Query 028777
Match_columns 204
No_of_seqs 137 out of 1553
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 18:12:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028777.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2271-2275//hhsearch_pdb/028777hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vim_A Hypothetical protein AF 1.0 1 1 199.2 18.0 185 7-204 12-196 (200)
2 1m3s_A Hypothetical protein YC 1.0 1 1 195.4 19.7 184 8-204 3-186 (186)
3 3fxa_A SIS domain protein; str 1.0 1 1 183.6 18.3 178 6-202 8-191 (201)
4 3etn_A Putative phosphosugar i 1.0 1 1 182.9 22.1 180 4-202 16-207 (220)
5 1jeo_A MJ1247, hypothetical pr 1.0 1 1 176.7 19.0 175 7-203 5-179 (180)
6 3sho_A Transcriptional regulat 1.0 1 1 167.2 16.2 166 5-195 2-173 (187)
7 2xhz_A KDSD, YRBH, arabinose 5 1.0 1 1 159.3 19.3 165 6-190 13-183 (183)
8 2yva_A DNAA initiator-associat 1.0 1 1 152.8 16.9 160 6-189 2-190 (196)
9 1x92_A APC5045, phosphoheptose 1.0 1 1 151.6 15.3 159 7-189 7-194 (199)
10 3trj_A Phosphoheptose isomeras 1.0 1 1 148.5 12.3 159 7-189 8-195 (201)
No 1
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=1.00 E-value=1 Score=199.22 Aligned_cols=185 Identities=26% Similarity=0.440 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 25999999999999988639899999998999999999983499299994051199999999999616975798368889
Q 028777 7 SSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTT 86 (204)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~ 86 (204)
.+...+++.+.+++.++++.++.+ .++++++.|.++++|+++|.|.|+.+|++|+++|.++|+++....|...
T Consensus 12 ~~~~~~~~~~~~~i~~t~~~l~~~-------~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~ 84 (200)
T 1vim_A 12 MSLLRFLEVVSEHIKNLRNHIDLE-------TVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVT 84 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 107899999999999999846999-------9999999985399799997068999999999999965986999077543
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999948999829999889999999998869929998058998641110596899088435699753565789986566
Q 028777 87 PPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPM 166 (204)
Q Consensus 87 ~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (204)
..++++|++|+||.||++++++++++.|+++|+++|+||++++| |++++||++|.++........+ ...+..|+
T Consensus 85 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s-~La~~ad~~l~~~~~~~~~~~~-----~~~~~~~~ 158 (200)
T 1vim_A 85 PRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDS-SLAKMADVVMVVKGKMKQERDE-----ILSQLAPL 158 (200)
T ss_dssp CCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTS-HHHHHCSEEEECCSSCTTCCHH-----HHHHHSGG
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHCCEEEEECCCCCCCCCC-----CCCCCCCC
T ss_conf 57899999999838999089999999999888969999799998-0798699999977865336776-----43011556
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Q ss_conf 42899999999999999999991999689984147899
Q 028777 167 GSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204 (204)
Q Consensus 167 ~s~~~~~~~~~~d~l~~~l~~~~g~~~~~~~~~~~~~~ 204 (204)
.+.++++.++++|+|+..++.+.+.+++.++++|+++|
T Consensus 159 ~s~~~~~~~~lld~L~~~~~~~~~~~~~~~~~~h~~le 196 (200)
T 1vim_A 159 GTMFELTAMIFLDALVAEIMMQKHLTEKDLEARHAVLE 196 (200)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 44999999999999999999982999999998600332
No 2
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=1.00 E-value=1 Score=195.44 Aligned_cols=184 Identities=29% Similarity=0.507 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 59999999999999886398999999989999999999834992999940511999999999996169757983688899
Q 028777 8 SMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTP 87 (204)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~ 87 (204)
.++++.+.+.++++++.+.++.+ .++++++.|.++++|+++|.|.|+.+|++++++|.++|+++....+....
