Citrus Sinensis ID: 028778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENPSLLEENL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccccccccccccEEcccccccccccEEEEEEEEcccEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccccccccHHHHcccccEEEEEEEccccEEEEEEEEcccccHHcc
Coil and Loop (DISEMBL)
mdrsdaqspqVETARILAEFLEVAITSVVFLkglypsgafeRRRYMNLVVQRarhpqlrdYIHSSVSSLLLFIQKGLVERVAVIFSnannvpleRYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFcslpqvntskdaelwiptdtkqwqqpplitpiksmssdsLSVQLYlenpslleenl
Flexible Loop (DISEMBL)
mdrsdaqspqVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFsnannvplerYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYlenpslleenl
Low Complexity Region (SEG)
MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIklsvskslskvlPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENPSLLEENL
Disordered region (IsUnstruct)
*************ARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQ**L****************************
Disordered Region (DISOPRED)
*************ARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVN**********HLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTD*******P*ITPIKSMSSDSLSVQLYLENP*******
Disordered Region (DISEMBL)
***********ETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENPSLLEENL
Disordered Region (DISPRO)
******QSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTS*DAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENPS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENPSLLEENL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q568H3	211	Mitotic spindle assembly	yes	no	0.946	0.914	0.339	8e-24
Q8QFR4	211	Mitotic spindle assembly	N/A	no	0.946	0.914	0.339	1e-23
Q28H85	211	Mitotic spindle assembly	yes	no	0.946	0.914	0.339	4e-23
Q2KIP7	211	Mitotic spindle assembly	yes	no	0.936	0.905	0.317	1e-22
D3Z8D9	211	Mitotic spindle assembly	yes	no	0.936	0.905	0.312	1e-22
Q9D752	211	Mitotic spindle assembly	yes	no	0.936	0.905	0.312	1e-22
Q4KWZ6	211	Mitotic spindle assembly	yes	no	0.946	0.914	0.325	2e-22
Q9UI95	211	Mitotic spindle assembly	yes	no	0.946	0.914	0.320	4e-22
Q0E7J8	213	DNA polymerase zeta proce	yes	no	0.598	0.572	0.288	5e-09
Q9Z1B5	205	Mitotic spindle assembly	no	no	0.838	0.834	0.265	6e-08

>sp|Q568H3|MD2L2_DANRE Mitotic spindle assembly checkpoint protein MAD2B OS=Danio rerio GN=mad2l2 PE=2 SV=1

 Score =  110 bits (274), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 120/209 (57%), Gaps = 16/209 (7%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A IL EFLEVAI  +++++ +YPSG F++R+  N+ VQ + HPQL  
Sbjct: 4   LTRQDLNFGQV-VADILCEFLEVAIHLILYVRDIYPSGIFQKRQKYNVPVQMSCHPQLNQ 62

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
           YI  ++  +   I+K   E+V V+  N  + P+ER+VF+I    ++  S  +++   H+E
Sbjct: 63  YIQDTLHCVKPLIEKNEAEKVVVVIMNKEHHPVERFVFEISQPPLLAISSETLL--SHVE 120

Query: 117 FSLRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQ- 170
             LR+ ++K+SV  ++    P GC + +      A   ++ +V   KD   WI  D ++ 
Sbjct: 121 QLLRAMILKISVCDAVLDSNPPGCTFTVLVHTREAATRNMEKVQVIKDFP-WIVADEQEV 179

Query: 171 -WQQPPLITPIKSMSSDSLSVQLYLENPS 198
             ++  LI P+K+M+SD L +QLY+E  +
Sbjct: 180 HMEEAKLI-PLKTMTSDILKMQLYVEEKT 207

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit rev3l and the inserter polymerase rev1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also play a role in signal transduction in response to DNA damage. May regulate the activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Through transcriptional regulation may play a role in epithelial-mesenchymal transdifferentiation.
Danio rerio (taxid: 7955)

>sp|Q8QFR4|MD2L2_XENLA Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus laevis GN=mad2l2 PE=1 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 115/203 (56%), Gaps = 10/203 (4%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A IL EFLEVA+  +++++ +YP+G F++R+  N+ VQ + HP+L  
Sbjct: 4   LTRQDLNFGQV-VADILCEFLEVAVHLILYVREVYPTGIFQKRKKYNVPVQMSCHPELNR 62

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
           YI  ++  +   I+K  VE+V V+  +  + P+ER+VF+I      S  S     H+E  
Sbjct: 63  YIQDTLHCVKPLIEKNDVEKVVVVILDKEHHPVERFVFEIAQPPLLSISSDSLLSHVEQL 122

Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
           LR+F++K+SV  ++    P GC + +      A   ++ ++   KD   WI  D +    
Sbjct: 123 LRAFILKISVCDAVLDNNPPGCTFTLLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 181

Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
           Q P + P+K+M+SD L +QLY+E
Sbjct: 182 QEPRLIPLKTMTSDILKMQLYVE 204

Inhibits the fzr1-APC complex activity during mitosis. Plays a role in progression of mitosis.

Xenopus laevis (taxid: 8355)

>sp|Q28H85|MD2L2_XENTR Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus tropicalis GN=mad2l2 PE=2 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 10/203 (4%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A IL EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct: 4   LTRQDLNFGQV-VADILCEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNR 62

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
           YI  ++  +   I+K  VE+V V+  +  + P+ER+VF+I      S  S     H+E  
Sbjct: 63  YIQDTLHCVKPLIEKNDVEKVVVVILDKEHHPVERFVFEIAQPPLLSISSDSLLSHVEQL 122

Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
           LR+F++K+SV  ++    P GC + +      A   ++ ++   KD   WI  D +    
Sbjct: 123 LRAFILKISVCDAVLDNNPPGCTFTLLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 181

Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
           Q P + P+K+M+SD L +QLY+E
Sbjct: 182 QEPRLIPLKTMTSDILKMQLYVE 204

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit rev3l and the inserter polymerase rev1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also play a role in signal transduction in response to DNA damage. May regulate the activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Through transcriptional regulation may play a role in epithelial-mesenchymal transdifferentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q2KIP7|MD2L2_BOVIN Mitotic spindle assembly checkpoint protein MAD2B OS=Bos taurus GN=MAD2L2 PE=2 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 117/205 (57%), Gaps = 14/205 (6%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A +L EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct: 4   LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
           YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    ++  S  S++   H+E
Sbjct: 63  YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLPISSDSLL--SHVE 120

Query: 117 FSLRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQW 171
             LR+F++K+SV  ++    P GC + +      A   ++ ++   KD   WI  D +  
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query: 172 Q-QPPLITPIKSMSSDSLSVQLYLE 195
               P + P+K+M+SD L +QLY+E
Sbjct: 180 HMHDPRLIPLKTMTSDILKMQLYVE 204

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also regulate another aspect of cellular response to DNA damage through regulation of the JNK-mediated phosphorylation and activation of the transcriptional activator ELK1. Inhibits the FZR1- and probably CDC20-mediated activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Regulates TCF7L2-mediated gene transcription and may play a role in epithelial-mesenchymal transdifferentiation.

Bos taurus (taxid: 9913)

>sp|D3Z8D9|MD2L2_RAT Mitotic spindle assembly checkpoint protein MAD2B OS=Rattus norvegicus GN=Mad2l2 PE=2 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 14/205 (6%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A +L+EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct: 4   LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
           YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    +++ +  S++   H+E
Sbjct: 63  YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLL--SHVE 120

Query: 117 FSLRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQW 171
             LR+F++K+SV  ++    P GC + +      A   ++ ++   KD   WI  D +  
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query: 172 Q-QPPLITPIKSMSSDSLSVQLYLE 195
               P + P+K+M+SD L +QLY+E
Sbjct: 180 HMHDPRLIPLKTMTSDILKMQLYVE 204

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also regulate another aspect of cellular response to DNA damage through regulation of the JNK-mediated phosphorylation and activation of the transcriptional activator ELK1. Inhibits the FZR1- and probably CDC20-mediated activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Regulates TCF7L2-mediated gene transcription and may play a role in epithelial-mesenchymal transdifferentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q9D752|MD2L2_MOUSE Mitotic spindle assembly checkpoint protein MAD2B OS=Mus musculus GN=Mad2l2 PE=1 SV=2

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 14/205 (6%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A +L+EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct: 4   LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
           YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    +++ +  S++   H+E
Sbjct: 63  YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLL--SHVE 120

Query: 117 FSLRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQW 171
             LR+F++K+SV  ++    P GC + +      A   ++ ++   KD   WI  D +  
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query: 172 Q-QPPLITPIKSMSSDSLSVQLYLE 195
               P + P+K+M+SD L +QLY+E
Sbjct: 180 HMHDPRLIPLKTMTSDILKMQLYVE 204

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also regulate another aspect of cellular response to DNA damage through regulation of the JNK-mediated phosphorylation and activation of the transcriptional activator ELK1. Inhibits the FZR1- and probably CDC20-mediated activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Regulates TCF7L2-mediated gene transcription and may play a role in epithelial-mesenchymal transdifferentiation.

Mus musculus (taxid: 10090)

>sp|Q4KWZ6|MD2L2_CHICK Mitotic spindle assembly checkpoint protein MAD2B OS=Gallus gallus GN=MAD2L2 PE=1 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 114/203 (56%), Gaps = 10/203 (4%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A +L+EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct: 4   LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNQ 62

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
           YI  ++  +   ++K  VE+V V+  +  + P+ER+VF+I      S  S     H+E  
Sbjct: 63  YIQDTLHCVKPLLEKNDVEKVVVVILDKEHHPVERFVFEITQPPLLSISSESLLSHVEQL 122

Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
           LR+F++K+SV  ++    P GC + +      A   ++ ++   KD   WI  D +    
Sbjct: 123 LRAFILKISVCDAVLDNNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 181

Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
             P + P+K+M+SD L +QLY+E
Sbjct: 182 HDPRLIPLKTMTSDILKMQLYVE 204

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also play a role in signal transduction in response to DNA damage. May regulate the activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Through transcriptional regulation may play a role in epithelial-mesenchymal transdifferentiation.

Gallus gallus (taxid: 9031)

>sp|Q9UI95|MD2L2_HUMAN Mitotic spindle assembly checkpoint protein MAD2B OS=Homo sapiens GN=MAD2L2 PE=1 SV=2

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 113/203 (55%), Gaps = 10/203 (4%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A +L EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct: 4   LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
           YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I      S  S     H+E  
Sbjct: 63  YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQL 122

Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
           LR+F++K+SV  ++    P GC + +      A   ++ ++   KD   WI  D +    
Sbjct: 123 LRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 181

Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
             P + P+K+M+SD L +QLY+E
Sbjct: 182 HDPRLIPLKTMTSDILKMQLYVE 204

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also regulate another aspect of cellular response to DNA damage through regulation of the JNK-mediated phosphorylation and activation of the transcriptional activator ELK1. Inhibits the FZR1- and probably CDC20-mediated activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Regulates TCF7L2-mediated gene transcription and may play a role in epithelial-mesenchymal transdifferentiation.

