8
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
.+.|++|+.-..-...++.+.+ .....+..+|.++.
T Consensus 60 ~~advvilav~p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVKPQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEECHHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 3568888888777777777777 44556666777763
No 485
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=35.13 E-value=2.4e+02 Score=24.46 Aligned_cols=74 Identities=12% Similarity=-0.019 Sum_probs=44.5
Q ss_pred CcEEEEecchhHHHHHHHHHHHhhcCCeEEEecC-CCCCCCC--CCcEEEEEeCCC-CC---HHHHHHHHHHHHcCCeEE
Q 028777 50 GSVFLYGVGREGLMLKALCMRLAHLGISTHLVFD-MTTPPIS--SNDLLIASAGPG-GF---STVDAICSRARSYGARVL 122 (204)
Q Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-~~~~~~~--~~DlvI~iS~sG-~t---~~~~~~~~~ak~~g~~vI 122 (204)
.+|.++-+|....+ .+.|...|..+..+.. .....+. +=|- |++|..+ .. ...+++++.+.+++.|++
T Consensus 178 ~~I~viD~G~k~ni----vr~L~~~G~~v~vvp~~~~~~~i~~~~~DG-IvLSgGPgdp~~~~~~~~~i~~~~~~~~Pil 252 (360)
T PRK12564 178 YKVVAIDFGVKRNI----LRELAERGCRVTVVPATTTAEEILALNPDG-VFLSNGPGDPAALDYAIEMIRELLEKKIPIF 252 (360)
T ss_pred CEEEEEeCCcHHHH----HHHHHHCCCEEEEEeCCCCHHHHHhcCCCE-EEEeCCCCChHHHHHHHHHHHHHHHcCCeEE
Confidence 57899998865543 4455556888777652 1111111 1233 5566543 32 235667788888899999
Q ss_pred EEecCC
Q 028777 123 LLTAQP 128 (204)
Q Consensus 123 ~iT~~~ 128 (204)
+|+-..
T Consensus 253 GIClG~ 258 (360)
T PRK12564 253 GICLGH 258 (360)
T ss_pred EECHHH
Confidence 998543
No 486
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.08 E-value=77 Score=24.31 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCC
Q 028777 105 STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPA 145 (204)
Q Consensus 105 ~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~ 145 (204)
..+.+.++..++.|.++|.+|...+. .+.+.||.++.+..
T Consensus 145 ~~l~~~l~~~~~~~~tiiivtH~~~~-~~~~~~d~i~~l~~ 184 (192)
T cd03232 145 YNIVRFLKKLADSGQAILCTIHQPSA-SIFEKFDRLLLLKR 184 (192)
T ss_pred HHHHHHHHHHHHcCCEEEEEEcCChH-HHHhhCCEEEEEcC
Confidence 45666777776778888888877543 35788999887743
No 487
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.04 E-value=81 Score=20.85 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=31.1
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
+...+.+++-..+....+.++.+.+++.|.+++-+|+++
T Consensus 38 ~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 38 KDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred CeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCCH
Confidence 566788888877656778888999999999988877663
No 488
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=34.98 E-value=64 Score=24.97 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 105 STVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 105 ~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
..+.++++..++.|.++|.+|...+ .+.++||.++.+.
T Consensus 172 ~~l~~~l~~~~~~~~tvi~~sh~~~--~~~~~~d~i~~l~ 209 (213)
T cd03262 172 GEVLDVMKDLAEEGMTMVVVTHEMG--FAREVADRVIFMD 209 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhCCEEEEEe
Confidence 4566777777667877777775543 4778999888774
No 489
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=34.97 E-value=73 Score=27.18 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=34.7
Q ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCC
Q 028777 87 PPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPE 129 (204)
Q Consensus 87 ~~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~ 129 (204)
.+.++++++++-..+|-.-.+ +.+.||-+|+++|+|.+.++
T Consensus 146 gqpk~GetvvVSaAaGaVGsv--vgQiAKlkG~rVVGiaGg~e 186 (340)
T COG2130 146 GQPKAGETVVVSAAAGAVGSV--VGQIAKLKGCRVVGIAGGAE 186 (340)
T ss_pred cCCCCCCEEEEEecccccchH--HHHHHHhhCCeEEEecCCHH
Confidence 456789999999999998777 46778899999999998754
No 490
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=34.97 E-value=1.2e+02 Score=19.06 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=34.8
Q ss_pred HHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEeCCCCCH--HHHHHHHHHHHcCCeEEEE
Q 028777 67 LCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFS--TVDAICSRARSYGARVLLL 124 (204)
Q Consensus 67 ~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS~sG~t~--~~~~~~~~ak~~g~~vI~i 124 (204)
|...|...|..+..........-.+++.+|+++..+... +-.+.+...-++|-+++..