T Consensus 3 ~~~~~~~~~~~~l~~t~~~l~~~-------~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~ 75 (186)
T 1m3s_A 3 KTTEYVAEILNELHNSAAYISNE-------EADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTP 75 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHH-------HHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 47999999999999998735899-------99999999973893999951789999999999999669869980742235
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999489998299998899999999988699299980589986411105968990884356997535657899865664
Q 028777 88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMG 167 (204)
Q Consensus 88 ~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (204)
.++++|++|+||.||++++++++++.|+++|+++|+||++++| |++++||++|.++........ +...+..|+.
T Consensus 76 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-~l~~~ad~~l~~~~~~~~~~~-----~~~~s~~~~~ 149 (186)
T 1m3s_A 76 PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPES-SIGKQADLIIRMPGSPKDQSN-----GSYKTIQPMG 149 (186)
T ss_dssp CCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTS-HHHHHCSEEEECSCCSCC----------CCCCSSTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-CHHHHCCEEEEECCCCCCCCC-----CCCCCCCCCC
T ss_conf 7899999999809989189999999999879989999799997-068859999996786655778-----7643446576
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Q ss_conf 2899999999999999999991999689984147899
Q 028777 168 SVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204 (204)
Q Consensus 168 s~~~~~~~~~~d~l~~~l~~~~g~~~~~~~~~~~~~~ 204 (204)
+.++++.++++|+|+..++.+.|.+++.++.+|+++|
T Consensus 150 s~~~~~~~~~~d~L~~~~~~~~~~~~~~~~~~h~~le 186 (186)
T 1m3s_A 150 SLFEQTLLLFYDAVILKLMEKKGLDSETMFTHHANLE 186 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCTTTCCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 4999999999999999999983999899987554789
No 3
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=1.00 E-value=1 Score=183.61 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHCCCEEEEECC-
Q ss_conf 225999999999999988639899999998999999999983499-299994051199999999999616975798368-
Q 028777 6 SSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKG-SVFLYGVGREGLMLKALCMRLAHLGISTHLVFD- 83 (204)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~-~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d- 83 (204)
...++.+++...+.+.++.+.++++ .++++++.|.+++ +|+++|.|.|..+|++++++|.++|+++....+
T Consensus 8 ~~i~~~~~~~~~~~l~~t~~~l~~~-------~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~ 80 (201)
T 3fxa_A 8 LDNIHQTWQEEANAISRLPEVTSEE-------ALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPS 80 (201)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCHH-------HHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf 9999999999999999999865999-------999999999826991899986489999999999997169927983856
Q ss_pred ----CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf ----8899999994899982999988999999999886992999805899864111059689908843569975356578
Q 028777 84 ----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEK 159 (204)
Q Consensus 84 ----~~~~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~ad~~i~~~~~~~~~~~~~~~~~~ 159 (204)
.....++++|++|+||.||++++++++++.|+++|+++|+||++++| |++++||++|.++......
T Consensus 81 ~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-~l~~~ad~~l~~~~~~e~~--------- 150 (201)
T 3fxa_A 81 DAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDS-VIAKEADIFFPVSVSKEPD--------- 150 (201)
T ss_dssp HHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTS-HHHHHCSEEEECCCSCCCS---------
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHCCEEEECCCCCCCC---------
T ss_conf 787655532899998999818999989999999999869959999799998-5688699999848875466---------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
Q ss_conf 9986566428999999999999999999919996899841478
Q 028777 160 SRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTN 202 (204)
Q Consensus 160 ~~~~~~~~s~~~~~~~~~~d~l~~~l~~~~g~~~~~~~~~~~~ 202 (204)
++.+....+..+.++++|+|+..++.+.|.++++++.+||.