Homo sapiens (taxid: 9606)

>sp|Q0E7J8|REV7_SCHPO DNA polymerase zeta processivity subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev7 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 20/142 (14%)

Query: 16  ILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQK 75
           I  EFL V+I  +++ + LYP   F + R  N +V ++RHP L +YI   V S +  +Q 
Sbjct: 15  IFGEFLLVSIHCILYARRLYPQDLFIKARKYNTIVWQSRHPILCEYIEEVVQSCIEELQT 74

Query: 76  GLVERVAVIFSNANNVPLERYVF---------------KIMVNQSYGSMVEEGHLEFSLR 120
           G V +VA+   N      ERYVF               +I  N+ +     + ++E+   
Sbjct: 75  GSVHQVALSIINKEQREEERYVFSTDSIPIIPDFLLEKQISTNEPFT----DAYVEYMRA 130

Query: 121 SFLIKLSVSKSLSKVLPQGCRW 142
           S +  L+++  L  ++ Q C W
Sbjct: 131 SLIQLLNITNGLP-LIEQECTW 151

Required for DNA damage induced mutagenesis. Involved in DNA repair, mitochondrial DNA repair and translesion synthesis. Has a role in the bypass of abasic (AP) sites.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9Z1B5|MD2L1_MOUSE Mitotic spindle assembly checkpoint protein MAD2A OS=Mus musculus GN=Mad2l1 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 21/192 (10%)

Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +     P+L  Y+++ V  L  +
Sbjct: 16  SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLTTTDPELIKYLNNVVEQLKEW 75

Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKS 131
           + K  V+++ V+ SN  +   LER+ F I  +++     EEG     +R    + ++   
Sbjct: 76  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAK---EEG-----VRREKSQKAIQDE 127

Query: 132 LSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDT-----KQWQQ--PPLITPIKSMS 184
           +  V+ Q     ITA    LP +  S   +L I TD      ++W++  P  IT  + + 
Sbjct: 128 IRSVIRQ-----ITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNCEEVR 182

Query: 185 SDSLSVQLYLEN 196
             S +  ++  N
Sbjct: 183 LRSFTTTIHKVN 194

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. Required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and inhibits the activity of the anaphase promoting complex by sequestering CDC20 until all chromosomes are aligned at the metaphase plate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
224115274	207	predicted protein [Populus trichocarpa]	0.970	0.956	0.786	8e-86
225462166	204	PREDICTED: mitotic spindle assembly chec	0.995	0.995	0.748	2e-85
255544690	205	Mitotic spindle assembly checkpoint prot	0.921	0.917	0.771	2e-81
449456132	208	PREDICTED: mitotic spindle assembly chec	0.995	0.975	0.731	8e-80
357451825	204	Mitotic spindle assembly checkpoint prot	0.985	0.985	0.716	2e-79
296082761	183	unnamed protein product [Vitis vinifera]	0.862	0.961	0.772	4e-76
297844586	212	hypothetical protein ARALYDRAFT_889051 [	0.950	0.915	0.705	1e-75
18394379	215	mitotic spindle assembly checkpoint prot	0.965	0.916	0.678	8e-75
50725674	207	putative mitotic arrest defective protei	0.975	0.961	0.631	2e-68
242079803	205	hypothetical protein SORBIDRAFT_07g02575	0.975	0.970	0.616	5e-67

>gi|224115274|ref|XP_002332204.1| predicted protein [Populus trichocarpa] gi|222875311|gb|EEF12442.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 158/201 (78%), Positives = 178/201 (88%), Gaps = 3/201 (1%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           MD  + QSP   T+RIL EFLEVAITSVVFLKG+YPS AFERRRYMN+VVQRARHPQLRD
Sbjct: 1   MDSKNNQSP---TSRILVEFLEVAITSVVFLKGVYPSDAFERRRYMNVVVQRARHPQLRD 57

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLR 120
           YIHS+VS LL FIQKGLVERVAVIF N +N+PLER++FK+ ++QSYGS VEEG LEFSLR
Sbjct: 58  YIHSAVSGLLPFIQKGLVERVAVIFFNTDNIPLERFIFKLAMDQSYGSKVEEGDLEFSLR 117

Query: 121 SFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPI 180
           SFL+KLSVS+ L+KVLP+ CRWEITAYF SLP V+TSK A+LWIPTDTKQWQQP LITPI
Sbjct: 118 SFLVKLSVSEGLTKVLPRDCRWEITAYFRSLPHVSTSKVADLWIPTDTKQWQQPSLITPI 177

Query: 181 KSMSSDSLSVQLYLENPSLLE 201
           KSMSS+ LSVQLYLE+PSL E
Sbjct: 178 KSMSSEPLSVQLYLEHPSLSE 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462166|ref|XP_002266198.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B [Vitis vinifera]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/203 (74%), Positives = 176/203 (86%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           M+R + QSPQ ETARIL EFLEVAITS+VFLKG+YPSGAFERRRYMN VVQRARHPQLRD
Sbjct: 1   MERRENQSPQNETARILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPQLRD 60

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLR 120
           YIHS+VS LL FIQKGLVERVAVIF N +N+P+ER++FK+ VNQSY S VEE  LEFSLR
Sbjct: 61  YIHSAVSGLLPFIQKGLVERVAVIFFNVDNIPIERFIFKLAVNQSYDSKVEEAALEFSLR 120

Query: 121 SFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPI 180
           SFLIKL VS++L+K LP+ CRWEITAYF SLP  + SKDAE+WIPTDTKQWQ PP+I+PI
Sbjct: 121 SFLIKLPVSETLTKALPRDCRWEITAYFHSLPDASRSKDAEVWIPTDTKQWQTPPVISPI 180

Query: 181 KSMSSDSLSVQLYLENPSLLEEN 203
           KSM+++ L +QLYLE+PS  E N
Sbjct: 181 KSMTTEPLCLQLYLEHPSSSEPN 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544690|ref|XP_002513406.1| Mitotic spindle assembly checkpoint protein MAD2B, putative [Ricinus communis] gi|223547314|gb|EEF48809.1| Mitotic spindle assembly checkpoint protein MAD2B, putative [Ricinus communis]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/188 (77%), Positives = 169/188 (89%)

Query: 12  ETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLL 71
           ETA IL EFLEVAITS+V +KG+YPSGAFERRRYMN+VVQRA+HPQLRDYIHS+VSSLL 
Sbjct: 11  ETASILVEFLEVAITSIVSIKGVYPSGAFERRRYMNVVVQRAKHPQLRDYIHSAVSSLLP 70

Query: 72  FIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKS 131
           FIQKGLVERVAVIF N +N+P+ER++FK+ VNQ+YG  VEE  LEFSLRSFL KLSVS  
Sbjct: 71  FIQKGLVERVAVIFLNNDNIPVERFIFKLAVNQAYGLNVEESGLEFSLRSFLKKLSVSAP 130

Query: 132 LSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQ 191
           L+++LP+ CRWEITAYF S+P+V TSKDAELWIPTDTKQWQQPPL+TPIKSMSS+ L +Q
Sbjct: 131 LTRILPRDCRWEITAYFSSIPEVGTSKDAELWIPTDTKQWQQPPLLTPIKSMSSEPLCLQ 190

Query: 192 LYLENPSL 199
           LYLE+P+L
Sbjct: 191 LYLEHPNL 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456132|ref|XP_004145804.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B-like [Cucumis sativus] gi|449528949|ref|XP_004171464.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD2B-like [Cucumis sativus]

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 150/205 (73%), Positives = 174/205 (84%), Gaps = 2/205 (0%)

Query: 1   MDRSDAQ-SPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLR 59
           MD  D +  PQ E  +IL +FLEVAITS+VFLKG+YPSGAFERRRYMN VVQ+ARHP+L+
Sbjct: 1   MDSRDNKVPPQGEIIQILGDFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQKARHPELQ 60

Query: 60  DYIHSSVSSLLLFIQKGLVERVAVIFSNAN-NVPLERYVFKIMVNQSYGSMVEEGHLEFS 118
           DYIHS+VS LL FIQKGLVERVAVIFSN++ NV LER+VFK+ VNQSY S VE   LEF+
Sbjct: 61  DYIHSTVSGLLPFIQKGLVERVAVIFSNSDSNVQLERFVFKLTVNQSYESKVENSDLEFA 120

Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLIT 178
           LR+FLIKLSVS+ L+KVLP  C+WEITAYF +LP  +TSKDAE WIPTDTKQWQQPP+IT
Sbjct: 121 LRAFLIKLSVSEPLTKVLPPDCKWEITAYFQTLPSSSTSKDAESWIPTDTKQWQQPPVIT 180

Query: 179 PIKSMSSDSLSVQLYLENPSLLEEN 203
           PIKSM+S  LS+QLYLE+PSL E N
Sbjct: 181 PIKSMTSRPLSLQLYLEHPSLSEPN 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451825|ref|XP_003596189.1| Mitotic spindle assembly checkpoint protein MAD2B [Medicago truncatula] gi|355485237|gb|AES66440.1| Mitotic spindle assembly checkpoint protein MAD2B [Medicago truncatula]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/201 (71%), Positives = 171/201 (85%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           M+R + Q+PQ +  R+L EFLEVAITSVVFLKG+YP GAFER RYMN+VVQRA HPQLR 
Sbjct: 1   MERRENQTPQGQIGRVLVEFLEVAITSVVFLKGIYPQGAFERARYMNVVVQRACHPQLRY 60

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLR 120
           YIH++VS LL FIQKG+VERVAVIF NA+NVPLE++VFK+ +N SYGS VEE  L+ SLR
Sbjct: 61  YIHATVSGLLPFIQKGMVERVAVIFFNADNVPLEKFVFKLAMNLSYGSAVEEVDLQLSLR 120

Query: 121 SFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPI 180
           SF+ KLS+S+SL+K LP  CRWEITAYF S+P+  TSK+A+LWIPTDTKQWQQPPLITPI
Sbjct: 121 SFMSKLSISESLTKKLPPDCRWEITAYFRSIPEAGTSKEADLWIPTDTKQWQQPPLITPI 180

Query: 181 KSMSSDSLSVQLYLENPSLLE 201
           KSMSS+ L +QLYLE+P L E
Sbjct: 181 KSMSSEPLCLQLYLEHPFLSE 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082761|emb|CBI21766.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 153/176 (86%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           M+R + QSPQ ETARIL EFLEVAITS+VFLKG+YPSGAFERRRYMN VVQRARHPQLRD
Sbjct: 1   MERRENQSPQNETARILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPQLRD 60

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLR 120
           YIHS+VS LL FIQKGLVERVAVIF N +N+P+ER++FK+ VNQSY S VEE  LEFSLR
Sbjct: 61  YIHSAVSGLLPFIQKGLVERVAVIFFNVDNIPIERFIFKLAVNQSYDSKVEEAALEFSLR 120

