Query 028779
Match_columns 204
No_of_seqs 121 out of 1075
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 16:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1176 Acyl-CoA synthetase [L 100.0 1.8E-38 3.8E-43 262.9 19.2 195 7-203 219-413 (537)
2 COG0318 CaiC Acyl-CoA syntheta 100.0 1.9E-35 4.2E-40 248.9 18.0 197 6-203 205-406 (534)
3 KOG1177 Long chain fatty acid 100.0 1.1E-35 2.3E-40 235.4 12.5 198 5-203 267-466 (596)
4 PLN02574 4-coumarate--CoA liga 100.0 1.2E-33 2.6E-38 239.3 19.4 192 12-203 243-435 (560)
5 PRK06334 long chain fatty acid 100.0 1.1E-33 2.4E-38 238.6 18.9 197 6-203 217-415 (539)
6 PF00501 AMP-binding: AMP-bind 100.0 4.2E-34 9E-39 233.7 11.6 190 14-203 197-393 (417)
7 PLN02246 4-coumarate--CoA liga 100.0 3.2E-32 7E-37 229.5 19.9 197 7-203 218-417 (537)
8 COG0365 Acs Acyl-coenzyme A sy 100.0 1.6E-32 3.6E-37 226.6 17.2 191 6-203 206-401 (528)
9 PTZ00342 acyl-CoA synthetase; 100.0 2.7E-32 5.8E-37 236.2 16.4 188 11-203 345-575 (746)
10 PLN02614 long-chain acyl-CoA s 100.0 2.6E-32 5.7E-37 235.1 15.5 190 9-203 265-501 (666)
11 PLN02860 o-succinylbenzoate-Co 100.0 1.1E-31 2.4E-36 227.6 16.9 191 6-203 206-419 (563)
12 PRK13295 cyclohexanecarboxylat 100.0 2.7E-31 5.8E-36 224.4 19.0 194 6-203 231-424 (547)
13 COG1022 FAA1 Long-chain acyl-C 100.0 3.8E-32 8.3E-37 227.3 13.6 182 5-203 224-454 (613)
14 PRK08633 2-acyl-glycerophospho 100.0 1.9E-31 4.2E-36 241.7 18.8 198 6-204 816-1025(1146)
15 PLN02654 acetate-CoA ligase 100.0 1.7E-31 3.7E-36 230.2 17.6 197 6-203 310-518 (666)
16 PRK08314 long-chain-fatty-acid 100.0 2.2E-31 4.8E-36 224.7 17.4 195 6-203 224-421 (546)
17 PRK06145 acyl-CoA synthetase; 100.0 4.3E-31 9.4E-36 220.6 18.8 195 7-203 184-378 (497)
18 PRK08315 AMP-binding domain pr 100.0 3.4E-31 7.4E-36 224.1 18.3 198 6-203 233-432 (559)
19 PRK06839 acyl-CoA synthetase; 100.0 5.1E-31 1.1E-35 219.9 18.8 194 6-203 183-376 (496)
20 PLN02736 long-chain acyl-CoA s 100.0 5.9E-31 1.3E-35 226.5 17.4 193 6-203 255-492 (651)
21 PRK07788 acyl-CoA synthetase; 100.0 8.1E-31 1.7E-35 221.6 17.7 190 6-203 241-432 (549)
22 PRK07656 long-chain-fatty-acid 100.0 1.5E-30 3.2E-35 217.9 18.9 197 6-203 200-397 (513)
23 PLN02861 long-chain-fatty-acid 100.0 3.9E-31 8.5E-36 227.8 15.1 189 10-203 263-498 (660)
24 TIGR02275 DHB_AMP_lig 2,3-dihy 100.0 1.5E-30 3.3E-35 219.0 18.1 195 6-203 217-413 (527)
25 PRK04319 acetyl-CoA synthetase 100.0 1.4E-30 3.1E-35 221.0 18.0 194 6-203 239-437 (570)
26 PRK08316 acyl-CoA synthetase; 100.0 1.9E-30 4.1E-35 217.7 18.2 196 6-203 205-400 (523)
27 TIGR02188 Ac_CoA_lig_AcsA acet 100.0 1.5E-30 3.2E-35 223.1 17.9 197 6-203 271-480 (625)
28 PLN02330 4-coumarate--CoA liga 100.0 3E-30 6.5E-35 218.0 19.5 192 12-203 226-422 (546)
29 TIGR03208 cyc_hxne_CoA_lg cycl 100.0 3.2E-30 7E-35 217.5 18.7 194 6-203 229-422 (538)
30 PRK07514 malonyl-CoA synthase; 100.0 2.7E-30 5.9E-35 216.0 17.9 193 6-203 190-382 (504)
31 PRK00174 acetyl-CoA synthetase 100.0 3.7E-30 7.9E-35 221.1 18.9 197 6-203 280-488 (637)
32 KOG1256 Long-chain acyl-CoA sy 100.0 1.1E-30 2.4E-35 217.1 14.5 187 12-203 301-532 (691)
33 PRK07529 AMP-binding domain pr 100.0 5.4E-30 1.2E-34 219.9 19.0 193 6-203 247-450 (632)
34 PRK12583 acyl-CoA synthetase; 100.0 5.2E-30 1.1E-34 216.9 18.4 197 6-203 235-433 (558)
35 PRK07638 acyl-CoA synthetase; 100.0 6.6E-30 1.4E-34 213.1 18.7 190 6-203 177-366 (487)
36 PRK06087 short chain acyl-CoA 100.0 5.4E-30 1.2E-34 216.4 18.4 195 6-203 221-415 (547)
37 PRK05677 long-chain-fatty-acid 100.0 7.9E-30 1.7E-34 216.2 19.0 187 13-203 251-438 (562)
38 PRK03640 O-succinylbenzoic aci 100.0 7.2E-30 1.6E-34 212.4 18.3 191 6-203 175-365 (483)
39 PTZ00237 acetyl-CoA synthetase 100.0 3.4E-30 7.3E-35 221.6 15.7 192 8-203 291-497 (647)
40 PRK07786 long-chain-fatty-acid 100.0 1.5E-29 3.2E-34 213.6 19.0 192 8-203 210-404 (542)
41 PRK07787 acyl-CoA synthetase; 100.0 1.1E-29 2.4E-34 211.0 17.6 193 5-203 161-355 (471)
42 COG1021 EntE Peptide arylation 100.0 7.3E-31 1.6E-35 204.2 9.7 198 3-203 220-419 (542)
43 TIGR02316 propion_prpE propion 100.0 1.2E-29 2.6E-34 217.6 17.9 197 6-203 267-477 (628)
44 PRK09088 acyl-CoA synthetase; 100.0 2.3E-29 4.9E-34 209.9 19.1 193 8-203 171-366 (488)
45 PRK12492 long-chain-fatty-acid 100.0 2E-29 4.3E-34 213.7 18.7 188 13-203 258-446 (562)
46 PRK05605 long-chain-fatty-acid 100.0 2.2E-29 4.8E-34 213.8 18.5 189 12-203 261-450 (573)
47 PRK10946 entE enterobactin syn 100.0 1.7E-29 3.8E-34 213.0 17.7 196 5-203 215-414 (536)
48 PRK08180 feruloyl-CoA synthase 100.0 1.1E-29 2.4E-34 217.4 16.6 182 12-203 251-445 (614)
49 PRK06060 acyl-CoA synthetase; 100.0 1.8E-29 3.9E-34 219.1 17.8 189 7-203 181-370 (705)
50 PRK06188 acyl-CoA synthetase; 100.0 2.5E-29 5.4E-34 211.3 17.7 193 6-203 202-398 (524)
51 PRK09274 peptide synthase; Pro 100.0 1.2E-29 2.7E-34 214.4 15.8 191 5-203 207-425 (552)
52 PLN03051 acyl-activating enzym 100.0 2.6E-29 5.7E-34 210.2 17.0 191 7-203 154-362 (499)
53 PRK06164 acyl-CoA synthetase; 100.0 2.9E-29 6.4E-34 211.6 16.9 194 6-203 215-411 (540)
54 PRK12467 peptide synthase; Pro 100.0 1.6E-29 3.5E-34 247.5 17.5 195 5-203 3270-3476(3956)
55 PRK13382 acyl-CoA synthetase; 100.0 5E-29 1.1E-33 210.3 18.3 189 7-203 231-421 (537)
56 PRK07769 long-chain-fatty-acid 100.0 7.7E-30 1.7E-34 218.9 13.3 197 6-203 214-469 (631)
57 PRK06710 long-chain-fatty-acid 100.0 7.6E-29 1.7E-33 210.1 18.7 189 12-203 248-436 (563)
58 PRK05852 acyl-CoA synthetase; 100.0 6.3E-29 1.4E-33 209.4 17.9 195 6-203 210-413 (534)
59 TIGR02262 benz_CoA_lig benzoat 100.0 7.2E-29 1.6E-33 207.8 17.7 193 6-203 196-389 (508)
60 PRK12316 peptide synthase; Pro 100.0 2.8E-29 6.1E-34 249.0 17.0 195 5-203 688-891 (5163)
61 TIGR03098 ligase_PEP_1 acyl-Co 100.0 8.8E-29 1.9E-33 207.3 17.3 194 6-203 195-399 (515)
62 PRK06187 long-chain-fatty-acid 100.0 1.1E-28 2.4E-33 206.7 17.7 194 6-203 201-400 (521)
63 TIGR01734 D-ala-DACP-lig D-ala 100.0 8.7E-29 1.9E-33 206.9 16.8 196 6-203 175-379 (502)
64 PRK13390 acyl-CoA synthetase; 100.0 1.3E-28 2.7E-33 206.1 17.2 193 6-203 188-384 (501)
65 PRK10524 prpE propionyl-CoA sy 100.0 1.4E-28 3.1E-33 211.0 16.9 196 7-203 269-478 (629)
66 TIGR03443 alpha_am_amid L-amin 100.0 1E-28 2.3E-33 227.5 16.9 187 5-195 448-647 (1389)
67 PRK05851 long-chain-fatty-acid 100.0 5E-29 1.1E-33 209.7 13.5 193 5-203 185-401 (525)
68 PRK07059 Long-chain-fatty-acid 100.0 3.1E-28 6.6E-33 206.2 18.3 188 13-203 252-440 (557)
69 PRK06155 crotonobetaine/carnit 100.0 3.5E-28 7.5E-33 205.4 18.6 190 5-203 213-405 (542)
70 PTZ00216 acyl-CoA synthetase; 100.0 7.7E-29 1.7E-33 214.9 14.9 186 10-203 307-541 (700)
71 PRK06178 acyl-CoA synthetase; 100.0 4E-28 8.7E-33 205.9 18.9 195 8-203 246-447 (567)
72 PLN02430 long-chain-fatty-acid 100.0 2.1E-28 4.5E-33 210.8 17.0 190 9-203 262-498 (660)
73 PLN02387 long-chain-fatty-acid 100.0 7.9E-29 1.7E-33 214.6 14.3 191 9-203 288-540 (696)
74 PRK08008 caiC putative crotono 100.0 4.6E-28 9.9E-33 203.3 18.6 192 8-203 209-403 (517)
75 TIGR01733 AA-adenyl-dom amino 100.0 2.3E-28 4.9E-33 199.2 16.2 193 6-203 154-360 (408)
76 PRK05857 acyl-CoA synthetase; 100.0 2.6E-28 5.6E-33 206.1 17.0 191 8-203 209-407 (540)
77 PRK10252 entF enterobactin syn 100.0 2.1E-28 4.6E-33 224.2 17.8 196 5-203 631-842 (1296)
78 PRK12582 acyl-CoA synthetase; 100.0 1.3E-28 2.7E-33 211.2 15.3 181 13-203 264-457 (624)
79 PRK12316 peptide synthase; Pro 100.0 1.2E-28 2.6E-33 244.7 17.1 196 5-203 4727-4934(5163)
80 PRK12476 putative fatty-acid-- 100.0 5.1E-29 1.1E-33 213.2 12.3 188 7-195 228-455 (612)
81 PRK12406 long-chain-fatty-acid 100.0 5.7E-28 1.2E-32 202.5 18.3 193 6-203 189-384 (509)
82 PRK13383 acyl-CoA synthetase; 100.0 5.7E-28 1.2E-32 202.9 18.3 189 7-203 211-401 (516)
83 PRK08276 long-chain-fatty-acid 100.0 4.4E-28 9.5E-33 202.8 17.4 188 11-203 185-374 (502)
84 PRK07470 acyl-CoA synthetase; 100.0 3.5E-28 7.7E-33 204.5 16.8 190 9-203 202-399 (528)
85 PRK12467 peptide synthase; Pro 100.0 2.2E-28 4.7E-33 239.7 17.1 196 5-203 1751-1959(3956)
86 PRK13391 acyl-CoA synthetase; 100.0 8.2E-28 1.8E-32 201.7 18.2 192 6-203 193-387 (511)
87 PRK08043 bifunctional acyl-[ac 100.0 4.7E-28 1E-32 210.6 17.0 188 6-203 399-596 (718)
88 TIGR03205 pimA dicarboxylate-- 100.0 1.2E-27 2.7E-32 201.9 19.0 189 12-203 237-426 (541)
89 PRK08751 putative long-chain f 100.0 1.2E-27 2.6E-32 202.7 18.3 188 13-203 254-442 (560)
90 PRK05691 peptide synthase; Val 100.0 4.4E-28 9.5E-33 239.0 17.6 195 5-203 1306-1510(4334)
91 PRK04813 D-alanine--poly(phosp 100.0 1.7E-27 3.6E-32 199.0 17.0 196 6-203 177-381 (503)
92 PRK07008 long-chain-fatty-acid 100.0 2.5E-27 5.5E-32 200.0 18.1 191 6-203 212-414 (539)
93 PRK08974 long-chain-fatty-acid 100.0 6.3E-27 1.4E-31 198.4 18.8 189 11-203 248-437 (560)
94 PRK05620 long-chain-fatty-acid 99.9 8.3E-27 1.8E-31 198.3 17.9 193 7-203 218-435 (576)
95 PRK05691 peptide synthase; Val 99.9 4E-27 8.7E-32 232.3 18.0 194 5-203 3902-4107(4334)
96 PRK07867 acyl-CoA synthetase; 99.9 2E-26 4.4E-31 194.2 18.4 189 5-203 185-386 (529)
97 PRK06018 putative acyl-CoA syn 99.9 6.8E-26 1.5E-30 191.4 18.0 191 6-203 213-415 (542)
98 PRK13388 acyl-CoA synthetase; 99.9 5.2E-26 1.1E-30 192.1 17.3 190 5-203 183-385 (540)
99 PLN02479 acetate-CoA ligase 99.9 7.6E-26 1.7E-30 192.1 17.4 193 7-203 230-435 (567)
100 PRK03584 acetoacetyl-CoA synth 99.9 9.7E-26 2.1E-30 194.4 17.7 193 6-203 298-503 (655)
101 PRK05850 acyl-CoA synthetase; 99.9 3.4E-26 7.3E-31 194.6 14.0 192 10-203 204-442 (578)
102 PRK06814 acylglycerophosphoeth 99.9 1.6E-25 3.4E-30 203.3 19.0 189 5-203 826-1015(1140)
103 PLN03102 acyl-activating enzym 99.9 1.5E-25 3.4E-30 190.7 17.0 190 8-203 222-425 (579)
104 TIGR01923 menE O-succinylbenzo 99.9 2.1E-25 4.4E-30 183.5 15.9 182 5-203 144-325 (436)
105 PRK09192 acyl-CoA synthetase; 99.9 9.3E-26 2E-30 192.0 13.9 195 7-203 212-444 (579)
106 PRK07868 acyl-CoA synthetase; 99.9 5.9E-25 1.3E-29 196.5 17.5 187 6-203 639-841 (994)
107 TIGR01217 ac_ac_CoA_syn acetoa 99.9 5.8E-25 1.3E-29 189.4 16.7 192 7-203 300-504 (652)
108 PLN03052 acetate--CoA ligase; 99.9 1.2E-24 2.6E-29 189.1 18.0 192 8-203 392-594 (728)
109 PRK07768 long-chain-fatty-acid 99.9 1.5E-24 3.2E-29 183.3 16.0 195 7-203 187-419 (545)
110 PRK08162 acyl-CoA synthetase; 99.9 3.8E-24 8.2E-29 180.8 17.6 193 7-203 217-421 (545)
111 PRK07445 O-succinylbenzoic aci 99.9 1.6E-24 3.6E-29 179.3 14.0 174 8-203 156-329 (452)
112 PRK08279 long-chain-acyl-CoA s 99.9 5.5E-24 1.2E-28 181.8 16.5 191 5-203 232-444 (600)
113 KOG1180 Acyl-CoA synthetase [L 99.9 3.8E-25 8.3E-30 178.4 8.4 191 9-203 275-520 (678)
114 PRK07798 acyl-CoA synthetase; 99.9 2.4E-23 5.3E-28 175.0 19.0 186 11-203 217-413 (533)
115 KOG1175 Acyl-CoA synthetase [L 99.9 5.4E-24 1.2E-28 177.3 13.9 199 4-203 272-480 (626)
116 PRK09029 O-succinylbenzoic aci 99.9 8.9E-23 1.9E-27 169.1 15.8 170 5-203 168-337 (458)
117 PRK07824 O-succinylbenzoic aci 99.9 1.4E-21 3E-26 157.2 16.9 162 12-203 73-239 (358)
118 KOG1179 Very long-chain acyl-C 99.9 2.7E-21 5.9E-26 156.7 15.0 197 5-203 275-493 (649)
119 TIGR02155 PA_CoA_ligase phenyl 99.9 6.3E-21 1.4E-25 156.7 14.8 164 8-177 114-281 (422)
120 PRK08308 acyl-CoA synthetase; 99.9 2.6E-20 5.6E-25 152.6 16.4 155 6-177 135-289 (414)
121 COG1020 EntF Non-ribosomal pep 99.8 1E-19 2.2E-24 156.7 16.2 196 6-203 400-601 (642)
122 TIGR03335 F390_ftsA coenzyme F 99.8 6.9E-18 1.5E-22 139.5 15.0 159 8-178 125-287 (445)
123 COG1541 PaaK Coenzyme F390 syn 99.6 6.3E-15 1.4E-19 118.7 13.1 162 8-176 129-293 (438)
124 TIGR02372 4_coum_CoA_lig 4-cou 99.6 6.2E-15 1.3E-19 119.7 12.6 134 7-155 130-265 (386)
125 PTZ00297 pantothenate kinase; 99.5 1.5E-13 3.3E-18 125.6 11.6 165 9-203 641-850 (1452)
126 TIGR02304 aden_form_hyp probab 98.9 1.1E-08 2.3E-13 84.2 8.5 81 49-132 175-255 (430)
127 TIGR03089 conserved hypothetic 98.8 1.4E-08 3E-13 76.9 5.7 57 6-63 171-227 (227)
128 KOG3628 Predicted AMP-binding 98.5 1.8E-06 3.9E-11 76.2 11.3 181 6-186 977-1197(1363)
129 KOG3628 Predicted AMP-binding 98.4 1.6E-06 3.6E-11 76.4 9.6 189 7-195 304-556 (1363)
130 PF04443 LuxE: Acyl-protein sy 97.8 0.00021 4.6E-09 57.8 10.0 135 35-179 161-313 (365)
131 KOG1178 Non-ribosomal peptide 97.1 0.0041 8.9E-08 56.3 9.4 125 8-132 232-372 (1032)
132 PLN02736 long-chain acyl-CoA s 86.3 6.9 0.00015 34.4 9.3 83 7-95 97-180 (651)
133 KOG1177 Long chain fatty acid 86.3 4.9 0.00011 34.0 7.6 88 7-96 96-198 (596)
134 PLN02387 long-chain-fatty-acid 84.6 9 0.00019 34.1 9.2 85 7-97 125-210 (696)
135 PTZ00342 acyl-CoA synthetase; 84.3 11 0.00024 34.0 9.6 77 14-96 131-208 (746)
136 PTZ00237 acetyl-CoA synthetase 81.2 6.3 0.00014 34.7 6.9 61 7-69 111-172 (647)
137 PLN03102 acyl-activating enzym 80.1 10 0.00022 32.8 7.8 63 8-72 59-122 (579)
138 PRK04319 acetyl-CoA synthetase 80.0 11 0.00024 32.4 7.9 67 7-75 92-159 (570)
139 TIGR02370 pyl_corrinoid methyl 79.8 17 0.00038 26.8 7.9 91 15-107 86-185 (197)
140 PLN02654 acetate-CoA ligase 79.5 8.2 0.00018 34.1 7.1 62 7-70 139-201 (666)
141 PRK07788 acyl-CoA synthetase; 79.2 13 0.00028 31.8 8.1 66 8-75 94-160 (549)
142 PLN02430 long-chain-fatty-acid 78.9 23 0.0005 31.3 9.7 84 8-96 96-180 (660)
143 TIGR01733 AA-adenyl-dom amino 78.4 10 0.00022 30.8 6.9 66 8-75 20-86 (408)
144 PRK02261 methylaspartate mutas 78.3 5.8 0.00013 27.5 4.7 47 23-69 15-62 (137)
145 PLN02614 long-chain acyl-CoA s 76.6 18 0.00039 32.1 8.3 68 7-76 98-166 (666)
146 PF00501 AMP-binding: AMP-bind 76.5 12 0.00026 30.4 6.9 59 7-67 40-99 (417)
147 TIGR02316 propion_prpE propion 76.1 12 0.00026 32.8 7.0 61 7-69 102-163 (628)
148 PRK13383 acyl-CoA synthetase; 75.9 16 0.00036 30.9 7.7 66 8-75 80-146 (516)
149 PRK05605 long-chain-fatty-acid 75.7 17 0.00037 31.2 7.9 67 7-75 76-143 (573)
150 PLN03052 acetate--CoA ligase; 75.7 12 0.00026 33.6 7.0 62 7-70 227-289 (728)
151 PRK08314 long-chain-fatty-acid 75.6 17 0.00037 30.9 7.8 66 8-75 56-122 (546)
152 TIGR01217 ac_ac_CoA_syn acetoa 75.3 12 0.00026 33.0 6.9 62 7-70 133-195 (652)
153 PRK06155 crotonobetaine/carnit 74.9 21 0.00046 30.5 8.2 67 8-76 66-133 (542)
154 cd02069 methionine_synthase_B1 74.8 27 0.00059 26.2 7.7 91 13-107 89-187 (213)
155 PLN02861 long-chain-fatty-acid 74.8 23 0.00049 31.3 8.5 68 7-76 96-164 (660)
156 PRK06839 acyl-CoA synthetase; 74.0 26 0.00056 29.3 8.4 66 8-75 48-114 (496)
157 PRK07514 malonyl-CoA synthase; 73.9 20 0.00044 30.0 7.8 66 7-74 47-113 (504)
158 PF03808 Glyco_tran_WecB: Glyc 73.9 5.3 0.00011 28.8 3.7 78 37-120 3-81 (172)
159 PRK08008 caiC putative crotono 73.6 24 0.00052 29.8 8.2 66 7-74 56-122 (517)
160 PRK08751 putative long-chain f 73.5 19 0.00041 30.8 7.6 66 7-74 70-136 (560)
161 PRK03584 acetoacetyl-CoA synth 73.4 15 0.00032 32.4 7.0 62 7-70 133-195 (655)
162 PLN02574 4-coumarate--CoA liga 73.3 19 0.00041 30.9 7.5 66 8-75 87-153 (560)
163 TIGR02188 Ac_CoA_lig_AcsA acet 72.9 14 0.0003 32.3 6.7 62 7-70 107-169 (625)
164 PRK10524 prpE propionyl-CoA sy 72.9 15 0.00033 32.1 6.9 61 7-69 103-164 (629)
165 PLN02246 4-coumarate--CoA liga 72.4 20 0.00043 30.6 7.4 66 7-74 69-135 (537)
166 PRK06187 long-chain-fatty-acid 72.0 27 0.00059 29.3 8.1 66 8-75 51-117 (521)
167 cd04910 ACT_AK-Ectoine_1 ACT d 71.7 11 0.00024 22.9 4.1 51 51-116 19-69 (71)
168 PRK08316 acyl-CoA synthetase; 71.1 25 0.00054 29.6 7.7 66 8-75 56-122 (523)
169 PRK00174 acetyl-CoA synthetase 70.8 18 0.00039 31.6 6.9 62 7-70 117-179 (637)
170 TIGR03098 ligase_PEP_1 acyl-Co 70.5 26 0.00056 29.5 7.7 66 8-75 45-111 (515)
171 PRK08162 acyl-CoA synthetase; 69.7 25 0.00055 29.9 7.5 66 8-75 63-129 (545)
172 PRK07656 long-chain-fatty-acid 69.6 30 0.00064 29.1 7.8 64 8-73 50-114 (513)
173 PRK09274 peptide synthase; Pro 69.3 21 0.00046 30.5 6.9 60 8-69 61-121 (552)
174 TIGR01923 menE O-succinylbenzo 69.3 24 0.00053 28.9 7.1 61 8-70 19-80 (436)
175 PLN02860 o-succinylbenzoate-Co 69.3 20 0.00044 30.8 6.8 61 8-70 52-113 (563)
176 PRK07059 Long-chain-fatty-acid 68.2 31 0.00067 29.5 7.7 65 8-74 68-133 (557)
177 PRK05677 long-chain-fatty-acid 67.8 30 0.00065 29.7 7.6 64 8-73 70-134 (562)
178 PRK07798 acyl-CoA synthetase; 67.7 40 0.00087 28.4 8.3 66 8-75 48-114 (533)
179 PRK06334 long chain fatty acid 67.4 23 0.00051 30.3 6.8 64 10-75 64-128 (539)
180 cd07100 ALDH_SSADH1_GabD1 Myco 66.8 72 0.0016 26.6 9.4 78 12-97 96-183 (429)
181 PRK12406 long-chain-fatty-acid 66.5 34 0.00073 28.9 7.5 67 7-75 30-97 (509)
182 cd02070 corrinoid_protein_B12- 66.4 50 0.0011 24.4 8.3 91 14-106 84-182 (201)
183 PTZ00216 acyl-CoA synthetase; 66.3 38 0.00082 30.2 8.1 68 7-76 140-208 (700)
184 PLN02479 acetate-CoA ligase 66.2 43 0.00092 28.8 8.2 63 8-72 65-128 (567)
185 cd07147 ALDH_F21_RNP123 Aldehy 65.7 80 0.0017 26.5 9.5 88 12-110 123-220 (452)
186 PRK07470 acyl-CoA synthetase; 65.6 46 0.001 28.2 8.2 64 8-73 52-116 (528)
187 PRK08279 long-chain-acyl-CoA s 65.0 47 0.001 28.8 8.3 67 7-75 81-148 (600)
188 PRK06087 short chain acyl-CoA 65.0 27 0.00059 29.8 6.7 60 7-68 68-128 (547)
189 PRK13382 acyl-CoA synthetase; 64.8 51 0.0011 28.1 8.4 64 8-73 88-152 (537)
190 PRK12492 long-chain-fatty-acid 64.7 27 0.00058 30.0 6.7 62 8-71 70-132 (562)
191 TIGR02262 benz_CoA_lig benzoat 64.5 53 0.0011 27.7 8.4 66 7-74 49-115 (508)
192 COG0365 Acs Acyl-coenzyme A sy 63.8 19 0.00042 31.0 5.5 66 7-75 60-126 (528)
193 COG1922 WecG Teichoic acid bio 63.3 33 0.00071 26.6 6.1 96 17-117 41-138 (253)
194 cd07085 ALDH_F6_MMSDH Methylma 62.9 95 0.0021 26.4 9.7 76 14-97 138-223 (478)
195 PRK05620 long-chain-fatty-acid 62.7 46 0.00099 28.7 7.8 66 8-75 59-125 (576)
196 PRK12583 acyl-CoA synthetase; 62.7 35 0.00076 29.1 7.0 61 8-70 65-126 (558)
197 PRK06018 putative acyl-CoA syn 62.6 34 0.00073 29.2 6.9 64 8-73 59-123 (542)
198 PRK11904 bifunctional proline 62.5 63 0.0014 30.6 8.8 87 11-108 683-780 (1038)
199 PRK08315 AMP-binding domain pr 62.4 34 0.00074 29.2 6.9 61 8-70 63-124 (559)
200 PRK05718 keto-hydroxyglutarate 62.4 64 0.0014 24.2 7.5 84 32-124 80-166 (212)
201 PRK07867 acyl-CoA synthetase; 61.4 57 0.0012 27.8 8.1 64 9-74 50-114 (529)
202 PRK08974 long-chain-fatty-acid 61.4 36 0.00079 29.1 6.9 63 8-72 69-132 (560)
203 PRK13252 betaine aldehyde dehy 61.1 1E+02 0.0023 26.2 9.6 75 14-96 144-228 (488)
204 KOG1176 Acyl-CoA synthetase [L 61.1 38 0.00081 29.4 6.8 68 8-77 67-135 (537)
205 PRK11809 putA trifunctional tr 60.9 68 0.0015 31.2 8.8 88 11-109 767-865 (1318)
206 PRK05852 acyl-CoA synthetase; 60.4 39 0.00085 28.7 6.9 59 7-67 62-121 (534)
207 PRK07786 long-chain-fatty-acid 60.4 56 0.0012 27.9 7.8 64 8-73 62-126 (542)
208 PRK07529 AMP-binding domain pr 60.4 35 0.00076 29.9 6.7 61 7-69 77-137 (632)
209 PRK06178 acyl-CoA synthetase; 60.1 54 0.0012 28.1 7.7 66 8-75 78-144 (567)
210 PRK13388 acyl-CoA synthetase; 60.1 58 0.0013 27.8 7.9 65 8-74 46-112 (540)
211 PRK05857 acyl-CoA synthetase; 60.0 39 0.00084 28.9 6.8 62 8-71 61-123 (540)
212 cd07131 ALDH_AldH-CAJ73105 Unc 59.9 1.1E+02 0.0023 26.0 9.5 76 14-97 137-223 (478)
213 PRK03640 O-succinylbenzoic aci 59.7 63 0.0014 26.9 7.9 64 8-73 47-111 (483)
214 PRK10411 DNA-binding transcrip 59.6 66 0.0014 24.5 7.3 88 35-130 90-184 (240)
215 cd02071 MM_CoA_mut_B12_BD meth 59.5 51 0.0011 22.1 7.3 84 23-110 11-101 (122)
216 cd07078 ALDH NAD(P)+ dependent 59.4 1E+02 0.0022 25.6 9.6 49 13-61 97-150 (432)
217 PRK06188 acyl-CoA synthetase; 59.4 45 0.00098 28.2 7.1 62 7-70 56-118 (524)
218 PRK07008 long-chain-fatty-acid 59.3 56 0.0012 27.9 7.7 64 8-73 59-123 (539)
219 cd07109 ALDH_AAS00426 Uncharac 59.2 1.1E+02 0.0023 25.8 9.7 75 14-96 119-204 (454)
220 PRK08276 long-chain-fatty-acid 58.6 58 0.0013 27.3 7.6 66 8-75 31-97 (502)
221 COG1021 EntE Peptide arylation 58.4 62 0.0013 27.2 7.1 87 6-101 71-166 (542)
222 cd07083 ALDH_P5CDH ALDH subfam 58.0 1.2E+02 0.0025 26.1 9.2 78 12-97 154-242 (500)
223 cd07125 ALDH_PutA-P5CDH Delta( 57.9 1.2E+02 0.0026 26.1 9.3 87 13-110 168-265 (518)
224 PLN02330 4-coumarate--CoA liga 57.4 44 0.00096 28.5 6.8 64 8-73 75-139 (546)
225 PLN02766 coniferyl-aldehyde de 57.2 1.3E+02 0.0027 25.9 9.6 77 12-96 158-245 (501)
226 PRK09192 acyl-CoA synthetase; 57.2 70 0.0015 27.6 8.0 66 8-75 69-142 (579)
227 PRK11905 bifunctional proline 57.0 85 0.0018 30.3 8.8 78 12-97 676-764 (1208)
228 cd07124 ALDH_PutA-P5CDH-RocA D 57.0 1.1E+02 0.0024 26.3 8.9 77 14-98 168-255 (512)
229 PF09664 DUF2399: Protein of u 57.0 67 0.0015 22.7 10.1 98 13-118 40-141 (152)
230 cd07102 ALDH_EDX86601 Uncharac 56.8 1.2E+02 0.0026 25.5 9.4 75 14-96 118-202 (452)
231 PF03321 GH3: GH3 auxin-respon 56.8 24 0.00052 30.5 4.9 91 86-183 266-371 (528)
232 TIGR03240 arg_catab_astD succi 56.5 1.3E+02 0.0027 25.7 9.8 77 12-96 132-218 (484)
233 PRK13295 cyclohexanecarboxylat 56.3 47 0.001 28.4 6.7 62 7-70 74-136 (547)
234 PRK09088 acyl-CoA synthetase; 56.3 55 0.0012 27.3 7.1 60 8-69 42-102 (488)
235 PRK12582 acyl-CoA synthetase; 56.2 41 0.0009 29.4 6.4 61 7-69 99-165 (624)
236 PRK06164 acyl-CoA synthetase; 56.0 48 0.001 28.2 6.7 62 7-70 54-116 (540)
237 PF06543 Lac_bphage_repr: Lact 56.0 10 0.00022 20.9 1.7 22 90-111 22-43 (49)
238 PF00455 DeoRC: DeoR C termina 55.9 71 0.0015 22.6 7.4 88 35-130 16-111 (161)
239 PRK05850 acyl-CoA synthetase; 55.5 55 0.0012 28.2 7.0 63 11-75 57-123 (578)
240 PRK12476 putative fatty-acid-- 55.0 84 0.0018 27.4 8.1 63 10-74 89-155 (612)
241 PRK06710 long-chain-fatty-acid 55.0 50 0.0011 28.3 6.7 63 8-72 69-132 (563)
242 cd07119 ALDH_BADH-GbsA Bacillu 55.0 1.2E+02 0.0027 25.7 8.9 76 14-97 136-222 (482)
243 cd07094 ALDH_F21_LactADH-like 54.5 1.3E+02 0.0028 25.3 9.6 87 14-111 125-222 (453)
244 PTZ00297 pantothenate kinase; 54.4 1.2E+02 0.0026 30.0 9.4 81 7-96 476-556 (1452)
245 PRK06060 acyl-CoA synthetase; 54.2 74 0.0016 28.3 7.8 63 8-72 50-113 (705)
246 cd07110 ALDH_F10_BADH Arabidop 53.8 1.3E+02 0.0029 25.2 9.5 76 14-97 122-208 (456)
247 TIGR01780 SSADH succinate-semi 53.4 1.4E+02 0.003 25.2 9.4 76 14-97 119-206 (448)
248 cd07113 ALDH_PADH_NahF Escheri 52.7 1.4E+02 0.0031 25.3 9.4 77 14-98 144-230 (477)
249 COG1184 GCD2 Translation initi 52.0 1.2E+02 0.0026 24.2 8.5 79 9-100 116-199 (301)
250 PLN02419 methylmalonate-semial 51.9 1.7E+02 0.0037 25.9 9.8 79 11-97 248-336 (604)
251 COG0318 CaiC Acyl-CoA syntheta 51.6 76 0.0017 27.2 7.2 60 9-70 59-119 (534)
252 TIGR01501 MthylAspMutase methy 51.6 67 0.0014 22.2 5.6 94 23-123 13-118 (134)
253 cd07148 ALDH_RL0313 Uncharacte 51.3 1.5E+02 0.0032 25.0 9.4 76 14-97 126-211 (455)
254 PRK03137 1-pyrroline-5-carboxy 51.3 1.6E+02 0.0035 25.3 9.3 77 14-98 173-260 (514)
255 cd06534 ALDH-SF NAD(P)+-depend 51.0 1.3E+02 0.0029 24.3 9.9 88 12-110 92-190 (367)
256 PRK08180 feruloyl-CoA synthase 51.0 66 0.0014 28.1 6.9 60 8-69 89-154 (614)
257 PRK09457 astD succinylglutamic 50.8 1.6E+02 0.0034 25.2 10.0 77 12-96 134-220 (487)
258 TIGR01237 D1pyr5carbox2 delta- 50.7 1.5E+02 0.0033 25.4 8.8 78 12-97 167-255 (511)
259 PRK13391 acyl-CoA synthetase; 50.4 1E+02 0.0022 25.9 7.8 65 8-74 44-109 (511)
260 cd07141 ALDH_F1AB_F2_RALDH1 NA 50.3 1.6E+02 0.0035 25.1 9.9 84 14-108 147-241 (481)
261 TIGR01722 MMSDH methylmalonic 50.3 1.6E+02 0.0034 25.0 9.7 76 14-97 138-223 (477)
262 PRK04813 D-alanine--poly(phosp 50.2 60 0.0013 27.1 6.3 60 8-69 47-107 (503)
263 TIGR03208 cyc_hxne_CoA_lg cycl 50.0 69 0.0015 27.2 6.8 61 8-70 73-134 (538)
264 COG5012 Predicted cobalamin bi 49.9 1.1E+02 0.0024 23.2 6.8 82 23-107 116-205 (227)
265 cd07111 ALDH_F16 Aldehyde dehy 49.6 1.7E+02 0.0036 25.0 9.4 78 13-98 148-235 (480)
266 TIGR03205 pimA dicarboxylate-- 48.6 82 0.0018 26.8 7.0 60 8-69 66-126 (541)
267 cd07105 ALDH_SaliADH Salicylal 48.6 1.6E+02 0.0035 24.6 9.1 77 12-96 98-188 (432)
268 cd07126 ALDH_F12_P5CDH Delta(1 48.4 1.8E+02 0.0038 25.0 10.2 89 12-111 142-240 (489)
269 PLN02278 succinic semialdehyde 48.3 1.8E+02 0.0038 25.0 9.0 77 12-96 160-247 (498)
270 PLN02467 betaine aldehyde dehy 48.2 1.8E+02 0.0039 25.0 10.0 76 13-96 152-238 (503)
271 cd07114 ALDH_DhaS Uncharacteri 48.1 1.6E+02 0.0035 24.7 8.5 85 14-109 121-216 (457)
272 PRK13390 acyl-CoA synthetase; 47.9 83 0.0018 26.4 6.9 62 7-70 43-105 (501)
273 cd07138 ALDH_CddD_SSP0762 Rhod 47.7 1.7E+02 0.0037 24.7 9.5 76 13-96 131-217 (466)
274 cd07090 ALDH_F9_TMBADH NAD+-de 47.4 1.7E+02 0.0037 24.6 9.3 75 14-96 118-202 (457)
275 PRK08633 2-acyl-glycerophospho 47.2 1.2E+02 0.0025 28.8 8.2 65 10-76 662-727 (1146)
276 TIGR02299 HpaE 5-carboxymethyl 47.2 1.8E+02 0.0039 24.8 9.4 76 14-97 137-223 (488)
277 TIGR02275 DHB_AMP_lig 2,3-dihy 47.0 78 0.0017 26.8 6.6 62 7-70 67-129 (527)
278 PRK09406 gabD1 succinic semial 47.0 1.8E+02 0.0038 24.6 9.0 79 12-98 123-211 (457)
279 COG1167 ARO8 Transcriptional r 46.9 53 0.0011 27.8 5.4 57 10-71 176-236 (459)