T Consensus 151 --~~~~~~~~s~~~~l~~~d~L~~~l~~~~g~~~~~~~~~H~~ 191 (201)
T 3fxa_A 151 --PFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPG 191 (201)
T ss_dssp --TTSCSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCC
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
T ss_conf --36777619999999999999999998609998998651999
No 4
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=1.00 E-value=1 Score=182.87 Aligned_cols=180 Identities=16% Similarity=0.240 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHHCCCEE
Q ss_conf 672259999999999999886398999999989999999999834-----992999940511999999999996169757
Q 028777 4 ENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQ-----KGSVFLYGVGREGLMLKALCMRLAHLGIST 78 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~-----a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~ 78 (204)
+..-.++.+.+.+.++++.+.+.++.+ .++++++.|.+ +++|+++|.|.|+.+|++++++|.++|+++
T Consensus 16 ~~~~~~~~~~~~~~~~i~~t~~~ld~~-------~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~ 88 (220)
T 3etn_A 16 YFQGMIESIQELLQKEAQAVLNIPVTD-------AYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPS 88 (220)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCCCCT-------HHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCE
T ss_conf 999999999999999999999712899-------9999999998676526998999983589999999999999469938
Q ss_pred EEECCC-----CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH--CCCEEEEEECCCCCCCHHHCCCEEEEECCCCCCCC
Q ss_conf 983688-----89999999489998299998899999999988--69929998058998641110596899088435699
Q 028777 79 HLVFDM-----TTPPISSNDLLIASAGPGGFSTVDAICSRARS--YGARVLLLTAQPESGSSVKHASVVAYVPAQTMADD 151 (204)
Q Consensus 79 ~~~~d~-----~~~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~--~g~~iI~IT~~~~s~~l~~~ad~~i~~~~~~~~~~ 151 (204)
....+. ....++++|++|+||.||++++++++++.|++ +|+++|+||++++| |++++||++|.++......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s-~La~~aD~~l~~~~~~e~~- 166 (220)
T 3etn_A 89 VFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDS-PLASESDVCLSTGHPAEVC- 166 (220)
T ss_dssp EECCTTGGGBTGGGGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTS-HHHHHSSEEEECCCCCCCS-
T ss_pred EEECCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-HHHHHCCEEEECCCCCCCC-
T ss_conf 99487789875650589999999981999988999999999850799829999799989-3688589999869985456-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
Q ss_conf 753565789986566428999999999999999999919996899841478
Q 028777 152 DDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTN 202 (204)
Q Consensus 152 ~~~~~~~~~~~~~~~~s~~~~~~~~~~d~l~~~l~~~~g~~~~~~~~~~~~ 202 (204)
...+.|+.+. .+.++++|+|+..++.+.|.+++++..+||.
T Consensus 167 --------~~~~~~~~S~--~~~l~lld~L~~~l~~~~g~~~~~~~~~H~~ 207 (220)
T 3etn_A 167 --------TLGMTPTTST--TVMTVIGDILVVQTMKRTEFTIEEYSKRHHG 207 (220)
T ss_dssp --------TTSCSSSHHH--HHHHHHHHHHHHHHHHHHTCCHHHHHTTBCG
T ss_pred --------CCCCCCHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
T ss_conf --------5566565999--9999999999999999829999999741999
No 5
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=1.00 E-value=1 Score=176.70 Aligned_cols=175 Identities=22% Similarity=0.413 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 25999999999999988639899999998999999999983499299994051199999999999616975798368889
Q 028777 7 SSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTT 86 (204)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~ 86 (204)
..++.+.+...++++++.+.++.+ .++++++.+.++++|+++|.|.|+.+|++++++|.++|+++....|...