Query: 121 SFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPL 176
           SFLIKL VS++L+K LP+ CRWEITAYF SLP  + SKDAE+WIPTDTKQWQ PP 
Sbjct: 121 SFLIKLPVSETLTKALPRDCRWEITAYFHSLPDASRSKDAEVWIPTDTKQWQTPPF 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844586|ref|XP_002890174.1| hypothetical protein ARALYDRAFT_889051 [Arabidopsis lyrata subsp. lyrata] gi|297336016|gb|EFH66433.1| hypothetical protein ARALYDRAFT_889051 [Arabidopsis lyrata subsp. lyrata]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 166/197 (84%), Gaps = 3/197 (1%)

Query: 3   RSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYI 62
           + D QS +V  A  + EF+EVAIT +VFLKG YPS AFERRRYMN+VVQRARHP+LRDYI
Sbjct: 4   KDDNQSGEV--AGTVVEFMEVAITMIVFLKGFYPSAAFERRRYMNVVVQRARHPELRDYI 61

Query: 63  HSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSF 122
           HS+ S LL FIQKGLVERVAVIFS+ +NVP+ER++FK+ +N S  ++VEEG LEF+LRSF
Sbjct: 62  HSAASGLLPFIQKGLVERVAVIFSSKDNVPVERFIFKLTINPSSAALVEEGQLEFALRSF 121

Query: 123 LIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPIKS 182
           LIKLSVSKSL K LPQ CRWE+TAY  SLPQV +SK  ELWIPTDTKQWQ PP+ITP+KS
Sbjct: 122 LIKLSVSKSLVKPLPQNCRWEVTAYLRSLPQVGSSK-GELWIPTDTKQWQNPPVITPVKS 180

Query: 183 MSSDSLSVQLYLENPSL 199
           ++S+ L +QLYLE+PSL
Sbjct: 181 LNSEPLCLQLYLEHPSL 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394379|ref|NP_564002.1| mitotic spindle assembly checkpoint protein MAD2B [Arabidopsis thaliana] gi|14583010|gb|AAK69719.1|AF372829_1 putative translesion synthesis polymerase zeta subunit [Arabidopsis thaliana] gi|51968612|dbj|BAD42998.1| putative translesion synthesis polymerase zeta subunit (REV7) [Arabidopsis thaliana] gi|88193820|gb|ABD42999.1| At1g16590 [Arabidopsis thaliana] gi|332191353|gb|AEE29474.1| mitotic spindle assembly checkpoint protein MAD2B [Arabidopsis thaliana]

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/199 (67%), Positives = 166/199 (83%), Gaps = 2/199 (1%)

Query: 3   RSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYI 62
           + D QS +V   R L +F+EVAIT +V+LKG YPS AFERRRYMN+VVQRARHP+LRDYI
Sbjct: 4   KDDNQSGEV--GRTLVDFMEVAITMIVYLKGFYPSAAFERRRYMNVVVQRARHPELRDYI 61

Query: 63  HSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSF 122
           HS+ S LL FI+KGLVERVAV+F + +NVP+ER++FKI +  S  ++VEEG LEF+LRSF
Sbjct: 62  HSAASGLLPFIEKGLVERVAVVFFSEDNVPVERFIFKITIKPSCAALVEEGQLEFALRSF 121

Query: 123 LIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPIKS 182
           LIKLSVSKSL K LP  CRWE+TAY  SLPQV +SK+AELWIPTDTKQWQ PP++TP+KS
Sbjct: 122 LIKLSVSKSLVKPLPLNCRWEVTAYLRSLPQVGSSKEAELWIPTDTKQWQNPPVLTPVKS 181

Query: 183 MSSDSLSVQLYLENPSLLE 201
           ++S+ L +QLYLE+PSL E
Sbjct: 182 LNSEPLCLQLYLEHPSLSE 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50725674|dbj|BAD33140.1| putative mitotic arrest defective protein 2B [Oryza sativa Japonica Group] gi|222619003|gb|EEE55135.1| hypothetical protein OsJ_02922 [Oryza sativa Japonica Group]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/201 (63%), Positives = 158/201 (78%), Gaps = 2/201 (0%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           MDR + Q+PQ + A+++ +FLEVA++ VVFLKG YP  AFERRRYMN+VVQ+A HPQL  
Sbjct: 1   MDRKN-QTPQGQIAQVIVDFLEVAVSCVVFLKGFYPPRAFERRRYMNVVVQKAVHPQLAG 59

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLR 120
           YIHS+ S LL FIQKGLVERV VIF +  +VP+E++VFK+ VNQSYGS +EE  LEF+LR
Sbjct: 60  YIHSATSGLLPFIQKGLVERVVVIFYDKAHVPVEKFVFKLAVNQSYGSKIEEASLEFALR 119

Query: 121 SFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPI 180
           +FLIKL+V++ L++ LP    WEI AYF SLP  +  K+A+LWIPTDTKQW QPP ITPI
Sbjct: 120 AFLIKLAVAEPLTRTLPSDGSWEIAAYFRSLPP-DGEKEAQLWIPTDTKQWMQPPQITPI 178

Query: 181 KSMSSDSLSVQLYLENPSLLE 201
           KSMS D + +QLYLE PS  E
Sbjct: 179 KSMSCDPVKMQLYLEQPSRTE 199

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242079803|ref|XP_002444670.1| hypothetical protein SORBIDRAFT_07g025750 [Sorghum bicolor] gi|241941020|gb|EES14165.1| hypothetical protein SORBIDRAFT_07g025750 [Sorghum bicolor]

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/201 (61%), Positives = 159/201 (79%), Gaps = 2/201 (0%)

Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           MDR + Q+PQ + AR++ EFLEVA++ ++FLKG YP  AFERRRYMN+VVQ+ARHP+L  
Sbjct: 1   MDRKN-QTPQGQIARVVVEFLEVAVSCIIFLKGFYPPRAFERRRYMNVVVQKARHPELAS 59

Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLR 120
           YIHS    LL FIQKGLVERV VIF +  +VP+E++VFK+ VNQSY S +EE +LEF+LR
Sbjct: 60  YIHSVTVGLLPFIQKGLVERVVVIFYDKEHVPIEKFVFKLAVNQSYCSKLEEANLEFALR 119

Query: 121 SFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPI 180
           +FLIKL+V++ ++K LP    WEITAYF SLP  +  ++A+LWIPTDTK W QPP ITPI
Sbjct: 120 AFLIKLTVAEPVTKPLPSDGNWEITAYFRSLPG-DDDREAQLWIPTDTKLWMQPPQITPI 178

Query: 181 KSMSSDSLSVQLYLENPSLLE 201
           KS+S D L +QLYLE+PS+ E
Sbjct: 179 KSVSCDPLKMQLYLEHPSITE 199

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2017958	215	REV7 "AT1G16590" [Arabidopsis	0.980	0.930	0.621	5.2e-65
UNIPROTKB|Q8QFR4	211	mad2l2 "Mitotic spindle assemb	0.936	0.905	0.317	1e-22
ZFIN|ZDB-GENE-081105-11	211	si:dkey-23c22.2 "si:dkey-23c22	0.941	0.909	0.328	1.3e-22
UNIPROTKB|Q28H85	211	mad2l2 "Mitotic spindle assemb	0.936	0.905	0.317	2.1e-22
UNIPROTKB|Q4KWZ6	211	MAD2L2 "Mitotic spindle assemb	0.936	0.905	0.302	7e-22
UNIPROTKB|F1MSW4	211	MAD2L2 "Mitotic spindle assemb	0.936	0.905	0.297	1.5e-21
UNIPROTKB|Q9UI95	211	MAD2L2 "Mitotic spindle assemb	0.936	0.905	0.297	1.5e-21
MGI|MGI:1919140	211	Mad2l2 "MAD2 mitotic arrest de	0.936	0.905	0.292	2.4e-21
RGD|1307499	211	Mad2l2 "MAD2 mitotic arrest de	0.936	0.905	0.292	2.4e-21
UNIPROTKB|Q2KIP7	211	MAD2L2 "Mitotic spindle assemb	0.936	0.905	0.297	3e-21

TAIR|locus:2017958 REV7 "AT1G16590" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 125/201 (62%), Positives = 155/201 (77%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             M R D  +   E  R L +F+EVAIT +V+LKG YPS AFERRRYMN+VVQRARHP+LRD
Sbjct:     1 MSRKD-DNQSGEVGRTLVDFMEVAITMIVYLKGFYPSAAFERRRYMNVVVQRARHPELRD 59

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLR 120
             YIHS+ S LL FI+KGLVERVAV+F + +NVP+ER++FKI +  S  ++VEEG LEF+LR
Sbjct:    60 YIHSAASGLLPFIEKGLVERVAVVFFSEDNVPVERFIFKITIKPSCAALVEEGQLEFALR 119

Query:   121 SFLIXXXXXXXXXXXXPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQPPLITPI 180
             SFLI            P  CRWE+TAY  SLPQV +SK+AELWIPTDTKQWQ PP++TP+
Sbjct:   120 SFLIKLSVSKSLVKPLPLNCRWEVTAYLRSLPQVGSSKEAELWIPTDTKQWQNPPVLTPV 179

Query:   181 KSMSSDSLSVQLYLENPSLLE 201
             KS++S+ L +QLYLE+PSL E
Sbjct:   180 KSLNSEPLCLQLYLEHPSLSE 200

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0007094 "mitotic spindle assembly checkpoint" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0010224 "response to UV-B" evidence=IMP

UNIPROTKB|Q8QFR4 mad2l2 "Mitotic spindle assembly checkpoint protein MAD2B" [Xenopus laevis (taxid:8355)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 65/205 (31%), Positives = 114/205 (55%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A IL EFLEVA+  +++++ +YP+G F++R+  N+ VQ + HP+L  
Sbjct:     4 LTRQDLNFGQV-VADILCEFLEVAVHLILYVREVYPTGIFQKRKKYNVPVQMSCHPELNR 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
             YI  ++  +   I+K  VE+V V+  +  + P+ER+VF+I    +++ S  S++   H+E
Sbjct:    63 YIQDTLHCVKPLIEKNDVEKVVVVILDKEHHPVERFVFEIAQPPLLSISSDSLLS--HVE 120

Query:   117 FSLRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ- 170
               LR+F++            P GC + +  +       ++ ++   KD   WI  D +  
Sbjct:   121 QLLRAFILKISVCDAVLDNNPPGCTFTLLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query:   171 WQQPPLITPIKSMSSDSLSVQLYLE 195
               Q P + P+K+M+SD L +QLY+E
Sbjct:   180 HMQEPRLIPLKTMTSDILKMQLYVE 204

GO:0005634 "nucleus" evidence=IDA

GO:0005819 "spindle" evidence=ISS

GO:0009794 "regulation of mitotic cell cycle, embryonic" evidence=IMP

GO:0016035 "zeta DNA polymerase complex" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=IDA

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=ISS

GO:0042177 "negative regulation of protein catabolic process" evidence=IDA

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=ISS

GO:0042802 "identical protein binding" evidence=IDA

GO:0043393 "regulation of protein binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=IDA