T Consensus 10 ~~~~L~~~g~~v~~~~~~~~~l~~~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 10 LYQLLEEQGVKVERWRKPYEALEADDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHCCCeeEEecccHHHhCCCCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 445566678888765541111113666777777774442 5566666667788877754
No 491
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=34.95 E-value=1.5e+02 Score=28.24 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=33.5
Q ss_pred CCCCcEEEEEeC-CCCCHH-HH---HHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeC
Q 028777 89 ISSNDLLIASAG-PGGFST-VD---AICSRARSYGARVLLLTAQPESGSSVKHASVVAYVP 144 (204)
Q Consensus 89 ~~~~DlvI~iS~-sG~t~~-~~---~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~ 144 (204)
+..-|++|++.. .+.+.. +. ..++.+++.|+++|.|-. -.+ .-++.+|..|.+-
T Consensus 197 ~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP-~~t-~Ta~~ad~~l~ir 255 (765)
T COG0243 197 IENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDP-RRT-ETAALADLWLPIR 255 (765)
T ss_pred HhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECC-CCC-hhHHhhCCccccC
Confidence 344566666654 444233 33 255666778899777764 445 6789999966663
No 492
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=34.91 E-value=2e+02 Score=26.41 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCcEEEEec-chhHHHHHHHHHHHhhcCCeEEEec-C--------CCCCCCCCCcEEEEEeCCCCCHHH
Q 028777 38 MVAELTNTATQKGSVFLYGV-GREGLMLKALCMRLAHLGISTHLVF-D--------MTTPPISSNDLLIASAGPGGFSTV 107 (204)
Q Consensus 38 ~l~~~~~~i~~a~~I~i~G~-G~S~~~a~~~~~~l~~lg~~~~~~~-d--------~~~~~~~~~DlvI~iS~sG~t~~~ 107 (204)
.-+.+++.|++.+-=++||. |.+-.---+ .|..-+++.+... | .+...-++=-++++.|-.|-|.-
T Consensus 4 ga~~lv~~L~~~GV~~VFGiPG~~i~~~~d---al~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~- 79 (550)
T COG0028 4 GAEALVEALEANGVDTVFGIPGGSILPLYD---ALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNL- 79 (550)
T ss_pred HHHHHHHHHHHcCCcEEEeCCCccHHHHHH---HHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHH-
Confidence 45678899998888889998 555433222 2222266655543 3 22333345568888888887654
Q ss_pred HHHHHHHHHcCCeEEEEecCCCC
Q 028777 108 DAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 108 ~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
+..+-.|...++|+|+||+...+
T Consensus 80 ~tgla~A~~d~~Pll~itGqv~~ 102 (550)
T COG0028 80 LTGLADAYMDSVPLLAITGQVPT 102 (550)
T ss_pred HHHHHHHHhcCCCEEEEeCCccc
Confidence 45666778889999999997655
No 493
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=34.86 E-value=39 Score=25.51 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhc-CCeEEEecC-C-------CCCCCCCCcEEEEEeCCC-CCHHHH
Q 028777 39 VAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHL-GISTHLVFD-M-------TTPPISSNDLLIASAGPG-GFSTVD 108 (204)
Q Consensus 39 l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~d-~-------~~~~~~~~DlvI~iS~sG-~t~~~~ 108 (204)
-+.+++.|++.+-=++||.-.+.... +...|..- |++++.... . -...++ +-..+++..+| .....+
T Consensus 4 ~~~l~~~L~~~Gv~~vfgvpG~~~~~--l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 4 AEALAEALKANGVTHVFGVPGSGNLP--LLDALEKSPGIRFIPVRHEQGAAFMADGYARAT-GRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp HHHHHHHHHHTT-SEEEEE--GGGHH--HHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHH-SSEEEEEEETTHHHHTTH
T ss_pred HHHHHHHHHHCCCeEEEEEeChhHhH--HHHHhhhhcceeeecccCcchhHHHHHHHHHhh-ccceEEEeecccchHHHH
Confidence 46678888888777888885554333 44445444 677777554 0 011122 33444444443 345566
Q ss_pred HHHHHHHHcCCeEEEEecCCCC
Q 028777 109 AICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 109 ~~~~~ak~~g~~vI~iT~~~~s 130 (204)
..+-.|...++|+|.|++....