T Consensus 5 ~~~~~~~~~~~~~i~~t~~~l~~~-------~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~ 77 (180)
T 1jeo_A 5 EELDIVSNNILILKKFYTNDEWKN-------KLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTT 77 (180)
T ss_dssp HHHHHHHHHHHGGGHHHHCHHHHH-------HHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 999999999999999999847899-------9999999998089799995067899999999999986985999279754
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999948999829999889999999998869929998058998641110596899088435699753565789986566
Q 028777 87 PPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPM 166 (204)
Q Consensus 87 ~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (204)
..++++|++|+||.||++++++++++.|+++|+++|+||+++++ +++.||+++.++.... .+.|+
T Consensus 78 ~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s--l~~~ad~~l~~~~~~~-------------~~~~~ 142 (180)
T 1jeo_A 78 PSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN--VVEFADLTIPLEVKKS-------------KYLPM 142 (180)
T ss_dssp CCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG--GGGGCSEEEECCCCCB-------------TTBCT
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHCCEEEEECCCCC-------------CCCCC
T ss_conf 66899978999828979689999999999879919999089772--8996988999578654-------------40654
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
Q ss_conf 4289999999999999999999199968998414789
Q 028777 167 GSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNL 203 (204)
Q Consensus 167 ~s~~~~~~~~~~d~l~~~l~~~~g~~~~~~~~~~~~~ 203 (204)
.+.+.++.++++|+|+..++.+.|.++..+..+|+++
T Consensus 143 ~s~~~~~~~~~ld~L~~~~~~~~~~~~~~~~~~h~~~ 179 (180)
T 1jeo_A 143 GTTFEETALIFLDLVIAEIMKRLNLDESEIIKRHCNL 179 (180)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 2089999999999999999998499989998647366
No 6
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=1.00 E-value=1 Score=167.22 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEEC-C
Q ss_conf 722599999999999998863989999999899999999998349929999405119999999999961697579836-8
Q 028777 5 NSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVF-D 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~-d 83 (204)
....++++++.+.+.+.++.+.++.+ .++++++.|.++++|+++|.|.|+.+|++++++|.++|+++.... +
T Consensus 2 ~~~i~~~~~~~~~~~l~~t~~~l~~~-------~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~ 74 (187)
T 3sho_A 2 RQQLPVQVFTNDIENLNQTLNQTQPE-------AIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEG 74 (187)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTCCHH-------HHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 67899999999999999999858999-------99999999971897999954730899999999999638987996588
Q ss_pred -----CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf -----889999999489998299998899999999988699299980589986411105968990884356997535657
Q 028777 84 -----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKE 158 (204)
Q Consensus 84 -----~~~~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~ad~~i~~~~~~~~~~~~~~~~~ 158 (204)
.....++++|++|+||.||++++++++++.|+++|+++|+||+++++ |++++||++|.++.....
T Consensus 75 ~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-~l~~~ad~~l~~~~~~~~--------- 144 (187)
T 3sho_A 75 GSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVS-PPARIADHVLVAATRGVG--------- 144 (187)
T ss_dssp THHHHHHHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTS-HHHHHCSEEEECCCCCSS---------
T ss_pred CHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHCCEEEEECCCCCC---------
T ss_conf 4569999856999988999838978879999999999879979998499989-426657589995479876---------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 8998656642899999999999999999991999689
Q 028777 159 KSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEA 195 (204)
Q Consensus 159 ~~~~~~~~~s~~~~~~~~~~d~l~~~l~~~~g~~~~~ 195 (204)
+..+. .+.++++|+|+..+..+.+....+
T Consensus 145 ------~~~S~--~~~~~l~d~L~~~~~~~~~~~~~~ 173 (187)
T 3sho_A 145 ------HSLSP--VGLIAVVNLLLAEIAVREPERALA 173 (187)
T ss_dssp ------SSCCC--HHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ------CCCCH--HHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf ------53307--589999999999999858199999
No 7
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=1.00 E-value=1 Score=159.29 Aligned_cols=165 Identities=19% Similarity=0.188 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHCCCEEEEECC-
Q ss_conf 225999999999999988639899999998999999999983499-299994051199999999999616975798368-
Q 028777 6 SSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKG-SVFLYGVGREGLMLKALCMRLAHLGISTHLVFD- 83 (204)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~-~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d- 83 (204)
...++++++...+.++++.+.+++ .++++++.+.+++ +|+++|.|.|+.+|++++++|.++|+++....+
T Consensus 13 ~~~~~~~~~~~~~~l~~t~~~~~~--------~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~ 84 (183)
T 2xhz_A 13 QQAGKEVLAIERECLAELDQYINQ--------NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPG 84 (183)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTSSH--------HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 999999999999999999999999--------999999999948996999961577999999999997459638983736
Q ss_pred ----CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf ----8899999994899982999988999999999886992999805899864111059689908843569975356578
Q 028777 84 ----MTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEK 159 (204)
Q Consensus 84 ----~~~~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~ad~~i~~~~~~~~~~~~~~~~~~ 159 (204)
.....++++|++|+||.||++++++++++.|+++|+++|+||++++| |++++||+++.++.......