ZFIN|ZDB-GENE-081105-11 si:dkey-23c22.2 "si:dkey-23c22.2" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 67/204 (32%), Positives = 108/204 (52%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A IL EFLEVAI  +++++ +YPSG F++R+  N+ VQ + HPQL  
Sbjct:     4 LTRQDLNFGQV-VADILCEFLEVAIHLILYVRDIYPSGIFQKRQKYNVPVQMSCHPQLNQ 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEE--GHLEFS 118
             YI  ++  +   I+K   E+V V+  N  + P+ER+VF+I          E    H+E  
Sbjct:    63 YIQDTLHCVKPLIEKNEAEKVVVVIMNKEHHPVERFVFEISQPPLLAISSETLLSHVEQL 122

Query:   119 LRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ--W 171
             LR+ ++            P GC + +  +       ++ +V   KD   WI  D ++   
Sbjct:   123 LRAMILKISVCDAVLDSNPPGCTFTVLVHTREAATRNMEKVQVIKDFP-WIVADEQEVHM 181

Query:   172 QQPPLITPIKSMSSDSLSVQLYLE 195
             ++  LI P+K+M+SD L +QLY+E
Sbjct:   182 EEAKLI-PLKTMTSDILKMQLYVE 204

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0016035 "zeta DNA polymerase complex" evidence=ISS

GO:0042177 "negative regulation of protein catabolic process" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=ISS

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

UNIPROTKB|Q28H85 mad2l2 "Mitotic spindle assembly checkpoint protein MAD2B" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 65/205 (31%), Positives = 113/205 (55%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A IL EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct:     4 LTRQDLNFGQV-VADILCEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNR 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
             YI  ++  +   I+K  VE+V V+  +  + P+ER+VF+I    +++ S  S++   H+E
Sbjct:    63 YIQDTLHCVKPLIEKNDVEKVVVVILDKEHHPVERFVFEIAQPPLLSISSDSLLS--HVE 120

Query:   117 FSLRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ- 170
               LR+F++            P GC + +  +       ++ ++   KD   WI  D +  
Sbjct:   121 QLLRAFILKISVCDAVLDNNPPGCTFTLLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query:   171 WQQPPLITPIKSMSSDSLSVQLYLE 195
               Q P + P+K+M+SD L +QLY+E
Sbjct:   180 HMQEPRLIPLKTMTSDILKMQLYVE 204

GO:0001558 "regulation of cell growth" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0016035 "zeta DNA polymerase complex" evidence=ISS

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=ISS

GO:0042177 "negative regulation of protein catabolic process" evidence=ISS

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

UNIPROTKB|Q4KWZ6 MAD2L2 "Mitotic spindle assembly checkpoint protein MAD2B" [Gallus gallus (taxid:9031)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 62/205 (30%), Positives = 113/205 (55%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A +L+EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct:     4 LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNQ 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
             YI  ++  +   ++K  VE+V V+  +  + P+ER+VF+I    +++ S  S++   H+E
Sbjct:    63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHHPVERFVFEITQPPLLSISSESLLS--HVE 120

Query:   117 FSLRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ- 170
               LR+F++            P GC + +  +       ++ ++   KD   WI  D +  
Sbjct:   121 QLLRAFILKISVCDAVLDNNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query:   171 WQQPPLITPIKSMSSDSLSVQLYLE 195
                 P + P+K+M+SD L +QLY+E
Sbjct:   180 HMHDPRLIPLKTMTSDILKMQLYVE 204

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=IMP;TAS

GO:0019985 "translesion synthesis" evidence=TAS

GO:0009411 "response to UV" evidence=ISS

GO:0042276 "error-prone translesion synthesis" evidence=ISS

GO:0017125 "deoxycytidyl transferase activity" evidence=ISS

GO:0001558 "regulation of cell growth" evidence=IMP

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=ISS

GO:0042177 "negative regulation of protein catabolic process" evidence=ISS

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0016035 "zeta DNA polymerase complex" evidence=ISS

UNIPROTKB|F1MSW4 MAD2L2 "Mitotic spindle assembly checkpoint protein MAD2B" [Bos taurus (taxid:9913)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 61/205 (29%), Positives = 112/205 (54%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A +L EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct:     4 LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
             YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    +++ S  S++   H+E
Sbjct:    63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLS--HVE 120

Query:   117 FSLRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ- 170
               LR+F++            P GC + +  +       ++ ++   KD   WI  D +  
Sbjct:   121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query:   171 WQQPPLITPIKSMSSDSLSVQLYLE 195
                 P + P+K+M+SD L +QLY+E
Sbjct:   180 HMHDPRLIPLKTMTSDILKMQLYVE 204

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=IEA

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=IEA

GO:0016035 "zeta DNA polymerase complex" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0006302 "double-strand break repair" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0001558 "regulation of cell growth" evidence=IEA

UNIPROTKB|Q9UI95 MAD2L2 "Mitotic spindle assembly checkpoint protein MAD2B" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 61/205 (29%), Positives = 112/205 (54%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A +L EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct:     4 LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
             YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    +++ S  S++   H+E
Sbjct:    63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLS--HVE 120

Query:   117 FSLRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ- 170
               LR+F++            P GC + +  +       ++ ++   KD   WI  D +  
Sbjct:   121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query:   171 WQQPPLITPIKSMSSDSLSVQLYLE 195
                 P + P+K+M+SD L +QLY+E
Sbjct:   180 HMHDPRLIPLKTMTSDILKMQLYVE 204

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005819 "spindle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016035 "zeta DNA polymerase complex" evidence=IDA

GO:0001558 "regulation of cell growth" evidence=IGI

GO:0006302 "double-strand break repair" evidence=IGI

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0008432 "JUN kinase binding" evidence=IDA

GO:0042177 "negative regulation of protein catabolic process" evidence=IDA

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=IDA

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010719 "negative regulation of epithelial to mesenchymal transition" evidence=IMP

GO:2000048 "negative regulation of cell-cell adhesion mediated by cadherin" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=IMP

GO:0010944 "negative regulation of transcription by competitive promoter binding" evidence=IMP

MGI|MGI:1919140 Mad2l2 "MAD2 mitotic arrest deficient-like 2" [Mus musculus (taxid:10090)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 60/205 (29%), Positives = 113/205 (55%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A +L+EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct:     4 LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
             YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    +++ +  S++   H+E
Sbjct:    63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLLS--HVE 120

Query:   117 FSLRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ- 170
               LR+F++            P GC + +  +       ++ ++   KD   WI  D +  
Sbjct:   121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query:   171 WQQPPLITPIKSMSSDSLSVQLYLE 195
                 P + P+K+M+SD L +QLY+E
Sbjct:   180 HMHDPRLIPLKTMTSDILKMQLYVE 204

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISO

GO:0001558 "regulation of cell growth" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005819 "spindle" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006302 "double-strand break repair" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007015 "actin filament organization" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=ISO

GO:0010719 "negative regulation of epithelial to mesenchymal transition" evidence=ISO

GO:0010944 "negative regulation of transcription by competitive promoter binding" evidence=ISO

GO:0016035 "zeta DNA polymerase complex" evidence=ISO

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=ISO

GO:0042177 "negative regulation of protein catabolic process" evidence=ISO

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=ISO

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

GO:2000048 "negative regulation of cell-cell adhesion mediated by cadherin" evidence=ISO

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=ISO

RGD|1307499 Mad2l2 "MAD2 mitotic arrest deficient-like 2 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 60/205 (29%), Positives = 113/205 (55%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A +L+EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct:     4 LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
             YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    +++ +  S++   H+E
Sbjct:    63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLLS--HVE 120

Query:   117 FSLRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ- 170
               LR+F++            P GC + +  +       ++ ++   KD   WI  D +  
Sbjct:   121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query:   171 WQQPPLITPIKSMSSDSLSVQLYLE 195
                 P + P+K+M+SD L +QLY+E
Sbjct:   180 HMHDPRLIPLKTMTSDILKMQLYVE 204

GO:0001558 "regulation of cell growth" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005819 "spindle" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=ISS

GO:0016035 "zeta DNA polymerase complex" evidence=ISS

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=ISS

GO:0042177 "negative regulation of protein catabolic process" evidence=ISS

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0051301 "cell division" evidence=IEA

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=ISS

UNIPROTKB|Q2KIP7 MAD2L2 "Mitotic spindle assembly checkpoint protein MAD2B" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 61/205 (29%), Positives = 111/205 (54%)

Query:     1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
             + R D    QV  A +L EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct:     4 LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62

Query:    61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
             YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    ++  S  S++   H+E
Sbjct:    63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLPISSDSLLS--HVE 120

Query:   117 FSLRSFLIXXXXXXXXXXXXPQGCRWEITAYFC-----SLPQVNTSKDAELWIPTDTKQ- 170
               LR+F++            P GC + +  +       ++ ++   KD   WI  D +  
Sbjct:   121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179

Query:   171 WQQPPLITPIKSMSSDSLSVQLYLE 195
                 P + P+K+M+SD L +QLY+E
Sbjct:   180 HMHDPRLIPLKTMTSDILKMQLYVE 204

GO:0008432 "JUN kinase binding" evidence=ISS

GO:0016035 "zeta DNA polymerase complex" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0042772 "DNA damage response, signal transduction resulting in transcription" evidence=ISS

GO:0042177 "negative regulation of protein catabolic process" evidence=ISS

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=ISS

GO:0006302 "double-strand break repair" evidence=ISS

GO:0001558 "regulation of cell growth" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4KWZ6	MD2L2_CHICK	No assigned EC number	0.3251	0.9460	0.9146	yes	no
Q568H3	MD2L2_DANRE	No assigned EC number	0.3397	0.9460	0.9146	yes	no
Q28H85	MD2L2_XENTR	No assigned EC number	0.3399	0.9460	0.9146	yes	no
Q9D752	MD2L2_MOUSE	No assigned EC number	0.3121	0.9362	0.9052	yes	no
Q9UI95	MD2L2_HUMAN	No assigned EC number	0.3201	0.9460	0.9146	yes	no
D3Z8D9	MD2L2_RAT	No assigned EC number	0.3121	0.9362	0.9052	yes	no
Q2KIP7	MD2L2_BOVIN	No assigned EC number	0.3170	0.9362	0.9052	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam02301	186	pfam02301, HORMA, HORMA domain	4e-29

>gnl|CDD|216966 pfam02301, HORMA, HORMA domain

 Score =  106 bits (266), Expect = 4e-29
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 24/187 (12%)

Query: 14  ARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFI 73
             ++ EFLEVAI S+++L+G+YP  +FE R+  NL V  +  PQL DY+   V      +
Sbjct: 6   LELVKEFLEVAINSILYLRGIYPEESFEDRKKYNLPVLVSEDPQLIDYLEKGVFD---AL 62