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~ 102 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPS 102 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSG
T ss_pred HHHhhcccceeeEEEEecccch
Confidence 6666788889999999998776
No 494
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=34.84 E-value=1.7e+02 Score=25.80 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=49.6
Q ss_pred EEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcEEEEEe--CCCCCHH-HHHHHHHHHHcCCeEEEEecCC
Q 028777 52 VFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASA--GPGGFST-VDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 52 I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~DlvI~iS--~sG~t~~-~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
|.-+||-....=++.+...|...|..... ...+-|++|+=| .+..+.. ..+.++.++++|++ |.+++..
T Consensus 4 i~t~GC~~N~~ds~~~~~~l~~~g~~~~~-------~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~-vvvgGc~ 75 (430)
T TIGR01125 4 FISLGCPKNLVDSEVMLGILREAGYEVTP-------NYEDADYVIVNTCGFIEDARQESIDTIGELADAGKK-VIVTGCL 75 (430)
T ss_pred EEECCCCCcHHHHHHHHHHHHHCcCEECC-------CcccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCC-EEEECCc
Confidence 56788888888888888999888854222 123469999985 5555555 77888888888886 5555554
Q ss_pred CC
Q 028777 129 ES 130 (204)
Q Consensus 129 ~s 130 (204)
-+
T Consensus 76 a~ 77 (430)
T TIGR01125 76 VQ 77 (430)
T ss_pred cc
Confidence 33
No 495
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=34.82 E-value=3.5e+02 Score=24.52 Aligned_cols=28 Identities=11% Similarity=-0.108 Sum_probs=18.8
Q ss_pred CeEEEEecCCCCcchhhccCeEEEeCCcc
Q 028777 119 ARVLLLTAQPESGSSVKHASVVAYVPAQT 147 (204)
Q Consensus 119 ~~vI~iT~~~~s~~l~~~ad~~l~~~~~~ 147 (204)
+..+...+.--+ +-+++||++|+..+.-
T Consensus 386 ~~~~V~~d~~~t-eTa~~ADiVLP~~~~~ 413 (523)
T cd02757 386 IPFHVHLSPFMS-ETTYFADIVLPDGHHF 413 (523)
T ss_pred CCeEEEEeCCcC-chHhhCCEEecCCChh
Confidence 334444445556 7899999999886543
No 496
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=34.77 E-value=2.9e+02 Score=23.59 Aligned_cols=88 Identities=11% Similarity=0.154 Sum_probs=47.4
Q ss_pred HHHHHHHHHh--cCCcEEEE-ecchhHHHHHHHHHHHhh-cCCeEEEecC----------------CCCCCCCCCcEEEE
Q 028777 38 MVAELTNTAT--QKGSVFLY-GVGREGLMLKALCMRLAH-LGISTHLVFD----------------MTTPPISSNDLLIA 97 (204)
Q Consensus 38 ~l~~~~~~i~--~a~~I~i~-G~G~S~~~a~~~~~~l~~-lg~~~~~~~d----------------~~~~~~~~~DlvI~ 97 (204)
.++++.+.+. ..++++++ +.+-.....+.+...|.. .+.....+.+ .........|++|+
T Consensus 10 ~l~~l~~~~~~~~~~k~livtd~~v~~~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIa 89 (344)
T cd08169 10 VLESVESYTTRDLFDQYFFISDSGVADLIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVA 89 (344)
T ss_pred hHHHHHHHHHhcCCCeEEEEECccHHHHHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 3444444443 33566555 444445566666677765 6666666653 01122445788876
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCeEEEEec
Q 028777 98 SAGPGGFSTVDAICSRARSYGARVLLLTA 126 (204)
Q Consensus 98 iS~sG~t~~~~~~~~~ak~~g~~vI~iT~ 126 (204)
+- .|..-++..++-..-.+|.+.|.|=.
T Consensus 90 iG-GGsv~D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 90 VG-GGATGDVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred EC-CcHHHHHHHHHHHHhccCCcEEEecC
Confidence 65 34444444443333357999887743
No 497
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.72 E-value=1.9e+02 Score=26.06 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhcCCcE-EEEe---cchh---HHHHHHHHHHHhhcCCeEEEecCC------------CCCCCCCCc
Q 028777 33 PPLDIMVAELTNTATQKGSV-FLYG---VGRE---GLMLKALCMRLAHLGISTHLVFDM------------TTPPISSND 93 (204)
Q Consensus 33 ~~~~~~l~~~~~~i~~a~~I-~i~G---~G~S---~~~a~~~~~~l~~lg~~~~~~~d~------------~~~~~~~~D 93 (204)
|.-++-++.+.+.+.+.+-- .+-| .|.. .-+.+.|..+...-|+.++-+.|. ..... ...
