BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028779
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 132 bits (333), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Query: 13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L I++ +VT +VPP+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 328
Query: 72 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
+LA+AK +K+DLSS+++V SGAAPLGKEL + P+A + QGYG+TE + M
Sbjct: 329 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388
Query: 132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
FA G+ G + E IV DT L NQ GEI +RG +M+G +
Sbjct: 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYL 444
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Query: 15 VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ L IEK++V+ VVPP+++
Sbjct: 225 VILCVLPMFHIYALNSIMLCG-LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMM 283
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
++AK + K DLSSL+++ SG APLGKEL + P A + QGYG+TE + M
Sbjct: 284 SIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCL 343
Query: 134 SFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
+FA G+ G + E IV +T LP NQ GEI +RG +M+G +
Sbjct: 344 AFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYL 397
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LAK L+ K+DLS+L + SG APL KE+ E AK + QGYGLTET+ +
Sbjct: 298 SFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
+ G G+ G + P EA +V +DT K L NQ GE+ +RGP +M G
Sbjct: 357 -TPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSG 405
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 7/170 (4%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T++ +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
K L+ K+DLS+L + SG APL KE+ E A+ V QGYGLTET+ I T E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
G G++G + P +A ++ +DT+K L PN+ GE+ ++GP +M+G +
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYV 404
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 3/170 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
AK L+ K+DLS+L + SG APL KE+ E AK + QGYGLTET+ +
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 351
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
+ G G+ G + P EA +V +DT K L NQ GE+ +RGP +M G
Sbjct: 352 -TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 400
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 3/170 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
AK L+ K+DLS+L + SG APL KE+ E AK + QGYGLTET+ +
Sbjct: 298 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
+ G G+ G + P EA +V +DT K L NQ GE+ +RGP +M G
Sbjct: 357 -TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 405
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 3/170 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G ++LM +F+ E+FLR+++ +++ +VP L
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
AK L+ K+DLS+L + SG APL KE+ E AK + QGYGLTET+ +
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 351
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
+ G G+ G + P EA +V +DT K L NQ GE+ +RGP +M G
Sbjct: 352 -TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 400
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T + +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
K L+ K+DLS+L + SG APL KE+ E A+ V QGYGLTET+ I T E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
G G++G + P +A ++ +DT+K L PN+ GE+ ++GP +M+G
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKG 402
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Query: 17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
L V+P H FG+ T G L G ++++ KFD E FL+ ++ ++ T + +VP L L
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
K L+ K+DLS+L + SG APL KE+ E A+ V QGYGLTET+ I T E
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
G G++G + P +A ++ +DT+K L PN+ GE+ ++GP +M+G
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKG 402
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D L V+P H FG+ T G L G I+LM +F+ E+FLR+++ +++ +VP L
Sbjct: 268 DTAILTVIPFHHGFGM-FTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF 326
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
AK LV K+DLS+L + SG APL KE+ E AK + QGYGLTET+ A +
Sbjct: 327 SFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTS-AIII 385
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
G+ G + P A IV +DT K L NQ GE+ ++GP +M+G
Sbjct: 386 TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKG 435
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 14/170 (8%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L +LPLFHV GL ++ Q Q G ++ AKFD R IE H+VT + P++
Sbjct: 203 VNLGMLPLFHVTGLGLMLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261