280 cd07097 ALDH_KGSADH-YcbD Bacil 46.9 1.8E+02 0.0039 24.7 8.9 75 14-96 137-222 (473)
281 PRK10090 aldehyde dehydrogenas 46.8 1.7E+02 0.0037 24.4 9.6 77 12-96 71-158 (409)
282 cd07139 ALDH_AldA-Rv0768 Mycob 46.7 1.8E+02 0.0039 24.6 9.8 76 14-97 139-224 (471)
283 PLN02247 indole-3-acetic acid- 46.6 1.4E+02 0.0029 26.5 7.8 41 86-126 292-333 (606)
284 PF08255 Leader_Trp: Trp-opero 45.9 5.7 0.00012 15.8 -0.2 10 193-202 4-13 (14)
285 cd07082 ALDH_F11_NP-GAPDH NADP 45.7 1.9E+02 0.004 24.5 9.8 87 14-111 143-240 (473)
286 PF00818 Ice_nucleation: Ice n 45.1 11 0.00023 15.7 0.5 9 119-127 1-9 (16)
287 cd07149 ALDH_y4uC Uncharacteri 45.0 1.9E+02 0.004 24.3 9.5 88 13-111 124-222 (453)
288 cd07095 ALDH_SGSD_AstD N-succi 44.7 1.9E+02 0.0041 24.2 9.8 78 12-97 97-184 (431)
289 cd07123 ALDH_F4-17_P5CDH Delta 44.6 2.1E+02 0.0045 24.7 9.5 76 14-97 172-257 (522)
290 cd07088 ALDH_LactADH-AldA Esch 44.5 1.9E+02 0.0042 24.4 9.5 47 14-60 135-186 (468)
291 PRK08308 acyl-CoA synthetase; 43.8 1.2E+02 0.0027 24.7 7.1 60 8-69 27-87 (414)
292 PLN02466 aldehyde dehydrogenas 43.6 2.2E+02 0.0048 24.8 9.6 77 13-97 196-283 (538)
293 PRK09029 O-succinylbenzoic aci 43.6 1.2E+02 0.0025 25.2 7.0 60 8-69 48-108 (458)
294 PF04915 DltD_N: DltD N-termin 43.0 14 0.0003 21.8 1.0 18 111-128 25-42 (62)
295 cd07092 ALDH_ABALDH-YdcW Esche 42.9 2E+02 0.0044 24.1 9.1 47 13-59 119-170 (450)
296 TIGR01804 BADH glycine betaine 42.6 2.1E+02 0.0045 24.2 9.1 75 14-96 135-220 (467)
297 PF11974 MG1: Alpha-2-macroglo 42.6 33 0.00071 22.1 2.8 35 142-176 22-59 (97)
298 PRK07787 acyl-CoA synthetase; 42.2 1E+02 0.0023 25.6 6.6 57 11-69 43-100 (471)
299 PF00171 Aldedh: Aldehyde dehy 42.0 1.3E+02 0.0029 25.3 7.1 85 15-110 129-224 (462)
300 PRK07769 long-chain-fatty-acid 42.0 1.9E+02 0.0041 25.3 8.3 62 10-73 76-141 (631)
301 TIGR01734 D-ala-DACP-lig D-ala 41.9 1E+02 0.0022 25.8 6.5 61 8-70 45-106 (502)
302 TIGR02082 metH 5-methyltetrahy 41.1 1.8E+02 0.0039 28.1 8.2 95 13-111 733-836 (1178)
303 cd07128 ALDH_MaoC-N N-terminal 40.9 2.1E+02 0.0045 24.7 8.1 78 14-98 146-231 (513)
304 cd07143 ALDH_AldA_AN0554 Asper 40.9 2.3E+02 0.005 24.2 9.3 77 14-98 146-233 (481)
305 cd07118 ALDH_SNDH Gluconobacte 40.7 2.2E+02 0.0048 24.0 8.5 77 12-96 119-206 (454)
306 cd07120 ALDH_PsfA-ACA09737 Pse 40.7 2.2E+02 0.0049 24.0 9.1 76 13-96 118-205 (455)
307 PRK08043 bifunctional acyl-[ac 40.5 1.1E+02 0.0025 27.3 6.8 62 10-73 252-314 (718)
308 KOG1256 Long-chain acyl-CoA sy 40.5 2.8E+02 0.0061 25.1 8.9 83 32-119 150-234 (691)
309 TIGR00696 wecB_tagA_cpsF bacte 40.4 38 0.00082 24.6 3.2 45 68-117 33-78 (177)
310 TIGR02278 PaaN-DH phenylacetic 40.4 2E+02 0.0043 25.8 8.1 78 14-98 146-231 (663)
311 cd07099 ALDH_DDALDH Methylomon 40.3 2.2E+02 0.0048 23.9 9.4 49 13-61 120-173 (453)
312 cd07142 ALDH_F2BC Arabidosis a 40.1 2.3E+02 0.0051 24.0 9.4 77 14-98 143-230 (476)
313 PRK11563 bifunctional aldehyde 40.0 2.1E+02 0.0046 25.6 8.3 77 14-97 150-234 (675)
314 TIGR01236 D1pyr5carbox1 delta- 39.9 2.5E+02 0.0055 24.4 9.5 75 14-97 172-257 (533)
315 cd07091 ALDH_F1-2_Ald2-like AL 39.8 2.3E+02 0.0051 24.0 9.4 75 15-97 144-229 (476)
316 cd07089 ALDH_CddD-AldA-like Rh 39.8 2.3E+02 0.005 23.9 9.6 75 15-97 126-211 (459)
317 cd07107 ALDH_PhdK-like Nocardi 39.4 2.3E+02 0.005 23.8 8.6 75 14-96 118-202 (456)
318 PRK11241 gabD succinate-semial 39.4 2.4E+02 0.0053 24.1 9.2 75 14-96 148-233 (482)
319 PLN02620 indole-3-acetic acid- 39.1 2.6E+02 0.0056 24.9 8.4 41 86-126 303-344 (612)
320 PRK07445 O-succinylbenzoic aci 38.6 1.4E+02 0.003 25.0 6.7 57 11-69 43-100 (452)
321 cd07077 ALDH-like NAD(P)+-depe 38.4 2.3E+02 0.0049 23.4 9.7 89 12-111 100-201 (397)
322 cd07144 ALDH_ALD2-YMR170C Sacc 38.3 2.5E+02 0.0054 23.9 9.2 75 14-96 146-231 (484)
323 TIGR03443 alpha_am_amid L-amin 38.3 1.1E+02 0.0024 29.8 6.7 59 8-68 290-349 (1389)
324 PRK09490 metH B12-dependent me 38.2 1.8E+02 0.004 28.2 7.8 94 14-111 753-855 (1229)
325 cd07145 ALDH_LactADH_F420-Bios 38.1 2.4E+02 0.0053 23.7 9.4 75 14-96 125-210 (456)
326 PRK13473 gamma-aminobutyraldeh 38.0 2.5E+02 0.0054 23.8 9.1 75 14-96 140-224 (475)
327 PRK06145 acyl-CoA synthetase; 37.7 1.6E+02 0.0035 24.6 7.1 62 8-71 47-109 (497)
328 KOG2451 Aldehyde dehydrogenase 37.6 1.7E+02 0.0036 24.5 6.5 48 14-61 161-213 (503)
329 PRK06814 acylglycerophosphoeth 36.8 1.9E+02 0.0041 27.5 7.9 62 9-72 678-740 (1140)
330 PRK10252 entF enterobactin syn 36.8 1.2E+02 0.0027 29.1 6.7 66 8-75 503-569 (1296)
331 PRK07868 acyl-CoA synthetase; 36.5 1.9E+02 0.0042 27.2 7.8 65 7-75 491-555 (994)
332 cd07140 ALDH_F1L_FTFDH 10-form 36.3 2.7E+02 0.006 23.8 9.5 78 12-97 147-235 (486)
333 TIGR03250 PhnAcAld_DH putative 36.0 2.7E+02 0.0059 23.6 10.3 85 14-109 141-236 (472)
334 PRK06552 keto-hydroxyglutarate 35.9 1.9E+02 0.0041 21.7 7.0 85 32-125 81-167 (213)
335 PRK13968 putative succinate se 35.9 2.7E+02 0.0059 23.6 9.3 78 12-97 126-213 (462)
336 PF02310 B12-binding: B12 bind 35.8 1.3E+02 0.0027 19.7 5.1 47 21-68 10-58 (121)
337 cd07112 ALDH_GABALDH-PuuC Esch 35.6 2.7E+02 0.0059 23.5 9.3 75 15-97 127-212 (462)
338 cd02072 Glm_B12_BD B12 binding 35.6 1.4E+02 0.003 20.5 5.1 46 24-69 12-58 (128)
339 cd07084 ALDH_KGSADH-like ALDH 35.5 2.7E+02 0.0059 23.4 9.9 88 13-111 101-199 (442)
340 cd07559 ALDH_ACDHII_AcoD-like 35.3 2.8E+02 0.0061 23.6 9.5 87 12-109 136-232 (480)
341 PRK07638 acyl-CoA synthetase; 35.3 1.7E+02 0.0037 24.4 6.8 56 12-69 49-105 (487)
342 KOG0025 Zn2+-binding dehydroge 34.8 2.4E+02 0.0052 22.7 9.4 101 5-109 153-255 (354)
343 PRK15398 aldehyde dehydrogenas 34.6 2.9E+02 0.0063 23.5 8.8 87 12-109 129-230 (465)
344 cd07150 ALDH_VaniDH_like Pseud 34.6 2.8E+02 0.006 23.3 9.3 75 14-96 121-206 (451)
345 TIGR03216 OH_muco_semi_DH 2-hy 33.3 3E+02 0.0066 23.4 8.6 77 14-98 141-229 (481)
346 cd07152 ALDH_BenzADH NAD-depen 33.2 2.9E+02 0.0063 23.1 9.9 76 14-97 112-198 (443)
347 cd07103 ALDH_F5_SSADH_GabD Mit 33.1 2.9E+02 0.0064 23.1 9.0 76 14-97 119-205 (451)
348 cd07093 ALDH_F8_HMSADH Human a 32.4 3E+02 0.0066 23.1 9.7 76 14-97 119-205 (455)
349 cd07086 ALDH_F7_AASADH-like NA 32.4 3.1E+02 0.0068 23.3 9.0 47 14-60 135-186 (478)
350 PRK10681 DNA-binding transcrip 31.8 2.4E+02 0.0051 21.7 8.2 88 34-129 88-183 (252)
351 cd06533 Glyco_transf_WecG_TagA 31.8 60 0.0013 23.3 3.1 30 88-117 46-76 (171)
352 PRK13509 transcriptional repre 31.7 1.4E+02 0.0031 22.9 5.3 83 35-125 90-178 (251)
353 PRK09847 gamma-glutamyl-gamma- 31.6 3.3E+02 0.0072 23.3 9.4 76 14-97 159-245 (494)
354 PRK10906 DNA-binding transcrip 31.4 2.4E+02 0.0053 21.7 8.1 88 35-130 88-183 (252)
355 KOG1180 Acyl-CoA synthetase [L 31.4 3.7E+02 0.0081 23.8 9.1 94 8-107 109-207 (678)
356 KOG2454 Betaine aldehyde dehyd 31.3 2.6E+02 0.0057 23.3 6.7 88 13-111 193-294 (583)
357 PF04016 DUF364: Domain of unk 31.1 31 0.00067 24.2 1.4 40 86-125 60-99 (147)
358 TIGR03374 ABALDH 1-pyrroline d 31.1 3.3E+02 0.0072 23.1 9.5 75 14-96 139-223 (472)
359 PRK07679 pyrroline-5-carboxyla 30.7 2.6E+02 0.0055 21.7 9.8 89 11-111 64-153 (279)
360 cd07106 ALDH_AldA-AAD23400 Str 30.6 3.3E+02 0.0071 22.9 9.5 47 13-59 115-166 (446)
361 cd07115 ALDH_HMSADH_HapE Pseud 30.5 3.3E+02 0.0071 22.9 9.6 76 14-97 119-205 (453)
362 PF06183 DinI: DinI-like famil 29.9 20 0.00044 21.3 0.3 26 99-124 9-34 (65)
363 TIGR01238 D1pyr5carbox3 delta- 29.9 3.6E+02 0.0078 23.2 9.4 78 11-96 159-247 (500)
364 PF01041 DegT_DnrJ_EryC1: DegT 29.5 95 0.0021 25.1 4.2 64 7-75 59-132 (363)
365 PRK06234 methionine gamma-lyas 27.8 2.2E+02 0.0047 23.6 6.0 15 96-110 163-177 (400)
366 TIGR02518 EutH_ACDH acetaldehy 27.7 3.9E+02 0.0085 22.9 10.2 86 14-110 106-206 (488)
367 KOG1175 Acyl-CoA synthetase [L 27.5 2.8E+02 0.006 24.8 6.8 63 7-71 115-178 (626)
368 PRK11903 aldehyde dehydrogenas 27.1 4.1E+02 0.0089 23.0 7.8 79 13-98 149-235 (521)
369 PRK09802 DNA-binding transcrip 27.0 3E+02 0.0066 21.4 7.4 87 36-130 104-198 (269)
370 TIGR00640 acid_CoA_mut_C methy 25.8 2.2E+02 0.0048 19.4 6.4 83 23-110 14-104 (132)
371 cd07104 ALDH_BenzADH-like ALDH 25.8 3.9E+02 0.0084 22.2 9.6 76 13-96 99-186 (431)
372 TIGR03089 conserved hypothetic 25.6 1.2E+02 0.0027 22.7 4.0 37 8-46 48-84 (227)
373 PRK10597 DNA damage-inducible 25.0 42 0.00091 21.0 1.1 27 98-124 20-48 (81)
374 PRK11121 nrdG anaerobic ribonu 24.3 1.3E+02 0.0028 21.2 3.6 10 91-100 69-78 (154)
375 cd07098 ALDH_F15-22 Aldehyde d 24.3 4.4E+02 0.0095 22.3 9.4 77 14-98 122-212 (465)
376 KOG2531 Sugar (pentulose and h 24.1 2.1E+02 0.0045 24.5 5.1 37 87-125 442-478 (545)
377 PF14617 CMS1: U3-containing 9 23.9 1.6E+02 0.0035 22.8 4.3 48 50-100 166-213 (252)
378 PRK13805 bifunctional acetalde 23.6 6E+02 0.013 23.7 9.4 86 14-110 110-210 (862)
379 PRK09188 serine/threonine prot 23.1 31 0.00066 28.3 0.3 8 196-203 207-214 (365)
380 PF07610 DUF1573: Protein of u 22.7 84 0.0018 16.8 1.9 15 161-175 30-44 (45)
381 PF10102 DUF2341: Domain of un 22.3 1.6E+02 0.0035 18.6 3.4 40 150-190 3-56 (89)
382 cd07117 ALDH_StaphAldA1 Unchar 22.0 5E+02 0.011 22.1 9.3 79 12-98 136-224 (475)
383 PLN02315 aldehyde dehydrogenas 21.9 5.2E+02 0.011 22.3 9.5 76 14-97 156-245 (508)
384 cd07127 ALDH_PAD-PaaZ Phenylac 21.7 5.5E+02 0.012 22.5 10.6 85 16-111 197-297 (549)
385 COG0686 Ald Alanine dehydrogen 21.6 4.5E+02 0.0098 21.5 7.3 91 36-132 188-284 (371)
386 cd07122 ALDH_F20_ACDH Coenzyme 20.9 5.1E+02 0.011 21.8 9.2 75 14-96 97-186 (436)
387 KOG0350 DEAD-box ATP-dependent 20.7 5.8E+02 0.013 22.3 8.0 93 14-108 216-316 (620)
388 cd07108 ALDH_MGR_2402 Magnetos 20.4 5.2E+02 0.011 21.7 9.1 46 14-59 119-169 (457)
No 1
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=262.91 Aligned_cols=195 Identities=42% Similarity=0.676 Sum_probs=179.0
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
.+.....|+.++.+|++|++|+...+.+.+..|.++++...+++..+++.+++|++|++.++|+++..|++.+.....++
T Consensus 219 ~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l 298 (537)
T KOG1176|consen 219 GWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDL 298 (537)
T ss_pred cccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccC
Confidence 35666789999999999999999966567777777777788999999999999999999999999999999987788999
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 166 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~ 166 (204)
+++|.+.+||+++++++.+++++++|...+.+.||+||+++..+.....+. .+.+++|++++++++++.+ ++|+.+++
T Consensus 299 ~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~ 376 (537)
T KOG1176|consen 299 SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGP 376 (537)
T ss_pred CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCC
Confidence 999999999999999999999999988999999999999987777655554 6899999999999988888 99999999
Q ss_pred CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++.|||++||+.++.|||++|++|+++|+.+||||||
T Consensus 377 ~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TG 413 (537)
T KOG1176|consen 377 NQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTG 413 (537)
T ss_pred CCceEEEEECcccchhhcCChHHHHhhcccCCccccC
Confidence 9999999999999999999999999999977999997
No 2
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-35 Score=248.91 Aligned_cols=197 Identities=37% Similarity=0.512 Sum_probs=174.6
Q ss_pred cccc--CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 6 QETA--GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 6 ~~~~--~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
..++ ++++|++++++|++|++|+...++.+++.|+++++.+ ++++..++..+.++++|++.++|+++..|++.+..
T Consensus 205 ~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~ 284 (534)
T COG0318 205 AALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK 284 (534)
T ss_pred HHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCcc
Confidence 4455 8899999999999999999997888899999999997 59999999999999999999999999999998877
Q ss_pred CCCCCcc-ceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCC
Q 028779 82 KKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT 160 (204)
Q Consensus 82 ~~~~l~~-lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~ 160 (204)
...++.+ +|.++.||+++++++++++++.|+..++.+.||+||++..++...........+++|+|+|+++++|+|+++
T Consensus 285 ~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~ 364 (534)
T COG0318 285 DDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDG 364 (534)
T ss_pred CccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCC
Confidence 7766666 999999999999999999999997678999999999998776654433113566779999999999999776
Q ss_pred CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+++++ |++|||+++||+++.|||++|+.|.++|..+||||||
T Consensus 365 ~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TG 406 (534)
T COG0318 365 GEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG 406 (534)
T ss_pred CccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeec
Confidence 66666 9999999999999999999999999988856999998
No 3
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=235.39 Aligned_cols=198 Identities=25% Similarity=0.305 Sum_probs=182.4
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 83 (204)
...+++.+++|+.++.|++|++|+...++++|..|+|++++ +.|++.+.+++|.++++|+++++|+|+..|++.+....
T Consensus 267 g~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~ 346 (596)
T KOG1177|consen 267 GARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQ 346 (596)
T ss_pred HHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhcc
Confidence 45577888899999999999999999899999999999996 67999999999999999999999999999999999999
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-CCCCCCccccCCCceEEEEeCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQK 162 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~v~d~~~~~ 162 (204)
.+++++|.++.+|+++|+++++.+.....=..+...||+||++...++...++. .....++|..+++.+..++| +.|.
T Consensus 347 ~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~ 425 (596)
T KOG1177|consen 347 VDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGS 425 (596)
T ss_pred CchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCC
Confidence 999999999999999999999999997644558899999999988777655543 55677999999999999999 9999
Q ss_pred CCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 163 PLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 163 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.++-|..|||++||++.|.|||+++++|+++...|.|++||
T Consensus 426 ~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TG 466 (596)
T KOG1177|consen 426 EVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTG 466 (596)
T ss_pred ccccCCCceEEEEechhheeecCCcccchhhcccccceecC
Confidence 99999999999999999999999999999999999999997
No 4
>PLN02574 4-coumarate--CoA ligase-like
Probab=100.00 E-value=1.2e-33 Score=239.34 Aligned_cols=192 Identities=34% Similarity=0.601 Sum_probs=171.4
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC-CCCCCccce
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-KKFDLSSLK 90 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-~~~~l~~lr 90 (204)
.+++++..+|++|++++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.... ...+++++|
T Consensus 243 ~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr 322 (560)
T PLN02574 243 SDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLK 322 (560)
T ss_pred CCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccce
Confidence 5789999999999999988778888999999999999999999999999999999999999999887543 345688999
Q ss_pred eeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcc
Q 028779 91 LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG 170 (204)
Q Consensus 91 ~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~G 170 (204)
.++++|+++++++++++.+.++++.+++.||+||++.+.+............++|+|+++++++|+|+++++++++|+.|
T Consensus 323 ~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~G 402 (560)
T PLN02574 323 QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCG 402 (560)
T ss_pred EEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCe
Confidence 99999999999999999999988999999999999876543222222245678999999999999998899999999999
Q ss_pred eEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 171 EIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 171 el~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
||+++|++++.|||++++.+.+.|..+||||||
T Consensus 403 ei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TG 435 (560)
T PLN02574 403 ELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTG 435 (560)
T ss_pred EEEEECcchhhhhcCChhHhhhhccCCCCcccc
Confidence 999999999999999999999999889999997
No 5
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=1.1e-33 Score=238.63 Aligned_cols=197 Identities=23% Similarity=0.286 Sum_probs=171.0
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..++++++|++++++|++|++++...++.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++.......
T Consensus 217 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 296 (539)
T PRK06334 217 KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQES 296 (539)
T ss_pred HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccc
Confidence 35678889999999999999999876788999999998875 57999999999999999999999999999887655556
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
++++||.+++||+++++++.+++++.++++.+++.||+||++.+++...... .....++|+|+++++++|+|+++++++
T Consensus 297 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~vG~p~~g~~v~i~d~~~~~~~ 375 (539)
T PRK06334 297 CLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS-PKHESCVGMPIRGMDVLIVSEETKVPV 375 (539)
T ss_pred ccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCC-CCCCCcCceecCCCEEEEEcCCCCccC
Confidence 7889999999999999999999999998899999999999987765543222 234567999999999999997788999
Q ss_pred CCCCcceEEEecCCcchhhcCCcccccccc-chhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSW-GFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~-~~~gw~~~~ 203 (204)
++|+.|||+++|++++.|||++++.+.... ..+||||||
T Consensus 376 ~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TG 415 (539)
T PRK06334 376 SSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415 (539)
T ss_pred CCCceEEEEEecCcccccccCCcccccceeeCCceeEECC
Confidence 999999999999999999999998764322 346899997
No 6
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=100.00 E-value=4.2e-34 Score=233.75 Aligned_cols=190 Identities=35% Similarity=0.483 Sum_probs=164.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCC---HHHHHHHHHhcCceEEEechHHHHHHHhCCCCC----CCCC
Q 028779 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KFDL 86 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----~~~l 86 (204)
|++++.+|++|.+++...++.++..|+++++.+..+ +..+++.++++++|++.++|+++..+++..+.+ ..++
T Consensus 197 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l 276 (417)
T PF00501_consen 197 DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDL 276 (417)
T ss_dssp TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTG
T ss_pred ceEEeeccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccccccccc
Confidence 699999999999999666999999999999998754 577899999999999999999999999843222 3578
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 166 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~ 166 (204)
++||.++++|+++++++.+++++.++.+++++.||+||++.++.............++|.|+|+++++|+|+++++++++
T Consensus 277 ~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~ 356 (417)
T PF00501_consen 277 SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPP 356 (417)
T ss_dssp TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBEST
T ss_pred ccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999997669999999999999987553222234677899999999999999777999999
Q ss_pred CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|+.|||+++||+++.||+++++.+++.|..+||||||
T Consensus 357 g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 393 (417)
T PF00501_consen 357 GEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTG 393 (417)
T ss_dssp TSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEE
T ss_pred cccccccccCCccceeeeccccccccccccccceecc
Confidence 9999999999999999999999999999855899997
No 7
>PLN02246 4-coumarate--CoA ligase
Probab=100.00 E-value=3.2e-32 Score=229.55 Aligned_cols=197 Identities=38% Similarity=0.588 Sum_probs=176.1
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
.++++++|++++.+|++|++++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.+.....++
T Consensus 218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~ 297 (537)
T PLN02246 218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDL 297 (537)
T ss_pred ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCc
Confidence 46788999999999999999998778889999999999999999999999999999999999999999988766555677
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCC---CCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~---~~~~~~~~~~G~p~~~~~v~v~d~~~~~~ 163 (204)
+++|.++++|+++++++.+++++.+++..+++.||+||++.+++.... .......+++|+|+++++++++|++++++
T Consensus 298 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~ 377 (537)
T PLN02246 298 SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGAS 377 (537)
T ss_pred cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCc
Confidence 899999999999999999999999988999999999999876543211 11123456899999999999999888999
Q ss_pred CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++.|+.|||+++|++++.|||++++.+++.+..+|||||+
T Consensus 378 ~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TG 417 (537)
T PLN02246 378 LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTG 417 (537)
T ss_pred CCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeec
Confidence 9999999999999999999999999999998888999997
No 8
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=100.00 E-value=1.6e-32 Score=226.56 Aligned_cols=191 Identities=26% Similarity=0.276 Sum_probs=170.8
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--C-CHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 82 (204)
..+.+.++|++.+..++.|+.|....++++|.+|+|+++.+. + ++++++++|+++++|.++.+|+.+++|++....+
T Consensus 206 ~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~ 285 (528)
T COG0365 206 FHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGE 285 (528)
T ss_pred HhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcc
Confidence 457788999999999999999999999999999999999853 2 4999999999999999999999999999987777
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK 162 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~ 162 (204)
+.++++||.+.+.|||++++.++++.+.+ ++++.+.||+||++.+.....+ ..+.++.|.|+||++++++| ++|+
T Consensus 286 ~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvd-d~g~ 360 (528)
T COG0365 286 PYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVD-DEGN 360 (528)
T ss_pred cccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC---CcCCCCCCCCCCCceeEEEC-CCCC
Confidence 88999999999999999999999999999 6999999999999955544433 24556669999999999999 5599
Q ss_pred CCCCCCcceEEEecC--CcchhhcCCccccccccchhhhcccc
Q 028779 163 PLPPNQLGEIWLRGP--NMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 163 ~~~~g~~Gel~v~g~--~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++++|+ |+|+++.+ +++++||+|++++.+++... ||+|+
T Consensus 361 ~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tG 401 (528)
T COG0365 361 PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTG 401 (528)
T ss_pred cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecC
Confidence 999999 99999986 99999999999999888733 88876
No 9
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.7e-32 Score=236.22 Aligned_cols=188 Identities=20% Similarity=0.263 Sum_probs=159.3
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC--------CCCC
Q 028779 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLVK 82 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~--------~~~~ 82 (204)
.+.|++++.+|++|+++... .+.+++.|+++++.+. ++..+++.|+++++|+++++|.++..+.+. +..+
T Consensus 345 ~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~ 422 (746)
T PTZ00342 345 YNPKTHLSYLPISHIYERVI-AYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLK 422 (746)
T ss_pred CCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHH
Confidence 35689999999999999976 6778999999998875 899999999999999999999999988652 1100
Q ss_pred C----------------------------------CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccccccc
Q 028779 83 K----------------------------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128 (204)
Q Consensus 83 ~----------------------------------~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~ 128 (204)
+ ....+||.+++||+++++++.+++++.+ ++.+++.||+||+++.