T Consensus 85 ~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-~la~~ad~~l~~~~~~e~~~-------- 155 (183)
T 2xhz_A 85 EAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPES-SMARAADVHLCVKVAKEACP-------- 155 (183)
T ss_dssp HHHHHTSTTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTS-HHHHHSSEEEECCCSCCSST--------
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHCCEEEEECCCCCCCC--------
T ss_conf 776203205899999999819989889999999999779989999799998-26885899999178754565--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9986566428999999999999999999919
Q 028777 160 SRPLMPMGSVYEGAMFVLFEMVVYKLGEALG 190 (204)
Q Consensus 160 ~~~~~~~~s~~~~~~~~~~d~l~~~l~~~~g 190 (204)
....++.+. .+.++++|+|+..++.+.|
T Consensus 156 -~~~~~~~S~--~~~~~~~d~L~~~~~~~~~ 183 (183)
T 2xhz_A 156 -LGLAPTSST--TATLVMGDALAVALLKARG 183 (183)
T ss_dssp -TCSSCCHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred -CCCCCCHHH--HHHHHHHHHHHHHHHHHCC
T ss_conf -578861678--8999999999999997529
No 8
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=1.00 E-value=1 Score=152.79 Aligned_cols=160 Identities=9% Similarity=0.084 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH------HCCCEEE
Q ss_conf 2259999999999999886398999999989999999999834992999940511999999999996------1697579
Q 028777 6 SSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA------HLGISTH 79 (204)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~------~lg~~~~ 79 (204)
...++++++...+.+.++.+.+++ .+++.++++++.+.++++|+++|.|.|+.+|+++.++|. +.|+++.
T Consensus 2 ~~~~~~~~~~~~~~l~~t~~~l~~----~i~~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~ 77 (196)
T 2yva_A 2 QERIKACFTESIQTQIAAAEALPD----AISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAI 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHH----HHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 368999999999999999985289----9999999999999869989998286515889999999846034467777657
Q ss_pred EEC-----------CCC---------CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHC---
Q ss_conf 836-----------888---------999999948999829999889999999998869929998058998641110---
Q 028777 80 LVF-----------DMT---------TPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKH--- 136 (204)
Q Consensus 80 ~~~-----------d~~---------~~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~--- 136 (204)
... |.. ...++++|++|+||.||++++++++++.||++|+++|+||++++| |++++
T Consensus 78 ~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s-~la~~~~~ 156 (196)
T 2yva_A 78 ALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG-ELAGLLGP 156 (196)
T ss_dssp ESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH-HHHTTCCT
T ss_pred EECCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHCCCC
T ss_conf 60585588888861788889999999836999999999818999989999999999879979999679973-46650367
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59689908843569975356578998656642899999999999999999991
Q 028777 137 ASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEAL 189 (204)
Q Consensus 137 ad~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~l~~~l~~~~ 189 (204)
||++|.++..+. +....+.++++|+|+..+..+.
T Consensus 157 ad~~l~~~~~~~-------------------~~~~~~~l~~~~~L~~~~~~~l 190 (196)
T 2yva_A 157 QDVEIRIPSHRS-------------------ARIQEMHMLTVNCLCDLIDNTL 190 (196)
T ss_dssp TSEEEECSCSCH-------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCH-------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997999689976-------------------6999999999999999999986
No 9
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=1.00 E-value=1 Score=151.55 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH------HHCCCEEEE
Q ss_conf 25999999999999988639899999998999999999983499299994051199999999999------616975798
Q 028777 7 SSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRL------AHLGISTHL 80 (204)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l------~~lg~~~~~ 80 (204)
..+.++++.+.+++.++.+.++ + .+.+.++.+++.+.++++|+++|.|.|+.+|+++.++| .+.|+++..