Query: 74  QKGLVERVA-VIFS---NANNVPLERYVFKIMVNQSYG----SMVEEGHLEFSLRSFLIK 125
           +KG ++++  VI+       N  LERY F      S G    S   E      +R+ + +
Sbjct: 63  EKGYLKKLVLVIYDDKDPEKNEVLERYQFDFSYFPSGGNSSDSEKTEDETRQEIRALIRQ 122

Query: 126 LSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAEL----WIPTDTK---QWQQPPLIT 178
           L         LP+                 T  D E     W  +D+         P   
Sbjct: 123 LIALVQFLPPLPEERTLTFKLL------YYTPPDYEPPGFKWADSDSDVKLIENSEPEEV 176

Query: 179 PIKSMSS 185
            + S S+
Sbjct: 177 SLGSFST 183

The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins. MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG3285	203	consensus Spindle assembly checkpoint protein [Cel	100.0
KOG3186	202	consensus Mitotic spindle checkpoint protein [Cell	100.0
PF02301	208	HORMA: HORMA domain; InterPro: IPR003511 The HORMA	100.0
KOG4652	324	consensus HORMA domain [Chromatin structure and dy	99.49
PF07855	163	DUF1649: Protein of unknown function (DUF1649); In	98.44
PF10033	233	ATG13: Autophagy-related protein 13; InterPro: IPR	94.35
KOG4493	219	consensus Uncharacterized conserved protein [Funct	90.13
PF06581	264	p31comet: Mad1 and Cdc20-bound-Mad2 binding; Inter	85.09

>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=100.00  E-value=6.2e-51  Score=325.97  Aligned_cols=185  Identities=19%  Similarity=0.396  Sum_probs=171.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhhccCCCCCcccceeeeccceeeeccChhHHHHHHHHHHHHHHHHHcCCccEEEEEEE
Q 028778            7 QSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFS   86 (204)
Q Consensus         7 ~~~~~~s~~~v~efLevaih~ILY~R~vYP~~~F~~~r~ynl~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l~kl~lvI~   86 (204)
                      .+|+.+|+.+|.|||+++||+|||+|||||+|+|.++|+||++++++.+++|+.||++++.|+.+||.+|+++|+++||.
T Consensus         9 ~isLkGSa~iV~EFf~y~iNSILyQRgiYPaEdF~~vkKYgLtllvs~D~elk~f~~~ilsQ~~~WL~~~kiqklvlvI~   88 (203)
T KOG3285|consen    9 CISLKGSAQIVSEFFEYGINSILYQRGIYPAEDFVRVKKYGLTLLVSHDEELKTFIRNILSQVHEWLSKGKIQKLVLVIT   88 (203)
T ss_pred             eeEeechHHHHHHHHHhhhhHHHHhccCCcHHHhhHHHhcCceEEEecCHHHHHHHHHHHHHHHHHHHhCCcceEEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CceeeEEEEeeeeccCCC------CCCChhHHHHHHHHHHHHHHhhcccCCCCCCCeeEEEEEEEeeCCCCCCCCC
Q 028778           87 NAN-NVPLERYVFKIMVNQSYG------SMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKD  159 (204)
Q Consensus        87 ~~~-~~~lEr~~Fdi~~~~~~~------~~~~~~~ie~~~ra~L~~l~~~~~~Lp~l~~~~tF~i~v~~~~~~~~~~~~~  159 (204)
                      ++. |+++|||+||++.....+      ...++..++.+||++||||+++++|||.|.+.|+|++++||+.     +.+.
T Consensus        89 ~~~tgEvlErWqFnie~~~~~~d~~na~~~k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdk-----D~~v  163 (203)
T KOG3285|consen   89 SKHTGEVLERWQFNIETENTASDGQNATRVKDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDK-----DTEV  163 (203)
T ss_pred             ecccccchhheeeeeeeeccccCcccccchhHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCC-----CccC
Confidence            998 899999999999875432      2346778999999999999999999999999999999999953     3457


Q ss_pred             CCCceecCccCcCCCCceeeeeEeecCceEEEEEEeec
Q 028778          160 AELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENP  197 (204)
Q Consensus       160 ~~~Wi~~d~~~~~~~~~~~pl~sv~~~~l~~~~~vE~~  197 (204)
                      |..|+.++++. .++++.+.+||++++.+++++-+-+.
T Consensus       164 P~~W~eS~~~~-I~n~e~VqlrsFsT~~HKVdt~V~YK  200 (203)
T KOG3285|consen  164 PEKWDESGPKL-IQNPEAVQLRSFSTSIHKVDTQVSYK  200 (203)
T ss_pred             CcchhcCCCeE-ecChhhEEEeeccccceeecceEEec
Confidence            89999999987 57889999999999999999988664

>KOG3186 consensus Mitotic spindle checkpoint protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.8e-49  Score=313.71  Aligned_cols=189  Identities=23%  Similarity=0.344  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccceeeeccceeeeccChhHHHHHHHHHHHHHHHHHcCCccEEEEEEECCCCc
Q 028778           12 ETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFSNANNV   91 (204)
Q Consensus        12 ~s~~~v~efLevaih~ILY~R~vYP~~~F~~~r~ynl~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l~kl~lvI~~~~~~   91 (204)
                      ..+++++||++|++|+|||.|++||.++|.++|+||.||++||||.||+||.+++++++++|++|.|++++|+|++|+++
T Consensus         5 ~~ad~~~e~meV~Vh~ILYvR~~YP~~iF~k~rkYN~pv~~S~hP~Ln~Yi~~vl~s~~elL~~~~v~~v~l~i~~KE~r   84 (202)
T KOG3186|consen    5 ENADGWSEKMEVSVHCILYVRRLYPQDIFIKARKYNTPVWQSRHPILNEYIEEVLQSCIELLQTGSVHQVALSIINKEQR   84 (202)
T ss_pred             ecchHHHHHHHHHHHhheeecccccHHHHHHHHhcCCceeeecCchHHHHHHHHHHHHHHHHhcCCeeEEEEEEEccccC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEEeeeeccCCCCCC--ChhHHHHHHHHHHHHHHhhcccCCCCCCC-eeEEEEEEEeeCCCCCCCC----CCCCce
Q 028778           92 PLERYVFKIMVNQSYGSMV--EEGHLEFSLRSFLIKLSVSKSLSKVLPQG-CRWEITAYFCSLPQVNTSK----DAELWI  164 (204)
Q Consensus        92 ~lEr~~Fdi~~~~~~~~~~--~~~~ie~~~ra~L~~l~~~~~~Lp~l~~~-~tF~i~v~~~~~~~~~~~~----~~~~Wi  164 (204)
                      ++|||+|.++..+...+..  -..+.++-+||+|.||+.+...||.+|.+ |||+++++|++.+..+.++    .||||+
T Consensus        85 ~~E~yvf~~~s~p~~~~~~d~~l~~~eq~mRa~i~kis~~~n~lp~~p~G~Ctftv~vht~~~a~r~~~~~~~~~~FPw~  164 (202)
T KOG3186|consen   85 EEERYVFSTDSIPIIPDFLDEFLDAYEQYMRASIIKISNITNGLPLIPQGICTFTVRVHTKDGAPRPKQWEEWFLPFPWA  164 (202)
T ss_pred             hhhheEeeccCCCcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeEEEEEEEeccccccCcchHHhhcCCchh
Confidence            9999999998877654322  35689999999999999999999999988 9999999999998887653    589999


Q ss_pred             ecCcc-CcCCCCceeeeeEeecCceEEEEEEeecCCc
Q 028778          165 PTDTK-QWQQPPLITPIKSMSSDSLSVQLYLENPSLL  200 (204)
Q Consensus       165 ~~d~~-~~~~~~~~~pl~sv~~~~l~~~~~vE~~~~~  200 (204)
                      .++.. .+...+.++|+|.||.|+|+|++|+|+..-|
T Consensus       165 ~~~~~~~q~~gv~liPl~~vd~~~lkm~i~ve~~~~~  201 (202)
T KOG3186|consen  165 RETDATRQFKGVILIPLRNVDIGPLKMEIWVEKYTNS  201 (202)
T ss_pred             hcchhhhhccCcEEEeeeecccCceEEEEEEEeeccC
Confidence            99864 3556679999999999999999999997654

>PF02301 HORMA: HORMA domain; InterPro: IPR003511 The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins

Probab=100.00  E-value=1.8e-33  Score=233.62  Aligned_cols=176  Identities=27%  Similarity=0.420  Sum_probs=138.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhhccCCCCCcccceeeecccee------eeccChhHHHHHHHHHHHHHHHHHcCCccEEE
Q 028778            9 PQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVV------QRARHPQLRDYIHSSVSSLLLFIQKGLVERVA   82 (204)
Q Consensus         9 ~~~~s~~~v~efLevaih~ILY~R~vYP~~~F~~~r~ynl~v------~~sr~p~l~~YI~~~l~~v~~~L~~g~l~kl~   82 (204)
                      |.++|+.++++||++|||+|||+|||||++.|++++.||+.+      +.+|||.|++||++   ++.++|.+|.|++|+
T Consensus         1 t~~qS~~~v~~~L~~~is~Ily~R~lyP~~~F~~~~~~~~~~k~l~~~~~~~~~~l~~~i~~---~v~dai~k~~L~~v~   77 (208)
T PF02301_consen    1 TEQQSLELVKEFLEVAISQILYLRGLYPEDCFEDRRFYGLKLKVLVPNYSSRAPQLIDYIEK---GVFDAIEKGYLKKVV   77 (208)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHTTSS-GGGEEEEEETTEEE-----TEEE--HHHHHHHHH---HHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccCCHHHCcEEEecCccccccccccCCCcHHHHHHHHh---hHHHHHhhCcceEEE
Confidence            578999999999999999999999999999999999999888      79999999999988   899999999999999


Q ss_pred             EEEECC----CCceeeEEEEeeeeccCCC------------------CCCChhHHHHHHHHHHHHHHhhcccCCCCCCCe
Q 028778           83 VIFSNA----NNVPLERYVFKIMVNQSYG------------------SMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGC  140 (204)
Q Consensus        83 lvI~~~----~~~~lEr~~Fdi~~~~~~~------------------~~~~~~~ie~~~ra~L~~l~~~~~~Lp~l~~~~  140 (204)
                      |+|++.    +++++|||+|+|++.+..+                  +..++.+++.++|++|++|..+.+.||+||++|
T Consensus        78 l~I~~~d~~~~~~~lE~y~F~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~L~~LP~~~  157 (208)
T PF02301_consen   78 LVIYDDDPPKSNEVLERYTFSFSYFPDGGPMSPEGSSISISNNTSEIDPITLDEVQEQLRALLRKLISSTQSLPPLPDER  157 (208)
T ss_dssp             EEEE----ETTTCEEEEEEEEEEE-TTGGGTSSC----------HHHCSSCHHHHHHHHHHHHHHHHHHHCTSSS--TTS
T ss_pred             EEEEecccCCCCceeEEEEEEEEecCCCCcccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHhccCCCccCCc
Confidence            999964    4789999999999964321                  135789999999999999999999999999998


Q ss_pred             eEEEEEEEeeCCCCCCCC-CCCCceecCcc---CcCCCCceeeeeEeecCce
Q 028778          141 RWEITAYFCSLPQVNTSK-DAELWIPTDTK---QWQQPPLITPIKSMSSDSL  188 (204)
Q Consensus       141 tF~i~v~~~~~~~~~~~~-~~~~Wi~~d~~---~~~~~~~~~pl~sv~~~~l  188 (204)
                      ++++.+++.++. .+..+ ..+.|......   .+...+..+++++|+||.|
T Consensus       158 ~~~~~l~~~~~t-p~dy~pp~f~~~~~~~~~~~~~~~~~~~~~vg~v~t~~H  208 (208)
T PF02301_consen  158 TLTFKLLYYDDT-PEDYEPPGFEAAEEATSFPLIFDEEPERVSVGSVSTGHH  208 (208)
T ss_dssp             SEEEEEEEEES--ETTSCSST-TEEES--STEEESSCSEEEEEEEEEEESSE
T ss_pred             eEEEEEEEEeCC-CccccCCCCCCcccccccccccccceEEEEEeeeeCCCC
Confidence            777777666542 12222 12345554211   2456679999999999975

Hop1 is a meiosis-specific protein, Rev7 is required for DNA damage induced mutagenesis, and MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity [, ].; GO: 0007067 mitosis; PDB: 3ABD_B 3ABE_C 4AEZ_H 2V64_A 2VFX_A 1GO4_D 2QYF_C 3GMH_B 1KLQ_A 1S2H_A ....