Query: 75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
+ + L+SL+ V P E +E P+AT +G +ETSG++T
Sbjct: 262 ILDQAAPAQ--LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST---- 312
Query: 135 FAGSRNI-GSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRG 182
FA R+ SAG P + VD + +PLPP ++GEI LRGP + +G
Sbjct: 313 FAPYRDRPKSAGR--PLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKG 360
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 5/170 (2%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L I + KFD + L R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
L + + K +L SG+APL + E + A V++ YG TET+
Sbjct: 254 TRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHA-VLERYGXTETN--XNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
N + G R G+ G PGV A + +T K LP +G I ++GPN+ +G
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKG 360
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
L + + ++L SG+APL + E + A V++ YG+TET+
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
N + G R G+ G PGV A + +T LP +G I + GPN+ G
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
L + + ++L SG+APL + E + A V++ YG+TET+
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
N + G R G+ G PGV A + +T LP +G I + GPN+ G
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
D V + LP++H GL V + L +I + FD + L + R T + VP
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
L + + ++L SG+APL + E + A V++ YG+TET+
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
N + G R G+ G PGV A + +T LP +G I + GPN+ G
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
+ D +L VLP++H+ GL+V+ ++ G + ++ KF+ E L I+ R+THI +VP
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQ 260
Query: 71 LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSG-- 127
+ L + GL + ++L + L G A L ++E + N+P + +G+TET
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP---IYNSFGMTETCSQF 314
Query: 128 -IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRGPNMMRGIM 184
AT E A +G A +VD + P + GE+ ++G N+M G +
Sbjct: 315 LTATPEMLHARPDTVGMPSA----------NVDVKIKNPNKEGHGELMIKGANVMNGYL 363
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 21 PLFHV--FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK- 77
P FH FGL + + G+ ++ F+ E IEK++ T W VPP + L
Sbjct: 229 PXFHSAEFGLVNLX---VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 78 -HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQGYGLTETSGIAT 130
K +D S LK+ +GA P+ L+E+ K N P Q +G TE T
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASII 190
++ + G +E ++S++ + L + GEI +RGPN+ +G
Sbjct: 346 TNPPLRLDKST-TQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKEN 404
Query: 191 LSSWGFRKIMHSFI 204
W + + F
Sbjct: 405 QECWWYDEKGRKFF 418
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V + LPLFHV GL + G L++G + + +F E R + T ++ VP +
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHR 256
Query: 75 LAKH-----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
+A+ L K L+ +L+ SG+A L E A VI+ YG+TET +
Sbjct: 257 IAETLPADPELAKA--LAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTET--LM 311
Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNM 179
G G+ G PGVE +V D L +GEI +RGPN+
Sbjct: 312 NTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNL 363
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
L LP+FHV L + + +G +I M +FD I + RV VP ++ +
Sbjct: 214 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 272
Query: 76 AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
+ + D + +G AP+ + L++ AKN+ V+QGY LTE+ G T+ S
Sbjct: 273 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 329
Query: 135 FAGSRNIGSAG 145
R GSAG
Sbjct: 330 EDALRKAGSAG 340
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
L LP+FHV L + + +G +I M +FD I + RV VP ++ +
Sbjct: 200 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 258
Query: 76 AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
+ + D + +G AP+ + L++ AKN+ V+QGY LTE+ G T+ S
Sbjct: 259 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 315
Query: 135 FAGSRNIGSAG 145
R GSAG
Sbjct: 316 EDALRKAGSAG 326
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 15 VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V+L LP+ H + L+ G L G ++L + IE+ +VT +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE----TSGIA 129
++ DLSSL+++ G A E K V T+ Q +G+ E + +
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGLVNYTRLD 343
Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
E ++ ++P E+ + D + + P + G + RGP +RG
Sbjct: 344 DPEEIIVNTQ----GKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRG 391
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 16 FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
+LC +P H + ++ + G G ++L A + IEKH+V +VPP + +