T Consensus 423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~ 501 (746)
T PTZ00342 423 RFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGP 501 (746)
T ss_pred HHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccce
Confidence 0 0025899999999999999999999888 7899999999999776
Q ss_pred ccccCCCCCCCCCCCccccC-CCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 129 ATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 129 ~~~~~~~~~~~~~~~~G~p~-~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.+.....+ ...+++|+|+ |+++++++|.++....+.+..|||++|||.++.|||++|++|+++|+.+||||||
T Consensus 502 ~~~~~~~~--~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TG 575 (746)
T PTZ00342 502 IFVQHADD--NNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTG 575 (746)
T ss_pred eeeccCCC--CCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCC
Confidence 65544332 4678999998 9999999986655555556679999999999999999999999999889999998
No 10
>PLN02614 long-chain acyl-CoA synthetase
Probab=100.00 E-value=2.6e-32 Score=235.12 Aligned_cols=190 Identities=24% Similarity=0.345 Sum_probs=156.2
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC-------
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV------- 81 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------- 81 (204)
.+.++|++++.+|++|+++... .+..+..|+++++.+ +++..+++.|+++++|+++++|+++..+.+....
T Consensus 265 ~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~ 342 (666)
T PLN02614 265 ALTVKDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGF 342 (666)
T ss_pred CCCCCcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCH
Confidence 5678999999999999999876 566788999998875 5999999999999999999999999987642100
Q ss_pred ------------------------CCC-------------CC-ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccc
Q 028779 82 ------------------------KKF-------------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123 (204)
Q Consensus 82 ------------------------~~~-------------~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t 123 (204)
... .+ ++||.+++||+++++.+ +++.+.++++.+++.||+|
T Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~T 421 (666)
T PLN02614 343 LKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLT 421 (666)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchH
Confidence 000 01 58999999999999875 6677777678999999999
Q ss_pred cccccccccCCCCCCCCCCCccccCCCceEEEEeC-C-CCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcc
Q 028779 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-D-TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMH 201 (204)
Q Consensus 124 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~-~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~ 201 (204)
|++..++.....+ ....+++|+|+|+++++|+|+ + .++++++|+.|||++|||+++.|||++|++|++.|. +||||
T Consensus 422 E~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~-dGw~~ 499 (666)
T PLN02614 422 ESCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLH 499 (666)
T ss_pred hhhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhc-cCCcc
Confidence 9876554433222 234679999999999999983 3 247889999999999999999999999999999997 89999
Q ss_pred cc
Q 028779 202 SF 203 (204)
Q Consensus 202 ~~ 203 (204)
||
T Consensus 500 TG 501 (666)
T PLN02614 500 TG 501 (666)
T ss_pred cc
Confidence 98
No 11
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=99.98 E-value=1.1e-31 Score=227.59 Aligned_cols=191 Identities=27% Similarity=0.339 Sum_probs=163.9
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK 83 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~ 83 (204)
..++++++|+++..+|++|++++.. ++.++..|+++++.+++++..+++.++++++|++.++|+++..|++.... ..
T Consensus 206 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~ 284 (563)
T PLN02860 206 AIVGYGEDDVYLHTAPLCHIGGLSS-ALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTW 284 (563)
T ss_pred hhcCCCCCCEEEEecCchhhccHHH-HHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhcc
Confidence 3567889999999999999999876 78999999999999999999999999999999999999999999875432 23
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---------------------CCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---------------------GSRNIG 142 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---------------------~~~~~~ 142 (204)
..+++||.+++||+++++++.+++++.|++.++++.||+||++.......... ......
T Consensus 285 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (563)
T PLN02860 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGV 364 (563)
T ss_pred ccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCc
Confidence 45779999999999999999999999998899999999999876543321111 011223
Q ss_pred CccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 143 ~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++|+|+|+++++++|++ +|+.|||+++|+.++.|||++++.+++.+..+||||||
T Consensus 365 ~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TG 419 (563)
T PLN02860 365 CVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTG 419 (563)
T ss_pred ccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchhccCCCeEEcc
Confidence 68999999999999833 68899999999999999999999999999889999997
No 12
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=99.98 E-value=2.7e-31 Score=224.44 Aligned_cols=194 Identities=21% Similarity=0.267 Sum_probs=171.8
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..+.........+
T Consensus 231 ~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~ 310 (547)
T PRK13295 231 ERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRP 310 (547)
T ss_pred HHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCC
Confidence 34677889999999999999998887889999999999999899999999999999999999999999998876555667
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
+++||.++++|+++++++.+++++.+ ++++++.||+||++.++.............++|+|+++++++|+| +++++++
T Consensus 311 ~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~ 388 (547)
T PRK13295 311 VSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLP 388 (547)
T ss_pred cccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCC
Confidence 88999999999999999999999998 889999999999987665443222223456889999999999999 7789999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.|+.|||+++|+.++.||+++++.+++. .+|||+|+
T Consensus 389 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TG 424 (547)
T PRK13295 389 AGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTG 424 (547)
T ss_pred CCCCCeEEEEcCcccccccCCccccccC--CCCCeecc
Confidence 9999999999999999999999988776 47899997
No 13
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=99.98 E-value=3.8e-32 Score=227.30 Aligned_cols=182 Identities=28% Similarity=0.364 Sum_probs=152.4
Q ss_pred ccccc-CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC-----
Q 028779 5 DQETA-GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH----- 78 (204)
Q Consensus 5 ~~~~~-~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~----- 78 (204)
...+. ++++|++++.+|+.|++..+......+..|+++. ...+++.+++.+++.++|.+.++|.+++.+-+.
T Consensus 224 ~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~--~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv 301 (613)
T COG1022 224 DEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVL--FKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKV 301 (613)
T ss_pred HhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEE--ecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHH
Confidence 34454 8899999999999999999864344444444444 445899999999999999999999998877431
Q ss_pred ---CCCC---------------------------------------CCCC-ccceeeeecCCCCCHHHHHHHHHhCCCCc
Q 028779 79 ---GLVK---------------------------------------KFDL-SSLKLVGSGAAPLGKELMEECAKNVPSAT 115 (204)
Q Consensus 79 ---~~~~---------------------------------------~~~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~ 115 (204)
+..+ +..+ .++|.+++||+++++++..+++.. +++
T Consensus 302 ~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~ 379 (613)
T COG1022 302 AKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIP 379 (613)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCC
Confidence 1000 0001 389999999999999999999988 799
Q ss_pred EEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccc
Q 028779 116 VIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG 195 (204)
Q Consensus 116 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~ 195 (204)
+.++||+||+++.++..++.. ...+++|.|+|+++++|+| + |||+||||.+|.|||++|++|.++|+
T Consensus 380 i~eGYGlTEts~~~~v~~~~~--~~~gtvG~p~p~~evKI~d-~----------GEilVRG~~Vm~GYyk~pe~Taeaf~ 446 (613)
T COG1022 380 ILEGYGLTETSAVVSVNPPDR--FVLGTVGKPLPGIEVKIAD-D----------GEILVRGPNVMKGYYKNPEATAEAFT 446 (613)
T ss_pred eEEEecccccccceEEccccC--cccCCcCCcCCCceEEEcc-C----------ceEEEecchhcchhcCChHHHhhhcc
Confidence 999999999999988876655 7788999999999999998 6 99999999999999999999999999
Q ss_pred hhhhcccc
Q 028779 196 FRKIMHSF 203 (204)
Q Consensus 196 ~~gw~~~~ 203 (204)
.|||||||
T Consensus 447 ~DGWf~TG 454 (613)
T COG1022 447 EDGWFRTG 454 (613)
T ss_pred ccCCcccC
Confidence 99999998
No 14
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.98 E-value=1.9e-31 Score=241.65 Aligned_cols=198 Identities=27% Similarity=0.343 Sum_probs=174.1
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..++.+++|++++.+|++|.+++...++.++..|+++++.+ .+++..+++.++++++|++.++|++++.+++.+...+.
T Consensus 816 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 895 (1146)
T PRK08633 816 DVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPL 895 (1146)
T ss_pred HhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcc
Confidence 45678899999999999999999887888999999999876 47999999999999999999999999999987666667
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC--------CCCCCCCccccCCCceEEEE
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--------GSRNIGSAGALAPGVEALIV 156 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~--------~~~~~~~~G~p~~~~~v~v~ 156 (204)
+++++|.+++||+++++++.+++++.+ ++++++.||+||++..++....+. ...+.+++|+|+|+++++|+
T Consensus 896 ~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~ 974 (1146)
T PRK08633 896 MFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIV 974 (1146)
T ss_pred cCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEE
Confidence 789999999999999999999999998 789999999999987665432211 11346789999999999999
Q ss_pred eCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccch---hhhccccC
Q 028779 157 SVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF---RKIMHSFI 204 (204)
Q Consensus 157 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~---~gw~~~~~ 204 (204)
|+++++++++|+.|||+++|++++.|||++++.|++.+.. +|||+||.
T Consensus 975 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD 1025 (1146)
T PRK08633 975 DPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGD 1025 (1146)
T ss_pred cCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCC
Confidence 9889999999999999999999999999999999988862 29999973
No 15
>PLN02654 acetate-CoA ligase
Probab=99.98 E-value=1.7e-31 Score=230.21 Aligned_cols=197 Identities=20% Similarity=0.226 Sum_probs=171.0
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~- 80 (204)
..++++++|++++..|++|+++....++.+|+.|+++++.++ +++..+++.|+++++|+++.+|++++.|++...
T Consensus 310 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 389 (666)
T PLN02654 310 YAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDE 389 (666)
T ss_pred HhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcc
Confidence 357889999999999999999988778899999999999863 489999999999999999999999999988653
Q ss_pred -CCCCCCccceeeeecCCCCCHHHHHHHHHhCCC--CcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEe
Q 028779 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 157 (204)
Q Consensus 81 -~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d 157 (204)
....++++||.++++|+++++++.+++.+.++. +++.+.||+||+++......+.......+++|.|+|+++++|+|
T Consensus 390 ~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d 469 (666)
T PLN02654 390 YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 469 (666)
T ss_pred ccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC
Confidence 234577899999999999999999999999853 68999999999987665443322235678899999999999999
Q ss_pred CCCCCCCCCCCcceEEEec--CCcchhhcCCccccccccc--hhhhcccc
Q 028779 158 VDTQKPLPPNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHSF 203 (204)
Q Consensus 158 ~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~gw~~~~ 203 (204)
++|++++.++.|||++++ |+++.|||++++++.+++. .+||||||
T Consensus 470 -~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG 518 (666)
T PLN02654 470 -EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSG 518 (666)
T ss_pred -CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeC
Confidence 889999989999999999 7899999999998887653 37999997
No 16
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.98 E-value=2.2e-31 Score=224.72 Aligned_cols=195 Identities=27% Similarity=0.434 Sum_probs=173.7
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++.+|++++.+|++|++++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.+.....+
T Consensus 224 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~ 303 (546)
T PRK08314 224 LWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERD 303 (546)
T ss_pred HhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccC
Confidence 35677899999999999999999887889999999999999999999999999999999999999999998876555667
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
++++|.++.||+++++++.+++.+.| +.++++.||+||++.......... ....++|+|+++++++++|++++++++
T Consensus 304 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~--~~~~~~G~~~~g~~~~i~d~~~~~~~~ 380 (546)
T PRK08314 304 LSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPDR--PKLQCLGIPTFGVDARVIDPETLEELP 380 (546)
T ss_pred chhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccccccceecCCCcC--CCCCccCcccCCeEEEEEeCCCCcCCC
Confidence 88999999999999999999999998 689999999999987765543322 345689999999999999988899999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccch---hhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGF---RKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~---~gw~~~~ 203 (204)
.|+.|||+++|++++.||+++++.+++.|.. ++||+|+
T Consensus 381 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG 421 (546)
T PRK08314 381 PGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG 421 (546)
T ss_pred CCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence 9999999999999999999999999888752 3599997
No 17
>PRK06145 acyl-CoA synthetase; Validated
Probab=99.98 E-value=4.3e-31 Score=220.57 Aligned_cols=195 Identities=28% Similarity=0.360 Sum_probs=174.5
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
.+++..+|+++..+|++|.+++....+.++..|+++++.+.+++..+++.++++++|.+.++|+++..+++.......++
T Consensus 184 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~ 263 (497)
T PRK06145 184 ALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDL 263 (497)
T ss_pred hhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcccccc
Confidence 45788899999999999999997766788999999999998999999999999999999999999999998766566677
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 166 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~ 166 (204)
+++|.++.||++++.++.+++.+.|++.++++.||+||++...+...........+++|+|+++++++++| ++++.+++
T Consensus 264 ~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~ 342 (497)
T PRK06145 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPP 342 (497)
T ss_pred ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCCCC
Confidence 89999999999999999999999998899999999999988655433322234567899999999999999 77899999
Q ss_pred CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|+.|||+++|++++.|||++++.+++.|. ++||+|+
T Consensus 343 ~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~-~~~~~TG 378 (497)
T PRK06145 343 NMKGEICMRGPKVTKGYWKDPEKTAEAFY-GDWFRSG 378 (497)
T ss_pred CCceEEEEECcchhhhhcCChHHHHHHHh-CCCeecc
Confidence 99999999999999999999999999987 8999997
No 18
>PRK08315 AMP-binding domain protein; Validated
Probab=99.98 E-value=3.4e-31 Score=224.15 Aligned_cols=198 Identities=25% Similarity=0.352 Sum_probs=175.2
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEE-cCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~-~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..++++++|+++..+|++|++++...++.++..|+++++ ...+++..+++.++++++|.++++|+++..++........
T Consensus 233 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~ 312 (559)
T PRK08315 233 EAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARF 312 (559)
T ss_pred HhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCC
Confidence 456788999999999999999998888999999999985 4568999999999999999999999999999887665666
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-CCCCCCccccCCCceEEEEeCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~v~d~~~~~~ 163 (204)
++++||.++++|++++.++.+++.+.++..++++.||+||++.++........ .....++|+|+|+++++++|++++++
T Consensus 313 ~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~ 392 (559)
T PRK08315 313 DLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGET 392 (559)
T ss_pred CchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCc
Confidence 78999999999999999999999999977779999999999876655433221 23467899999999999999777999
Q ss_pred CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++.|+.|||+++|++++.|||++++.+++.|..++||+||
T Consensus 393 ~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG 432 (559)
T PRK08315 393 VPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG 432 (559)
T ss_pred CCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEcc
Confidence 9999999999999999999999999999888778999997
No 19
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.98 E-value=5.1e-31 Score=219.91 Aligned_cols=194 Identities=26% Similarity=0.353 Sum_probs=172.2
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|++++.+++.......+
T Consensus 183 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 262 (496)
T PRK06839 183 FAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN 262 (496)
T ss_pred HHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCC
Confidence 34567889999999999999999887788999999999998899999999999999999999999999999887666677
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
++++|.++++|+++++++.+++++. ++++.+.||+||++..+............+++|+|+++++++|+| ++++.++
T Consensus 263 ~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~ 339 (496)
T PRK06839 263 LQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNKVE 339 (496)
T ss_pred CcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCCCC
Confidence 8899999999999999999999886 789999999999987654433333234567899999999999999 6677799
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.|+.|||+++|++++.|||++++.+...+. +|||+|+
T Consensus 340 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG 376 (496)
T PRK06839 340 VGEVGELLIRGPNVMKEYWNRPDATEETIQ-DGWLCTG 376 (496)
T ss_pred CCCceEEEEECCCcchhhcCChHHHHHHHc-CCCeeec
Confidence 999999999999999999999999988876 8999997
No 20
>PLN02736 long-chain acyl-CoA synthetase
Probab=99.97 E-value=5.9e-31 Score=226.52 Aligned_cols=193 Identities=23% Similarity=0.256 Sum_probs=159.5
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-----
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL----- 80 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----- 80 (204)
..+++.++|++++.+|++|+++... ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+.+...
T Consensus 255 ~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~ 332 (651)
T PLN02736 255 LSTKFYPSDVHISYLPLAHIYERVN-QIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKE 332 (651)
T ss_pred hccCCCCCCEEEEeCCHHHHHHHHH-HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhc
Confidence 3567788999999999999999986 7788999999988764 88999999999999999999999988754210
Q ss_pred ------------------------CCC------------CCC-ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccc
Q 028779 81 ------------------------VKK------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123 (204)
Q Consensus 81 ------------------------~~~------------~~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t 123 (204)
... ..+ +++|.+++||+++++++.+++++.+ ++++++.||+|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~T 411 (651)
T PLN02736 333 SGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMT 411 (651)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechH
Confidence 000 001 4899999999999999999999888 68899999999
Q ss_pred cccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC---CCCCCcceEEEecCCcchhhcCCccccccccchhhhc
Q 028779 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP---LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIM 200 (204)
Q Consensus 124 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~---~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~ 200 (204)
|+++..+...... ...+++|+|+|+++++|+|.++++. ..+++.|||+++||+++.|||++++.|++.|..+|||
T Consensus 412 E~~~~~~~~~~~~--~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~ 489 (651)
T PLN02736 412 ETSCVISGMDEGD--NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWL 489 (651)
T ss_pred HhchheeccCCCC--CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCe
Confidence 9987665443322 4567899999999999998544332 2344579999999999999999999999999889999
Q ss_pred ccc
Q 028779 201 HSF 203 (204)
Q Consensus 201 ~~~ 203 (204)
|||
T Consensus 490 ~TG 492 (651)
T PLN02736 490 HTG 492 (651)
T ss_pred ecc
Confidence 998
No 21
>PRK07788 acyl-CoA synthetase; Validated
Probab=99.97 E-value=8.1e-31 Score=221.59 Aligned_cols=190 Identities=23% Similarity=0.282 Sum_probs=165.0
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK 83 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~ 83 (204)
..++++++|+++..+|++|++++.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.... ..
T Consensus 241 ~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~ 319 (549)
T PRK07788 241 SRVPFRAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAK 319 (549)
T ss_pred hhCCCCcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCC
Confidence 3566788999999999999999977 67889999999999889999999999999999999999999999887543 45
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~ 163 (204)
.++++||.+++||+++++++.+++++.| +..+++.||+||++..+.... .+......++|+|+++++++++| +++++
T Consensus 320 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d-~~~~~ 396 (549)
T PRK07788 320 YDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILD-ENGNE 396 (549)
T ss_pred CCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEEC-CCcCC
Confidence 5678999999999999999999999998 578999999999886554432 22123457899999999999999 88999
Q ss_pred CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+++|+.|||+++|+.++.||+++++. .. .+|||+||
T Consensus 397 ~~~g~~Gel~v~g~~~~~gY~~~~~~---~~-~~g~~~TG 432 (549)
T PRK07788 397 VPRGVVGRIFVGNGFPFEGYTDGRDK---QI-IDGLLSSG 432 (549)
T ss_pred CCCCCeEEEEEeCCCccccccCCCcc---cc-cCCceecC
Confidence 99999999999999999999998875 22 27999997
No 22
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.5e-30 Score=217.92 Aligned_cols=197 Identities=29% Similarity=0.424 Sum_probs=176.1
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 279 (513)
T PRK07656 200 EYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED 279 (513)
T ss_pred HhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCC
Confidence 45678899999999999999999887899999999999998889999999999999999999999999999887666667
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-CCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
++++|.++++|+++++++++++.+.++...+++.||+||++++......... .....++|.|+++++++++| ++++++
T Consensus 280 ~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~ 358 (513)
T PRK07656 280 LSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEV 358 (513)
T ss_pred ccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCC
Confidence 8899999999999999999999999954489999999999887765543321 12267899999999999999 789999
Q ss_pred CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.|+.|||+++|+.++.||+++++.+...+..+|||+||
T Consensus 359 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tG 397 (513)
T PRK07656 359 PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTG 397 (513)
T ss_pred CCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceecc
Confidence 999999999999999999999999998888778999997
No 23
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=99.97 E-value=3.9e-31 Score=227.76 Aligned_cols=189 Identities=23% Similarity=0.305 Sum_probs=152.0
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC-----------
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH----------- 78 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~----------- 78 (204)
+.++|++++.+|++|+++... .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+.
T Consensus 263 ~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~ 340 (660)
T PLN02861 263 ATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGML 340 (660)
T ss_pred CCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHH
Confidence 467899999999999999876 556899999998874 6899999999999999999999999988641
Q ss_pred --------------------------CCCCCC-------CC-ccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccc
Q 028779 79 --------------------------GLVKKF-------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE 124 (204)
Q Consensus 79 --------------------------~~~~~~-------~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE 124 (204)
+..... .+ .++|.+++||+++++++. ++.+.++...+++.||+||
T Consensus 341 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE 419 (660)
T PLN02861 341 RKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTE 419 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhh
Confidence 000000 11 479999999999999975 4666665567999999999
Q ss_pred ccccccccCCCCCCCCCCCccccCCCceEEEEe-CCCC-CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhccc
Q 028779 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVS-VDTQ-KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS 202 (204)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~ 202 (204)
+++.++...... ....+++|+|+|+++++++| ++.| ..+++++.|||++|||+++.|||++|++|+++|. +|||||
T Consensus 420 ~~~~~~~~~~~~-~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~-dGw~~T 497 (660)
T PLN02861 420 SCGGCFTSIANV-FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI-DGWFHT 497 (660)
T ss_pred hhhceeeccccc-CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhh-ccCccc
Confidence 876554432222 23467999999999999998 3444 3455677899999999999999999999999997 899999
Q ss_pred c
Q 028779 203 F 203 (204)
Q Consensus 203 ~ 203 (204)
|
T Consensus 498 G 498 (660)
T PLN02861 498 G 498 (660)
T ss_pred C
Confidence 8
No 24
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=99.97 E-value=1.5e-30 Score=218.97 Aligned_cols=195 Identities=23% Similarity=0.311 Sum_probs=170.3
Q ss_pred ccccCCCCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..+.+.++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......
T Consensus 217 ~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 296 (527)
T TIGR02275 217 EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRY 296 (527)
T ss_pred hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCC
Confidence 4567788999999999999999875 477889999999998888999999999999999999999999999887666667
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC-CCceEEEEeCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKP 163 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~v~d~~~~~~ 163 (204)
+++++|.+++||+++++++.+++.+.+ ++++++.||+||++...... .........++|+|+ +++.++++| +++++
T Consensus 297 ~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~ 373 (527)
T TIGR02275 297 DLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRL-DDPAEIIFTTQGRPMSPDDEVRVVD-DHGNP 373 (527)
T ss_pred CccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCC-CCccccccccCCCCCCCCceEEEEC-CCCCC
Confidence 788999999999999999999999988 78999999999965433221 112223456899999 588999999 88999
Q ss_pred CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+++|+.|||+++|+.++.|||++++.+.+.|..+|||+||
T Consensus 374 ~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TG 413 (527)
T TIGR02275 374 VAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 413 (527)
T ss_pred CCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcC
Confidence 9999999999999999999999999999999889999997
No 25
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=99.97 E-value=1.4e-30 Score=221.05 Aligned_cols=194 Identities=29% Similarity=0.355 Sum_probs=170.0
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VK 82 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~ 82 (204)
..++++++|++++..|++|.+++...++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|++... ..
T Consensus 239 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 318 (570)
T PRK04319 239 YVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVK 318 (570)
T ss_pred HhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccc
Confidence 45678889999999999999998877899999999999875 6899999999999999999999999999987543 23
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK 162 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~ 162 (204)
..++++||.++++|+++++++.+++++.+ +.++++.||+||++......... .....+++|+|+|+++++|+| ++++
T Consensus 319 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d-~~~~ 395 (570)
T PRK04319 319 KYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVD-DQGN 395 (570)
T ss_pred cCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEEC-CCCC
Confidence 45678999999999999999999999988 68899999999998765443222 124567899999999999999 7788
Q ss_pred CCCCCCcceEEEec--CCcchhhcCCccccccccchhhhcccc
Q 028779 163 PLPPNQLGEIWLRG--PNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 163 ~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++++|+.|||+++| ++++.|||++++.+.+.|. +|||+||
T Consensus 396 ~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TG 437 (570)
T PRK04319 396 ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSG 437 (570)
T ss_pred CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeC
Confidence 89999999999997 8999999999999999998 8999997
No 26
>PRK08316 acyl-CoA synthetase; Validated
Probab=99.97 E-value=1.9e-30 Score=217.73 Aligned_cols=196 Identities=29% Similarity=0.357 Sum_probs=176.8
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|.+++...++.++..|+++++.+..++..+++.++++++|++.++|+++..+++.......+
T Consensus 205 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 284 (523)
T PRK08316 205 VAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRD 284 (523)
T ss_pred HHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCC
Confidence 44678899999999999999998776777899999999998889999999999999999999999999999887666777
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
++++|.+++||++++.++.+++++.+++.++++.||+||++.+.......+.....+++|+|+++++++|+| +++++++
T Consensus 285 ~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~ 363 (523)
T PRK08316 285 LSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVA 363 (523)
T ss_pred cccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCC
Confidence 889999999999999999999999998899999999999988776544433334567899999999999999 7799999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.|+.|||+++|+.++.||+++++.+++.|. +|||+||
T Consensus 364 ~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~-~~~~~TG 400 (523)
T PRK08316 364 PGEVGEIVHRSPQLMLGYWDDPEKTAEAFR-GGWFHSG 400 (523)
T ss_pred CCCcceEEEECCchhhhhcCCHHHHHHHhh-CCCeecc
Confidence 999999999999999999999999998887 8999997
No 27
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.97 E-value=1.5e-30 Score=223.15 Aligned_cols=197 Identities=27% Similarity=0.332 Sum_probs=169.7
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
..++++++|++++..|++|+.+....++.+|..|+++++.+. .++..+++.++++++|+++++|++++.|.+....
T Consensus 271 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 350 (625)
T TIGR02188 271 YVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDE 350 (625)
T ss_pred hccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence 346788999999999999999887668899999999999753 4899999999999999999999999999876432
Q ss_pred --CCCCCccceeeeecCCCCCHHHHHHHHHhCC--CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEe
Q 028779 82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 157 (204)
Q Consensus 82 --~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d 157 (204)
...++++||.++++|+++++++.+++.+.++ ++++++.||+||+++..+.........+.+++|+|+++++++|+|
T Consensus 351 ~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d 430 (625)
T TIGR02188 351 WVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD 430 (625)
T ss_pred ccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC
Confidence 3356789999999999999999999999985 378999999999987765443322234567899999999999999
Q ss_pred CCCCCCCC-CCCcceEEEec--CCcchhhcCCccccccccc--hhhhcccc
Q 028779 158 VDTQKPLP-PNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHSF 203 (204)
Q Consensus 158 ~~~~~~~~-~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~gw~~~~ 203 (204)
++|++++ +|+.|||++++ |+++.|||++++.+.+.+. .+|||+||
T Consensus 431 -~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG 480 (625)
T TIGR02188 431 -EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTG 480 (625)
T ss_pred -CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECC
Confidence 8899999 99999999999 6899999999998877654 47999997
No 28
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=99.97 E-value=3e-30 Score=218.03 Aligned_cols=192 Identities=31% Similarity=0.520 Sum_probs=167.7
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc--cc
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS--SL 89 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~--~l 89 (204)
..++++.++|++|.+++...++.++..|+++++.+++++..+++.++++++|.+.++|+++..+++.+.....++. ++
T Consensus 226 ~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l 305 (546)
T PLN02330 226 GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKL 305 (546)
T ss_pred CceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchhee
Confidence 3578999999999999887788899999999999999999999999999999999999999999886554444444 47
Q ss_pred eeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---CCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779 90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQKPLPP 166 (204)
Q Consensus 90 r~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~ 166 (204)
|.++++|+++++++.+++.+.|+++++++.||+||++.+........ ......++|+|+|+++++++|+++++++++
T Consensus 306 ~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~ 385 (546)
T PLN02330 306 QAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPK 385 (546)
T ss_pred eeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCC
Confidence 89999999999999999999999999999999999986654321111 113346899999999999999888999999
Q ss_pred CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|+.|||+++|+.++.|||++++.+.+.++.+|||+||
T Consensus 386 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TG 422 (546)
T PLN02330 386 NTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTG 422 (546)
T ss_pred CCceEEEEecchhhhhhccCccchhhhccCCCceecc
Confidence 9999999999999999999999999988889999997
No 29
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.97 E-value=3.2e-30 Score=217.45 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=168.5
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++.+|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.......+
T Consensus 229 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~ 308 (538)
T TIGR03208 229 ERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAP 308 (538)
T ss_pred hhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCC
Confidence 34567889999999999999998887889999999999998899999999999999999999999999888654434566
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
++++|.++++|+++++++.+++.+.+ ++++++.||+||++.+..............++|+|+++++++++| +++++++
T Consensus 309 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~ 386 (538)
T TIGR03208 309 VPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLS 386 (538)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCc
Confidence 78999999999999999999999988 689999999999987765543222222345789999999999999 7889999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+|+.|||+++|+.++.|||++++.+. +..+|||+||
T Consensus 387 ~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TG 422 (538)
T TIGR03208 387 QGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTG 422 (538)
T ss_pred CCCCcEEEEecCcccccccCCccccc--ccCCCceecc
Confidence 99999999999999999999998775 3458999997
No 30
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.97 E-value=2.7e-30 Score=216.04 Aligned_cols=193 Identities=27% Similarity=0.406 Sum_probs=172.3
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|..++...++.++..|+++++.+..++..+++.+ +++|.+..+|+++..+++.+......
T Consensus 190 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~ 267 (504)
T PRK07514 190 DYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREA 267 (504)
T ss_pred HHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCccc
Confidence 4567889999999999999999988788999999999999989999999999 47999999999999998876666667
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
++++|.++.||+++++++.+++.+.+ +.++++.||+||++....... .......++|.|+++++++++||+++++++
T Consensus 268 ~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~ 344 (504)
T PRK07514 268 AAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSNPY--DGERRAGTVGFPLPGVSLRVTDPETGAELP 344 (504)
T ss_pred ccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccCCc--cccccCcccccCCCCcEEEEEECCCCCCCC
Confidence 88999999999999999999999988 678999999999986654322 222345789999999999999999999999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.|+.|||+++|++++.|||++++.+++.|..+|||+||
T Consensus 345 ~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 382 (504)
T PRK07514 345 PGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITG 382 (504)
T ss_pred CCCceEEEEecCCccccccCCchhhhhhcccCCCeeec
Confidence 99999999999999999999999999999888999997
No 31
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.97 E-value=3.7e-30 Score=221.14 Aligned_cols=197 Identities=29% Similarity=0.379 Sum_probs=168.9
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
..++++++|++++.+|++|+.+....++.+|..|+++++.+. +++..+++.|+++++|++.++|++++.|++....
T Consensus 280 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 359 (637)
T PRK00174 280 YVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDE 359 (637)
T ss_pred hccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCc
Confidence 346788899999999999999987778899999999999753 4899999999999999999999999999876432
Q ss_pred --CCCCCccceeeeecCCCCCHHHHHHHHHhCCC--CcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEe
Q 028779 82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 157 (204)
Q Consensus 82 --~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d 157 (204)
...++++||.++++|+++++++.+++.+.++. +++++.||+||++...+...........+++|+|+++++++|+|
T Consensus 360 ~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d 439 (637)
T PRK00174 360 HPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD 439 (637)
T ss_pred ccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC
Confidence 33567899999999999999999999998853 78999999999987665433322234567899999999999999
Q ss_pred CCCCCCCCCCCcceEEEec--CCcchhhcCCccccccccc--hhhhcccc
Q 028779 158 VDTQKPLPPNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHSF 203 (204)
Q Consensus 158 ~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~gw~~~~ 203 (204)
+++++++.|+.|||+++| |+++.|||++++.+.+.+. .+|||+||
T Consensus 440 -~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG 488 (637)
T PRK00174 440 -EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG 488 (637)
T ss_pred -CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC
Confidence 889999999999999999 6999999999998877653 47999997
No 32
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=217.09 Aligned_cols=187 Identities=28% Similarity=0.340 Sum_probs=162.0
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC-------C-----
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH-------G----- 79 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-------~----- 79 (204)
.+|++++.+||.|++.-+. ....++.|+++.+..+ |+..+.+.|++.++|.+.++|-.++.+-+. .