>KOG4652 consensus HORMA domain [Chromatin structure and dynamics]

Probab=99.49  E-value=3.8e-13  Score=117.16  Aligned_cols=182  Identities=16%  Similarity=0.253  Sum_probs=138.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhhccCCCCCcccceeeecc--cee-eeccChhHHH-HHHHHHHHHHHHHHcCCccEEEEE
Q 028778            9 PQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMN--LVV-QRARHPQLRD-YIHSSVSSLLLFIQKGLVERVAVI   84 (204)
Q Consensus         9 ~~~~s~~~v~efLevaih~ILY~R~vYP~~~F~~~r~yn--l~v-~~sr~p~l~~-YI~~~l~~v~~~L~~g~l~kl~lv   84 (204)
                      ...+|..++++.|.+||..|||.|||+|++.|..+.-.+  +.+ ...+.|.=.. -|...+..+.+.+..|.+++++++
T Consensus         8 ~e~~Sl~f~~rll~~ais~Ilr~Rgi~pe~yf~~~~v~~~~l~~~~~~~~~a~~~~li~~l~kg~~dai~~k~Lk~lslv   87 (324)
T KOG4652|consen    8 NEKQSLEFMTRLLYVAISTILRERGIFPEEYFKDRYVDGNLLVMTLLRRQDAPEGRLVSWLEKGVHDAIRQKLLKKLSLV   87 (324)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhcccchHHhcccccccchhhhhhhhccCCccccchHHHHHHHHHHHHHHHHHhheEEE
Confidence            467899999999999999999999999999999999877  444 3333333221 255666777888999999999999


Q ss_pred             EECCC-CceeeEEEEeeeeccCCC-------------C------CCChhHHHHHHHHHHHHHHhhcccCCCCCCCeeEEE
Q 028778           85 FSNAN-NVPLERYVFKIMVNQSYG-------------S------MVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEI  144 (204)
Q Consensus        85 I~~~~-~~~lEr~~Fdi~~~~~~~-------------~------~~~~~~ie~~~ra~L~~l~~~~~~Lp~l~~~~tF~i  144 (204)
                      |.+++ .+.+|-|+|.|.|+..++             +      ....++..+++..+++++.-+...|.|||+.|.-.+
T Consensus        88 i~~~~d~~~IE~yifsF~Y~e~g~v~~~in~~~n~~s~~~~e~s~l~~ddtrr~~~~lir~~~i~~q~LePLP~~~~~~~  167 (324)
T KOG4652|consen   88 ITESEDPEDIEVYIFSFVYDEEGSVSARINYGINGQSSKAFELSQLSMDDTRRQFAKLIRKLHICTQLLEPLPQGLILSM  167 (324)
T ss_pred             EecCCCCcceeEEEEEEEecCCCceeEEEecCCCCCcCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCccchhhhhh
Confidence            99988 678899999999986531             1      123446899999999999999999999999988888


Q ss_pred             EEEEeeCCCCCCCCCCCCceecCcc--CcCCCCceeeeeEeecCceEEEE
Q 028778          145 TAYFCSLPQVNTSKDAELWIPTDTK--QWQQPPLITPIKSMSSDSLSVQL  192 (204)
Q Consensus       145 ~v~~~~~~~~~~~~~~~~Wi~~d~~--~~~~~~~~~pl~sv~~~~l~~~~  192 (204)
                      .+|..+.+. +.. +|.-.-.+++.  .+...+.-.-|+.++++.+++.+
T Consensus       168 rl~Y~e~~p-pDy-qP~gFkd~~~~~y~~p~~p~~~~IG~v~~~hH~~~~  215 (324)
T KOG4652|consen  168 RLYYTERVP-PDY-QPEGFKDSTRAFYTLPVNPEQINIGAVSTPHHKGFV  215 (324)
T ss_pred             eeeecccCC-ccC-CCcccccCccceeecCCCccceeeccccCccceeEE
Confidence            888755432 233 35545555422  22445666889999999887766

>PF07855 DUF1649: Protein of unknown function (DUF1649); InterPro: IPR012445 This family represents Autophagy-related protein 101

Probab=98.44  E-value=7.2e-06  Score=66.33  Aligned_cols=124  Identities=15%  Similarity=0.277  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCcccc--eeeeccceeeeccChhHHHHHHHHHHHHHHHHHcCCcc--------EEEE
Q 028778           14 ARILAEFLEVAITSVVFLKGLYPSGAFE--RRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVE--------RVAV   83 (204)
Q Consensus        14 ~~~v~efLevaih~ILY~R~vYP~~~F~--~~r~ynl~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l~--------kl~l   83 (204)
                      ...+.|-+...+|+|||+|-+ +.=.-.  ..-.+|+....+.+|+|..-|++-++++..++.++.-.        +|+|
T Consensus         7 ~~~v~evv~~ilHTIlFhR~~-G~v~p~dv~~e~ldiTy~~~~~~el~~~Id~ki~~f~~~l~~~~~~~~~~~~~gqI~l   85 (163)
T PF07855_consen    7 RSQVREVVKAILHTILFHRAF-GTVRPKDVTCEFLDITYPRCNDPELESLIDEKINQFIRQLEKHPSKSSNGLGRGQISL   85 (163)
T ss_pred             HHHHHHHHHHHHHHHHhhhcc-CcccccccccceecceeeccCcHHHHHHHHHHHHHHHHHHHhCcCccCCCcceEEEEE
Confidence            356889999999999999933 333333  33457888888999999999999999999999877655        8888


Q ss_pred             EEECCC------------CceeeEEEEeeeeccCCCC---CCChhHHHHHHHHHHHHHHhhcc----cCCCCCC
Q 028778           84 IFSNAN------------NVPLERYVFKIMVNQSYGS---MVEEGHLEFSLRSFLIKLSVSKS----LSKVLPQ  138 (204)
Q Consensus        84 vI~~~~------------~~~lEr~~Fdi~~~~~~~~---~~~~~~ie~~~ra~L~~l~~~~~----~Lp~l~~  138 (204)
                      .++.+.            ..+.|+|+.++...+..+.   ......+.++|+..+.+|...+.    .+||++.
T Consensus        86 ~F~ekr~kk~WF~~~~~e~v~WE~W~I~v~v~~~~~~~er~~~r~~~~~~L~~~l~~Ii~~vn~~kdhIPpIts  159 (163)
T PF07855_consen   86 QFYEKRRKKSWFVGSGEEEVPWEQWTINVTVATPRTESERQKVREAVEDSLREALFKIIEIVNRHKDHIPPITS  159 (163)
T ss_pred             EEEeecccccccccCCcccccceEEEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHHHHCcCcccCCCCCC
Confidence            888643            2488999999988754322   12334688899999999987654    6677754

>PF10033 ATG13: Autophagy-related protein 13; InterPro: IPR018731 Members of this family of phosphoproteins are involved in cytoplasm to vacuole transport (Cvt), and more specifically in Cvt vesicle formation

Probab=94.35  E-value=0.46  Score=40.40  Aligned_cols=124  Identities=15%  Similarity=0.137  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhhhccC--------CCCCcccceee-eccceeeeccChhHHHHHHHHHHHHHHHHHcCCc----cEEEE
Q 028778           17 LAEFLEVAITSVVFLKG--------LYPSGAFERRR-YMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLV----ERVAV   83 (204)
Q Consensus        17 v~efLevaih~ILY~R~--------vYP~~~F~~~r-~ynl~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l----~kl~l   83 (204)
                      |.+|+.-+.+.|+--|-        ......+.+.- -||+-+  -..|.+.+       .++.|...+..    .-+++
T Consensus         1 I~~F~~Kaa~iIl~SR~~~~~~~~~~~~~~~~~~~nkWFNL~~--~e~~~~~~-------~l~~w~~~~~~~~~~pPlvI   71 (233)
T PF10033_consen    1 IQNFFLKAAQIILQSRLNLSPSSSSSSSSSSSRKRNKWFNLEI--DESDELRE-------ELKRWRSCSDLESRLPPLVI   71 (233)
T ss_pred             ChHHHHHHHHHheeeccccCCCcccccccCCCCCCCccEeecC--CCcHHHHH-------HHHHhhhcccccCCCCCEEE
Confidence            46899999999999998        22233343333 499886  55555554       44556653332    23444


Q ss_pred             EEE-CC----------------------------CCceeeEEEEeeeeccC----CCCCCChhHHHHHHHHHHHHHHhhc
Q 028778           84 IFS-NA----------------------------NNVPLERYVFKIMVNQS----YGSMVEEGHLEFSLRSFLIKLSVSK  130 (204)
Q Consensus        84 vI~-~~----------------------------~~~~lEr~~Fdi~~~~~----~~~~~~~~~ie~~~ra~L~~l~~~~  130 (204)
                      -|+ +.                            .+.++|||++.++..+.    .+.......+++.+-=.+|.|-+.+
T Consensus        72 ei~Ld~~~l~~~~~l~l~d~~g~~~~v~~~~~~~~~ivLERW~i~~~~~~~~~~~~~~~~~l~~vYK~~ivLfRSLys~~  151 (233)
T PF10033_consen   72 EIYLDTRQLSSNQSLVLKDDDGKRWDVCKGRSKKSEIVLERWLIELDSSSSPPSPSDSGPELPTVYKRSIVLFRSLYSLT  151 (233)
T ss_pred             EEEEecCCCCCCCceEecCCCCceeeecccccCCCcEEEEEEEEEEecCCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence            443 11                            14589999999982111    1223456789999999999998888


Q ss_pred             ccCCCC----------CCCeeEEEEEEEe
Q 028778          131 SLSKVL----------PQGCRWEITAYFC  149 (204)
Q Consensus       131 ~~Lp~l----------~~~~tF~i~v~~~  149 (204)
                      ..||.-          -....|+|.....
T Consensus       152 RlLPA~kl~~~l~~~~~~~~~l~i~~Ri~  180 (233)
T PF10033_consen  152 RLLPAYKLFRRLAKSSSSSSSLSIGYRIS  180 (233)
T ss_pred             HhChHHHHHHHhhhccCCCCcceeEEEEe
Confidence            888742          1235677665443

They are probably involved in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage [, , ].