T Consensus 69 edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~-G~~ 147 (468)
T PRK12581 69 EDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKT-GKE 147 (468)
T ss_pred CCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHc-CCE
Confidence 34566888888888765322 2223 3332 367777888888889988876551 01111 124
Q ss_pred EEEEEeCCCCCHH----HHHHHHHHHHcCCeEEEEecCCCC
Q 028777 94 LLIASAGPGGFST----VDAICSRARSYGARVLLLTAQPES 130 (204)
Q Consensus 94 lvI~iS~sG~t~~----~~~~~~~ak~~g~~vI~iT~~~~s 130 (204)
+...+++++.... .++.++.+.+.|+..|.|.+..+.
T Consensus 148 ~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~ 188 (468)
T PRK12581 148 AQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGI 188 (468)
T ss_pred EEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4466666665544 788899999999999999988765
No 498
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=34.67 E-value=1.9e+02 Score=25.05 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=57.0
Q ss_pred HHhcCCcEEEEecchh----HHHHHHHHHHHhhcCCeEEEe---cC--C---------CCCCCCCCcEEEEEeCCCCCHH
Q 028777 45 TATQKGSVFLYGVGRE----GLMLKALCMRLAHLGISTHLV---FD--M---------TTPPISSNDLLIASAGPGGFST 106 (204)
Q Consensus 45 ~i~~a~~I~i~G~G~S----~~~a~~~~~~l~~lg~~~~~~---~d--~---------~~~~~~~~DlvI~iS~sG~t~~ 106 (204)
.|.+|+.|.--|.|-- ..+.+.|+..|. -.+-.- -| | .-..+. -+|.|.+-.||..+.
T Consensus 233 ~L~~A~vVVsgGRGv~~~en~~l~eeLA~~LG---aavGaSRp~vD~GW~p~~~QIGqTGk~V~-P~lYIA~GISGAiQH 308 (356)
T PLN00022 233 DLGSAKVVVTGGRGLKSAENFKMLEKLADKLG---GAVGASRAAVDAGFVPNDLQVGQTGKIVA-PELYIAVGISGAIQH 308 (356)
T ss_pred CcccCCEEEECCCccCCHHHHHHHHHHHHHhC---CceeccHHHHhCCCCChHheeccCCCCcC-CcEEEEEecchHHHH
Confidence 3668888888888773 245555655553 111111 11 1 112333 479999999998777
Q ss_pred HHHHHHHHHHcCC-eEEEEecCCCCcchhhccCeEEEe
Q 028777 107 VDAICSRARSYGA-RVLLLTAQPESGSSVKHASVVAYV 143 (204)
Q Consensus 107 ~~~~~~~ak~~g~-~vI~iT~~~~s~~l~~~ad~~l~~ 143 (204)
+.-+ +++ .||+|=..++. |+.+.||+-+.-
T Consensus 309 ~~Gm------~~s~~IVAIN~D~~A-PIF~~ADygIVg 339 (356)
T PLN00022 309 LAGM------KDSKVIVAINKDADA-PIFQVADYGLVA 339 (356)
T ss_pred Hhhc------ccCCEEEEECCCCCC-CchhhcCeeEee
Confidence 6522 223 48899999999 999999998844
No 499
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.67 E-value=70 Score=21.20 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCC
Q 028777 90 SSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQP 128 (204)
Q Consensus 90 ~~~DlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~ 128 (204)
..+.+++.+...+. +..++.+..++.|.+..-+|+++
T Consensus 39 ~~a~vlvGi~~~~~--~~~~l~~~l~~~g~~~~dls~ne 75 (81)
T cd04907 39 DYGRVLVGIQVPDA--DLDELKERLDALGYPYQEETDNP 75 (81)
T ss_pred CceeEEEEEEeChH--HHHHHHHHHHHcCCCeEECCCCH
Confidence 45679999998865 88899999999999999998763
No 500
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.65 E-value=1.5e+02 Score=20.24 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=23.0
Q ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHc--CCeEEEEecCCC
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSY--GARVLLLTAQPE 129 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~t~~~~~~~~~ak~~--g~~vI~iT~~~~ 129 (204)
.+.+-+.+|+.+ +....-+.++..+|+. ..++++...+++
T Consensus 59 ~i~~a~~vv~~~--~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 59 GIEKADAVVILT--DDDEENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp TGGCESEEEEES--SSHHHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CccccCEEEEcc--CCHHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 334444444443 3556667777788872 357777765543
Done!