T Consensus 301 ~~dv~lSyLPLAHi~er~~-~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr 378 (691)
T KOG1256|consen 301 GDDVYLSYLPLAHIFERVV-ELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKR 378 (691)
T ss_pred cCceEEEeCcHHHHHHHHH-HHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHH
Confidence 3699999999999999998 5566789999999874 999999999999999999999988776421 0
Q ss_pred --------------CCCC-----CCC--------------ccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccccc
Q 028779 80 --------------LVKK-----FDL--------------SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126 (204)
Q Consensus 80 --------------~~~~-----~~l--------------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~ 126 (204)
..+. ..+ .++|.+++|++|+++++.+.++..+ +++++++||+||++
T Consensus 379 ~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts 457 (691)
T KOG1256|consen 379 KLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETS 457 (691)
T ss_pred HHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccC
Confidence 0000 100 4899999999999999999999998 89999999999999
Q ss_pred ccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.++...+++ ...+++|.|+|+++++++|++..+.-+.|..|||++||++++.|||++|++|+++++.|||||||
T Consensus 458 ~g~~~~~~~d--~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTG 532 (691)
T KOG1256|consen 458 AGTTLTLPGD--NVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTG 532 (691)
T ss_pred CceEeccCCC--CCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccc
Confidence 7766665555 37889999999999999998888888888899999999999999999999999999999999998
No 33
>PRK07529 AMP-binding domain protein; Validated
Probab=99.97 E-value=5.4e-30 Score=219.89 Aligned_cols=193 Identities=26% Similarity=0.430 Sum_probs=164.3
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--C-C---HHHHHHHHHhcCceEEEechHHHHHHHhCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-D---LEMFLRAIEKHRVTHIWVVPPLILALAKHG 79 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~-~---~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 79 (204)
..++++++|++++.+|++|++++...++.++..|+++++.+. + + ...+++.++++++|++.++|+++..|++.+
T Consensus 247 ~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 326 (632)
T PRK07529 247 LLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP 326 (632)
T ss_pred HhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc
Confidence 345678999999999999999998878999999999999863 2 2 368899999999999999999999998875
Q ss_pred CCCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEE--e
Q 028779 80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV--S 157 (204)
Q Consensus 80 ~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~--d 157 (204)
. ...++++||.+++||+++++++.+++++.+ ++++++.||+||++..+...... .....+++|+|+|+++++++ |
T Consensus 327 ~-~~~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d 403 (632)
T PRK07529 327 V-DGHDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILD 403 (632)
T ss_pred c-cCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCcc-ccccCCCcccccCCceEEEEEcC
Confidence 3 234678999999999999999999999988 79999999999998776654332 23467899999999999985 5
Q ss_pred CCCC---CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 158 VDTQ---KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 158 ~~~~---~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+++ +++++|+.|||+++||+++.||++++ .+.+.|..+||||||
T Consensus 404 -~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TG 450 (632)
T PRK07529 404 -DAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTG 450 (632)
T ss_pred -CCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcC
Confidence 556 78999999999999999999999865 555666568999997
No 34
>PRK12583 acyl-CoA synthetase; Provisional
Probab=99.97 E-value=5.2e-30 Score=216.85 Aligned_cols=197 Identities=27% Similarity=0.394 Sum_probs=173.7
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..++++++|++++.+|++|.++....++.++..|+++++. ..+++..+++.++++++|+++++|+++..+++.......
T Consensus 235 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~ 314 (558)
T PRK12583 235 ESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNF 314 (558)
T ss_pred HHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCC
Confidence 4467888999999999999999988889999999999975 457999999999999999999999999988877655566
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC-CCCCCCCccccCCCceEEEEeCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~v~d~~~~~~ 163 (204)
+++++|.++++|+++++++.+++.+.++...+++.||+||++.+........ ......++|+|+++++++++|++ +++
T Consensus 315 ~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~ 393 (558)
T PRK12583 315 DLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GAT 393 (558)
T ss_pred CchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCC
Confidence 7889999999999999999999999997788999999999998776543221 12346789999999999999955 899
Q ss_pred CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++.|+.|||+++|+.++.||+++++.+.+.|..+|||+|+
T Consensus 394 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG 433 (558)
T PRK12583 394 VPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTG 433 (558)
T ss_pred CCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeecc
Confidence 9999999999999999999999999998888678999997
No 35
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.97 E-value=6.6e-30 Score=213.09 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=166.2
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|+++...|++|..++.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+... .
T Consensus 177 ~~~~~~~~d~~~~~~~l~~~~~l~~-~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~- 251 (487)
T PRK07638 177 HDFHMKREDSVLIAGTLVHSLFLYG-AISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V- 251 (487)
T ss_pred HhcCcCCCCEEEEeecchHHHHHHH-HHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-
Confidence 4567889999999999999987765 7889999999999999999999999999999999999999999987632 2
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
..+.+.++++|++++.++.+++.+.+++.++++.||+||++.++.... ........++|+|+++++++|+| ++|++++
T Consensus 252 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~ 329 (487)
T PRK07638 252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-EESERRPNSVGRPFHNVQVRICN-EAGEEVQ 329 (487)
T ss_pred CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-cccCCCCCCCCcccCCcEEEEEC-CCCCCCC
Confidence 345667788999999999999999999999999999999987765543 22234567899999999999999 8899999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+|+.|||+++|+.++.|||++++.+.+.+. +|||+||
T Consensus 330 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG 366 (487)
T PRK07638 330 KGEIGTVYVKSPQFFMGYIIGGVLARELNA-DGWMTVR 366 (487)
T ss_pred CCCCeEEEEecccceeeecCCHHHHhhhcc-CCcEecC
Confidence 999999999999999999999988776555 8999997
No 36
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=99.97 E-value=5.4e-30 Score=216.42 Aligned_cols=195 Identities=26% Similarity=0.308 Sum_probs=170.7
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|.+++...++.+++.|+++++.+.+++..+++.++++++++++.+|+++..+++.......+
T Consensus 221 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~ 300 (547)
T PRK06087 221 ARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPAD 300 (547)
T ss_pred HhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCC
Confidence 34577899999999999999998877889999999999999999999999999999999999888888887765545567
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
++++|.+++||+++++++.+.+.+. ++++++.||+||++.++.............++|+|+++++++++| +++++++
T Consensus 301 ~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~ 377 (547)
T PRK06087 301 LSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLP 377 (547)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCc
Confidence 7899999999999999999998775 789999999999987765443222123345789999999999999 8899999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+|+.|||+++|++++.|||++++.+...+..+|||+|+
T Consensus 378 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TG 415 (547)
T PRK06087 378 PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415 (547)
T ss_pred CCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcC
Confidence 99999999999999999999999999988888999997
No 37
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=7.9e-30 Score=216.18 Aligned_cols=187 Identities=23% Similarity=0.398 Sum_probs=164.9
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~ 91 (204)
.+++++.+|++|.+++...++.++..|+++++.+ ..++..+++.++++++|+++++|+++..+++.......+++++|.
T Consensus 251 ~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~ 330 (562)
T PRK05677 251 CEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKL 330 (562)
T ss_pred ccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceE
Confidence 4788999999999998876788888898877765 578999999999999999999999999998865544556779999
Q ss_pred eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779 92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171 (204)
Q Consensus 92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge 171 (204)
+++||+++++++.+++++.+ ++++++.||+||++.+....... ....+++|+|+++++++++| ++++++++|+.||
T Consensus 331 v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Ge 406 (562)
T PRK05677 331 TLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGE 406 (562)
T ss_pred EEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeE
Confidence 99999999999999999987 78999999999998776554332 23457899999999999999 6789999999999
Q ss_pred EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|+++|++++.|||++++.|++.|..+|||+||
T Consensus 407 l~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG 438 (562)
T PRK05677 407 LCVKGPQVMKGYWQRPEATDEILDSDGWLKTG 438 (562)
T ss_pred EEEecCccchhhcCCchhhhhccCCCCccccc
Confidence 99999999999999999999999889999997
No 38
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.97 E-value=7.2e-30 Score=212.45 Aligned_cols=191 Identities=26% Similarity=0.349 Sum_probs=166.4
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|++++.. ++.++..|+++++.+..++..+++.++++++|++.++|+++..|++..... ..
T Consensus 175 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~ 252 (483)
T PRK03640 175 LNLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TY 252 (483)
T ss_pred HhcCCCcCcEEEEecCHHHHHHHHH-HHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-cc
Confidence 3467889999999999999999887 788999999999999999999999999999999999999999998654322 33
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
..++|.++++|+++++.+.+.+++. ++++++.||+||++...............+++|+|++++++++.| +. ++++
T Consensus 253 ~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~~-~~~~ 328 (483)
T PRK03640 253 PSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-DG-VVVP 328 (483)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEec-CC-CcCC
Confidence 4699999999999999999998875 789999999999876544433333345668899999999999998 43 7899
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+|+.|||+++|+.++.|||++++.+.+.|. +|||+|+
T Consensus 329 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~~~~~tG 365 (483)
T PRK03640 329 PFEEGEIVVKGPNVTKGYLNREDATRETFQ-DGWFKTG 365 (483)
T ss_pred CCCceEEEEECcchhhhhcCCHHHHHHHHh-cCCeecc
Confidence 999999999999999999999999988887 8999997
No 39
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.97 E-value=3.4e-30 Score=221.55 Aligned_cols=192 Identities=21% Similarity=0.232 Sum_probs=162.8
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--CC----HHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FD----LEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~- 80 (204)
+....+|++++..|++|+.+... ++.+|..|+++++.++ +. +..+++.++++++|++.++|++++.|++...
T Consensus 291 ~~~~~~d~~~~~~~~~w~~~~~~-~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 369 (647)
T PTZ00237 291 IEKDIPTVVFSHSSIGWVSFHGF-LYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE 369 (647)
T ss_pred cCCCCCcEEEEcCCCceEeeHHH-HHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcc
Confidence 45677899999999999976654 8899999999998764 22 7899999999999999999999999987532
Q ss_pred ----CCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEE
Q 028779 81 ----VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 156 (204)
Q Consensus 81 ----~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~ 156 (204)
....++++||.++++|+++++++.+++++.+ ++++++.||+||++........ ......+++|+|+|+++++|+
T Consensus 370 ~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i~ 447 (647)
T PTZ00237 370 ATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSIL 447 (647)
T ss_pred ccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEEE
Confidence 2345788999999999999999999999988 6899999999999866543322 122344789999999999999
Q ss_pred eCCCCCCCCCCCcceEEEecC---CcchhhcCCccccccccc-hhhhcccc
Q 028779 157 SVDTQKPLPPNQLGEIWLRGP---NMMRGIMLIASIILSSWG-FRKIMHSF 203 (204)
Q Consensus 157 d~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~-~~gw~~~~ 203 (204)
| ++|++++.|+.|||++++| +++.|||++++.+.+.|. .+||||||
T Consensus 448 d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TG 497 (647)
T PTZ00237 448 S-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSG 497 (647)
T ss_pred C-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECC
Confidence 9 7899999999999999986 789999999999988775 37999997
No 40
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=1.5e-29 Score=213.61 Aligned_cols=192 Identities=27% Similarity=0.409 Sum_probs=168.0
Q ss_pred ccC-CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 8 TAG-ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 8 ~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
+++ .++|++++.+|++|++++.. ++.++..|+++++.+ .+++..+++.++++++|.++++|+++..+++.......
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~ 288 (542)
T PRK07786 210 NGADINSDVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR 288 (542)
T ss_pred cCCCCCCceEEEecchHHHHHHHH-HHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc
Confidence 344 57899999999999999866 888999999999865 57999999999999999999999999999876543333
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
+ .++|.+++||+++++++++++.+.|++.++++.||+||++.+..............++|+|++++.++|+| ++++++
T Consensus 289 ~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~ 366 (542)
T PRK07786 289 D-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDV 366 (542)
T ss_pred C-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCC
Confidence 3 37999999999999999999999999999999999999987765543333334567899999999999999 788999
Q ss_pred CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++|+.|||+++|+.+++||+++++.+.+.|. +|||+|+
T Consensus 367 ~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~-~~~~~TG 404 (542)
T PRK07786 367 PVGEVGEIVYRAPTLMSGYWNNPEATAEAFA-GGWFHSG 404 (542)
T ss_pred cCCCceEEEEEChhhhhhhcCCHHHHHHHhh-CCccccc
Confidence 9999999999999999999999999999887 8999997
No 41
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.97 E-value=1.1e-29 Score=211.02 Aligned_cols=193 Identities=24% Similarity=0.345 Sum_probs=168.2
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
...++++++|++++.+|++|++++...++.++..|+++++.+.+++..+++.++ +++|++.++|+++..+.+.... ..
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~ 238 (471)
T PRK07787 161 AEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-AR 238 (471)
T ss_pred HHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-cc
Confidence 345678889999999999999999988999999999999998899999999999 9999999999999999875432 34
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
.++++|.++.||+++++++.+++++.+ +.++++.||+||++........ ......++|+|+++++++|+| ++++++
T Consensus 239 ~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~g~~~~i~d-~~~~~~ 314 (471)
T PRK07787 239 ALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRAD--GERRPGWVGLPLAGVETRLVD-EDGGPV 314 (471)
T ss_pred cccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCCC--CcccCCcccccCCCcEEEEEC-CCCCCC
Confidence 578999999999999999999999988 6899999999999865443322 223457899999999999999 668888
Q ss_pred C-CCC-cceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 P-PNQ-LGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~-~g~-~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+ .|+ .|||+++|+.++.|||++++.+++.|..+||||||
T Consensus 315 ~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TG 355 (471)
T PRK07787 315 PHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG 355 (471)
T ss_pred CCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecC
Confidence 6 344 89999999999999999999999999888999997
No 42
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=7.3e-31 Score=204.19 Aligned_cols=198 Identities=25% Similarity=0.323 Sum_probs=178.3
Q ss_pred cccccccCCCCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 3 TMDQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 3 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
+..+..+++.++++++.+|..|-+.+.. ..+..++.|+++|+.+..+|.....+|++++||+.-++|.....+++..+.
T Consensus 220 aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~ 299 (542)
T COG1021 220 ASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW 299 (542)
T ss_pred ehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc
Confidence 4566788999999999999999988776 788999999999999999999999999999999999999999999999888
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC-CCceEEEEeCCC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT 160 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~v~d~~~ 160 (204)
...+++|||.+-+||..+++.+.+++...+ ++.+-+.|||.|--.. ....++....-..+.|+|+ |+=+++|+| ++
T Consensus 300 ~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvn-yTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~d 376 (542)
T COG1021 300 ERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVN-YTRLDDPPEIIIHTQGRPLSPDDEVRVVD-AD 376 (542)
T ss_pred ccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhc-ccccCCchHheeecCCCcCCCcceeEEec-CC
Confidence 999999999999999999999999999999 8999999999995333 3222333234456899997 778899999 99
Q ss_pred CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|++|++||+|+|..|||..++|||+.|+.+.++|+.+|+++||
T Consensus 377 g~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsG 419 (542)
T COG1021 377 GNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSG 419 (542)
T ss_pred CCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecC
Confidence 9999999999999999999999999999999999999999997
No 43
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.97 E-value=1.2e-29 Score=217.62 Aligned_cols=197 Identities=21% Similarity=0.227 Sum_probs=166.1
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~- 80 (204)
..++++++|++++.+|++|+.++...++++|+.|+++++.+. +++..+++.++++++|+++.+|++++.|.+...
T Consensus 267 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 346 (628)
T TIGR02316 267 AIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA 346 (628)
T ss_pred HhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence 346788999999999999999987768899999999999763 489999999999999999999999999987643
Q ss_pred -CCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCC--CCCCCCCCccccCCCceEEEEe
Q 028779 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF--AGSRNIGSAGALAPGVEALIVS 157 (204)
Q Consensus 81 -~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~~~G~p~~~~~v~v~d 157 (204)
....++++||.++++|+++++++.+++++.+ +..+++.||+||++......... ......+++|+|+|+++++|+|
T Consensus 347 ~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d 425 (628)
T TIGR02316 347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD 425 (628)
T ss_pred ccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEE
Confidence 2345788999999999999999999999988 68899999999998544332221 1123457899999999999999
Q ss_pred CCCCCCCCCCCcceEEEecC---CcchhhcCCccccccccc---hhhhcccc
Q 028779 158 VDTQKPLPPNQLGEIWLRGP---NMMRGIMLIASIILSSWG---FRKIMHSF 203 (204)
Q Consensus 158 ~~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~---~~gw~~~~ 203 (204)
+++|++++.|+.|||+++|| +.+.|||++++.+.+.+. .++||+||
T Consensus 426 ~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TG 477 (628)
T TIGR02316 426 EATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSF 477 (628)
T ss_pred CCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECC
Confidence 66899999999999999998 578999999988776542 36799997
No 44
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.97 E-value=2.3e-29 Score=209.86 Aligned_cols=193 Identities=23% Similarity=0.343 Sum_probs=167.7
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHH--hcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIE--KHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..+.++|++++.+|++|++++...+++++..|+++++.+.+++...+..+. ++++|.++.+|+++..+.+.+......
T Consensus 171 ~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 250 (488)
T PRK09088 171 GRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAA 250 (488)
T ss_pred hCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccc
Confidence 457789999999999999999887888999999999998889999998886 489999999999999998876555566
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCC-CCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS-FAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
++++|.+++||++++.+..+++.+. ++++++.||+||++.+...... .......+++|.|.|+++++|+| ++++++
T Consensus 251 ~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~ 327 (488)
T PRK09088 251 LRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDC 327 (488)
T ss_pred cccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCCC
Confidence 7899999999999999998888765 7899999999999875433211 11123557899999999999999 789999
Q ss_pred CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.|+.|||+++|+.++.||+++++.+++.+..+|||+||
T Consensus 328 ~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TG 366 (488)
T PRK09088 328 PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTG 366 (488)
T ss_pred cCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeec
Confidence 999999999999999999999999999989889999997
No 45
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.97 E-value=2e-29 Score=213.73 Aligned_cols=188 Identities=26% Similarity=0.442 Sum_probs=165.5
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~ 91 (204)
++++++.+|++|++++...++..+..|+++++.. ..++..+++.++++++|++..+|+++..|++.+.....+++++|.
T Consensus 258 ~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~ 337 (562)
T PRK12492 258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKL 337 (562)
T ss_pred CeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeE
Confidence 4678999999999999877778888999877664 468999999999999999999999999998877656667889999
Q ss_pred eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779 92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171 (204)
Q Consensus 92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge 171 (204)
++++|+++++.+.+++++.+ ++++++.||+||++.++....... ....+++|+|+++++++|+| ++++++++|+.||
T Consensus 338 ~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~Ge 414 (562)
T PRK12492 338 TNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGE-LARLGTVGIPVPGTALKVID-DDGNELPLGERGE 414 (562)
T ss_pred EEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcc-cccCCccceecCCCEEEEEC-CCCCCCCCCCceE
Confidence 99999999999999999887 799999999999988766543222 23457899999999999999 7889999999999
Q ss_pred EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|+++|+.++.|||++++.+++.|..+|||+||
T Consensus 415 l~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG 446 (562)
T PRK12492 415 LCIKGPQVMKGYWQQPEATAEALDAEGWFKTG 446 (562)
T ss_pred EEEeCCccccccccCchhhhhcccCCCceecC
Confidence 99999999999999999999999778999997
No 46
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=2.2e-29 Score=213.80 Aligned_cols=189 Identities=28% Similarity=0.390 Sum_probs=169.2
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~ 91 (204)
.+|++++.+|++|.+++...++.++..|+++++.+..+++.+++.++++++|++.++|++++.|++.......+++++|.
T Consensus 261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~ 340 (573)
T PRK05605 261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRN 340 (573)
T ss_pred CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccE
Confidence 47899999999999999887788899999999998889999999999999999999999999999877666677889999
Q ss_pred eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCC-CCCCCCCCcc
Q 028779 92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQLG 170 (204)
Q Consensus 92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~-~~~~~~g~~G 170 (204)
++++|+++++++.+++.+.+ +..+++.||+||++++........ ....+++|+|++++.++|+|+++ +++++.|+.|
T Consensus 341 i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~G 418 (573)
T PRK05605 341 AFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSD-DRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEG 418 (573)
T ss_pred EEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCccc-CCcCCccccCCCCCEEEEEcCCCCCccCCCCCee
Confidence 99999999999999999887 688999999999987766543322 24457899999999999999666 6899999999
Q ss_pred eEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 171 EIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 171 el~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
||+++|+.++.||+++++.+.+.|. +|||+|+
T Consensus 419 el~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG 450 (573)
T PRK05605 419 ELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTG 450 (573)
T ss_pred EEEEecCchhhhhcCChhHhhhccc-CCCcccC
Confidence 9999999999999999999998887 6899997
No 47
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=99.97 E-value=1.7e-29 Score=212.97 Aligned_cols=196 Identities=22% Similarity=0.296 Sum_probs=169.1
Q ss_pred cccccCCCCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhC--CCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--GLV 81 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~--~~~ 81 (204)
...++++++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. ...
T Consensus 215 ~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~ 294 (536)
T PRK10946 215 VEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG 294 (536)
T ss_pred HHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC
Confidence 34567889999999999999988764 477889999999999889999999999999999999999999999875 223
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC-CCceEEEEeCCC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT 160 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~v~d~~~ 160 (204)
....++++|.+++||+++++++.+++.+.+ ++++++.||+||+....... .........++|+|+ |++.++++| ++
T Consensus 295 ~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~v~i~d-~~ 371 (536)
T PRK10946 295 SRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDDEVWVAD-AD 371 (536)
T ss_pred ccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecC-CCccccccccCCcccCCCceEEEEC-CC
Confidence 345578999999999999999999999988 78999999999965443322 112223457899998 899999999 88
Q ss_pred CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++++++|+.|||+++|+.++.|||++++.+.+.|..+|||+||
T Consensus 372 ~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TG 414 (536)
T PRK10946 372 GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 414 (536)
T ss_pred CCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecC
Confidence 9999999999999999999999999999999999889999997
No 48
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=217.38 Aligned_cols=182 Identities=22% Similarity=0.212 Sum_probs=152.6
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCH---HHHHHHHHhcCceEEEechHHHHHHHhCC----CCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHG----LVKK 83 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~ 83 (204)
.+|++++.+|++|++++...++.+++.|+++++.+. +++ ..+++.++++++|+++++|+++..|++.. ....
T Consensus 251 ~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~ 330 (614)
T PRK08180 251 EPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRR 330 (614)
T ss_pred CCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhh
Confidence 568999999999999987778889999999999763 444 46788899999999999999999887642 2223
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHh----CC-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKN----VP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV 158 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~----~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~ 158 (204)
..+++||.+++||+++++++.+++.+. ++ ++++++.||+||++.+++..... ....+++|+|+|+++++++|
T Consensus 331 ~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d- 407 (614)
T PRK08180 331 RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVP- 407 (614)
T ss_pred hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEec-
Confidence 457899999999999999999999875 32 37899999999998766543322 24567999999999999998
Q ss_pred CCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 159 DTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 159 ~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+ |..|||+++|++++.|||++++.|++.|..+||||||
T Consensus 408 ~-------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TG 445 (614)
T PRK08180 408 V-------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSG 445 (614)
T ss_pred C-------CCCcEEEEecCccchhhcCChhHhHhhcccCCceecc
Confidence 3 3459999999999999999999999999878999997
No 49
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.97 E-value=1.8e-29 Score=219.08 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=164.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
.+++.++|++++..|++|.+++...++.+|..|+++++.+ .+++..+.+.++++++|+++++|+++..+++... ..+
T Consensus 181 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~ 258 (705)
T PRK06060 181 ALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDS 258 (705)
T ss_pred hhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--ccc
Confidence 4678889999999999999988666788999999999986 4789999999999999999999999999987543 345
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
++++|.+++||+++++++.+++.+.|++.++++.||+||++......... .....++|+|+++++++|+| +++++++
T Consensus 259 ~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d-~~g~~~~ 335 (705)
T PRK06060 259 FRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVA-PDGTTAG 335 (705)
T ss_pred ccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC--CCCcCcccccCCCcEEEEEC-CCCCCCC
Confidence 68999999999999999999999999889999999999998665433222 23467899999999999999 7799999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.|+.|||+++|++++.|||++++.+. ..+|||+||
T Consensus 336 ~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TG 370 (705)
T PRK06060 336 PGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTR 370 (705)
T ss_pred CCCceEEEEccchhhhhhhCCCcccc---cCCCcEECC
Confidence 99999999999999999999998753 347999997
No 50
>PRK06188 acyl-CoA synthetase; Validated
Probab=99.97 E-value=2.5e-29 Score=211.35 Aligned_cols=193 Identities=30% Similarity=0.414 Sum_probs=169.6
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|.+++. ++.+++.|+++++.+.+++..+++.++++++|+++++|+++..+++.+.....+
T Consensus 202 ~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~ 279 (524)
T PRK06188 202 AEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRD 279 (524)
T ss_pred hhcCCCcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCC
Confidence 456788899999999999998874 567899999999999999999999999999999999999999999887666677
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC----CCCCCCCccccCCCceEEEEeCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA----GSRNIGSAGALAPGVEALIVSVDTQ 161 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~----~~~~~~~~G~p~~~~~v~v~d~~~~ 161 (204)
++++|.+++||++++++..+++.+.+ +..+++.||+||++..+....... ......++|+|+|+++++++| +++
T Consensus 280 l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~ 357 (524)
T PRK06188 280 LSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDG 357 (524)
T ss_pred CcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCC
Confidence 89999999999999999999999888 577999999999976554432211 123556899999999999999 679
Q ss_pred CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 162 KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 162 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++++.|+.|||+++|+.++.||+++++.+.+.|. +|||+|+
T Consensus 358 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TG 398 (524)
T PRK06188 358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFR-DGWLHTG 398 (524)
T ss_pred CCCCCCCeeEEEEECcchhhhhcCChHHhhhhhc-CCceeec
Confidence 9999999999999999999999999999988886 8999997
No 51
>PRK09274 peptide synthase; Provisional
Probab=99.97 E-value=1.2e-29 Score=214.44 Aligned_cols=191 Identities=25% Similarity=0.298 Sum_probs=158.1
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-------CCCHHHHHHHHHhcCceEEEechHHHHHHHh
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-------KFDLEMFLRAIEKHRVTHIWVVPPLILALAK 77 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-------~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 77 (204)
...++++++|+.++++|++|++++ ..|+++++.+ .+++..+++.|+++++|+++++|++++.|++
T Consensus 207 ~~~~~~~~~~~~~~~~pl~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 278 (552)
T PRK09274 207 REDYGIEPGEIDLPTFPLFALFGP--------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGR 278 (552)
T ss_pred HHHhCCCCCceeeeccCHHHhhhh--------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHH
Confidence 345678899999999999886543 3477877754 3689999999999999999999999999988
Q ss_pred CCCCCCCCCccceeeeecCCCCCHHHHHHHHHhCC-CCcEEcccccccccccccccCCC------C--CCCCCCCccccC
Q 028779 78 HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSF------A--GSRNIGSAGALA 148 (204)
Q Consensus 78 ~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~------~--~~~~~~~~G~p~ 148 (204)
.......++++||.++++|+++++++.+++++.|+ ++++++.||+||++.++...... . ......++|+|+
T Consensus 279 ~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 358 (552)
T PRK09274 279 YGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPV 358 (552)
T ss_pred HhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccC
Confidence 76555668899999999999999999999999996 48999999999998765543211 0 011234789999
Q ss_pred CCceEEEEeCC--------CCCCCCCCCcceEEEecCCcchhhcCCccccccccc--hhh--hcccc
Q 028779 149 PGVEALIVSVD--------TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG--FRK--IMHSF 203 (204)
Q Consensus 149 ~~~~v~v~d~~--------~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~--~~g--w~~~~ 203 (204)
|+++++|+|++ ++++++.|+.|||+++|++++.|||++++.|.+.|. .+| ||+||
T Consensus 359 ~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TG 425 (552)
T PRK09274 359 DGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMG 425 (552)
T ss_pred CCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcC
Confidence 99999999953 567899999999999999999999999999987763 356 99997
No 52
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.97 E-value=2.6e-29 Score=210.25 Aligned_cols=191 Identities=16% Similarity=0.125 Sum_probs=155.4
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK 83 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~ 83 (204)
.++++++|++++.+|++|.+++.. ++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ...
T Consensus 154 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~ 232 (499)
T PLN03051 154 HMDIQPGDVVCWPTNLGWMMGPWL-LYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEG 232 (499)
T ss_pred hcCCCCCCEEEEccCcceeeehHH-HHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccccc
Confidence 457888999999999999999765 8889999999999874 789999999999999999999999999987643 334
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHhCC-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK 162 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~ 162 (204)
.++++||.++++|+++++++.+++++.++ ++.+++.||+||++.......... ....+++|+|.++++++|+| ++++
T Consensus 233 ~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~ivd-~~g~ 310 (499)
T PLN03051 233 LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQ-PQAPGAFSTASLGTRFVLLN-DNGV 310 (499)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccC-CCCCccccCCCCCceEEEEC-CCCC
Confidence 57789999999999999999988877432 478999999999865433222111 23457899999999999999 8899
Q ss_pred CCCCC--CcceEEEecCCc--chhhcCCccccccccchhh----------hcccc
Q 028779 163 PLPPN--QLGEIWLRGPNM--MRGIMLIASIILSSWGFRK----------IMHSF 203 (204)
Q Consensus 163 ~~~~g--~~Gel~v~g~~~--~~gY~~~~~~t~~~~~~~g----------w~~~~ 203 (204)
+++.| +.|||+++||.+ +.|||+++ .++ .+. +| |||||
T Consensus 311 ~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~~~-~g~~~~~~~~~~~~~TG 362 (499)
T PLN03051 311 PYPDDQPCVGEVALAPPMLGASDRLLNAD-HDK-VYY-KGMPMYGSKGMPLRRHG 362 (499)
T ss_pred CCCCCCCcceEEEEecCcCCCCccccCCc-ccc-eee-ecCCccccCCcceeecC
Confidence 99988 589999999976 57999865 333 332 34 68997
No 53
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.97 E-value=2.9e-29 Score=211.62 Aligned_cols=194 Identities=23% Similarity=0.317 Sum_probs=165.0
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|.+++.. ++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++.. ....+
T Consensus 215 ~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~ 292 (540)
T PRK06164 215 RAYGYDPGAVLLAALPFCGVFGFST-LLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERAD 292 (540)
T ss_pred HhcCCCCCCEEEEcCCchhHHHHHH-HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCC
Confidence 4567889999999999999999976 889999999999999999999999999999999999999999998872 34567
Q ss_pred CccceeeeecC-CCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-CCCCCCccccC-CCceEEEEeCCCCC
Q 028779 86 LSSLKLVGSGA-APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALA-PGVEALIVSVDTQK 162 (204)
Q Consensus 86 l~~lr~~~~~G-~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~~G~p~-~~~~v~v~d~~~~~ 162 (204)
++++|.+..+| .+.+.++.+++.+. ++++++.||+||++.+......... .....+.|.|+ ++++++++|+++++
T Consensus 293 ~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~ 370 (540)
T PRK06164 293 FPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGA 370 (540)
T ss_pred CcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCc
Confidence 88999887765 55666777776665 7899999999999877655432221 22334668875 89999999989999
Q ss_pred CCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 163 PLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 163 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++++|+.|||+++|++++.|||++++.|++.|..+|||+||
T Consensus 371 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TG 411 (540)
T PRK06164 371 LLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTG 411 (540)
T ss_pred CCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecC
Confidence 99999999999999999999999999999999889999997
No 54
>PRK12467 peptide synthase; Provisional
Probab=99.97 E-value=1.6e-29 Score=247.54 Aligned_cols=195 Identities=17% Similarity=0.240 Sum_probs=171.3
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 82 (204)
...++++++|+++...|++|+.+... ++.+|..|+++++.+. +++..+++.|+++++|+++++|++++.|++.. .
T Consensus 3270 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~ 3346 (3956)
T PRK12467 3270 AEAYELDANDRVLLFMSFSFDGAQER-FLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--G 3346 (3956)
T ss_pred HHhcCCCcCCEEEEecCccHhHHHHH-HHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--c
Confidence 45678899999999999999988776 8999999999999875 68999999999999999999999999998754 2
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC---CCCCCCccccCCCceEEEEeCC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
..++++||.+++|||++++++.++|.+.++++.+++.||+||++..++....... .....++|+|+++++++|+| +
T Consensus 3347 ~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~ 3425 (3956)
T PRK12467 3347 GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-G 3425 (3956)
T ss_pred ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-C
Confidence 4467899999999999999999999999988999999999999876654332111 12346899999999999999 8
Q ss_pred CCCCCCCCCcceEEEecCCcchhhcCCccccccccchhh-------hcccc
Q 028779 160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRK-------IMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g-------w~~~~ 203 (204)
++++++.|+.|||+|+|+++++|||++++.|+++|..++ |||||
T Consensus 3426 ~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTG 3476 (3956)
T PRK12467 3426 QLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTG 3476 (3956)
T ss_pred CCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccc
Confidence 899999999999999999999999999999999997554 59997
No 55
>PRK13382 acyl-CoA synthetase; Provisional
Probab=99.97 E-value=5e-29 Score=210.28 Aligned_cols=189 Identities=21% Similarity=0.295 Sum_probs=161.7
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKF 84 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~ 84 (204)
.+..+.+|+++..+|++|.+++.. ++.++..|+++++.+.+++..+++.|+++++|++.++|++++.|++... ....