T Consensus 7 ~~~~~~~~~~~~~l~~t~~~l~-~---~i~~~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~ 82 (199)
T 1x92_A 7 HRIRQLFQASIETKQQALEVLP-P---YIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVA 82 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSH-H---HHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 9999999999999999999859-9---99999999999998799899982766588899999998367665788874576
Q ss_pred EC-----------CCC---------CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHC---C
Q ss_conf 36-----------888---------999999948999829999889999999998869929998058998641110---5
Q 028777 81 VF-----------DMT---------TPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKH---A 137 (204)
Q Consensus 81 ~~-----------d~~---------~~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~---a 137 (204)
.. |.. ...++++|++|+||.||++++++++++.||++|+++|+||++++| |++++ |
T Consensus 83 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s-~La~~~~~a 161 (199)
T 1x92_A 83 LTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGG-GMASLLLPE 161 (199)
T ss_dssp TTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH-HHHHHCCTT
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-CHHHCCCCC
T ss_conf 3797067777615865789999999827999999999818989889999999999879979999779999-677643569
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9689908843569975356578998656642899999999999999999991
Q 028777 138 SVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEAL 189 (204)
Q Consensus 138 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~l~~~l~~~~ 189 (204)
|++|.++..... .+..+.++++|+|+..+..+.
T Consensus 162 d~~l~~~~~~~~-------------------~~~~~~l~i~~~L~~~~~~~~ 194 (199)
T 1x92_A 162 DVEIRVPSKITA-------------------RIQEVHLLAIHCLCDLIDRQL 194 (199)
T ss_dssp CEEEECSCSCHH-------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHH-------------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 879980999667-------------------899999999999999999985
No 10
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=1.00 E-value=1 Score=148.55 Aligned_cols=159 Identities=13% Similarity=0.195 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH------HCCCEEEE
Q ss_conf 259999999999999886398999999989999999999834992999940511999999999996------16975798
Q 028777 7 SSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA------HLGISTHL 80 (204)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~------~lg~~~~~ 80 (204)
..++.+++...+.+.++.+.+++ .+.+.++.+++.+.++++|+++|.|.|+.+|++++++|. ++|+++..
T Consensus 8 ~~~~~~~~~~~~~l~~t~~~l~~----~i~~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~ 83 (201)
T 3trj_A 8 DKINSYFESSIQAKIETANALPP----AIAQAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIA 83 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHH----HHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 99999999999999999998799----99999999999998799899996838479999999985586577788874687
Q ss_pred EC-CC---------------C----CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCC---
Q ss_conf 36-88---------------8----9999999489998299998899999999988699299980589986411105---
Q 028777 81 VF-DM---------------T----TPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHA--- 137 (204)
Q Consensus 81 ~~-d~---------------~----~~~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~a--- 137 (204)
.+ |. . ...++++|++|++|.||++++++++++.||++|+++|+||++++| |++++|
T Consensus 84 ~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s-~la~~a~~~ 162 (201)
T 3trj_A 84 LTGDVATITAVGNHYGFSQIFAKQVAALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGG-ALQNMYNTD 162 (201)
T ss_dssp TTSCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCC-GGGGTCCTT
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHCCC
T ss_conf 1587088877505788899999999962899998999969989889999999999879938999799998-799861559
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9689908843569975356578998656642899999999999999999991
Q 028777 138 SVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEAL 189 (204)
Q Consensus 138 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~l~~~l~~~~ 189 (204)
|++|.+|..... ......++++|+|+..+...+
T Consensus 163 d~~l~~~~~~~~-------------------~~~~~~l~i~~~l~~~v~~~l 195 (201)
T 3trj_A 163 DIELRVPSDNIA-------------------NIQENHFLIVHCLCDIIDQKL 195 (201)
T ss_dssp CEEEEESCCCHH-------------------HHHHHHHHHHHHHHHHHHTC-
T ss_pred CEEEEECCCCCH-------------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 889996799830-------------------889999999999999999997
Done!