Sbjct: 228 YLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-S 286
Query: 75 LAKHGLVK---KFDLSSLKLVGSGAAPLGKELMEECAKNVPSA---TVIQGYGLTE-TSG 127
L L++ + L+SLKL+ G A L L A +P+ + Q +G+ E
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATL----AARIPAEIGCQLQQVFGMAEGLVN 342
Query: 128 IATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
+++S + I + G + P E + + PLP ++G + RGP RG
Sbjct: 343 YTRLDDS--AEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMTRGPYTFRG 395
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 5/170 (2%)
Query: 15 VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
V+L LP H + L+ G L G ++L + IE+ +VT +VPPL
Sbjct: 225 VYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAX 284
Query: 74 ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
++ DLSSL+++ G A E K V T+ Q +G E G+
Sbjct: 285 VWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGXAE--GLVNYTR 341
Query: 134 SFAGSRNI-GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
I + G + V D + + P + G + RGP +RG
Sbjct: 342 LDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRG 391
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L V+P+FHV + L ++ + D + + VT VP + LA
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 280
Query: 75 LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA + L +L+ +VG AAP + L+ + V QGYGLTETS +
Sbjct: 281 LADYLESTGHRLKTLRRLVVGGSAAP--RSLIARFERM--GVEVRQGYGLTETSPVVVQN 336
Query: 133 ------NSFAGSRNI---GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGP 177
S + + G P V L V+ + +P+P + LGE+ L+GP
Sbjct: 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVR-LRVADEEGRPVPKDGKALGEVQLKGP 391
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 11/167 (6%)
Query: 16 FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
LC LP H F L+ G L G C+++ + I++H+V +VP ++
Sbjct: 235 LLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIM 294
Query: 75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP---SATVIQGYGLTETSGIATM 131
+ K + SLKL+ G G E A+ VP + + Q +G+ E G+
Sbjct: 295 WLEKAAQYKDQIQSLKLLQVG----GASFPESLARQVPEVLNCKLQQVFGMAE--GLVNY 348
Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGP 177
I + + I VD Q + +P ++G + RGP
Sbjct: 349 TRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGP 395
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVS 157
G M G+ + + A P GV+ +V
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD 450
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V GYG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPG 150
G+ +APG
Sbjct: 317 QPKTGTE-------MAPG 327
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVS 157
G M G+ + + A P GV+ +V
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD 450
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVS 157
G M G+ + + A P GV+ +V
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD 450
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVS 157
G M G+ + + A P GV+ +V
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD 450
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVS 157
G M G+ + + A P GV+ +V
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD 450
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVS 157
G M G+ + + A P GV+ +V
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD 450
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
++ C + V G + + G L G+ ++ + ++KH+V ++ P
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71 LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
I AL G ++ D SSL+++GS P+ E E K + V+ + TET
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVS 157
G M G+ + + A P GV+ +V
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVD 450
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V YG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPG 150
G+ +APG
Sbjct: 317 QPKTGTE-------MAPG 327
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 1 MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRA 56
++TM + VF + + G + G L G ++ A + +
Sbjct: 292 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 57 IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA 114
I++H+VT +V P + L + G ++ L SL+ +GS P+ E+ E ++ +
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 411
Query: 115 T--VIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164
++ Y TE+ S + T GSA G++A+++ +T + L
Sbjct: 412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 464
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 109 KNVPSATVIQGYGLTE-TSGIATME--NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165
+ P A + YG TE T + ++E N G P + I+ + Q PLP
Sbjct: 282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQ-PLP 340
Query: 166 PNQLGEIWLRGPNMMRGIM----LIASIILS---SWGFRKIMHSFI 204
+ GEI + GP++ RG + L S W +R FI