T Consensus 231 ~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 309 (537)
T PRK13382 231 RTPWRAEEPTVIVAPMFHAWGFSQ-LVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRY 309 (537)
T ss_pred hhCCCCCCeEEEecChHhhhHHHH-HHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccC
Confidence 456678999999999999999866 7888999999999988999999999999999999999999999987542 2234
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
+++++|.++++|++++++++++|.+.+ +..+++.||+||++.+++..... .....+++|+|+++++++++| ++++++
T Consensus 310 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~~~~~~i~d-~~~~~~ 386 (537)
T PRK13382 310 SGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPAD-LRAAPDTAGRPAEGTEIRILD-QDFREV 386 (537)
T ss_pred CccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChhH-hccCCCCccccCcCcEEEEEC-CCCCCC
Confidence 567899999999999999999999999 56799999999998766543322 234567899999999999999 788999
Q ss_pred CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.|+.|||+++|++++.||+ ++.++. +. +|||+||
T Consensus 387 ~~g~~GEl~v~g~~~~~gY~--~~~~~~-~~-~g~~~TG 421 (537)
T PRK13382 387 PTGEVGTIFVRNDTQFDGYT--SGSTKD-FH-DGFMASG 421 (537)
T ss_pred CCCCeeEEEEEcCCcccCcc--ccchhh-cc-CCCEeeC
Confidence 99999999999999999998 445543 44 7999997
No 56
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.97 E-value=7.7e-30 Score=218.93 Aligned_cols=197 Identities=21% Similarity=0.274 Sum_probs=160.6
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--C--CHHHHHHHHHhcCc---eEEEechHHHHHHHhC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRV---THIWVVPPLILALAKH 78 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~---t~~~~~p~~~~~l~~~ 78 (204)
..+++.++|++++++|++|++++.. ++.+++.|+++++.++ + ++..+++.++++++ +.+..+|+++..+++.
T Consensus 214 ~~~~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~ 292 (631)
T PRK07769 214 DALEGQEGDRGVSWLPFFHDMGLIT-VLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAA 292 (631)
T ss_pred HHcCCCCcceEEEeCCCcCchhhHH-HHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHh
Confidence 4567788999999999999999987 5556778999888753 4 89999999999886 7899999998777653
Q ss_pred ---CC--CCCCCCccceeeeecCCCCCHHHHHHHHHhCC-----CCcEEcccccccccccccccCCCCC-----------
Q 028779 79 ---GL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG----------- 137 (204)
Q Consensus 79 ---~~--~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~----------- 137 (204)
+. ....++++||.+++||+++++++.+++.+.|+ ...+++.||+||++..++.......
T Consensus 293 ~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~ 372 (631)
T PRK07769 293 RGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDEL 372 (631)
T ss_pred hccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHH
Confidence 11 12457889999999999999999999999873 3469999999998765554321110
Q ss_pred --------------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccch-------
Q 028779 138 --------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF------- 196 (204)
Q Consensus 138 --------------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~------- 196 (204)
.....++|+|.++++++|+|++++++++.|+.|||+++||+++.|||++++.|++.|..
T Consensus 373 ~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~ 452 (631)
T PRK07769 373 NAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLS 452 (631)
T ss_pred hCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccc
Confidence 01124789999999999999888999999999999999999999999999999988852
Q ss_pred ----------hhhcccc
Q 028779 197 ----------RKIMHSF 203 (204)
Q Consensus 197 ----------~gw~~~~ 203 (204)
+||||||
T Consensus 453 ~~~~~~~~~~~gw~~TG 469 (631)
T PRK07769 453 ESHAEGAPDDALWVRTG 469 (631)
T ss_pred cccccCcccCCCeeecc
Confidence 4899997
No 57
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.96 E-value=7.6e-29 Score=210.14 Aligned_cols=189 Identities=34% Similarity=0.565 Sum_probs=166.4
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~ 91 (204)
.++++++++|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++.......+++++|.
T Consensus 248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~ 327 (563)
T PRK06710 248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRA 327 (563)
T ss_pred CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhh
Confidence 35688999999999998876778899999999998899999999999999999999999999998866555566789999
Q ss_pred eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779 92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171 (204)
Q Consensus 92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge 171 (204)
++++|+++++++.+++++.+ +.++++.||+||++.++....... ....+++|+|++++.++++|+++++++++|+.||
T Consensus 328 v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Ge 405 (563)
T PRK06710 328 CISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWE-KRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGE 405 (563)
T ss_pred eeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCcccc-cccCCccCCCCCCCeEEEEECCCCccCCCCCceE
Confidence 99999999999999999988 788999999999987654332111 2345689999999999999988899999999999
Q ss_pred EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|+++|+.++.||+++++.+.+.|. +|||+||
T Consensus 406 l~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TG 436 (563)
T PRK06710 406 IVVKGPQIMKGYWNKPEETAAVLQ-DGWLHTG 436 (563)
T ss_pred EEEecCccchhhhCChHHHhhhcc-cCccccc
Confidence 999999999999999999988887 8999997
No 58
>PRK05852 acyl-CoA synthetase; Validated
Probab=99.96 E-value=6.3e-29 Score=209.43 Aligned_cols=195 Identities=24% Similarity=0.371 Sum_probs=165.6
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC-
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK- 82 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~- 82 (204)
..++++.+|++++.+|++|.+++...++.++..|+++++.+ .+++..+++.++++++|.++++|+++..|++.....
T Consensus 210 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 289 (534)
T PRK05852 210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP 289 (534)
T ss_pred HHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc
Confidence 45678899999999999999999888889999999998864 478999999999999999999999999998765322
Q ss_pred -CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---CCCCCCCcccc--CCCceEEEE
Q 028779 83 -KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGAL--APGVEALIV 156 (204)
Q Consensus 83 -~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~p--~~~~~v~v~ 156 (204)
..+++++|.++.+|+++++.+++++.+.| ++++++.||+||++.......... ......++|.+ .++++++++
T Consensus 290 ~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~ 368 (534)
T PRK05852 290 SGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIV 368 (534)
T ss_pred ccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEE
Confidence 34567999999999999999999999998 789999999999987665432211 01112234444 799999999
Q ss_pred eCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 157 SVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 157 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
| ++++++++|+.|||+++|+.+++|||++++.+.+.|. +|||||+
T Consensus 369 d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~-~g~~~TG 413 (534)
T PRK05852 369 G-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFT-DGWLRTG 413 (534)
T ss_pred C-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhhc-CCCcccC
Confidence 9 7789999999999999999999999999999999887 8999997
No 59
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.96 E-value=7.2e-29 Score=207.85 Aligned_cols=193 Identities=19% Similarity=0.235 Sum_probs=169.2
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..++++++|++++.+|++|..++...++.++..|+++++.+. +++..+++.|+++++|.+.++|+++..+++.......
T Consensus 196 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~ 275 (508)
T TIGR02262 196 NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAE 275 (508)
T ss_pred HhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccccc
Confidence 446788999999999999999997767888999999998764 6899999999999999999999999988776544445
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
...++|.++++|+++++++.+.|.+.| ++++++.||+||++.+....... ....+++|+|+++++++++| ++++++
T Consensus 276 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d-~~~~~~ 351 (508)
T TIGR02262 276 DQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVG-DGGQDV 351 (508)
T ss_pred ccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEEC-CCCCCC
Confidence 567999999999999999999999998 68999999999998765543222 23456899999999999999 999999
Q ss_pred CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++|+.|||+++|++++.||+++++.+++.|. +|||+|+
T Consensus 352 ~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~-~~~~~TG 389 (508)
T TIGR02262 352 AAGEPGELLISGPSSATMYWNNRAKTRDTFQ-GEWTRSG 389 (508)
T ss_pred CCCCeeEEEEecCccccccCCCHHHhHhhhh-cCceecc
Confidence 9999999999999999999999999988887 7999997
No 60
>PRK12316 peptide synthase; Provisional
Probab=99.96 E-value=2.8e-29 Score=249.01 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=171.0
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
...++++++|++++.+|++|+.++.. ++.+|+.|+++++.+ .+++..+++.++++++|++.++|++++.|++...
T Consensus 688 ~~~~~~~~~d~~l~~~p~~fd~~~~~-~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~- 765 (5163)
T PRK12316 688 QQAYGLGVGDTVLQKTPFSFDVSVWE-FFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED- 765 (5163)
T ss_pred HHhcCCCCCCEEEeeCCeehHHHHHH-HHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc-
Confidence 45678899999999999999999887 889999999999985 3799999999999999999999999999987543
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ 161 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~ 161 (204)
..+++++|.+++|||++++++.+++.+.+++++++|.||+||++..++............++|+|+++++++|+| +++
T Consensus 766 -~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~ 843 (5163)
T PRK12316 766 -VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANL 843 (5163)
T ss_pred -cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCC
Confidence 345789999999999999999999999988999999999999986544332222234566899999999999999 789
Q ss_pred CCCCCCCcceEEEecCCcchhhcCCccccccccch------hhhcccc
Q 028779 162 KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF------RKIMHSF 203 (204)
Q Consensus 162 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~------~gw~~~~ 203 (204)
++++.|+.|||+|+|+++++||+++++.|+++|.. ++|||||
T Consensus 844 ~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TG 891 (5163)
T PRK12316 844 EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTG 891 (5163)
T ss_pred CCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecC
Confidence 99999999999999999999999999999998852 4699998
No 61
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=99.96 E-value=8.8e-29 Score=207.35 Aligned_cols=194 Identities=22% Similarity=0.266 Sum_probs=168.1
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..+.++++|++++.+|++|.+++.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+... ...+
T Consensus 195 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~ 272 (515)
T TIGR03098 195 TYLENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESA 272 (515)
T ss_pred HHhCCCcccEEEEECchhhHhHHHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCC
Confidence 4467888999999999999999876 8899999999999988999999999999999999999999999987532 2346
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
++++|.++++|+++++.+.+++++.++++.+++.||+||++....... .......+++|+|+++++++++| +++++++
T Consensus 273 ~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~ 350 (515)
T TIGR03098 273 APSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLR-EDGSECA 350 (515)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEeccc-ccccCCCCCcceecCCCEEEEEC-CCCCCCC
Confidence 789999999999999999999999998899999999999876554322 22234567899999999999999 7899999
Q ss_pred CCCcceEEEecCCcchhhcCCccccccccch-----------hhhcccc
Q 028779 166 PNQLGEIWLRGPNMMRGIMLIASIILSSWGF-----------RKIMHSF 203 (204)
Q Consensus 166 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-----------~gw~~~~ 203 (204)
.|+.|||+++|+.++.|||++++.+.+.|.. ++||+|+
T Consensus 351 ~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG 399 (515)
T TIGR03098 351 PGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSG 399 (515)
T ss_pred CCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceecc
Confidence 9999999999999999999999988776642 2478886
No 62
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.96 E-value=1.1e-28 Score=206.69 Aligned_cols=194 Identities=33% Similarity=0.448 Sum_probs=173.0
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|.++++|++++.|++.......+
T Consensus 201 ~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~ 279 (521)
T PRK06187 201 AWLKLSRDDVYLVIVPMFHVHAWGL-PYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD 279 (521)
T ss_pred HhhCCCCCCEEEEeCCchHHhhHHH-HHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccC
Confidence 4567889999999999999999987 455999999999998889999999999999999999999999999887766678
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC----CCCCCCccccCCCceEEEEeCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG----SRNIGSAGALAPGVEALIVSVDTQ 161 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~~G~p~~~~~v~v~d~~~~ 161 (204)
++++|.++.+|++++.++.+++.+.| ++++++.||+||++.+......... .....++|+|+++++++|+| +++
T Consensus 280 ~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~ 357 (521)
T PRK06187 280 FSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDG 357 (521)
T ss_pred cchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCC
Confidence 89999999999999999999999999 8999999999999877665433221 12567899999999999999 678
Q ss_pred CCCCC--CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 162 KPLPP--NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 162 ~~~~~--g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++++. |+.|||+++|++++.||+++++.+.+.|. +|||+|+
T Consensus 358 ~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-~~~~~tG 400 (521)
T PRK06187 358 DELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID-GGWLHTG 400 (521)
T ss_pred CCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh-CCceecc
Confidence 88988 99999999999999999999999988887 7899997
No 63
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.96 E-value=8.7e-29 Score=206.87 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=167.9
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 82 (204)
..++...+|+++.++|++|.+++.. ++.++..|+++++.++ .++..+++.+.+++++.+..+|+++..++......
T Consensus 175 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~ 253 (502)
T TIGR01734 175 ADFPLSEGKQFLNQAPFSFDLSVMD-LYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN 253 (502)
T ss_pred HhCCCCCCceEEeecCceechhHHH-HHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc
Confidence 3467888999999999999998876 8899999999999875 48899999999999999999999998887765545
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---CCCCCCCccccCCCceEEEEeCC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
...++++|.++++|++++.++.+++.+.++++++++.||+||++.......... ......++|.|.++++++|+| +
T Consensus 254 ~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~ 332 (502)
T TIGR01734 254 QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-E 332 (502)
T ss_pred cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-C
Confidence 567889999999999999999999999999999999999999876444321111 123345799999999999999 7
Q ss_pred CCCCCCCCCcceEEEecCCcchhhcCCccccccccc---hhhhcccc
Q 028779 160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG---FRKIMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~---~~gw~~~~ 203 (204)
+++++++|+.|||+++|+.++.||+++++.+.+.|. .++|||||
T Consensus 333 ~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TG 379 (502)
T TIGR01734 333 EGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTG 379 (502)
T ss_pred CCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECC
Confidence 789999999999999999999999999999888763 34699997
No 64
>PRK13390 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=1.3e-28 Score=206.07 Aligned_cols=193 Identities=19% Similarity=0.235 Sum_probs=164.2
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK 83 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~ 83 (204)
..+.+..+|++++.+|++|++++.. .+..+..|+++++.+.+++..+++.|+++++|++.++|+++..+++.... ..
T Consensus 188 ~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 266 (501)
T PRK13390 188 AFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTR 266 (501)
T ss_pred HHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhccc
Confidence 3567888999999999999998865 34456789999999889999999999999999999999999998865421 33
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~ 163 (204)
.+++++|.++.+|+++++++.+.+++.+ +..+++.||+||++.++..... ......+++|+|+++ +++++| +++++
T Consensus 267 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g-~~~i~d-~~~~~ 342 (501)
T PRK13390 267 YDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDSP-DWLAHPGSVGRSVLG-DLHICD-DDGNE 342 (501)
T ss_pred CChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecch-hhccCCCCcCCcccc-eEEEEC-CCCCC
Confidence 4577999999999999999999999988 6789999999999876543221 112445789999999 799999 88999
Q ss_pred CCCCCcceEEEecCCcchhhcCCccccccccch--hhhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF--RKIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~--~gw~~~~ 203 (204)
+++|+.|||+++|+.++.|||++++.+++.+.. +||+|||
T Consensus 343 ~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tG 384 (501)
T PRK13390 343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVG 384 (501)
T ss_pred CCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcC
Confidence 999999999999999999999999999888753 6899987
No 65
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.96 E-value=1.4e-28 Score=211.00 Aligned_cols=196 Identities=23% Similarity=0.324 Sum_probs=164.3
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC----CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-- 80 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-- 80 (204)
.++++++|++++..|++|+.+....++.+|..|+++++.+ ..++..+++.++++++|+++++|++++.|.+...
T Consensus 269 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 348 (629)
T PRK10524 269 IFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL 348 (629)
T ss_pred hcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc
Confidence 4678899999999999999888776889999999999875 3579999999999999999999999999887543
Q ss_pred CCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCC--CCCCCCCCCccccCCCceEEEEeC
Q 028779 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS--FAGSRNIGSAGALAPGVEALIVSV 158 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~~~G~p~~~~~v~v~d~ 158 (204)
....++++||.++++|+++++++.+++.+.+ ++++++.||+||++........ .......+++|+|+++++++|+|+
T Consensus 349 ~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~ 427 (629)
T PRK10524 349 LRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNE 427 (629)
T ss_pred ccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeC
Confidence 2345678999999999999999999999988 6889999999999853322211 111234678999999999999995
Q ss_pred CCCCCCCCCCcceEEEecC---CcchhhcCCccccccccc---hhhhcccc
Q 028779 159 DTQKPLPPNQLGEIWLRGP---NMMRGIMLIASIILSSWG---FRKIMHSF 203 (204)
Q Consensus 159 ~~~~~~~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~---~~gw~~~~ 203 (204)
++|++++.|+.|||+++|| +++.|||++++.+.+.+. .+|||+||
T Consensus 428 ~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG 478 (629)
T PRK10524 428 VTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF 478 (629)
T ss_pred CCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcC
Confidence 4899999999999999998 578999999987766542 36899997
No 66
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.96 E-value=1e-28 Score=227.49 Aligned_cols=187 Identities=14% Similarity=0.092 Sum_probs=159.8
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
...+++.++|+++...|++|+.++.. ++.+|+.|+++++.+. .++..+++.|+++++|+++++|++++.|....
T Consensus 448 ~~~~~~~~~d~~~~~~~~~~d~~~~~-i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~-- 524 (1389)
T TIGR03443 448 AKRFGLSENDKFTMLSGIAHDPIQRD-MFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA-- 524 (1389)
T ss_pred HHhcCCCCCCEEEEecCceecchHHH-HHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc--
Confidence 34577889999999999999988877 8899999999999864 37889999999999999999999999987543
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC---------CCCCCCccccCCCce
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVE 152 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~ 152 (204)
...++++|.++++|+++++...+++.+.++++++++.||+||++..++....... .....++|+|+++++
T Consensus 525 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 603 (1389)
T TIGR03443 525 -TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQ 603 (1389)
T ss_pred -cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCE
Confidence 3457899999999999999999999999889999999999999876554321110 123467999999999
Q ss_pred EEEEeCCC-CCCCCCCCcceEEEecCCcchhhcCCccccccccc
Q 028779 153 ALIVSVDT-QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG 195 (204)
Q Consensus 153 v~v~d~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~ 195 (204)
++|+|+++ +++++.|+.|||+|+||++++|||++|+.|+++|.
T Consensus 604 ~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~ 647 (1389)
T TIGR03443 604 LLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFV 647 (1389)
T ss_pred EEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhcc
Confidence 99999543 57899999999999999999999999999999884
No 67
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=99.96 E-value=5e-29 Score=209.72 Aligned_cols=193 Identities=24% Similarity=0.269 Sum_probs=151.6
Q ss_pred cccccCC-CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--C--CHHHHHHHHHhcCceEEEechHHHHHHHhCC
Q 028779 5 DQETAGE-LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79 (204)
Q Consensus 5 ~~~~~~~-~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 79 (204)
...+++. ++|++++++|++|++++.. ++.+++.|+++++.+. + ++..+++.++++++|++..+|.++..+.+..
T Consensus 185 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~ 263 (525)
T PRK05851 185 NARVGLDAATDVGCSWLPLYHDMGLAF-LLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYA 263 (525)
T ss_pred HHHhCCCCCCCeEEEcCCCccCccHHH-HHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhh
Confidence 3456777 8999999999999999976 7889999999999863 4 6889999999999998755444444443322
Q ss_pred -CCCCCCCccceeeeecCCCCCHHHHHHHHHh---C--CCCcEEcccccccccccccccCCCC-------------CCCC
Q 028779 80 -LVKKFDLSSLKLVGSGAAPLGKELMEECAKN---V--PSATVIQGYGLTETSGIATMENSFA-------------GSRN 140 (204)
Q Consensus 80 -~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~---~--~~~~~~~~yG~tE~~~~~~~~~~~~-------------~~~~ 140 (204)
.....++++||.++++|+++++++.+++.+. + +...+++.||+||++..++...... ....
T Consensus 264 ~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (525)
T PRK05851 264 RRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARR 343 (525)
T ss_pred ccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccce
Confidence 1234557899999999999999999999875 2 2346999999999976655432110 1123
Q ss_pred CCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 141 IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 141 ~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
..++|+|+|+++++|+|++.+++++.|+.|||+++|++++.|||++++.+ .+||||||
T Consensus 344 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TG 401 (525)
T PRK05851 344 HAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTG 401 (525)
T ss_pred eeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceecc
Confidence 46799999999999999555567899999999999999999999998643 36899997
No 68
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.96 E-value=3.1e-28 Score=206.23 Aligned_cols=188 Identities=27% Similarity=0.402 Sum_probs=165.3
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~ 91 (204)
++++++.+|++|.+++....+.++..|++.++.+. .++..+++.++++++|.+..+|+++..+++.......+++++|.
T Consensus 252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~ 331 (557)
T PRK07059 252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV 331 (557)
T ss_pred CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE
Confidence 45788899999999987767788888988777654 58999999999999999999999999999876656667889999
Q ss_pred eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779 92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171 (204)
Q Consensus 92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge 171 (204)
++.||+++++.+.++|.+.+ ++++++.||+||++.++...... ......++|.|+++++++++| ++++++++|+.||
T Consensus 332 ~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Ge 408 (557)
T PRK07059 332 ANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGE 408 (557)
T ss_pred EEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceE
Confidence 99999999999999999988 79999999999998876654322 224467899999999999999 8899999999999
Q ss_pred EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|+++|+.++.|||++++.+.+.|..+|||+|+
T Consensus 409 l~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG 440 (557)
T PRK07059 409 ICIRGPQVMAGYWNRPDETAKVMTADGFFRTG 440 (557)
T ss_pred EEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence 99999999999999999999888889999997
No 69
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.96 E-value=3.5e-28 Score=205.39 Aligned_cols=190 Identities=23% Similarity=0.375 Sum_probs=167.3
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
...++++++|++++.+|++|.+++.. ++.++..|+++++.+++++..+++.|+++++|.++++|+++..|++.+.....
T Consensus 213 ~~~~~~~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~ 291 (542)
T PRK06155 213 AEDLEIGADDVLYTTLPLFHTNALNA-FFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESD 291 (542)
T ss_pred HHhcCCCCCCEEEEecCHHHHHHHHH-HHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcccc
Confidence 34567889999999999999999987 78999999999999999999999999999999999999999999887766666
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
..+++|.++.+| +++.+.+++++.+ +.++++.||+||++.++..... ....+++|.|.++++++|+| ++++++
T Consensus 292 ~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d-~~~~~~ 364 (542)
T PRK06155 292 RAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVD-EHDQEL 364 (542)
T ss_pred ccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCCC---CCCCCCcCccCCCceEEEEC-CCCCCC
Confidence 677899877655 6789999999988 7899999999999877654321 24567899999999999999 779999
Q ss_pred CCCCcceEEEecC---CcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGP---NMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~---~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.|+.|||+++|+ +++.||+++++.+++.|. +|||+||
T Consensus 365 ~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~-~~~~~TG 405 (542)
T PRK06155 365 PDGEPGELLLRADEPFAFATGYFGMPEKTVEAWR-NLWFHTG 405 (542)
T ss_pred CCCCceEEEEecCCccccchhhcCCHHHHHHhhc-CCcEecc
Confidence 9999999999998 799999999999998887 8999997
No 70
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=7.7e-29 Score=214.86 Aligned_cols=186 Identities=24% Similarity=0.275 Sum_probs=148.1
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHH-------HHHhcCceEEEechHHHHHHHhCCCC-
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWVVPPLILALAKHGLV- 81 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~-------~i~~~~~t~~~~~p~~~~~l~~~~~~- 81 (204)
++++|++++.+|++|+++... ....+..|+++.+. ++..+.+ .++++++|++.++|.+++.+.+....
T Consensus 307 ~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~ 382 (700)
T PTZ00216 307 PEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAK 382 (700)
T ss_pred CCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHH
Confidence 367899999999999999876 45567888887763 4555554 68899999999999999887542100
Q ss_pred ------------------------CCC----------------CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccc
Q 028779 82 ------------------------KKF----------------DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYG 121 (204)
Q Consensus 82 ------------------------~~~----------------~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG 121 (204)
... ...++|.+++||+++++++.++++..+ + ++++.||
T Consensus 383 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG 460 (700)
T PTZ00216 383 LPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWG 460 (700)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccC
Confidence 000 015799999999999999998888777 5 8999999
Q ss_pred cccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCC-CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhc
Q 028779 122 LTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIM 200 (204)
Q Consensus 122 ~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~ 200 (204)
+||+++..+..... ....+++|+|+|+++++|+|++.. ...+++..|||+++||+++.|||++|+.|++.|+.+|||
T Consensus 461 ~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~ 538 (700)
T PTZ00216 461 LTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWF 538 (700)
T ss_pred cccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCe
Confidence 99998765544332 245689999999999999994432 234567789999999999999999999999999889999
Q ss_pred ccc
Q 028779 201 HSF 203 (204)
Q Consensus 201 ~~~ 203 (204)
|||
T Consensus 539 ~TG 541 (700)
T PTZ00216 539 HTG 541 (700)
T ss_pred ecc
Confidence 998
No 71
>PRK06178 acyl-CoA synthetase; Validated
Probab=99.96 E-value=4e-28 Score=205.89 Aligned_cols=195 Identities=26% Similarity=0.323 Sum_probs=164.8
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~ 87 (204)
...+++|++++++|++|++++...++.++..|+++++.+++++..+++.++++++|.+.++|..+..+++.......+++
T Consensus 246 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~ 325 (567)
T PRK06178 246 VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLS 325 (567)
T ss_pred ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcc
Confidence 55678999999999999999987788899999999999999999999999999999999999999999877655556677
Q ss_pred cceeeee--cCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC-----CCCCCCCccccCCCceEEEEeCCC
Q 028779 88 SLKLVGS--GAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-----GSRNIGSAGALAPGVEALIVSVDT 160 (204)
Q Consensus 88 ~lr~~~~--~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-----~~~~~~~~G~p~~~~~v~v~d~~~ 160 (204)
++|.+.. .++.+++++.+++++.++...+.+.||+||++.......... ......++|+|+|+++++++|+++
T Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~ 405 (567)
T PRK06178 326 SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFET 405 (567)
T ss_pred hheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCC
Confidence 8887644 458999999999999985444445899999876544322111 012446799999999999999888
Q ss_pred CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+++++.|+.|||+++|++++.|||++++.+.+.|. +|||+||
T Consensus 406 ~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-dg~~~TG 447 (567)
T PRK06178 406 GELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR-DGWLHTG 447 (567)
T ss_pred CCcCCCCCceEEEEECCcccccccCChhhhhhccc-CCceeec
Confidence 99999999999999999999999999999988886 7999997
No 72
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=99.96 E-value=2.1e-28 Score=210.80 Aligned_cols=190 Identities=27% Similarity=0.293 Sum_probs=153.1
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCC-------C-
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG-------L- 80 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-------~- 80 (204)
.++++|++++.+|++|+++... .+.++..|+++.+... ++..+++.|+++++|++.++|.+++.+.+.. .
T Consensus 262 ~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~ 339 (660)
T PLN02430 262 KMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNP 339 (660)
T ss_pred CCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCH
Confidence 4678999999999999999887 4567889999987654 7889999999999999999999998776410 0
Q ss_pred -----------------------CCCC---C----------C-ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccc
Q 028779 81 -----------------------VKKF---D----------L-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123 (204)
Q Consensus 81 -----------------------~~~~---~----------l-~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t 123 (204)
.... + + .++|.+++||+++++++.+.++ .+++..+++.||+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~T 418 (660)
T PLN02430 340 RRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLT 418 (660)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchh
Confidence 0000 0 1 5899999999999999876654 44467899999999
Q ss_pred cccccccccCCCCCCCCCCCccccCCCceEEEEe-CCCC-CCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcc
Q 028779 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVS-VDTQ-KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMH 201 (204)
Q Consensus 124 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~ 201 (204)
|+++..+.....+ ....+++|+|.|+++++++| ++.+ .+++.+..|||+++||+++.|||++++.|+++|. +||||
T Consensus 419 E~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~-dGw~~ 496 (660)
T PLN02430 419 ETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMK-DGWFH 496 (660)
T ss_pred hhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhh-cccee
Confidence 9987665543322 23468999999999999987 3433 5666777899999999999999999999999996 89999
Q ss_pred cc
Q 028779 202 SF 203 (204)
Q Consensus 202 ~~ 203 (204)
||
T Consensus 497 TG 498 (660)
T PLN02430 497 TG 498 (660)
T ss_pred cc
Confidence 97
No 73
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=99.96 E-value=7.9e-29 Score=214.56 Aligned_cols=191 Identities=23% Similarity=0.220 Sum_probs=149.3
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCC------C--HHHHHHHHHhcCceEEEechHHHHHHHhCCC
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF------D--LEMFLRAIEKHRVTHIWVVPPLILALAKHGL 80 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~------~--~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 80 (204)
++.++|++++.+|++|++++.. .+.++..|+++...... + +..+++.++++++|++.++|.++..+.+...
T Consensus 288 ~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~ 366 (696)
T PLN02387 288 KLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVR 366 (696)
T ss_pred CCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHH
Confidence 5778999999999999999887 44557778777664431 1 2345678999999999999999998864310
Q ss_pred CC-------------------------------C--C-------------CC-ccceeeeecCCCCCHHHHHHHHHhCCC
Q 028779 81 VK-------------------------------K--F-------------DL-SSLKLVGSGAAPLGKELMEECAKNVPS 113 (204)
Q Consensus 81 ~~-------------------------------~--~-------------~l-~~lr~~~~~G~~l~~~~~~~~~~~~~~ 113 (204)
.+ . . .+ .++|.+++||+++++++.++++..+ +
T Consensus 367 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g 445 (696)
T PLN02387 367 KKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-G 445 (696)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-C
Confidence 00 0 0 01 5899999999999999998888777 7
Q ss_pred CcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCC-CC--CCCCcceEEEecCCcchhhcCCcccc
Q 028779 114 ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK-PL--PPNQLGEIWLRGPNMMRGIMLIASII 190 (204)
Q Consensus 114 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~-~~--~~g~~Gel~v~g~~~~~gY~~~~~~t 190 (204)
+++++.||+||+++.++.....+ ...+++|+|+|+++++|+|++++. .+ .++..|||++|||.++.|||++|++|
T Consensus 446 ~~v~~~YG~TEt~~~~~~~~~~~--~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T 523 (696)
T PLN02387 446 APIGQGYGLTETCAGATFSEWDD--TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKT 523 (696)
T ss_pred CCeeEeechhhcccceeecCccc--CCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHH
Confidence 89999999999987665544332 456789999999999999954443 22 34557999999999999999999999
Q ss_pred ccccc--hhh--hcccc
Q 028779 191 LSSWG--FRK--IMHSF 203 (204)
Q Consensus 191 ~~~~~--~~g--w~~~~ 203 (204)
+++|. .+| |||||
T Consensus 524 ~~~f~~d~~G~~W~~TG 540 (696)
T PLN02387 524 DEVYKVDERGMRWFYTG 540 (696)
T ss_pred hhhhccccCCCceeecC
Confidence 99984 345 99998
No 74
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=99.96 E-value=4.6e-28 Score=203.34 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=166.6
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~ 87 (204)
..++++|++++.+|++|..+....++.++..|+++++.+++++..+++.++++++|++.++|++++.++..+........
T Consensus 209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 288 (517)
T PRK08008 209 CALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQH 288 (517)
T ss_pred cCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccc
Confidence 35678999999999999988887788999999999999999999999999999999999999999999876554444456
Q ss_pred cceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 028779 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167 (204)
Q Consensus 88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g 167 (204)
++|.+.++ .+++++..+.+.+.+ ++++++.||+||++..+....... .....++|+|+++++++++| +++++++.|
T Consensus 289 ~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g 364 (517)
T PRK08008 289 CLREVMFY-LNLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRD-DHNRPLPAG 364 (517)
T ss_pred cceeeEEe-cCCCHHHHHHHHHHh-CCeEEeeccccccccccccCCccc-cccCCccccCCCCcEEEEEC-CCCCCCCCC
Confidence 78887775 488999999999988 789999999999986555433222 24456899999999999999 889999999
Q ss_pred CcceEEEec---CCcchhhcCCccccccccchhhhcccc
Q 028779 168 QLGEIWLRG---PNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 168 ~~Gel~v~g---~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.|||+++| ++++.|||++++.+++.|..+||++||
T Consensus 365 ~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TG 403 (517)
T PRK08008 365 EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTG 403 (517)
T ss_pred CcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeecc
Confidence 999999998 689999999999999999889999997
No 75
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.96 E-value=2.3e-28 Score=199.21 Aligned_cols=193 Identities=22% Similarity=0.256 Sum_probs=166.8
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCC---CHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 82 (204)
..+.++++|++++..|++|.+++.. ++.++..|+++++.+.. .+..+.+.++++++|.+.++|++++.|++...