>KOG4493 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.13  E-value=4.1  Score=34.22  Aligned_cols=129  Identities=12%  Similarity=0.248  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhhhccCC----CCCc---ccceee-------eccceeeeccChhHHHHHHHHHHHHHHHHHcCC---cc
Q 028778           17 LAEFLEVAITSVVFLKGL----YPSG---AFERRR-------YMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGL---VE   79 (204)
Q Consensus        17 v~efLevaih~ILY~R~v----YP~~---~F~~~r-------~ynl~v~~sr~p~l~~YI~~~l~~v~~~L~~g~---l~   79 (204)
                      +.|-..+.+|++||+|.+    |-.+   +|....       .+++....+...+|+.=|+..+.+.++||++..   +.
T Consensus        17 v~eaV~~ifh~vLlhR~vgkf~y~~~~~~s~GtVg~kdvdce~iDiTYV~~~s~EL~~kl~~~i~qF~~~ir~~~~~g~g   96 (219)
T KOG4493|consen   17 VTEAVTCIFHTVLLHREVGKFVYGVELHRSFGTVGAKDVDCEFIDITYVRCVSAELNEKLDEKIAQFIDTIRNEAGAGVG   96 (219)
T ss_pred             cchhhhhHHHHHHHHHhhhheEecceeEEEeccccccccceeEEEEEEEEechHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            567788899999999986    2222   222222       134444567788899999999999999998654   56


Q ss_pred             EEEEEEECCC----------CceeeEEEEeeeeccCCC---CCCChhHHHHHHHHHHHHH---HhhcccCCCCCCCeeEE
Q 028778           80 RVAVIFSNAN----------NVPLERYVFKIMVNQSYG---SMVEEGHLEFSLRSFLIKL---SVSKSLSKVLPQGCRWE  143 (204)
Q Consensus        80 kl~lvI~~~~----------~~~lEr~~Fdi~~~~~~~---~~~~~~~ie~~~ra~L~~l---~~~~~~Lp~l~~~~tF~  143 (204)
                      .+.|-+|.+.          +-|.|.|...++.....+   ......++-+-+-+-..+|   ...-+++|..|....|.
T Consensus        97 Qi~L~FYekskK~~Wf~~~e~ipWEqW~l~l~vl~~~~~~e~q~~rs~vs~~l~ekv~~i~E~~Nr~~y~pk~ptq~e~~  176 (219)
T KOG4493|consen   97 QISLEFYEKSKKKRWFFKDETIPWEQWTLHLDVLEEESEDERQYCRSHVSDLLEEKVEQIVEAMNRRSYLPKMPTQSESD  176 (219)
T ss_pred             eEeeeeeecccCCCCCcCCCCccceeEEEEEEEeecccccccHHHHHHHHHHHHHHHHHHHHHhhhhccCcCCchhhhcc
Confidence            7999999872          358999999988875421   2222222333333333333   33445778777766655


Q ss_pred             EE
Q 028778          144 IT  145 (204)
Q Consensus       144 i~  145 (204)
                      ..
T Consensus       177 ~i  178 (219)
T KOG4493|consen  177 NI  178 (219)
T ss_pred             hh
Confidence            43

>PF06581 p31comet: Mad1 and Cdc20-bound-Mad2 binding; InterPro: IPR009511 This entry represents Mad1 and Cdc20-bound-Mad2 binding proteins that are involved in the cell-cycle surveillance mechanism called the spindle checkpoint []

Probab=85.09  E-value=12  Score=32.49  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHHhhhccCCCCCc----c-cceeeec--cc---eeeeccChh------HHHHHHHHHHHHH
Q 028778            7 QSPQVETARILAEFLEVAITSVVFLKGLYPSG----A-FERRRYM--NL---VVQRARHPQ------LRDYIHSSVSSLL   70 (204)
Q Consensus         7 ~~~~~~s~~~v~efLevaih~ILY~R~vYP~~----~-F~~~r~y--nl---~v~~sr~p~------l~~YI~~~l~~v~   70 (204)
                      -+|++....+++|+|+    .|||+|+=-|-.    . |.++..-  ..   .+..+.+-.      +-+=+++++..+.
T Consensus        54 ~vtqd~ccrfV~ElLK----~iLYQRqQiPlpYeQL~~f~~k~pq~~d~~~kk~~~~~~~~~kKcqq~L~eLE~vl~hLe  129 (264)
T PF06581_consen   54 PVTQDGCCRFVCELLK----HILYQRQQIPLPYEQLAFFYRKSPQAKDDVRKKVSFSTEQSNKKCQQALQELESVLSHLE  129 (264)
T ss_dssp             ---HHHHHHHHHHHHH----HHHHHTTSSSS-HHHHT-----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHH----HHHhhhhcCCChHHHHHHHHhcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            4678888888888876    589999998873    2 2222110  00   001111111      2223444455554


Q ss_pred             HHHHcCCccEEEEEEECCCCceeeEEEEeeeeccCCCCCCChhHHHHHHHHHHHHHHhhcc
Q 028778           71 LFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKS  131 (204)
Q Consensus        71 ~~L~~g~l~kl~lvI~~~~~~~lEr~~Fdi~~~~~~~~~~~~~~ie~~~ra~L~~l~~~~~  131 (204)
                      ..-....|.++.+.+=..--.|-|-|..|+......+.+.+. ....=+|.++|.|..++.
T Consensus       130 ~lFs~t~Vp~VLILLGgt~~SPKE~YeInl~~l~~~s~e~sl-st~~clRkLfRsLf~aD~  189 (264)
T PF06581_consen  130 QLFSLTLVPRVLILLGGTAVSPKEFYEINLERLVPNSKEQSL-STAVCLRKLFRSLFTADA  189 (264)
T ss_dssp             HHHHHS---EEEEEESS-SSS-SEEEEEE-TTS--------S-HHHHHHHHHHHHHHHTTT
T ss_pred             HHHhcCccceEEEEecCccCCcceeEEEcchhhccccccccc-ccHHHHHHHHHHHHcccc
Confidence            444566688876666444456889999998643222211122 345557777787777765

This mechanism monitors the proper bipolar attachment of sister chromatids to spindle microtubules and ensures the fidelity of chromosome segregation during mitosis. A key player in mitosis is Mad2, which exhibits an unusual two-state behaviour. A Mad1-Mad2 core complex recruits cytosolic Mad2 to kinetochores through Mad2 dimerisation and converts Mad2 to a conformer amenable to Cdc20 binding. p31comet inactivates the checkpoint by binding to Mad1- or Cdc20-bound Mad2 in such a way as to stop Mad2 activation and to promote the dissociation of the Mad2-Cdc20 complex [].; GO: 0007096 regulation of exit from mitosis, 0005634 nucleus; PDB: 2QYF_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
4fjo_C	210	Structure Of The Rev1 Ctd-Rev37-Pol Kappa Rir Compl		9e-21
3abd_A	227	Structure Of Human Rev7 In Complex With A Human Rev		4e-20
2v64_D	207	Crystallographic Structure Of The Conformational Di		6e-07
1duj_A	187	Solution Structure Of The Spindle Assembly Checkpoi		2e-06
1klq_A	197	The Mad2 Spindle Checkpoint Protein Undergoes Simil		2e-06
1s2h_A	206	The Mad2 Spindle Checkpoint Protein Possesses Two D		2e-06
1go4_A	205	Crystal Structure Of Mad1-Mad2 Reveals A Conserved		2e-06
2v64_A	213	Crystallographic Structure Of The Conformational Di		2e-06
3gmh_A	207	Crystal Structure Of The Mad2 Dimer Length = 207		2e-06
2qyf_A	206	Crystal Structure Of The Mad2P31(COMET)MAD2-Binding		2e-06
2vfx_A	206	Structure Of The Symmetric Mad2 Dimer Length = 206		3e-06
4aez_B	203	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-06

>pdb|4FJO|C Chain C, Structure Of The Rev1 Ctd-Rev37-Pol Kappa Rir Complex Length = 210

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 14/205 (6%)
Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A +L+EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct: 4   LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62
Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
           YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I    +++ +  S++   H+E
Sbjct: 63  YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLL--SHVE 120
Query: 117 FSLRSFLIXXXXXXXXXXXXPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQW 171
             L +F++            P GC + +      A   ++ ++   KD   WI  D +  
Sbjct: 121 QLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179
Query: 172 Q-QPPLITPIKSMSSDSLSVQLYLE 195
               P + P+K+M+SD L +QLY+E
Sbjct: 180 HMHDPRLIPLKTMTSDILKMQLYVE 204

>pdb|3ABD|A Chain A, Structure Of Human Rev7 In Complex With A Human Rev3 Fragment In A Monoclinic Crystal Length = 227

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 10/203 (4%)
Query: 1   MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
           + R D    QV  A +L EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  
Sbjct: 20  LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 78
Query: 61  YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
           YI  ++  +   ++K  VE+V V+  +  + P+E++VF+I      S  S     H+E  
Sbjct: 79  YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQL 138
Query: 119 LRSFLIXXXXXXXXXXXXPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
           L +F++            P GC + +      A   ++ ++   KD   WI  D +    
Sbjct: 139 LAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 197
Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
             P + P+K+M+SD L +QLY+E
Sbjct: 198 HDPRLIPLKTMTSDILKMQLYVE 220

>pdb|2V64|D Chain D, Crystallographic Structure Of The Conformational Dimer Of The Spindle Assembly Checkpoint Protein Mad2. Length = 207

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 27/174 (15%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 24  SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 83
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIXXXXXXX 131
           + K  V+++ V+ SN  +   LER+ F I  ++  G   ++  ++  +RS +        
Sbjct: 84  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKGSGEKSQKA-IQDEIRSVI-------- 134
Query: 132 XXXXXPQGCRWEITAYFCSLPQVNTSKDAELWIPTDT-----KQWQQ--PPLIT 178
                      +ITA    LP +  S   +L I TD      ++W++  P  IT
Sbjct: 135 ----------RQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFIT 178

>pdb|1DUJ|A Chain A, Solution Structure Of The Spindle Assembly Checkpoint Protein Human Mad2 Length = 187

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 8   SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 67
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
           + K  V+++ V+ SN  +   LER+ F I  +++
Sbjct: 68  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 101