Sbjct: 341 EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V YG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPG 150
G+ +APG
Sbjct: 317 QPKTGTE-------MAPG 327
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V YG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPG 150
G+ +APG
Sbjct: 317 QPKTGTE-------MAPG 327
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L ++PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
LA L SL+ V A + ++E +++P V YG TE M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPG 150
G+ +APG
Sbjct: 317 QPKTGTE-------MAPG 327
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 15/175 (8%)
Query: 22 LFHV--FGLAVITC-GQLQKGSCIILM---AKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
LFH F +V G G+ ++++ A E +L I VT I P LAL
Sbjct: 221 LFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLAL 280
Query: 76 AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIAT--- 130
+ + D+S L+ V G L ++ AK + ++ GYG+TET+ T
Sbjct: 281 TEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEE 340
Query: 131 -MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
E A +I G P +V D + + P + GE+WL G + G +
Sbjct: 341 ITEAYLAQDASI--IGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYL 392
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
V L + PL+HV G + L +++ +F L+ +++ +VT ++ P + A
Sbjct: 198 VVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75 LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE 124
LA L SL+ V A ++E +++P V YG TE
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTE 308
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
+++ GS + S+G P E I+ DT P +Q+GEIW++ ++ +G
Sbjct: 364 DDNSPGSYKLVSSGN--PIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKG 412
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 100 GKELMEECAKNV----PSATVIQGYGLTE-TSGIATMENSFAGSRNIGS--AGALAPGVE 152
G+EL A+ + PSA +I YG TE T ++ +E + N G P
Sbjct: 273 GEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSP 332
Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
I+ D K L + GEI + GP + +G +
Sbjct: 333 TYIIDEDG-KELSSGEQGEIIVTGPAVSKGYL 363
>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 90 KLVGSGAAPLGKELMEECAKNV 111
KL +G+ +G++LME+CAK++
Sbjct: 227 KLSFTGSTEIGRQLMEQCAKDI 248
>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|B Chain B, Crystal Structure Of E. Coli Nadp Dependent Enzyme
pdb|3JZ4|D Chain D, Crystal Structure Of E. Coli Nadp Dependent Enzyme
Length = 481
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 90 KLVGSGAAPLGKELMEECAKNVPSATV 116
KL +G+ +G++LME+CAK++ ++
Sbjct: 227 KLSFTGSTEIGRQLMEQCAKDIKKVSL 253
>pdb|3TEF|A Chain A, Crystal Structure Of The Periplasmic
Catecholate-Siderophore Binding Protein Vctp From Vibrio
Cholerae
Length = 292
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 98 PLGKELMEECAKNVPS----ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEA 153
P + +E +K P+ A QGY E++ RN+G A+ P VEA
Sbjct: 87 PRASKSYDELSKIAPTIVFAAEADQGY----------WESTQQQWRNLGKVFAIEPAVEA 136
Query: 154 LIVSVDTQ 161
I VD Q
Sbjct: 137 KIEQVDAQ 144
>pdb|2YYB|A Chain A, Crystal Structure Of Ttha1606 From Thermus Thermophilus
Hb8
pdb|2YYB|B Chain B, Crystal Structure Of Ttha1606 From Thermus Thermophilus
Hb8
Length = 242
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 21 PLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL 80
PL H GL + L GS L+ K D ++F+ KH V H L + A H
Sbjct: 153 PLVHQGGLDHVETVILVSGSGTGLLPKVDADLFVTGEPKHSVFHETFERGLNVIYAGHYD 212
Query: 81 VKKFDLSSL 89
+ F + +L
Sbjct: 213 TETFGVKAL 221
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 94 SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSA---GALAPG 150
+G P + + ++ P+ + GYG E+ G T AG + G+A G G
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS-GTALPIGVPLAG 391
Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
A ++ D KP LGE+++ G + G +
Sbjct: 392 KRAYVLD-DDLKPAANGALGELYVAGAGLAHGYV 424
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 94 SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSA---GALAPG 150
+G P + + ++ P+ + GYG E+ G T AG + G+A G G
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS-GTALPIGVPLAG 391
Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIM 184
A ++ D KP LGE+++ G + G +
Sbjct: 392 KRAYVLD-DDLKPAANGALGELYVAGAGLAHGYV 424
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR 181
T G+ T SF G + A A GVEA+ +VDT +P ++L +I + MM
Sbjct: 120 TVGVVTRPFSFEGRKRQTQA---AAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,556,600
Number of Sequences: 62578
Number of extensions: 205097
Number of successful extensions: 616
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 56
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)