T Consensus 154 ~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-- 230 (408)
T TIGR01733 154 RRYGLDPDDRVLQFASLSFDASVEE-IFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP-- 230 (408)
T ss_pred HhcCCCCCceEEEecCCccchhHHH-HHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh--
Confidence 3567788999999999999999876 88999999999998764 36899999999999999999999999998754
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC-CCC--CCCCccccCCCceEEEEeCC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSR--NIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~--~~~~~G~p~~~~~v~v~d~~ 159 (204)
..+++||.++.+|+++++++.+++++.++++.+++.||+||++.++....... ... +..++|.|+++++++|+|+
T Consensus 231 -~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~- 308 (408)
T TIGR01733 231 -PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDD- 308 (408)
T ss_pred -hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECC-
Confidence 56789999999999999999999999997799999999999998775322111 111 2678999999999999994
Q ss_pred CCCCCCCCCcceEEEecCCcchhhcCCccccccccchh------h--hcccc
Q 028779 160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFR------K--IMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~------g--w~~~~ 203 (204)
+++++++|+.|||+++|+.++.||+++++.+++.|..+ | ||+|+
T Consensus 309 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TG 360 (408)
T TIGR01733 309 DLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTG 360 (408)
T ss_pred CCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECC
Confidence 48999999999999999999999999999998887633 2 99997
No 76
>PRK05857 acyl-CoA synthetase; Validated
Probab=99.96 E-value=2.6e-28 Score=206.06 Aligned_cols=191 Identities=21% Similarity=0.246 Sum_probs=157.6
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~ 87 (204)
+....+|++++.+|++|++++.. .+.+++.|+++++ ...++..+++.++++++|+++++|++++.|++.......+++
T Consensus 209 ~~~~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~ 286 (540)
T PRK05857 209 VTWVVGETTYSPLPATHIGGLWW-ILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVP 286 (540)
T ss_pred cccccCceeeecCCccccchHHH-HHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCc
Confidence 34556889999999999999886 7788999999876 446889999999999999999999999999887665567789
Q ss_pred cceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC---CCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
++|.++++|++++....+++ +.+ ++++++.||+||++........... ..+.+++|+|+++++++|+|++...++
T Consensus 287 ~lr~~~~gG~~~~~~~~~~~-~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~ 364 (540)
T PRK05857 287 SLRLVGYGGSRAIAADVRFI-EAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPT 364 (540)
T ss_pred cceEEEEcCccCCchhHHHH-HHh-CCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCcc
Confidence 99999999999998887644 555 7899999999999865443222211 124578999999999999994433333
Q ss_pred -----CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 -----PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 -----~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.|+.|||+++|+.++.|||++++.+++.|. +|||+||
T Consensus 365 ~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TG 407 (540)
T PRK05857 365 APGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTG 407 (540)
T ss_pred ccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC-CCceecc
Confidence 4578999999999999999999999999997 8999997
No 77
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.96 E-value=2.1e-28 Score=224.21 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=168.4
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
...++++++|++++..|++|..++.. ++.+|..|+++++.+ ..++..+++.++++++|++.++|+++..+++....
T Consensus 631 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~ 709 (1296)
T PRK10252 631 QNHYPLTADDVVLQKTPCSFDVSVWE-FFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTP 709 (1296)
T ss_pred HHhcCCCCCCEEEEeCCcchhhhHHH-HHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcc
Confidence 45678899999999999999999877 888999999999986 35899999999999999999999999998876432
Q ss_pred C--CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC-----CCCCCCccccCCCceEE
Q 028779 82 K--KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-----SRNIGSAGALAPGVEAL 154 (204)
Q Consensus 82 ~--~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~ 154 (204)
. ...++++|.+++||+++++++.+++.+.+ ++++++.||+||++..++....... .....++|+|+++++++
T Consensus 710 ~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ 788 (1296)
T PRK10252 710 EGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLR 788 (1296)
T ss_pred ccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEE
Confidence 2 23467999999999999999999999887 7899999999999876654332211 23356899999999999
Q ss_pred EEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchh------hhcccc
Q 028779 155 IVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFR------KIMHSF 203 (204)
Q Consensus 155 v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~------gw~~~~ 203 (204)
|+| +++++++.|+.|||+++|+.+++||+++++.|++.|..+ +||+||
T Consensus 789 i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TG 842 (1296)
T PRK10252 789 ILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTG 842 (1296)
T ss_pred EEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecC
Confidence 999 899999999999999999999999999999999998643 499997
No 78
>PRK12582 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=1.3e-28 Score=211.18 Aligned_cols=181 Identities=22% Similarity=0.202 Sum_probs=149.9
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCH---HHHHHHHHhcCceEEEechHHHHHHHhCCCC----CCC
Q 028779 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLV----KKF 84 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----~~~ 84 (204)
+|++++++|++|++++...++.++..|+++++.+. +++ ..+++.++++++|+++++|+++..|++.... ...
T Consensus 264 ~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~ 343 (624)
T PRK12582 264 PPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRS 343 (624)
T ss_pred CceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHH
Confidence 58999999999999988777889999999999763 444 3567778899999999999999988754221 123
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhC----C-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNV----P-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~----~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
++++||.+++||+++++++.+++.+.+ + ++++++.||+||++.++...... ....+++|+|+|++++++++
T Consensus 344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~~-- 419 (624)
T PRK12582 344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLAP-- 419 (624)
T ss_pred HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC--CCCCCCCCcCCCCcEEEEcc--
Confidence 467999999999999999999999863 2 36799999999998766532222 24567899999999999964
Q ss_pred CCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.|+.|||+++|++++.|||++++.|++.|..+||||||
T Consensus 420 ------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TG 457 (624)
T PRK12582 420 ------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLG 457 (624)
T ss_pred ------CCCceEEEEECCcccccccCCccchhhhcCccCCcccc
Confidence 47789999999999999999999999999878999997
No 79
>PRK12316 peptide synthase; Provisional
Probab=99.96 E-value=1.2e-28 Score=244.66 Aligned_cols=196 Identities=17% Similarity=0.223 Sum_probs=171.5
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC--CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 82 (204)
...++++++|++++.+|++|..+... ++.+|..|+++++.+. +++..+++.|+++++|+++++|++++.|.+.....
T Consensus 4727 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~ 4805 (5163)
T PRK12316 4727 GERYELTPDDRVLQFMSFSFDGSHEG-LYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD 4805 (5163)
T ss_pred HHhcCCCcCCeEEEecCcchhhHHHH-HHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc
Confidence 44678899999999999999999876 8899999999999864 38999999999999999999999999998765433
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---CCCCCCCccccCCCceEEEEeCC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
. ++++||.+++|||++++++.+++.+.++++++++.||+||++..++...... ......++|+|+++++++|+| +
T Consensus 4806 ~-~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~ 4883 (5163)
T PRK12316 4806 G-EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLD-G 4883 (5163)
T ss_pred c-CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEEC-C
Confidence 2 6789999999999999999999998888899999999999988765443222 123456899999999999999 8
Q ss_pred CCCCCCCCCcceEEEecCCcchhhcCCccccccccch-------hhhcccc
Q 028779 160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-------RKIMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~gw~~~~ 203 (204)
.+++++.|+.|||+|+|+++++|||++++.|+++|.. ++|||||
T Consensus 4884 ~~~~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTG 4934 (5163)
T PRK12316 4884 QLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTG 4934 (5163)
T ss_pred CCCcCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecC
Confidence 8999999999999999999999999999999999853 3599997
No 80
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=99.96 E-value=5.1e-29 Score=213.17 Aligned_cols=188 Identities=22% Similarity=0.314 Sum_probs=147.4
Q ss_pred ccc-CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CC--CHHHHHHHHH--hcCceEEEechHHHHHHHhCCC
Q 028779 7 ETA-GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KF--DLEMFLRAIE--KHRVTHIWVVPPLILALAKHGL 80 (204)
Q Consensus 7 ~~~-~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~--~~~~~~~~i~--~~~~t~~~~~p~~~~~l~~~~~ 80 (204)
.++ +.++|++++++|++|.+++...++.++..|.++++.+ .+ ++..+++.++ +++++.+..+|+++..+++...
T Consensus 228 ~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~ 307 (612)
T PRK12476 228 SIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRG 307 (612)
T ss_pred HhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhc
Confidence 345 6788999999999999999874545554444444433 23 8999999995 5899999999999888776421
Q ss_pred ----CCCCCCccceeeeecCCCCCHHHHHHHHHhCC-----CCcEEcccccccccccccccCCCCC--------------
Q 028779 81 ----VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG-------------- 137 (204)
Q Consensus 81 ----~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~-------------- 137 (204)
....+++++| +++||+++++++.+++.+.|+ ..++++.||+||++..++....+..
T Consensus 308 ~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (612)
T PRK12476 308 LPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAG 386 (612)
T ss_pred ChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCC
Confidence 1234678999 999999999999999999873 3469999999998765443221110
Q ss_pred -----------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccc
Q 028779 138 -----------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG 195 (204)
Q Consensus 138 -----------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~ 195 (204)
.....++|+|+++++++|+|++++++++.|+.|||+++|++++.|||++++.|+++|.
T Consensus 387 ~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 455 (612)
T PRK12476 387 RAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFG 455 (612)
T ss_pred CeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHh
Confidence 0122478999999999999965599999999999999999999999999999998884
No 81
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.96 E-value=5.7e-28 Score=202.48 Aligned_cols=193 Identities=25% Similarity=0.307 Sum_probs=166.1
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK 83 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~ 83 (204)
..+++.++|++++.+|++|..+... .+.++..|+++++.+.+++..+++.++++++|++.++|+++..|++... ...
T Consensus 189 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 267 (509)
T PRK12406 189 LIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAK 267 (509)
T ss_pred hhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhccc
Confidence 4567889999999999999988777 5567889999999888999999999999999999999999999987543 234
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~ 163 (204)
.+++++|.++.+|+++++++.+++.+.+ ++.+++.||+||++.++..... +.....+++|.|+++++++++| +++++
T Consensus 268 ~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~~~~ 344 (509)
T PRK12406 268 YDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFATSE-DALSHPGTVGKAAPGAELRFVD-EDGRP 344 (509)
T ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecCcc-cccccCCCcCccCCCcEEEEEC-CCCCC
Confidence 5678999999999999999999999988 6889999999999876554322 2224557899999999999999 77899
Q ss_pred CCCCCcceEEEecCCcch-hhcCCccccccccchhhhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMR-GIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~-gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++.|+.|||+++|+.++. ||+++++.+++.+. +|||+|+
T Consensus 345 ~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~-~~~~~TG 384 (509)
T PRK12406 345 LPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDR-GGFITSG 384 (509)
T ss_pred CCCCCceEEEEECCccccccccCCchhcccccC-CCCeEEc
Confidence 999999999999999876 99999988877665 8999997
No 82
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=5.7e-28 Score=202.88 Aligned_cols=189 Identities=19% Similarity=0.212 Sum_probs=162.3
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF 84 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~ 84 (204)
.++++++|+++..+|++|.+++.. ++.++..|++++..+.+++..+++.++++++|.+.++|+++..+.+.... ...
T Consensus 211 ~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 289 (516)
T PRK13383 211 RTRLRTGSRISVAMPMFHGLGLGM-LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARN 289 (516)
T ss_pred hhccCCCCeEEEecCCcchhhHHH-HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccC
Confidence 456788999999999999999977 77889999999998889999999999999999999999999999875431 234
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
+++++|.++++|+++++++.+++.+.| +..+++.||+||++........ .......++|+|+|+++++|+| ++++++
T Consensus 290 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~~~~~ 366 (516)
T PRK13383 290 PLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATPA-DLRDAPETVGKPVAGCPVRILD-RNNRPV 366 (516)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceecccc-ccccCCCcccCCCCCcEEEEEC-CCCCCC
Confidence 568999999999999999999999998 6789999999999876554332 2234567899999999999999 788999
Q ss_pred CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++|+.|||+++|+.++.||++++. +.+ .+||++||
T Consensus 367 ~~g~~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TG 401 (516)
T PRK13383 367 GPRVTGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTG 401 (516)
T ss_pred CCCCceEEEEecCcccccccCCch---hhe-ecCceecc
Confidence 999999999999999999998754 223 37999997
No 83
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.96 E-value=4.4e-28 Score=202.78 Aligned_cols=188 Identities=23% Similarity=0.288 Sum_probs=165.2
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC--CCCCCcc
Q 028779 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSS 88 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~l~~ 88 (204)
..++++++++|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.+.. ...++++
T Consensus 185 ~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 263 (502)
T PRK08276 185 GPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSS 263 (502)
T ss_pred CCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCccc
Confidence 46789999999999999887 56789999999999989999999999999999999999999999876532 3456789
Q ss_pred ceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCC
Q 028779 89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 168 (204)
Q Consensus 89 lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~ 168 (204)
+|.++++|++++.++.+++.+.+ +..+++.||+||++.++...... .....+++|+|+ +++++++| +++++++.|+
T Consensus 264 lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~ 339 (502)
T PRK08276 264 LRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITSED-WLAHPGSVGKAV-LGEVRILD-EDGNELPPGE 339 (502)
T ss_pred ceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecCcc-ccccCCCcceec-ccEEEEEC-CCCCCCcCCC
Confidence 99999999999999999999988 67899999999998865543221 124457899999 88999999 7789999999
Q ss_pred cceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 169 LGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 169 ~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.|||+++|+.++.|||++++.+++.+..+|||+|+
T Consensus 340 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TG 374 (502)
T PRK08276 340 IGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVG 374 (502)
T ss_pred ceEEEEECCCccchhcCCHHHHHHHhcCCCceeec
Confidence 99999999999999999999999999877999997
No 84
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.96 E-value=3.5e-28 Score=204.55 Aligned_cols=190 Identities=27% Similarity=0.434 Sum_probs=162.7
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
+.+++|+++..+|++|.+++.. ++ .+..|+++++.+ .++++.+++.++++++|.+.++|++++.+++.+.....++
T Consensus 202 ~~~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 279 (528)
T PRK07470 202 GTTEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDH 279 (528)
T ss_pred CCCcccEEEEeccchhHHHHHH-HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCC
Confidence 4677899999999999999875 44 466777776664 5799999999999999999999999999998776666778
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCC------CCCCCCCCccccCCCceEEEEeCCC
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF------AGSRNIGSAGALAPGVEALIVSVDT 160 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~------~~~~~~~~~G~p~~~~~v~v~d~~~ 160 (204)
+++|.++++|+++++.+.+++.+.+ +.++++.||+||++......... ......+++|.|+++++++++| ++
T Consensus 280 ~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~ 357 (528)
T PRK07470 280 SSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DE 357 (528)
T ss_pred cceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CC
Confidence 8999999999999999999999888 67899999999988765432211 0123456899999999999999 78
Q ss_pred CCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 161 QKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 161 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+++++.|+.|||+++|+.++.|||++++.+++.|. +|||+|+
T Consensus 358 ~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~-~~~~~TG 399 (528)
T PRK07470 358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAFR-DGWFRTG 399 (528)
T ss_pred CCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhc-CCcEecc
Confidence 99999999999999999999999999999988887 8999997
No 85
>PRK12467 peptide synthase; Provisional
Probab=99.96 E-value=2.2e-28 Score=239.67 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=170.2
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
...++++++|++++..|++|+.++.. ++.+|..|+++++.+. .++..+++.|+++++|+++++|++++.|.+...
T Consensus 1751 ~~~~~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~- 1828 (3956)
T PRK12467 1751 QEAYQLSAADVVLQFTSFAFDVSVWE-LFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE- 1828 (3956)
T ss_pred HHhcCCCcccEEEEecCccHHHHHHH-HHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-
Confidence 45678899999999999999999877 8899999999999863 589999999999999999999999999987422
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCC---CCCCCCCCccccCCCceEEEEeC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIVSV 158 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~~G~p~~~~~v~v~d~ 158 (204)
...++++||.+++|||++++++.++|.+.+++.+++|.||+||++..++..... .......++|+|++++++.|+|
T Consensus 1829 ~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld- 1907 (3956)
T PRK12467 1829 QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD- 1907 (3956)
T ss_pred ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-
Confidence 234578999999999999999999999999888999999999998766543222 1123356899999999999999
Q ss_pred CCCCCCCCCCcceEEEecCCcchhhcCCccccccccch-------hhhcccc
Q 028779 159 DTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-------RKIMHSF 203 (204)
Q Consensus 159 ~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~gw~~~~ 203 (204)
+++++++.|+.|||+++|+++++||+++++.|+++|.. ++|||||
T Consensus 1908 ~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1959 (3956)
T PRK12467 1908 ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959 (3956)
T ss_pred CCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceecc
Confidence 88999999999999999999999999999999998852 3599997
No 86
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.96 E-value=8.2e-28 Score=201.66 Aligned_cols=192 Identities=24% Similarity=0.289 Sum_probs=165.5
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC--CCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK 83 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~ 83 (204)
..+++.+++++++.+|++|.+++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+... ...
T Consensus 193 ~~~~~~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 271 (511)
T PRK13391 193 RLWGFRSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDK 271 (511)
T ss_pred HhcCCCCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhccc
Confidence 3456778999999999999999877 6788999999999998999999999999999999999999998876543 223
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~ 163 (204)
.+++++|.++.+|+++++++.+++++.+ +..+++.||+||++.+..... .......+++|+|+++ .++++| +++++
T Consensus 272 ~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~g-~~~i~d-~~~~~ 347 (511)
T PRK13391 272 YDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACDS-EEWLAHPGTVGRAMFG-DLHILD-DDGAE 347 (511)
T ss_pred CCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEecC-ccccccCCCcCCcccc-eEEEEC-CCCCC
Confidence 4578999999999999999999999988 688999999999987655432 2223456789999999 689999 88999
Q ss_pred CCCCCcceEEEecCCcchhhcCCccccccccchh-hhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFR-KIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~-gw~~~~ 203 (204)
++.|+.|||+++|+ ++.|||++++.+++.+..+ ||++||
T Consensus 348 ~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TG 387 (511)
T PRK13391 348 LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVG 387 (511)
T ss_pred CCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecC
Confidence 99999999999999 8999999999998887654 999997
No 87
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.96 E-value=4.7e-28 Score=210.62 Aligned_cols=188 Identities=22% Similarity=0.371 Sum_probs=156.2
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..++++++|++++.+|++|++++...++.++..|+++++.+. +++..+++.++++++|+++.+|+++..+.+.. ...
T Consensus 399 ~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~ 476 (718)
T PRK08043 399 TIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPY 476 (718)
T ss_pred HhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Ccc
Confidence 446788999999999999999998778899999999998875 57888899999999999999999998887642 335
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
++++||.+++||+++++++.+++++.| ++++++.||+||++......... ....+++|+|+|+++++++| +++.
T Consensus 477 ~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d-~~~~-- 550 (718)
T PRK08043 477 DFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLS-VPGI-- 550 (718)
T ss_pred cccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEec-CCCC--
Confidence 678999999999999999999999988 78999999999998766543322 24568999999999999998 4442
Q ss_pred CCCCcceEEEecCCcchhhcCC--ccc-------cccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLI--ASI-------ILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~--~~~-------t~~~~~~~gw~~~~ 203 (204)
++.|||+++|++++.|||++ ++. +.+.+..+||||||
T Consensus 551 --~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TG 596 (718)
T PRK08043 551 --EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTG 596 (718)
T ss_pred --CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecC
Confidence 45699999999999999983 442 22233347999998
No 88
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.96 E-value=1.2e-27 Score=201.89 Aligned_cols=189 Identities=35% Similarity=0.514 Sum_probs=164.6
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~ 91 (204)
..+++++.+|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++.+.....+++++|.
T Consensus 237 ~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~ 316 (541)
T TIGR03205 237 DVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLAT 316 (541)
T ss_pred CCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccce
Confidence 45799999999999998887888999999999988889999999999999999999999999998765444556789999
Q ss_pred eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEe-CCCCCCCCCCCcc
Q 028779 92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS-VDTQKPLPPNQLG 170 (204)
Q Consensus 92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d-~~~~~~~~~g~~G 170 (204)
++.+|+++++++.+++++.+ +.++++.||+||++..++...... ....+++|.|++++++++++ .+++++++.|+.|
T Consensus 317 i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~G 394 (541)
T TIGR03205 317 IGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEG-PDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVG 394 (541)
T ss_pred EEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCC-CCCCCCcceeccCceeEEEecCCCCccCCCCCee
Confidence 99999999999999998887 689999999999987766543222 23456899999999988864 2678899999999
Q ss_pred eEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 171 EIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 171 el~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
||+++|++++.|||++++.+++.|. ++||+||
T Consensus 395 el~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TG 426 (541)
T TIGR03205 395 ELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTG 426 (541)
T ss_pred EEEEecCCccccccCChhhhHhhhc-cCCcccC
Confidence 9999999999999999999998887 7999997
No 89
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.96 E-value=1.2e-27 Score=202.71 Aligned_cols=188 Identities=26% Similarity=0.368 Sum_probs=162.9
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcccee
Q 028779 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~ 91 (204)
++++++.+|++|.+++....+.++..|+++++. +..++..+++.++++++|++..+|+++..+.+.......++++||.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~ 333 (560)
T PRK08751 254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKM 333 (560)
T ss_pred CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhhee
Confidence 467888999999999876566677777777665 4578999999999999999999999999999876655667889999
Q ss_pred eeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcce
Q 028779 92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171 (204)
Q Consensus 92 ~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Ge 171 (204)
+++||+++++++.+.+++.+ ++.+++.||+||++..+..... ......+++|.|+++++++++| +++++++.|+.||
T Consensus 334 v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Ge 410 (560)
T PRK08751 334 TLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGE 410 (560)
T ss_pred eeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccc-cccccCCCcCccCCCceEEEEC-CCCCCCCCCCceE
Confidence 99999999999999999987 7889999999999876654432 2123456899999999999999 8899999999999
Q ss_pred EEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 172 IWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 172 l~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|+++|+.+++|||++++.+++.|..+|||+|+
T Consensus 411 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TG 442 (560)
T PRK08751 411 LCIKGPQVMKGYWKRPEETAKVMDADGWLHTG 442 (560)
T ss_pred EEEecCccchhhcCChhhhhhccccCCCcccc
Confidence 99999999999999999999888878999997
No 90
>PRK05691 peptide synthase; Validated
Probab=99.96 E-value=4.4e-28 Score=238.98 Aligned_cols=195 Identities=20% Similarity=0.228 Sum_probs=170.7
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
...+++.++|++++..|++|..++.. ++.+|..|+++++.+ ..++..+++.++++++|++.++|++++.+.+...
T Consensus 1306 ~~~~~~~~~d~~l~~~~~~fd~s~~~-~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~- 1383 (4334)
T PRK05691 1306 QATYALDDSDVLMQKAPISFDVSVWE-CFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL- 1383 (4334)
T ss_pred HHhcCCCCCCEEEEeCCccHHHHHHH-HHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc-
Confidence 34578899999999999999998876 889999999999985 3689999999999999999999999999987543
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ 161 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~ 161 (204)
...+++||.+++|||++++++.++|.+.+|+++++|.||+||++..++............++|+|+++++++|+| +++
T Consensus 1384 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~ 1461 (4334)
T PRK05691 1384 -AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AEL 1461 (4334)
T ss_pred -cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCC
Confidence 345789999999999999999999999999999999999999987665432222234456899999999999999 889
Q ss_pred CCCCCCCcceEEEecCCcchhhcCCccccccccch-------hhhcccc
Q 028779 162 KPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-------RKIMHSF 203 (204)
Q Consensus 162 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-------~gw~~~~ 203 (204)
++++.|+.|||+|+|+++++|||++++.|.++|.. ++|||||
T Consensus 1462 ~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1510 (4334)
T PRK05691 1462 NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTG 1510 (4334)
T ss_pred CCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEcc
Confidence 99999999999999999999999999999998853 3599997
No 91
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.95 E-value=1.7e-27 Score=199.04 Aligned_cols=196 Identities=17% Similarity=0.174 Sum_probs=167.9
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 82 (204)
..+.+..+|++++.+|++|..++.. ++.++..|+++++.++ .++..+++.+++++++.+..+|++++.+.......
T Consensus 177 ~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~ 255 (503)
T PRK04813 177 EDFALPEGPQFLNQAPYSFDLSVMD-LYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN 255 (503)
T ss_pred HHcCCCcCceeeecCCcchhHhHHH-HHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC
Confidence 4467788999999999999998876 7789999999998875 48999999999999999999999998877655445
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCC---CCCCCCCCccccCCCceEEEEeCC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
...++++|.++++|+++++.+.+++.+.|++..+++.||+||++......... .......++|+|.++++++|+| +
T Consensus 256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~ 334 (503)
T PRK04813 256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-E 334 (503)
T ss_pred cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-C
Confidence 56788999999999999999999999999889999999999997654432111 1123455799999999999999 8
Q ss_pred CCCCCCCCCcceEEEecCCcchhhcCCccccccccch-h--hhcccc
Q 028779 160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGF-R--KIMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~-~--gw~~~~ 203 (204)
++++++.|+.|||+++|+.++.|||++++.+.+.|.. + +||+||
T Consensus 335 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tG 381 (503)
T PRK04813 335 EGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTG 381 (503)
T ss_pred CCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECC
Confidence 8999999999999999999999999999999887742 3 599997
No 92
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.95 E-value=2.5e-27 Score=199.97 Aligned_cols=191 Identities=22% Similarity=0.282 Sum_probs=160.4
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..++.+++|++++++|++|.+++.. ++.++..|+++++.+ .+++..+++.++++++|++.++|+++..+++.......
T Consensus 212 ~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~ 290 (539)
T PRK07008 212 DAMGLSARDAVLPVVPMFHVNAWGL-PYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGL 290 (539)
T ss_pred cccCCCCCceEEecCchHHhhhHHH-HHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCC
Confidence 3567788999999999999988766 678889999999874 57999999999999999999999999999987665667
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---------CCCCCCCccccCCCceEEE
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---------GSRNIGSAGALAPGVEALI 155 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~~~v~v 155 (204)
+++++|.++++|+++++++.+++.+.+ +..+++.||+||++..++...... ......++|+|+|+++++|
T Consensus 291 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i 369 (539)
T PRK07008 291 RFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKI 369 (539)
T ss_pred CcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEE
Confidence 788999999999999999999999988 789999999999987554322110 0112357899999999999
Q ss_pred EeCCCCCCCCCC--CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 156 VSVDTQKPLPPN--QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 156 ~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+| +++++++.+ +.|||+++|+.++.|||++++ +.+. +|||+|+
T Consensus 370 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~-~g~~~TG 414 (539)
T PRK07008 370 VG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLV-DGWFPTG 414 (539)
T ss_pred EC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhc-CCCcccC
Confidence 99 778888653 579999999999999999883 3454 7999997
No 93
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.95 E-value=6.3e-27 Score=198.36 Aligned_cols=189 Identities=26% Similarity=0.385 Sum_probs=164.6
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccc
Q 028779 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL 89 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l 89 (204)
..+++++.++|++|++++....+..+..|+++++.. ..++..+++.++++++|.+.++|++++.|.+.......+++++
T Consensus 248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l 327 (560)
T PRK08974 248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSL 327 (560)
T ss_pred CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccce
Confidence 446788999999999998776777888999877764 5688999999999999999999999999988765556677899
Q ss_pred eeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCc
Q 028779 90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL 169 (204)
Q Consensus 90 r~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~ 169 (204)
|.++++|+++++.+.++|++.+ ++++++.||+||++..+....... .....++|.|+|+++++++| ++++++++|+.
T Consensus 328 r~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~ 404 (560)
T PRK08974 328 KLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDL-DYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEP 404 (560)
T ss_pred eEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCC-cccCCccccCcCCCEEEEEC-CCCCCCCCCCc
Confidence 9999999999999999999987 789999999999987766543322 34467899999999999999 67899999999
Q ss_pred ceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 170 GEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 170 Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|||+++|+.++.||+++++.+++.|. +|||+|+
T Consensus 405 Gel~v~g~~~~~gy~~~~~~~~~~~~-~g~~~TG 437 (560)
T PRK08974 405 GELWVKGPQVMLGYWQRPEATDEVIK-DGWLATG 437 (560)
T ss_pred eEEEEecCCcchhhcCChhhhhhhhh-cCCcccC
Confidence 99999999999999999999988885 8999997
No 94
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.95 E-value=8.3e-27 Score=198.29 Aligned_cols=193 Identities=20% Similarity=0.254 Sum_probs=159.7
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
.+++.++|++++.+|++|.+++.. .+.++..|+++++.+ .+++..+++.++++++|.++++|+++..++........+
T Consensus 218 ~~~~~~~~~~l~~~pl~h~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 296 (576)
T PRK05620 218 SLAVTHGESFLCCVPIYHVLSWGV-PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPE 296 (576)
T ss_pred hcCCCCCCeEEEeCChHHhhhhHH-HHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcc
Confidence 467888999999999999999877 788899999998875 579999999999999999999999999887653323334
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC------CCCCCCccccCCCceEEEEeCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG------SRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~------~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
..++|.++++|+++++.+.+++++.+ ++++++.||+||++..+........ .....++|++.++++++++| +
T Consensus 297 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~ 374 (576)
T PRK05620 297 RMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D 374 (576)
T ss_pred cCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C
Confidence 46899999999999999999999988 6899999999999876654322110 11234789999999999999 5
Q ss_pred CCCCCC--CCCcceEEEecCCcchhhcCCcccc----------------ccccchhhhcccc
Q 028779 160 TQKPLP--PNQLGEIWLRGPNMMRGIMLIASII----------------LSSWGFRKIMHSF 203 (204)
Q Consensus 160 ~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t----------------~~~~~~~gw~~~~ 203 (204)
++.++ +++.|||+++|++++.|||++++.+ .+++..+|||+||
T Consensus 375 -g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TG 435 (576)
T PRK05620 375 -GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTG 435 (576)
T ss_pred -CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecC
Confidence 66664 4789999999999999999999887 3345567999997
No 95
>PRK05691 peptide synthase; Validated
Probab=99.95 E-value=4e-27 Score=232.26 Aligned_cols=194 Identities=13% Similarity=0.118 Sum_probs=170.3
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
...++++++|+++...+++|+.++.. ++.+|..|+++++.+. .++..+++.++++++|++..+|++++.+++..
T Consensus 3902 ~~~~~~~~~~~~~~~~s~~fd~s~~~-~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~-- 3978 (4334)
T PRK05691 3902 VPYLALSEADVIAQTASQSFDISVWQ-FLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED-- 3978 (4334)
T ss_pred HHhcCCCccceEEEecCCchhHHHHH-HHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc--
Confidence 45678999999999999999999988 8899999999999864 58999999999999999999999999887642
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC--CCCCCCccccCCCceEEEEeCC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG--SRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~--~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
...+++||.+++|||++++++.++|.+.+++++++|.||+||++..++....... .....++|+|++++++.|+| +
T Consensus 3979 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~ 4056 (4334)
T PRK05691 3979 -RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-E 4056 (4334)
T ss_pred -cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-C
Confidence 3346799999999999999999999999999999999999999886654332221 22345799999999999999 8
Q ss_pred CCCCCCCCCcceEEEecCCcchhhcCCccccccccc-------hhhhcccc
Q 028779 160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG-------FRKIMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~-------~~gw~~~~ 203 (204)
.+++++.|..|||+|+|+.+++|||++|+.|+++|. .++|||||
T Consensus 4057 ~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTG 4107 (4334)
T PRK05691 4057 ALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTG 4107 (4334)
T ss_pred CCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccC
Confidence 999999999999999999999999999999999995 25799997
No 96
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.95 E-value=2e-26 Score=194.15 Aligned_cols=189 Identities=23% Similarity=0.232 Sum_probs=158.9
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
...++++++|++++.+|++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+.+..++........
T Consensus 185 ~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~ 264 (529)
T PRK07867 185 AQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDD 264 (529)
T ss_pred HHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccc
Confidence 34567889999999999999999988777899999999999989999999999999999999999999999876543333
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
..+++|. ++||+.+++.. +++.+.+ ++++++.||+||++....... ....+++|.|+++ ++++|+++++++
T Consensus 265 ~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~~ 335 (529)
T PRK07867 265 ADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTEC 335 (529)
T ss_pred cccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCCC
Confidence 3457874 56888887764 6777777 789999999999986544321 1345679999998 778888889999
Q ss_pred CCCC------------cceEEE-ecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQ------------LGEIWL-RGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~------------~Gel~v-~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.|+ .|||++ +|++++.|||++++.+.+.|. +|||+||
T Consensus 336 ~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~-~g~~~TG 386 (529)
T PRK07867 336 PPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR-GGVYWSG 386 (529)
T ss_pred CCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhc-CCeEeec
Confidence 9888 999999 999999999999999998887 8999997
No 97
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.94 E-value=6.8e-26 Score=191.41 Aligned_cols=191 Identities=20% Similarity=0.274 Sum_probs=159.2
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
..++++.+|+++..+|++|.+++.. .+.++..|+++++.. .+++..+++.++++++|.+.++|+++..+++.......