>pdb|1KLQ|A Chain A, The Mad2 Spindle Checkpoint Protein Undergoes Similar Major Conformational Changes Upon Binding To Either Mad1 Or Cdc20 Length = 197

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 8   SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 67
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
           + K  V+++ V+ SN  +   LER+ F I  +++
Sbjct: 68  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 101

>pdb|1S2H|A Chain A, The Mad2 Spindle Checkpoint Protein Possesses Two Distinct Natively Folded States Length = 206

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 17  SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 76
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
           + K  V+++ V+ SN  +   LER+ F I  +++
Sbjct: 77  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 110

>pdb|1GO4|A Chain A, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2 Binding Motif In Mad1 And Cdc20. Length = 205

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 16  SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 75
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
           + K  V+++ V+ SN  +   LER+ F I  +++
Sbjct: 76  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 109

>pdb|2V64|A Chain A, Crystallographic Structure Of The Conformational Dimer Of The Spindle Assembly Checkpoint Protein Mad2. Length = 213

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 24  SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 83
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
           + K  V+++ V+ SN  +   LER+ F I  +++
Sbjct: 84  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 117

>pdb|3GMH|A Chain A, Crystal Structure Of The Mad2 Dimer Length = 207

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 18  SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 77
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
           + K  V+++ V+ SN  +   LER+ F I  +++
Sbjct: 78  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 111

>pdb|2QYF|A Chain A, Crystal Structure Of The Mad2P31(COMET)MAD2-Binding Peptide Ternary Complex Length = 206

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 17  SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 76
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
           + K  V+++ V+ SN  +   LER+ F I  +++
Sbjct: 77  LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 110

>pdb|2VFX|A Chain A, Structure Of The Symmetric Mad2 Dimer Length = 206

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  +
Sbjct: 17  SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 76
Query: 73  IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
           + K  V+++ V+ SN  +   LER+ F I  +++
Sbjct: 77  LYKSSVQKLVVVISNIESGEVLERWQFDIESDKT 110

>pdb|4AEZ|B Chain B, Crystal Structure Of Mitotic Checkpoint Complex Length = 203

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 13  TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
           ++++++EF E A+ S++F +G+YP+  F+  R   L +  +   +++ YI   VS L  +
Sbjct: 15  SSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKW 74
Query: 73  I-QKGLVERVAVIFSNANNVPLERYVFKI-MVN-----QSYGSMVEEGHLEFSLRSFLIX 125
           +  K + + + VI S  +   LER+ F + MV+     Q+ G+  +E  ++  +++ +  
Sbjct: 75  MFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQ 134
Query: 126 XXXXXXXXXXXPQGCRWEITAYFCSLPQVNTSKDAELWIPTD 167
                       + C + +  Y          KD+E  +PTD
Sbjct: 135 ITATVTFLPQLEEQCTFNVLVY--------ADKDSE--VPTD 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3abd_A	227	Mitotic spindle assembly checkpoint protein MAD2B;	6e-45
2vfx_A	206	Mitotic spindle assembly checkpoint protein MAD2A;	1e-40
4aez_B	203	MAD2, mitotic spindle checkpoint component MAD2; c	3e-37

>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C* Length = 227

 Score =  148 bits (373), Expect = 6e-45
 Identities = 59/199 (29%), Positives = 105/199 (52%), Gaps = 7/199 (3%)

Query: 4   SDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIH 63
               +     A +L EFLEVA+  +++++ +YP G F++R+  N+ VQ + HP+L  YI 
Sbjct: 22  RQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQ 81

Query: 64  SSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQ--SYGSMVEEGHLEFSLRS 121
            ++  +   ++K  VE+V V+  +  + P+E++VF+I      S  S     H+E  L +
Sbjct: 82  DTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLAA 141

Query: 122 FLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAEL----WIPTDTKQWQ-QPPL 176
           F++K+SV  ++    P GC + +  +       N  K   +    WI  D +      P 
Sbjct: 142 FILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPR 201

Query: 177 ITPIKSMSSDSLSVQLYLE 195
           + P+K+M+SD L +QLY+E
Sbjct: 202 LIPLKTMTSDILKMQLYVE 220

>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A Length = 206

 Score =  135 bits (342), Expect = 1e-40
 Identities = 39/196 (19%), Positives = 86/196 (43%), Gaps = 18/196 (9%)

Query: 9   PQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSS 68
               +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  
Sbjct: 13  TARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQ 72

Query: 69  LLLFIQKGLVERVAVIFSNA-NNVPLERYVFKIMVNQSYGSM-----VEEGHLEFSLRSF 122
           L  ++ K  V+++ V+ SN  +   LER+ F I  +++           +  ++  +RS 
Sbjct: 73  LKDWLYKSSVQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKSQKAIQDEIRSV 132

Query: 123 LIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAEL---WIPTDTKQWQQPPLITP 179
           + +++ + +   +L   C +++  Y        T KD  +   W  +  +       +  
Sbjct: 133 IRQITATVTFLPLLEVSCSFDLLIY--------TDKDLVVPEKWEESGPQFITNSEEV-R 183

Query: 180 IKSMSSDSLSVQLYLE 195
           ++S ++    V   + 
Sbjct: 184 LRSFTTTIHKVNSMVA 199

>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 203

 Score =  127 bits (320), Expect = 3e-37
 Identities = 37/192 (19%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 14  ARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFI 73
           +++++EF E A+ S++F +G+YP+  F+  R   L +  +   +++ YI   VS L  ++
Sbjct: 16  SKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWM 75

Query: 74  QKGLVERVA-VIFSNANNVPLERYVFKIMV------NQSYGSMVEEGHLEFSLRSFLIKL 126
               ++++  VI S  +   LER+ F + +       Q+ G+  +E  ++  +++ + ++
Sbjct: 76  FAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQI 135

Query: 127 SVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAEL---WIPTDTKQWQQPPLITPIKSM 183
           + + +    L + C + +  Y          KD+E+   W+ +D +  +    +  ++S 
Sbjct: 136 TATVTFLPQLEEQCTFNVLVY--------ADKDSEVPTDWVDSDPRILRDAEQV-QLRSF 186

Query: 184 SSDSLSVQLYLE 195
           S+    +   + 
Sbjct: 187 STSMHKIDCQVA 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1go4a_	196	d.135.1.1 (A:) The spindle assembly checkpoint pro	3e-34

>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: Alpha and beta proteins (a+b)
fold: The spindle assembly checkpoint protein mad2
superfamily: The spindle assembly checkpoint protein mad2
family: The spindle assembly checkpoint protein mad2
domain: The spindle assembly checkpoint protein mad2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 3e-34
 Identities = 39/191 (20%), Positives = 83/191 (43%), Gaps = 18/191 (9%)

Query: 12  ETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLL 71
            +A I+AEF    I S+++ +G+YPS  F R +   L +      +L  Y+++ V  L  
Sbjct: 8   GSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKD 67

Query: 72  FIQKGLVERVA-VIFSNANNVPLERYVFKI-----MVNQSYGSMVEEGHLEFSLRSFLIK 125
           ++ K  V+++  VI +  +   LER+ F I       + S      +  ++  +RS + +
Sbjct: 68  WLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIAQ 127

Query: 126 LSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAEL---WIPTDTKQWQQPPLITPIKS 182
           ++ + +   +L   C +++  Y        T KD  +   W  +  +       +  ++S
Sbjct: 128 ITATVTFLPLLEVSCSFDLLIY--------TDKDLVVPEKWEESGPQFITNSEEV-RLRS 178

Query: 183 MSSDSLSVQLY 193
            ++    V   
Sbjct: 179 FTTTIHKVNSM 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1go4a_	196	The spindle assembly checkpoint protein mad2 {Huma	100.0

>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: The spindle assembly checkpoint protein mad2
superfamily: The spindle assembly checkpoint protein mad2
family: The spindle assembly checkpoint protein mad2
domain: The spindle assembly checkpoint protein mad2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=304.70  Aligned_cols=188  Identities=20%  Similarity=0.330  Sum_probs=171.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             68889587899999999999877643269999964100332030122116966999999999999999983974479999
Q 028778            5 DAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVI   84 (204)
Q Consensus         5 ~~~~~~~~s~~~i~efLevaih~ILY~R~vYP~~~F~~~k~y~~~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l~ki~lv   84 (204)
                      +|.+|+++|+++++|||++|||+|||+|||||+++|+++++||++|+++|||++++||++++.++.+||.+|.+++++++
T Consensus         1 ~~~it~k~S~~~v~e~l~~ai~~ILY~RgiyP~~~F~~~~~~~l~v~~~~~~~l~~yi~~~~~~v~~~L~~~~l~~l~lv   80 (196)
T d1go4a_           1 EQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVV   80 (196)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCHHHEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             98433778999999999999999999704799688613257780589840888999999999999999984962799999


Q ss_pred             EECCC-CCEEEEEEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf             97799-932457999633215889-----988956899999999999995321278999980477999972088888887
Q 028778           85 FSNAN-NVPLERYVFKIMVNQSYG-----SMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSK  158 (204)
Q Consensus        85 I~~~~-~~~lEr~~Fdi~~~~~~~-----~~~~~~~ie~~~ra~l~~l~~~~~~Lp~lp~~~tF~i~v~~~~~~~~~~~~  158 (204)
                      |++.+ ++++|||+|+|++.+...     ...+..++++++|++|+||++++++||+||++|+|+|++||.++..     
T Consensus        81 I~~~~~~~vlEry~F~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ir~L~~~~~~Lp~Lp~~~tf~i~~yt~~d~~-----  155 (196)
T d1go4a_          81 ISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIAQITATVTFLPLLEVSCSFDLLIYTDKDLV-----  155 (196)
T ss_dssp             EEETTTCCEEEEEEEEEEECGGGGSCSSCBCCCHHHHHHHHHHHHHHHHHGGGTSCCCCSCEEEEEEEEEESSCC-----
T ss_pred             EEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC-----
T ss_conf             970899971589999988146677666566578999999999999999999712899998848999999079889-----


Q ss_pred             CCCCCEECCCCCCCCCCCEEEEEEEECCCEEEEEEEEECC
Q ss_conf             8899222695576899924544675518549999986058
Q 028778          159 DAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENPS  198 (204)
Q Consensus       159 ~~~~Wi~ad~~~~~~~~~~~Pl~sv~~~~l~~~~~vE~~~  198 (204)
                      .|+.|.++++.. ..+++.+.+|+++|+.|++++.|-+..
T Consensus       156 ~P~~w~~~~~~~-i~~~e~v~lrs~sT~~H~v~~~V~yk~  194 (196)
T d1go4a_         156 VPEKWEESGPQF-ITNSEEVRLRSFTTTIHKVNSMVAYKI  194 (196)
T ss_dssp             CCTTEEECCCCC-CBSCEEEECCCEECSSEEEEEEEEECC
T ss_pred             CCCCCCCCCCEE-CCCCCEEEEEEEECCCCEEEEEEEEEC
T ss_conf             997646788712-477727877578337848846999816