T Consensus 213 ~~~~~~~~d~~~~~~p~~h~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~ 291 (542)
T PRK06018 213 DALGTSAADTMLPVVPLFHANSWGI-AFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGL 291 (542)
T ss_pred hhcCCCCCCEEEEecCHHHHhhhHH-HHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCC
Confidence 3567889999999999999999877 567889999998874 57899999999999999999999999999877655556
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC---------CCCCCCccccCCCceEEE
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEALI 155 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~v~v 155 (204)
+++++|.++++|+++++++.++|++ + ++++++.||+||++.+.+....... .....++|+|.++++++|
T Consensus 292 ~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v 369 (542)
T PRK06018 292 KLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKI 369 (542)
T ss_pred CcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEE
Confidence 7789999999999999999999999 6 8999999999999877654321110 112357899999999999
Q ss_pred EeCCCCCCCCCC--CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 156 VSVDTQKPLPPN--QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 156 ~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+| +++++++.+ ..|||+++|++++.|||++ +.+.++.+|||+|+
T Consensus 370 ~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TG 415 (542)
T PRK06018 370 TD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTG 415 (542)
T ss_pred EC-CCCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEEcC
Confidence 99 778887653 6799999999999999983 23445568999997
No 98
>PRK13388 acyl-CoA synthetase; Provisional
Probab=99.94 E-value=5.2e-26 Score=192.06 Aligned_cols=190 Identities=19% Similarity=0.190 Sum_probs=154.9
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
...++++++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++..+|+.+..+++.+.....
T Consensus 183 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~ 262 (540)
T PRK13388 183 TERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDD 262 (540)
T ss_pred HHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccc
Confidence 34577889999999999999999887666789999999998889999999999999999999999999999876543323
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEE----------
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEAL---------- 154 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~---------- 154 (204)
...++|.+ + |+++++...+++.+.+ +.++++.||+||++.++.... ....+++|+|++++++.
T Consensus 263 ~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~~ 335 (540)
T PRK13388 263 ADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECAV 335 (540)
T ss_pred cccceEEE-E-CCCCCHHHHHHHHHHh-CCceecccccccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCccccc
Confidence 33466643 3 6677888889998888 789999999999987665432 13457899999997652
Q ss_pred -EEeCCCCCCC-CCCCcceEEEe-cCCcchhhcCCccccccccchhhhcccc
Q 028779 155 -IVSVDTQKPL-PPNQLGEIWLR-GPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 155 -v~d~~~~~~~-~~g~~Gel~v~-g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++| ++|+++ ++++.|||+++ |+.++.|||++++.+++.|. +|||+||
T Consensus 336 ~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~-~g~~~TG 385 (540)
T PRK13388 336 ARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR-HGMYWSG 385 (540)
T ss_pred eecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHhh-cCceecc
Confidence 344 555555 44679999998 99999999999999999886 7999997
No 99
>PLN02479 acetate-CoA ligase
Probab=99.94 E-value=7.6e-26 Score=192.08 Aligned_cols=193 Identities=23% Similarity=0.275 Sum_probs=154.7
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC-CC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-FD 85 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-~~ 85 (204)
.++++.+|++++.+|++|++++...++..+..|.+++ ...+++..+++.++++++|++..+|+++..|.+...... .+
T Consensus 230 ~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 308 (567)
T PLN02479 230 IWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILP 308 (567)
T ss_pred hcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccccc
Confidence 4667889999999999999998774444566665554 467899999999999999999999999999987643332 25
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCC---------CCCCCCCCCccccCCCce-EEE
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---------FAGSRNIGSAGALAPGVE-ALI 155 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~---------~~~~~~~~~~G~p~~~~~-v~v 155 (204)
++++|.++++|+++++.+.+++.+. +.++++.||+||+++.++.... ........+.|.+.+++. +++
T Consensus 309 ~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i 386 (567)
T PLN02479 309 LPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV 386 (567)
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeE
Confidence 6899999999999999999999875 6899999999998654332210 000111235788888876 889
Q ss_pred EeCCCCCCCCCC--CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 156 VSVDTQKPLPPN--QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 156 ~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+|++++++++.+ +.|||+++|+.++.|||++++.|++.|. +|||+||
T Consensus 387 ~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TG 435 (567)
T PLN02479 387 VDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA-NGWFHSG 435 (567)
T ss_pred EcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc-CCceecc
Confidence 997788888764 6799999999999999999999999997 8999997
No 100
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.94 E-value=9.7e-26 Score=194.38 Aligned_cols=193 Identities=17% Similarity=0.123 Sum_probs=156.9
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~- 80 (204)
..++++++|++++..++.|+... .++.+|..|+++++.+. .++..+++.++++++|++..+|++++.+.+...
T Consensus 298 ~~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 375 (655)
T PRK03584 298 LHCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV 375 (655)
T ss_pred HhcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC
Confidence 45678899999999999998553 36689999999999752 589999999999999999999999999986532
Q ss_pred -CCCCCCccceeeeecCCCCCHHHHHHHHHhC-CCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeC
Q 028779 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNV-PSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV 158 (204)
Q Consensus 81 -~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~-~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~ 158 (204)
....++++||.++++|+++++++.+++.+.+ +++.+.+.||+||++......... .....+++|.|.++++++|+|
T Consensus 376 ~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~~~ivd- 453 (655)
T PRK03584 376 PGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPL-LPVYRGEIQCRGLGMAVEAWD- 453 (655)
T ss_pred ccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCC-CCcCCCccCCCcCCceeEEEC-
Confidence 2345788999999999999999999999998 468899999999986543322211 124567899999999999999
Q ss_pred CCCCCCCCCCcceEEEecC--CcchhhcCCccccc--ccc-c-hhhhcccc
Q 028779 159 DTQKPLPPNQLGEIWLRGP--NMMRGIMLIASIIL--SSW-G-FRKIMHSF 203 (204)
Q Consensus 159 ~~~~~~~~g~~Gel~v~g~--~~~~gY~~~~~~t~--~~~-~-~~gw~~~~ 203 (204)
++|+++ .|+.|||+++|| +++.|||++++.++ +.+ . .+|||+||
T Consensus 454 ~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TG 503 (655)
T PRK03584 454 EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHG 503 (655)
T ss_pred CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecC
Confidence 788888 899999999996 79999999998654 222 1 25788886
No 101
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.94 E-value=3.4e-26 Score=194.55 Aligned_cols=192 Identities=18% Similarity=0.269 Sum_probs=149.3
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHH-HHhC---CCC
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILA-LAKH---GLV 81 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~-l~~~---~~~ 81 (204)
...+|++++++|++|.+++...++.+++.|+++++.+. .++..+++.+++++++.. .+|+++.. +.+. ...
T Consensus 204 ~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~ 282 (578)
T PRK05850 204 PPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDM 282 (578)
T ss_pred CCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhh
Confidence 35688999999999999998878999999999999864 279999999999999855 56665443 3321 112
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhCC-----CCcEEcccccccccccccccCCCCC-------------------
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG------------------- 137 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~------------------- 137 (204)
...+++++|.++.||+++++++.+++.+.|+ +..+++.||+||++...........
T Consensus 283 ~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (578)
T PRK05850 283 AGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRC 362 (578)
T ss_pred cCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEec
Confidence 2345789999999999999999999998873 3578999999998754433211100
Q ss_pred ----CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccc-----------hhhhccc
Q 028779 138 ----SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG-----------FRKIMHS 202 (204)
Q Consensus 138 ----~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~-----------~~gw~~~ 202 (204)
.....++|.|. +++++++|++++++++.|+.|||+++|+.++.|||++++.|++.|. .+|||+|
T Consensus 363 ~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~T 441 (578)
T PRK05850 363 ETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRT 441 (578)
T ss_pred CCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeec
Confidence 00112345554 5789999988889999999999999999999999999999999885 2579999
Q ss_pred c
Q 028779 203 F 203 (204)
Q Consensus 203 ~ 203 (204)
|
T Consensus 442 G 442 (578)
T PRK05850 442 G 442 (578)
T ss_pred c
Confidence 7
No 102
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.94 E-value=1.6e-25 Score=203.28 Aligned_cols=189 Identities=21% Similarity=0.320 Sum_probs=157.8
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 83 (204)
...++.+++|++++.+|++|.+++...++.++..|+++++.+. .+...+.+.++++++|++..+|++++.+.+.. ..
T Consensus 826 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~ 903 (1140)
T PRK06814 826 AARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HP 903 (1140)
T ss_pred HHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--cc
Confidence 3456788999999999999999997768889999999998864 57788899999999999999999999987753 34
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~ 163 (204)
.+++++|.+++||+++++++.+++++.+ +.++++.||+||++......... ..+.+++|+|+|++++++++ .++
T Consensus 904 ~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~-~~~-- 977 (1140)
T PRK06814 904 YDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEP-VPG-- 977 (1140)
T ss_pred ccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCCC--CCCCCcCCccCCCCeEEEee-cCC--
Confidence 5678999999999999999999999998 78999999999998776554322 24567899999999999987 432
Q ss_pred CCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.++.|||+++|++++.|||++++.+......+||||||
T Consensus 978 --~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG 1015 (1140)
T PRK06814 978 --IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTG 1015 (1140)
T ss_pred --CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecC
Confidence 36789999999999999998775443222248999997
No 103
>PLN03102 acyl-activating enzyme; Provisional
Probab=99.94 E-value=1.5e-25 Score=190.65 Aligned_cols=190 Identities=23% Similarity=0.318 Sum_probs=151.0
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~ 87 (204)
+.....+++++.+|++|.+++.. .+.++..|+++++.+++++..+++.|+++++|++.++|+++..|.+.........+
T Consensus 222 ~~~~~~~~~l~~~pl~h~~g~~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 300 (579)
T PLN03102 222 WEMGTCPVYLWTLPMFHCNGWTF-TWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRS 300 (579)
T ss_pred cCCCCCCeEEecCChhhhcchhH-HHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcc
Confidence 44566789999999999999887 67788899999999888999999999999999999999999999886543444456
Q ss_pred cceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCC------------CCCCCCccccCCCceEEE
Q 028779 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG------------SRNIGSAGALAPGVEALI 155 (204)
Q Consensus 88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~------------~~~~~~~G~p~~~~~v~v 155 (204)
+++.++++|+++++.+.+++++ + +.++++.||+||+++.++....... ....+..+.+++ .+++
T Consensus 301 ~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i 376 (579)
T PLN03102 301 GPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDV 376 (579)
T ss_pred cceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEE
Confidence 7888999999999999999876 4 7899999999999865433211100 011222333444 4566
Q ss_pred EeCCCCCCCCC--CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 156 VSVDTQKPLPP--NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 156 ~d~~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+|++++++++. ++.|||+++|+.++.|||++++.+++.|. +|||+|+
T Consensus 377 ~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-~gw~~TG 425 (579)
T PLN03102 377 KNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-HGWLNTG 425 (579)
T ss_pred eccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhc-cCceecC
Confidence 77667777765 36899999999999999999999999997 7999997
No 104
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.93 E-value=2.1e-25 Score=183.45 Aligned_cols=182 Identities=25% Similarity=0.340 Sum_probs=151.8
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
...++++++|++++.+|++|++++.. ++.++..|+++++.+.++ .+++.++++++|++.++|+++..+++....
T Consensus 144 ~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~--- 217 (436)
T TIGR01923 144 KENLGFTEDDNWLLSLPLYHISGLSI-LFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLNRLLDEGGH--- 217 (436)
T ss_pred HhhcCCCCCceEEEccCcHhHHHHHH-HHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHHHHHhCcCC---
Confidence 44578899999999999999999876 889999999999987653 899999999999999999999999886532
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
.+++|.++++|+++++++.+++++. ++.+++.||+||++........... ....++|.|++++++++.+.+.
T Consensus 218 -~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~-~~~~~~G~~~~~~~~~i~~~~~---- 289 (436)
T TIGR01923 218 -NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEML-HARPDVGRPLAGREIKIKVDNK---- 289 (436)
T ss_pred -CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcccc-ccccCCCccCCCcEEEEEeCCC----
Confidence 2689999999999999999998775 8999999999999887665433322 2223599999999999944132
Q ss_pred CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
++.|||+++|+.++.|||++++.+...+. +|||+|+
T Consensus 290 --~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TG 325 (436)
T TIGR01923 290 --EGHGEIMVKGANLMKGYLYQGELTPAFEQ-QGWFNTG 325 (436)
T ss_pred --CCceEEEEECCccchhhCCChhhhhhhhc-CCCeecc
Confidence 27799999999999999998888776655 7999997
No 105
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.93 E-value=9.3e-26 Score=191.99 Aligned_cols=195 Identities=20% Similarity=0.262 Sum_probs=156.9
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCC---
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--- 79 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--- 79 (204)
.++++++|+++.++|++|.+++...++.++..|+++++.+. .++..+++.+.++++++++..|..+..+....
T Consensus 212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~ 291 (579)
T PRK09192 212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK 291 (579)
T ss_pred cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence 67888999999999999999998878888999999977652 37899999999999998776555454444322
Q ss_pred CCCCCCCccceeeeecCCCCCHHHHHHHHHhCCC-----CcEEcccccccccccccccCCCCC-----------------
Q 028779 80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-----ATVIQGYGLTETSGIATMENSFAG----------------- 137 (204)
Q Consensus 80 ~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~~~----------------- 137 (204)
.....+++++|.++++|+++++.+.+++.+.++. ..+++.||+||++...........
T Consensus 292 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (579)
T PRK09192 292 DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKA 371 (579)
T ss_pred cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCcee
Confidence 1233567899999999999999999999988732 358999999999765544322110
Q ss_pred ---------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 138 ---------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 138 ---------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.....++|+|+|+++++|+| ++++.++.|+.|||+++|++++.|||++ +.+.+.+..+|||+|+
T Consensus 372 ~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TG 444 (579)
T PRK09192 372 VAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTG 444 (579)
T ss_pred eccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeecc
Confidence 01124789999999999999 7789999999999999999999999999 6777778779999997
No 106
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.93 E-value=5.9e-25 Score=196.50 Aligned_cols=187 Identities=18% Similarity=0.225 Sum_probs=147.5
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++++++|++++.+|++|++++...++.++..|+++++.+++++..+++.|+++++|+++++|++++.|++.+.....+
T Consensus 639 ~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~ 718 (994)
T PRK07868 639 SAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHG 718 (994)
T ss_pred hhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCC
Confidence 34678899999999999999999886667777777777778899999999999999999999999999999875544456
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCc-eEEEE--eC----
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGV-EALIV--SV---- 158 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~-~v~v~--d~---- 158 (204)
+++||.++ |+.+++++.+++.+.|+++++++.||+||++...... . ..+.+++|+|+|++ +++|. |+
T Consensus 719 ~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~--~--~~~~~svG~p~pg~~~v~i~~~d~~~g~ 792 (994)
T PRK07868 719 NHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV--S--GAKIGSKGRPLPGAGRVELAAYDPEHDL 792 (994)
T ss_pred CCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc--C--CCCCcccCCccCCCCceeEEEecCcCCc
Confidence 77899776 3459999999999999878999999999987554321 1 23567899999997 66654 21
Q ss_pred ----CCC--CCCCCCCcceEEEecCCcchhhcCCccccc--cccc-hhhhcccc
Q 028779 159 ----DTQ--KPLPPNQLGEIWLRGPNMMRGIMLIASIIL--SSWG-FRKIMHSF 203 (204)
Q Consensus 159 ----~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~--~~~~-~~gw~~~~ 203 (204)
++| +.++.|+.|||+++++.. ++ ++++. ..|. .+||||||
T Consensus 793 li~d~~G~~~~~~~ge~Gel~~~~~~~----~~-p~~t~~~~~~~~~dgw~~TG 841 (994)
T PRK07868 793 ILEDDRGFVRRAEVNEVGVLLARARGP----ID-PTASVKRGVFAPADTWISTE 841 (994)
T ss_pred eeecCCceEEEcCCCCceEEEEecCCC----CC-hhhhhHhcccccCCEEEecc
Confidence 445 567889999999999853 33 44332 2343 37999997
No 107
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.93 E-value=5.8e-25 Score=189.41 Aligned_cols=192 Identities=15% Similarity=0.102 Sum_probs=151.6
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCC--C
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--L 80 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~ 80 (204)
.++++++|++++..|+.|+... .++.+|..|+++++.+. .++..+++.++++++|++..+|++++.+.+.. .
T Consensus 300 ~~~~~~~d~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~ 377 (652)
T TIGR01217 300 HCDLGPGDRLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHP 377 (652)
T ss_pred ccCCCCCcEEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCc
Confidence 4678899999999999998542 25589999999999852 37899999999999999988888887776532 1
Q ss_pred CCCCCCccceeeeecCCCCCHHHHHHHHHhCC-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCC
Q 028779 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
....++++||.++++|+++++++.+++.+.++ +..+.+.||+||+++........ .....+++|.|.++++++|+| +
T Consensus 378 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~ivd-~ 455 (652)
T TIGR01217 378 ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPT-LPVHIGEIQAPGLGTAVQSWD-P 455 (652)
T ss_pred cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCC-CCCcCCccCCCcCCCceEEEC-C
Confidence 23467899999999999999999999999874 35677899999975433322111 123457889999999999999 7
Q ss_pred CCCCCCCCCcceEEEecC--CcchhhcCCccccc--cc-cc-hhhhcccc
Q 028779 160 TQKPLPPNQLGEIWLRGP--NMMRGIMLIASIIL--SS-WG-FRKIMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~--~~~~gY~~~~~~t~--~~-~~-~~gw~~~~ 203 (204)
+|+++ +|+.|||+++|| +++.|||++++.++ +. |. .+|||+||
T Consensus 456 ~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tG 504 (652)
T TIGR01217 456 EGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHG 504 (652)
T ss_pred CCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcC
Confidence 88888 599999999996 68999999998664 22 22 36888876
No 108
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.93 E-value=1.2e-24 Score=189.07 Aligned_cols=192 Identities=15% Similarity=0.118 Sum_probs=155.5
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
++++++|++++..|++|+++... ++++|..|+++++.++ .++..+++.++++++|++..+|++++.|.+.......++
T Consensus 392 ~~l~~~d~~~~~~~l~w~~g~~~-v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dl 470 (728)
T PLN03052 392 LDIRKGDIVCWPTNLGWMMGPWL-VYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDW 470 (728)
T ss_pred cCCCCCcEEEECCCcHHHhHHHH-HHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCCh
Confidence 57889999999999999999866 7899999999999874 567789999999999999999999999988765566788
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 166 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~ 166 (204)
++||.++++|++++++..+++.+.++..++.+.||+||+++......... ....+++|.|.++++++|+| ++|++++.
T Consensus 471 ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~v~v~d-~~g~~v~~ 548 (728)
T PLN03052 471 SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQ-PQAFAAFSTPAMGCKLFILD-DSGNPYPD 548 (728)
T ss_pred hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCC-CCCCCccccCCCCceEEEEC-CCCCCCCC
Confidence 99999999999999999998888875568999999999976544322211 23467899999999999999 88999998
Q ss_pred CC--cceEEEecC--CcchhhcCCccccccccc------hhhhcccc
Q 028779 167 NQ--LGEIWLRGP--NMMRGIMLIASIILSSWG------FRKIMHSF 203 (204)
Q Consensus 167 g~--~Gel~v~g~--~~~~gY~~~~~~t~~~~~------~~gw~~~~ 203 (204)
|+ .|||+++++ +...+||+++. +..-|. .+.|++||
T Consensus 549 g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tG 594 (728)
T PLN03052 549 DAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHG 594 (728)
T ss_pred CCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecC
Confidence 85 599999875 34457777643 222221 12388886
No 109
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.92 E-value=1.5e-24 Score=183.33 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=154.5
Q ss_pred cccCCCC-cEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhC---
Q 028779 7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKH--- 78 (204)
Q Consensus 7 ~~~~~~~-d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~--- 78 (204)
.+++.++ |++++++|++|..++...++.++..|+++++.+. .++..+++.+++++++++..+|..+..+.+.
T Consensus 187 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 266 (545)
T PRK07768 187 AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRR 266 (545)
T ss_pred hcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhc
Confidence 3556665 8999999999999998777788999999988754 2788899999999999988777777666542
Q ss_pred -CCCCCCCCccceeeeecCCCCCHHHHHHHHHh---C--CCCcEEcccccccccccccccCCCCC---------------
Q 028779 79 -GLVKKFDLSSLKLVGSGAAPLGKELMEECAKN---V--PSATVIQGYGLTETSGIATMENSFAG--------------- 137 (204)
Q Consensus 79 -~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~---~--~~~~~~~~yG~tE~~~~~~~~~~~~~--------------- 137 (204)
......+++++|.++.+|+++++++.+++.+. + +...+++.||+||++..+........
T Consensus 267 ~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (545)
T PRK07768 267 QAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALR 346 (545)
T ss_pred cccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccC
Confidence 11224667899999999999999999999874 4 22359999999999876544322110
Q ss_pred ---------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 138 ---------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 138 ---------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.....++|+|+++++++++| ++++++++|+.|||+++|+.+++|||+++.... .+..+|||+|+
T Consensus 347 ~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TG 419 (545)
T PRK07768 347 RAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGYLTMDGFIP-AQDADGWLDTG 419 (545)
T ss_pred ceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccccCCCCCcc-cccCCCeeecc
Confidence 11345799999999999999 888999999999999999999999998654443 34447999997
No 110
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.92 E-value=3.8e-24 Score=180.78 Aligned_cols=193 Identities=21% Similarity=0.249 Sum_probs=152.0
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
.+.+..+|++++.+|++|.+++...++..+ .|++.++...+++..+++.++++++|++.++|+++..|++........+
T Consensus 217 ~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 295 (545)
T PRK08162 217 AWGMPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGI 295 (545)
T ss_pred hcCCCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCC
Confidence 456778899999999999999877444444 5666666677899999999999999999999999999998755444455
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCC---------CCCCCCCccccCCC-ceEEEE
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---------GSRNIGSAGALAPG-VEALIV 156 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~-~~v~v~ 156 (204)
.+.+.++++|+++++++.+++++. ++++++.||+||+++.+....... ......+.|.+.+. ..++++
T Consensus 296 ~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 373 (545)
T PRK08162 296 DHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVL 373 (545)
T ss_pred ccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEE
Confidence 667778899999999999998875 789999999999865443321110 01123456776653 358889
Q ss_pred eCCCCCCCCC-C-CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 157 SVDTQKPLPP-N-QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 157 d~~~~~~~~~-g-~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|++++++++. | +.|||+++|+.++.|||++++.+.+.|. +|||+||
T Consensus 374 d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TG 421 (545)
T PRK08162 374 DPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA-GGWFHTG 421 (545)
T ss_pred cCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhh-CCCcccC
Confidence 9778888876 3 4699999999999999999999999887 7999997
No 111
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.92 E-value=1.6e-24 Score=179.32 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=136.0
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCc
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~ 87 (204)
+++.+ ++.++++|++|.+|+.. ++.++..|+++++.+..+.........++++++++++|++++.+++. ....++
T Consensus 156 ~~~~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~---~~~~l~ 230 (452)
T PRK07445 156 FQLQQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQL---RPQWLA 230 (452)
T ss_pred hcCCC-CceEeccCchhhhhHHH-HHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhh---Chhhhh
Confidence 44544 46789999999999976 78899999999998743222223344578999999999999999863 234578
Q ss_pred cceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCC
Q 028779 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167 (204)
Q Consensus 88 ~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g 167 (204)
++|.+++||+++++++.+++.+. ++++++.||+||++.......+.+......++|+|+|+++++|+ .|
T Consensus 231 ~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~g 299 (452)
T PRK07445 231 QFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------AN 299 (452)
T ss_pred cceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------CC
Confidence 99999999999999999988763 78999999999997655433222212345689999999999997 36
Q ss_pred CcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 168 QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 168 ~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+.|||+++|++++.|||+++. ..+|||+|+
T Consensus 300 ~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TG 329 (452)
T PRK07445 300 QTGNITIQAQSLALGYYPQIL------DSQGIFETD 329 (452)
T ss_pred CcceEEEeCCccchhhcCCcc------CCCCEEECC
Confidence 779999999999999998543 237899997
No 112
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=99.92 E-value=5.5e-24 Score=181.84 Aligned_cols=191 Identities=16% Similarity=0.125 Sum_probs=151.6
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
...++++++|++++.+|++|.+++...+++++..|+++++.+.+++..+++.++++++|++.++|++++.+++.......
T Consensus 232 ~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~ 311 (600)
T PRK08279 232 GGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD 311 (600)
T ss_pred HHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccc
Confidence 34478899999999999999999998788889999999999999999999999999999999999999999887554444
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCC----CceEEEEeC--
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAP----GVEALIVSV-- 158 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~----~~~v~v~d~-- 158 (204)
...++|.+ +|+.+++++++++.+.|+...+++.||+||++...... ....+++|.+.+ +..+...|+
T Consensus 312 ~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~ 384 (600)
T PRK08279 312 RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDT 384 (600)
T ss_pred cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-----CCCCcccccccccccccceeeeeccCc
Confidence 55677764 47789999999999999766799999999987543321 123456776655 333322222
Q ss_pred ------CCC--CCCCCCCcceEE--EecCCcchhhcCCccccccccc------hhhhcccc
Q 028779 159 ------DTQ--KPLPPNQLGEIW--LRGPNMMRGIMLIASIILSSWG------FRKIMHSF 203 (204)
Q Consensus 159 ------~~~--~~~~~g~~Gel~--v~g~~~~~gY~~~~~~t~~~~~------~~gw~~~~ 203 (204)
.++ .++++|+.|||+ ++++.++.|| ++++.+++.|. .++||+||
T Consensus 385 ~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TG 444 (600)
T PRK08279 385 GEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTG 444 (600)
T ss_pred CceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeec
Confidence 222 357889999998 7899999999 88888887763 35899997
No 113
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=99.92 E-value=3.8e-25 Score=178.36 Aligned_cols=191 Identities=22% Similarity=0.236 Sum_probs=155.4
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCC--------HHHHHHHHHhcCceEEEechHHHHHHHhCC-
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD--------LEMFLRAIEKHRVTHIWVVPPLILALAKHG- 79 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~- 79 (204)
.+.+.|+++..+||.|++.+.. -+.+++-|+++=..+..+ ...--..+...++|++.++|..+.+.-+.-
T Consensus 275 ~lg~~D~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl 353 (678)
T KOG1180|consen 275 ELGPKDRYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVL 353 (678)
T ss_pred ccCCCceEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHH
Confidence 6788999999999999999999 678899999988775421 111123456788999999999887764320
Q ss_pred ----C-------------------C--CC----------------CCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEc
Q 028779 80 ----L-------------------V--KK----------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118 (204)
Q Consensus 80 ----~-------------------~--~~----------------~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~ 118 (204)
. . .. ..--+||.+++||+|++++..+++.-.+ .+++.+
T Consensus 354 ~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~q 432 (678)
T KOG1180|consen 354 SKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQ 432 (678)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccc
Confidence 0 0 00 0013899999999999999999999988 679999
Q ss_pred ccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCC--cceEEEecCCcchhhcCCccccccccch
Q 028779 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ--LGEIWLRGPNMMRGIMLIASIILSSWGF 196 (204)
Q Consensus 119 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~--~Gel~v~g~~~~~gY~~~~~~t~~~~~~ 196 (204)
.||.||+++.++...+.+ ...+.+|.|++.++++++|-+.+.-...+. .|||+++|+.+..||++++++|++.|..
T Consensus 433 GYGLTEtca~~tv~e~~d--~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~ 510 (678)
T KOG1180|consen 433 GYGLTETCAAATVLEPED--FSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTV 510 (678)
T ss_pred cccccchhcccEecChhh--cccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhcee
Confidence 999999998888776655 566799999999999999977776555555 7999999999999999999999999996
Q ss_pred -hh--hcccc
Q 028779 197 -RK--IMHSF 203 (204)
Q Consensus 197 -~g--w~~~~ 203 (204)
+| ||+||
T Consensus 511 ~~G~~WF~TG 520 (678)
T KOG1180|consen 511 EDGQRWFRTG 520 (678)
T ss_pred cCCcEEEecc
Confidence 99 99997
No 114
>PRK07798 acyl-CoA synthetase; Validated
Probab=99.92 E-value=2.4e-23 Score=175.02 Aligned_cols=186 Identities=20% Similarity=0.230 Sum_probs=152.5
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHH-HHHhCCC-CCCCCC
Q 028779 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGL-VKKFDL 86 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~-~l~~~~~-~~~~~l 86 (204)
..+++++..+|++|.+++.. ++.+++.|+++++.+ .+++..+++.++++++|.+.++|..+. .+.+... ....++
T Consensus 217 ~~~~~~~~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~ 295 (533)
T PRK07798 217 GPGMRRFPAPPLMHGAGQWA-AFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDL 295 (533)
T ss_pred CCCceEEEecchhhhhhHHH-HHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCC
Confidence 57799999999999999986 889999999999998 789999999999999999999987654 3333322 234567
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCcc--ccCCCceEEEEeCCCCCCC
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAG--ALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G--~p~~~~~v~v~d~~~~~~~ 164 (204)
+++|.++++|+++++++.+++++.+++..+++.||+||++........ ......| ++.++..++++| ++++++
T Consensus 296 ~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~----~~~~~~g~~~~~~~~~~~i~~-~~~~~~ 370 (533)
T PRK07798 296 SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVA----KGAVHTGGPRFTIGPRTVVLD-EDGNPV 370 (533)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCC----CCCccCCCCccCCCceEEEEC-CCCCCC
Confidence 899999999999999999999999988999999999999765544321 1122334 788999999999 778899
Q ss_pred CCCCc--ceEEEecCCcchhhcCCccccccccch---hhhcccc
Q 028779 165 PPNQL--GEIWLRGPNMMRGIMLIASIILSSWGF---RKIMHSF 203 (204)
Q Consensus 165 ~~g~~--Gel~v~g~~~~~gY~~~~~~t~~~~~~---~gw~~~~ 203 (204)
++|+. |+++ +++.++.|||++++.+++.|.. ++|++||
T Consensus 371 ~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TG 413 (533)
T PRK07798 371 EPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPG 413 (533)
T ss_pred CCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcC
Confidence 99987 6665 5668999999999999888752 4699987
No 115
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=99.91 E-value=5.4e-24 Score=177.30 Aligned_cols=199 Identities=25% Similarity=0.345 Sum_probs=170.7
Q ss_pred ccccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCC-
Q 028779 4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (204)
Q Consensus 4 ~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~- 80 (204)
....++++++|++.+...+.|+.+.....+.+|++|+|+++.+ ++++..+++.+.+|++|+++..|+.++.|.+...
T Consensus 272 ~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~ 351 (626)
T KOG1175|consen 272 SRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQE 351 (626)
T ss_pred cceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccc
Confidence 3556889999999999999999999998999999999999985 3599999999999999999999999998876543
Q ss_pred -CCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCC
Q 028779 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 81 -~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
....++++||.+.++||++.++..+++.+.+...++++.||+||+|..++.........++++.+.|.+++.+.|.| +
T Consensus 352 ~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e 430 (626)
T KOG1175|consen 352 DVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-E 430 (626)
T ss_pred cccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-C
Confidence 33344467999999999999999999999995557999999999999988876665457889999999999999999 7
Q ss_pred CCCCCCCC-CcceEEEec--C-CcchhhcCCccccccccc--hhhhcccc
Q 028779 160 TQKPLPPN-QLGEIWLRG--P-NMMRGIMLIASIILSSWG--FRKIMHSF 203 (204)
Q Consensus 160 ~~~~~~~g-~~Gel~v~g--~-~~~~gY~~~~~~t~~~~~--~~gw~~~~ 203 (204)
+|++++.+ +.|+|+++. | +++++||+|++....+.. +.|++.||
T Consensus 431 ~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tG 480 (626)
T KOG1175|consen 431 NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTG 480 (626)
T ss_pred CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEec
Confidence 99998876 899999998 4 889999999994444322 35666665
No 116
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.90 E-value=8.9e-23 Score=169.11 Aligned_cols=170 Identities=26% Similarity=0.357 Sum_probs=141.4
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
...++..++|+++..+|++|.+++.. ++.+|..|+++++.+. ..+++.+ .++|.+..+|+++..++.....
T Consensus 168 ~~~~~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~--- 238 (458)
T PRK09029 168 LSLMPFTAQDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE--- 238 (458)
T ss_pred hhcCCCCccceEEEecCcHhhhhhHH-HHHHHhCCceEEeCCh---HHHHHHH--hhceeeecChHHHHHHHhcccc---
Confidence 34567888999999999999999876 7788999999998775 4566666 3789999999999999876432
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
..++|.+++||+++++.+.+++.+. +.++++.||+||++........ ....++|+|+++++++++|
T Consensus 239 -~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~------- 304 (458)
T PRK09029 239 -PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD------- 304 (458)
T ss_pred -CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC-------
Confidence 3479999999999999999999764 7899999999999876544322 2235699999999999987
Q ss_pred CCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 165 ~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|||+++|+.++.|||++++.+..... +|||+|+
T Consensus 305 -----gel~v~g~~~~~gY~~~~~~~~~~~~-~~~~~TG 337 (458)
T PRK09029 305 -----GEIWLRGASLALGYWRQGQLVPLVND-EGWFATR 337 (458)
T ss_pred -----CEEEEecCceeeeeecCccccccccC-CCccCCC
Confidence 89999999999999999988765544 7999997
No 117
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.88 E-value=1.4e-21 Score=157.21 Aligned_cols=162 Identities=23% Similarity=0.281 Sum_probs=134.8
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc---CCCCHHHHHHHHHhcC--ceEEEechHHHHHHHhCCCCCCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHR--VTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~---~~~~~~~~~~~i~~~~--~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
..++++..+|++|++++.. ++.++..|+++++. ..+++..+++.+++++ .++...+|..+..++..+. ...++
T Consensus 73 ~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~ 150 (358)
T PRK07824 73 GPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAAL 150 (358)
T ss_pred CCCeEEEECChHHHHHHHH-HHHHHHcCCeEEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCc
Confidence 4578999999999999887 77889999998873 4579999999999998 5666778888887776543 23467
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCC
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 166 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~ 166 (204)
+++|.++++|+++++++.+++.+. ++++++.||+||++..+. ..|.|++++++++.|
T Consensus 151 ~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~------------~~G~~~~g~~v~i~~--------- 207 (358)
T PRK07824 151 AELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETSGGCV------------YDGVPLDGVRVRVED--------- 207 (358)
T ss_pred ccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCccCCCcC------------cCceeCCCCEEEecC---------
Confidence 899999999999999999999864 789999999999865422 258899999999954
Q ss_pred CCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 167 NQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 167 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
|||+++|+.++.|||++++.+ .|..+|||+|+
T Consensus 208 ---Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TG 239 (358)
T PRK07824 208 ---GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTD 239 (358)
T ss_pred ---CEEEEecCccccccCCCcccc--cccCCCceecc
Confidence 999999999999999988754 45567899997
No 118
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=99.87 E-value=2.7e-21 Score=156.66 Aligned_cols=197 Identities=18% Similarity=0.115 Sum_probs=157.5
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
...++++++|+++.++|++|+++.+..+.+++..|+|+++..+|+.+++|+...+|++|++...-.+.+.|++++..+.+
T Consensus 275 ~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e 354 (649)
T KOG1179|consen 275 YYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE 354 (649)
T ss_pred HHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCC-CCccccCCCceEEEEeCCCCC-
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI-GSAGALAPGVEALIVSVDTQK- 162 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~-~~~G~p~~~~~v~v~d~~~~~- 162 (204)
+-..+|.++ |..+.+++++.+.++|+..++.+.||+||......+.+..-..-.. ....+-+.-+++--+|+++++
T Consensus 355 r~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~ 432 (649)
T KOG1179|consen 355 RQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEP 432 (649)
T ss_pred cCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCce
Confidence 778898877 7789999999999999778899999999976655443221111111 112223344555556878887
Q ss_pred ---------CCCCCCcceEEEe--cCCc---chhhcCCccccccccc------hhhhcccc
Q 028779 163 ---------PLPPNQLGEIWLR--GPNM---MRGIMLIASIILSSWG------FRKIMHSF 203 (204)
Q Consensus 163 ---------~~~~g~~Gel~v~--g~~~---~~gY~~~~~~t~~~~~------~~gw~~~~ 203 (204)
+|++||+|.++-+ ...- +.||.+++++|+++.. .|-||+||
T Consensus 433 iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tG 493 (649)
T KOG1179|consen 433 IRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTG 493 (649)
T ss_pred eecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeC
Confidence 4689999987633 3334 8899998888887743 34577776
No 119
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.86 E-value=6.3e-21 Score=156.71 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=126.6
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC--C
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D 85 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--~ 85 (204)
++.+++|++++..++.+..+.....+.++..|++++..+..++..+++.|+++++|++.++|+++..|++....... .
T Consensus 114 ~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~ 193 (422)
T TIGR02155 114 AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA 193 (422)
T ss_pred cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc
Confidence 57889999998877665444443356678889999988777889999999999999999999999998865332222 2
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC--CCceEEEEeCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA--PGVEALIVSVDTQKP 163 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~--~~~~v~v~d~~~~~~ 163 (204)
..++|.++++||++++++.+.+++.| ++++++.||+||+++......... ...|.++ +.+.++|+|++++++
T Consensus 194 ~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd~~~g~~ 267 (422)
T TIGR02155 194 QTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIIDPHTGEV 267 (422)
T ss_pred cCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEECCCCCCC
Confidence 35899999999999999999999999 689999999999853211111000 1123333 357788999889999
Q ss_pred CCCCCcceEEEecC
Q 028779 164 LPPNQLGEIWLRGP 177 (204)
Q Consensus 164 ~~~g~~Gel~v~g~ 177 (204)
+++|+.|||++++.
T Consensus 268 v~~Ge~Gelvvt~~ 281 (422)
T TIGR02155 268 LPDGEEGELVFTTL 281 (422)
T ss_pred CCCCCeeEEEEecC
Confidence 99999999999974
No 120
>PRK08308 acyl-CoA synthetase; Validated
Probab=99.86 E-value=2.6e-20 Score=152.63 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=131.8
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++...+|+++..+|++|++++...++.++..|+++++.+..++..+++.++++++|.++++|+++..+.+....
T Consensus 135 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~---- 210 (414)
T PRK08308 135 EALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG---- 210 (414)
T ss_pred HhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----
Confidence 4567788999999999999999987789999999999999989999999999999999999999999999876432
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~ 165 (204)
..++|.++.+|+++++++.+++++. ..++++.||+||++.++.... .....++|+|+|++++++.+ +
T Consensus 211 ~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~----~~~~~~~G~p~~~~~~~~~~-~------ 277 (414)
T PRK08308 211 TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICPD----MKSHLDLGNPLPHVSVSAGS-D------ 277 (414)
T ss_pred cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecCC----CCCCCccCccCCCeEEEEec-C------
Confidence 1368899999999999999999987 468999999999987554321 23456899999999999876 3
Q ss_pred CCCcceEEEecC
Q 028779 166 PNQLGEIWLRGP 177 (204)
Q Consensus 166 ~g~~Gel~v~g~ 177 (204)
+++.|||++++.
T Consensus 278 ~~~~gel~v~~~ 289 (414)
T PRK08308 278 ENAPEEIVVKMG 289 (414)
T ss_pred CCCCceEEEEcC
Confidence 356799999864
No 121
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=1e-19 Score=156.74 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=164.7
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK 82 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~ 82 (204)
..+..+.+|+++...++.+...... ++.++..|+++++.+. .++..+.+.+.++++|++..+|.++..++......
T Consensus 400 ~~~~~~~~d~~l~~~s~~fD~~~~~-~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~ 478 (642)
T COG1020 400 ARFGLDADDRVLALASLSFDASVFE-IFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAP 478 (642)
T ss_pred HhcCCCcccEEeecCCcccchhHHH-HHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhc
Confidence 4488899999999999998888888 8999999999999974 58999999999999999999999999998763222
Q ss_pred C--CCCccceeeeecCCCCCHHHHHHHHHhCC-CCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCC
Q 028779 83 K--FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD 159 (204)
Q Consensus 83 ~--~~l~~lr~~~~~G~~l~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~ 159 (204)
. .....+|.++++|+.++..+.+++....+ ...+.+.||+||+...+.............++|+|+++.++.|+| +
T Consensus 479 ~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~ 557 (642)
T COG1020 479 DLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-Q 557 (642)
T ss_pred cccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-C
Confidence 2 22235999999999999999999988765 578999999999655554433222212256899999999999999 9
Q ss_pred CCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 160 TQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 160 ~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
.+++++.|..||+++.|.++.+||+++++.|.+.|..+.+++|+
T Consensus 558 ~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tg 601 (642)
T COG1020 558 GLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTG 601 (642)
T ss_pred CCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCC
Confidence 99999999999999999999999999999999999843377776
No 122
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.78 E-value=6.9e-18 Score=139.53 Aligned_cols=159 Identities=21% Similarity=0.121 Sum_probs=123.8
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC--C
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D 85 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~--~ 85 (204)
.+++++|+++...|+.+..+.....++++..|++++.... ....++.|++++++.+.++|+.+..|++....... .
T Consensus 125 ~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~ 202 (445)
T TIGR03335 125 QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA 202 (445)
T ss_pred cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence 4788999999999998877765546677888998765443 34668999999999999999998887754322221 2
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccC--CCceEEEEeCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA--PGVEALIVSVDTQKP 163 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~--~~~~v~v~d~~~~~~ 163 (204)
..++|.++++||++++++.+++++.| ++++++.||+||++. +..+.. ..|..+ +.+.++|+||+++++
T Consensus 203 ~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE~~~-~~~c~~--------~~g~h~~~d~~~vEIvDp~~~~~ 272 (445)
T TIGR03335 203 ESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTEGTM-CGECQA--------VAGLHVPEDLVHLDVYDPRHQRF 272 (445)
T ss_pred cCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhhhhh-eEEecC--------CCCccccCCceEEEEEcCCCCCC
Confidence 36899999999999999999999988 799999999999852 222111 123333 457899999888899
Q ss_pred CCCCCcceEEEecCC
Q 028779 164 LPPNQLGEIWLRGPN 178 (204)
Q Consensus 164 ~~~g~~Gel~v~g~~ 178 (204)
+++|+.|||++++-.
T Consensus 273 vp~Ge~GELvvT~L~ 287 (445)
T TIGR03335 273 LPDGECGRIVLTTLL 287 (445)
T ss_pred CcCCCceEEEEEecC
Confidence 999999999999853
No 123
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.63 E-value=6.3e-15 Score=118.68 Aligned_cols=162 Identities=20% Similarity=0.140 Sum_probs=127.4
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC--CC
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--FD 85 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--~~ 85 (204)
.+...+|++..+..+....|-....+++-..|++++-...-+.+.-++.|.++++|++.++|+.+..|++...... ..
T Consensus 129 ~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~ 208 (438)
T COG1541 129 AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD 208 (438)
T ss_pred ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh
Confidence 5677889888887744444433335566667888887777788999999999999999999999999988755442 33
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccc-cccCCCCCCCCCCCccccCCCceEEEEeCCCCCCC
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA-TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~-~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~ 164 (204)
-.+||.+++|+|+++++..+.+.+.| +++.++.||.||..+.. ..+. ... -.-..-....++++||++++.+
T Consensus 209 ~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~~g~g~~eC~-----~~~-glhi~eD~~~~Ei~dP~t~e~l 281 (438)
T COG1541 209 KLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEGFGPGAGECT-----ERN-GLHIWEDHFIFEIVDPETGEQL 281 (438)
T ss_pred hcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccccCCcccccc-----ccc-CCCcchhhceeeeecCCcCccC
Confidence 35899999999999999999999999 89999999999987664 1111 111 1112236688999999999999
Q ss_pred CCCCcceEEEec
Q 028779 165 PPNQLGEIWLRG 176 (204)
Q Consensus 165 ~~g~~Gel~v~g 176 (204)
++|+.|||+++.
T Consensus 282 ~dge~GelV~T~ 293 (438)
T COG1541 282 PDGERGELVITT 293 (438)
T ss_pred CCCCeeEEEEEe
Confidence 999999999987
No 124
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.62 E-value=6.2e-15 Score=119.72 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=105.5
Q ss_pred cccCC--CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCC
Q 028779 7 ETAGE--LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 7 ~~~~~--~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
.++++ +.|++++++|++|++++...++.++..|+++++.+++++..+++.++.+ +++.++|++++.|.+.. .
T Consensus 130 ~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~ 203 (386)
T TIGR02372 130 ILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y 203 (386)
T ss_pred HhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c
Confidence 34443 3468999999999999877678889999999999889999888888654 78899999999998753 3
Q ss_pred CCccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEE
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALI 155 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v 155 (204)
+++++|. +++|+++++++.+++++. +..++++.||+||++++..... ....|.++|++++++
T Consensus 204 ~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-------~~~~~~~~p~~~~~~ 265 (386)
T TIGR02372 204 RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-------PDDPFRLLPDLACFA 265 (386)
T ss_pred CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-------CCCCcccCCCccccC
Confidence 4667875 678999999999999886 3357899999999987654321 234567888877654
No 125
>PTZ00297 pantothenate kinase; Provisional
Probab=99.50 E-value=1.5e-13 Score=125.61 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=115.9
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCC----CC---
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----LV--- 81 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~--- 81 (204)
...++|++++.+|++|+++... .+.++..|+++.. +++..+++.|+++++|++.++|.++..+.+.- ..
T Consensus 641 ~~~~~D~~Ls~LPLaHI~er~~-~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~ 716 (1452)
T PTZ00297 641 SSFKKHLMVHFTPFAMLFNRVF-VLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSA 716 (1452)
T ss_pred CCCCCCEEEEechHHHHHHHHH-HHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhH
Confidence 3467899999999999999655 7788999999864 57899999999999999999999988764321 00
Q ss_pred -------------------CCCCC----------------ccceeeeecCC--CCCHHHHHHHHHhCCCCcEEccccccc
Q 028779 82 -------------------KKFDL----------------SSLKLVGSGAA--PLGKELMEECAKNVPSATVIQGYGLTE 124 (204)
Q Consensus 82 -------------------~~~~l----------------~~lr~~~~~G~--~l~~~~~~~~~~~~~~~~~~~~yG~tE 124 (204)
.+... .++|.+++||. +++..+.. ..++...||+||
T Consensus 717 ~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~g~glTE 789 (1452)
T PTZ00297 717 VYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCYVPCLRE 789 (1452)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEEecceEE
Confidence 00000 36888888763 44433322 356788999999
Q ss_pred ccccccccCCCCCCCCCCCccccCCCceEEEEeC-CCCCCCCCCCcceEEEecCCcchhhcCCccccccccchhhhcccc
Q 028779 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHSF 203 (204)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~gw~~~~ 203 (204)
+. +...... . ...|.|+|++++++.|. +.+.. +..|||+++ |+++|++|++.+ +||++.|
T Consensus 790 ~~---~~~~~~~--~--~~~G~PlpgvEvKI~~~~E~~~~---~~~GEIlvr-------~~kdpe~T~e~~--~gW~~dG 850 (1452)
T PTZ00297 790 VF---FLPSEGV--F--CVDGTPAPSLQVDLEPFDEPSDG---AGIGQLVLA-------KKGEPRRTLPIA--AQWKRDR 850 (1452)
T ss_pred ee---eecCCCC--c--ccCCeecCceEEEEcccccccCC---CCCCeEEEE-------ECCChHHHHHhh--CcCccCC
Confidence 53 2222222 1 12399999999999862 32221 235999996 468999998843 6998754
No 126
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=98.86 E-value=1.1e-08 Score=84.16 Aligned_cols=81 Identities=22% Similarity=0.140 Sum_probs=68.7
Q ss_pred CHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccccccc
Q 028779 49 DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128 (204)
Q Consensus 49 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~ 128 (204)
+.+.+++.|++++++++.+.|+.+..|++.......+ .++|.++++||.+++.+.+.+++.| ++++++.||+|| |.+
T Consensus 175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~l 251 (430)
T TIGR02304 175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFL 251 (430)
T ss_pred CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hhe
Confidence 5788999999999999999999999998754333333 4789999999999999999999999 799999999999 555
Q ss_pred cccc
Q 028779 129 ATME 132 (204)
Q Consensus 129 ~~~~ 132 (204)
+..+
T Consensus 252 a~eC 255 (430)
T TIGR02304 252 ASTC 255 (430)
T ss_pred EEec
Confidence 4433
No 127
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=98.77 E-value=1.4e-08 Score=76.89 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=53.3
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCce
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT 63 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t 63 (204)
...+++++|+++ .+|++|++|+...++.+|..|+|+++.++|++..+++.|+++++|
T Consensus 171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 346788999999 999999999988899999999999999999999999999999987
No 128
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=98.49 E-value=1.8e-06 Score=76.21 Aligned_cols=181 Identities=17% Similarity=0.124 Sum_probs=123.0
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCC
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~ 81 (204)
+...+.+..-++.+.+..--.|+..+.+...++|...++.+. .+|..+++.|++|++.-.+.+-..++.+.+....
T Consensus 977 e~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t 1056 (1363)
T KOG3628|consen 977 ETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLET 1056 (1363)
T ss_pred HHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccc
Confidence 445666666667777777777888888889999999777764 4899999999999999998888888888776544
Q ss_pred CCCCCccc------eeeeecCCCCCHHHHHHHHHhCCC-----CcEEcccccccccccccccCCC--------C-C----
Q 028779 82 KKFDLSSL------KLVGSGAAPLGKELMEECAKNVPS-----ATVIQGYGLTETSGIATMENSF--------A-G---- 137 (204)
Q Consensus 82 ~~~~l~~l------r~~~~~G~~l~~~~~~~~~~~~~~-----~~~~~~yG~tE~~~~~~~~~~~--------~-~---- 137 (204)
+..+++.. -+++..-+.....+.+.+.+.|.. -.+.-.|+..=--.++.....+ + .
T Consensus 1057 ~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~ 1136 (1363)
T KOG3628|consen 1057 SVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALRE 1136 (1363)
T ss_pred ccchhhhhhcccccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhc
Confidence 44433322 222333445556777777777621 2233344433322222221000 0 0
Q ss_pred ------------CCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEecCCcchhhcCC
Q 028779 138 ------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLI 186 (204)
Q Consensus 138 ------------~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~ 186 (204)
.......|...+++++.|++||+..+|.+|+.||||+.|.+.+.+|+.-
T Consensus 1137 grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~ 1197 (1363)
T KOG3628|consen 1137 GRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTI 1197 (1363)
T ss_pred cceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEecccccccccccc
Confidence 0011134777889999999999999999999999999999999988764
No 129
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=98.43 E-value=1.6e-06 Score=76.41 Aligned_cols=189 Identities=18% Similarity=0.125 Sum_probs=130.5
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC---CCHHHHHHHHHhcCceEEEechHHHHHHHhC----C
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKH----G 79 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~----~ 79 (204)
.+.....+.++.-+...-..|++++++.++++|.|.+..|+ ..|..+.+.+.+++.+++..-...+...... +
T Consensus 304 v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p 383 (1363)
T KOG3628|consen 304 VFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDP 383 (1363)
T ss_pred ccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCc
Confidence 34556677888888888888999999999999999999986 5788999999999999876554443333211 1
Q ss_pred -------CCCCCCCccceeeeecCCCCCHHHHHHHHHhC---------------------CCCcEEcccccccccccccc
Q 028779 80 -------LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV---------------------PSATVIQGYGLTETSGIATM 131 (204)
Q Consensus 80 -------~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~---------------------~~~~~~~~yG~tE~~~~~~~ 131 (204)
+-+.-++++||.+.+.-..+..+..+.....+ .|.-....=+++|.+.....
T Consensus 384 ~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r 463 (1363)
T KOG3628|consen 384 KATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIR 463 (1363)
T ss_pred ccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhccccc
Confidence 11224678999999998888877665544432 12222333444566555544
Q ss_pred cCCCCC----------------------------CCCCCCccccCC-CceEEEEeCCCCCCCCCCCcceEEEecCCcchh
Q 028779 132 ENSFAG----------------------------SRNIGSAGALAP-GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182 (204)
Q Consensus 132 ~~~~~~----------------------------~~~~~~~G~p~~-~~~v~v~d~~~~~~~~~g~~Gel~v~g~~~~~g 182 (204)
.+.... ......+|...| ++.+.|++|++.+.|..+++|||||.++++..+
T Consensus 464 ~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~ 543 (1363)
T KOG3628|consen 464 RPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKL 543 (1363)
T ss_pred CcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccc
Confidence 322100 001112344333 467888998999999999999999999999999
Q ss_pred hcCCccccccccc
Q 028779 183 IMLIASIILSSWG 195 (204)
Q Consensus 183 Y~~~~~~t~~~~~ 195 (204)
||..+..|+..|.
T Consensus 544 ~~al~~~t~~~F~ 556 (1363)
T KOG3628|consen 544 FYALDKQTENTFK 556 (1363)
T ss_pred eeeccccccceEE
Confidence 9998888877764
No 130
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=97.83 E-value=0.00021 Score=57.82 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=85.7
Q ss_pred HhccCcEEEEc-CCCCHHHHHHHHH----hcCceEEEechHHHHHHHhCCCCC--CCCCc-cceeeeecC------CCCC
Q 028779 35 QLQKGSCIILM-AKFDLEMFLRAIE----KHRVTHIWVVPPLILALAKHGLVK--KFDLS-SLKLVGSGA------APLG 100 (204)
Q Consensus 35 ~l~~G~~~~~~-~~~~~~~~~~~i~----~~~~t~~~~~p~~~~~l~~~~~~~--~~~l~-~lr~~~~~G------~~l~ 100 (204)
.+..+..-.+. ..+|.+.+...+. +.++..+++.|.++..++...+.. ...++ ..+.+-.|| +.++
T Consensus 161 ~~~~~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~ 240 (365)
T PF04443_consen 161 ELFFGSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVS 240 (365)
T ss_pred hcccCceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccC
Confidence 34455553332 2367776666554 566888999998877665432222 23333 455555554 4576
Q ss_pred -HHHHHHHHHhCCC---CcEEcccccccccccccccCCCCCCCCCCCccccCCCceEEEEeCCCCCCCCCCCcceEEEec
Q 028779 101 -KELMEECAKNVPS---ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG 176 (204)
Q Consensus 101 -~~~~~~~~~~~~~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~v~d~~~~~~~~~g~~Gel~v~g 176 (204)
.++.+.+.+.|+- ..+++.||+||........... .. +.|.- +.|.||++.++++.|+.|-|.+-.
T Consensus 241 r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~---~~------~~p~w-V~iRDp~tl~~~~~Ge~Gli~vid 310 (365)
T PF04443_consen 241 REEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG---HF------HVPPW-VIIRDPETLEPLPPGETGLIQVID 310 (365)
T ss_pred HHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC---cc------cCCCe-EEEECCCCCcCCCCCCeeEEEEEc
Confidence 5777788887833 5899999999976554433111 11 12221 677799999999999999998887
Q ss_pred CCc
Q 028779 177 PNM 179 (204)
Q Consensus 177 ~~~ 179 (204)
+..
T Consensus 311 l~~ 313 (365)
T PF04443_consen 311 LAN 313 (365)
T ss_pred ccc
Confidence 643
No 131
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.09 E-value=0.0041 Score=56.26 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=84.1
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCC---CHHHHHHHHHhcCceEEEechHHHHHHHhCCCC---
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--- 81 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--- 81 (204)
+..+..+++--...+..+-.....+.+.|+.|+.+.++... ++.++.+.+++|+++..+.+|++.+.++.....
T Consensus 232 f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~ 311 (1032)
T KOG1178|consen 232 FPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLP 311 (1032)
T ss_pred CCcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchh
Confidence 44555555422222312222233366778888877777543 479999999999999999999998877654322
Q ss_pred ----------CCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcEEccccccccccccccc
Q 028779 82 ----------KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132 (204)
Q Consensus 82 ----------~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~ 132 (204)
.....+.||....+|++.+..+...+.+.+...-....|+.++......+.
T Consensus 312 ~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~ 372 (1032)
T KOG1178|consen 312 LLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYD 372 (1032)
T ss_pred hhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHH
Confidence 112335899999999999999988666665433344458888877766554
No 132
>PLN02736 long-chain acyl-CoA synthetase
Probab=86.33 E-value=6.9 Score=34.42 Aligned_cols=83 Identities=8% Similarity=0.003 Sum_probs=61.8
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..++.++|++...++-.-- +....++++..|+.++.. +.+.++.+..++++.++..++..+..+..+.... ..
T Consensus 97 ~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~----~~ 170 (651)
T PLN02736 97 QHGIPKGACVGLYFINRPE--WLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCL----SE 170 (651)
T ss_pred HhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHh----hc
Confidence 4678999999888887654 333467889999998876 4678999999999999999999888776654421 12
Q ss_pred Cccceeeeec
Q 028779 86 LSSLKLVGSG 95 (204)
Q Consensus 86 l~~lr~~~~~ 95 (204)
++.++.++..
T Consensus 171 ~~~l~~ii~~ 180 (651)
T PLN02736 171 IPSVRLIVVV 180 (651)
T ss_pred CCCceEEEEE
Confidence 3456665554
No 133
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=86.28 E-value=4.9 Score=33.99 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=65.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHH-----HHHh---
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLIL-----ALAK--- 77 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~-----~l~~--- 77 (204)
.++++.+||+..+.|-+. .+..+.+++-..|..++.. |.+....+.=.|.+.++..++..|.+-. .|.+
T Consensus 96 ~lGL~kGDrVgvwgpN~~--~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icP 173 (596)
T KOG1177|consen 96 SLGLKKGDRVGVWGPNSY--EWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICP 173 (596)
T ss_pred hhcCCCCCEEEEecCChH--HHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhH
Confidence 478999999999998774 3445566777788888877 5577777777889999999999887632 2322
Q ss_pred ------CCCCCCCCCccceeeeecC
Q 028779 78 ------HGLVKKFDLSSLKLVGSGA 96 (204)
Q Consensus 78 ------~~~~~~~~l~~lr~~~~~G 96 (204)
....+...++.++.+++.+
T Consensus 174 Ev~~~~~G~lkS~~lp~lthvi~~~ 198 (596)
T KOG1177|consen 174 EVMRGDPGQLKSELLPELTHVILAD 198 (596)
T ss_pred HhhcCCCccccccccccceEEEecC
Confidence 1234556788898888777
No 134
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=84.61 E-value=9 Score=34.11 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=63.6
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
..+++++|++...++-..- +....++++..|++++.. +.+.++.+...+++.++..++.....+..+.+.. ..
T Consensus 125 ~lG~~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~----~~ 198 (696)
T PLN02387 125 ALGHNKEERVAIFADTRAE--WLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS----SQ 198 (696)
T ss_pred HhCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh----hc
Confidence 4678899999888876644 444467889999998876 4678999999999999999999888777765432 12
Q ss_pred CccceeeeecCC
Q 028779 86 LSSLKLVGSGAA 97 (204)
Q Consensus 86 l~~lr~~~~~G~ 97 (204)
+++++.++.-++
T Consensus 199 ~~~l~~ii~~~~ 210 (696)
T PLN02387 199 LETVKRVIYMDD 210 (696)
T ss_pred cCCceEEEEECC
Confidence 345666665543
No 135
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=84.34 E-value=11 Score=34.01 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=58.0
Q ss_pred cEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceee
Q 028779 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~ 92 (204)
|++...++-.. .+....++++..|++.+.. +.+.++.+..++++-++.+++..+..+..+.+.. ..++.++.+
T Consensus 131 d~V~i~~~N~~--ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~----~~~~~l~~i 204 (746)
T PTZ00342 131 KLLGLYGSNSI--NWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERK----NELPHLKKL 204 (746)
T ss_pred cEEEEEcCCCH--HHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhh----ccCCCceEE
Confidence 88888887654 3444578899999998887 5689999999999999999998887777765432 224567766
Q ss_pred eecC
Q 028779 93 GSGA 96 (204)
Q Consensus 93 ~~~G 96 (204)
+.-+
T Consensus 205 i~~~ 208 (746)
T PTZ00342 205 IILD 208 (746)
T ss_pred EEEC
Confidence 6544
No 136
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=81.19 E-value=6.3 Score=34.68 Aligned_cols=61 Identities=8% Similarity=0.004 Sum_probs=50.9
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEech
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
..+++++|++...+|-.-- +...+++++..|+..+.. +.+.++.+...+++.++..++...
T Consensus 111 ~~Gv~~GDrV~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 172 (647)
T PTZ00237 111 NLNISKNDNVLIYMANTLE--PLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTN 172 (647)
T ss_pred HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcc
Confidence 4689999999999998854 344477889999998777 568999999999999999998764
No 137
>PLN03102 acyl-activating enzyme; Provisional
Probab=80.12 E-value=10 Score=32.77 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=51.2
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~ 72 (204)
.++.++|++...+|-.- .+...+++++..|++++..+ ...++.+...+++.++..++..+...
T Consensus 59 ~Gl~~gd~Vai~~~n~~--e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 122 (579)
T PLN03102 59 LNITKNDVVSVLAPNTP--AMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFE 122 (579)
T ss_pred cCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhH
Confidence 57889999999998654 34444789999999988875 57899999999999999998876554
No 138
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=80.02 E-value=11 Score=32.40 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=53.8
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
..+++++|++...++-... +...+++++..|+.++.. +.+.+..+...+++.+++.+...+..+..+
T Consensus 92 ~~gv~~gd~V~i~~~n~~~--~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 159 (570)
T PRK04319 92 ELGVEKGDRVFIFMPRIPE--LYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERK 159 (570)
T ss_pred HhCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhcc
Confidence 3578899999988886654 444578899999998876 467899999999999999999888776543
No 139
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=79.76 E-value=17 Score=26.78 Aligned_cols=91 Identities=11% Similarity=0.138 Sum_probs=55.1
Q ss_pred EEEEecch--hhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHH------HHHHHhCCCCCCCC
Q 028779 15 VFLCVLPL--FHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPL------ILALAKHGLVKKFD 85 (204)
Q Consensus 15 ~~l~~~pl--~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~------~~~l~~~~~~~~~~ 85 (204)
+++...+- .|..|..+.-...-..|-.++.. ....++.+.+.++++++.++..+-++ +..+++..+... .
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~-~ 164 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEG-Y 164 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcC-C
Confidence 44444444 67777776444445567777765 45688999999999999987776543 222222211111 0
Q ss_pred CccceeeeecCCCCCHHHHHHH
Q 028779 86 LSSLKLVGSGAAPLGKELMEEC 107 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~ 107 (204)
.+.+ .+++||.++++++.+++
T Consensus 165 ~~~v-~i~vGG~~~~~~~~~~~ 185 (197)
T TIGR02370 165 RDSV-KFMVGGAPVTQDWADKI 185 (197)
T ss_pred CCCC-EEEEEChhcCHHHHHHh
Confidence 1223 47889989887655443
No 140
>PLN02654 acetate-CoA ligase
Probab=79.46 E-value=8.2 Score=34.13 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=51.4
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..+++++|++...+|-.-- +...+++++..|+..+.. +.+.++.+...+++.++..++....
T Consensus 139 ~~Gv~~GdrV~i~~pn~~e--~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~ 201 (666)
T PLN02654 139 DVGVKKGDAVVIYLPMLME--LPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNA 201 (666)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCc
Confidence 4688999999999988754 444578899999998887 5689999999999999999887654
No 141
>PRK07788 acyl-CoA synthetase; Validated
Probab=79.20 E-value=13 Score=31.77 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=53.2
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.++.++|++...++-.- .+...+++++..|++++..+ ....+.+...+++.++..++..+.....+
T Consensus 94 ~gi~~gd~V~i~~~n~~--~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 160 (549)
T PRK07788 94 LGVRAGDGVAVLARNHR--GFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLL 160 (549)
T ss_pred cCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHH
Confidence 47888999988876653 44445789999999999885 57889999999999999999887766554
No 142
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=78.86 E-value=23 Score=31.32 Aligned_cols=84 Identities=10% Similarity=-0.060 Sum_probs=60.4
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
.++.++|++...++-..- +....++++..|++++... ...++.+..++++.+++.++.....+..+++... ...
T Consensus 96 ~Gv~~gd~V~i~~~n~~e--w~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~---~~~ 170 (660)
T PLN02430 96 SGAEPGSRVGIYGSNCPQ--WIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDC---KSA 170 (660)
T ss_pred cCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhc---ccC
Confidence 578899999888887654 4445778999999988774 5789999999999999999988765554443211 123
Q ss_pred ccceeeeecC
Q 028779 87 SSLKLVGSGA 96 (204)
Q Consensus 87 ~~lr~~~~~G 96 (204)
+.++.++...
T Consensus 171 ~~l~~ii~~~ 180 (660)
T PLN02430 171 KRLKAIVSFT 180 (660)
T ss_pred CCceEEEEEC
Confidence 3566655543
No 143
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=78.44 E-value=10 Score=30.78 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++.+|++..++|-.-. +...+++++..|+.++..+ ......+...+++.+++.+...+.....+
T Consensus 20 ~g~~~gd~v~l~~~n~~~--~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~ 86 (408)
T TIGR01733 20 GGVGPGDRVAVLLERSAE--LVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALASRL 86 (408)
T ss_pred hCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcCchhhhc
Confidence 568899999999888843 4444788999999988875 56889999999999999998887765544
No 144
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=78.33 E-value=5.8 Score=27.49 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 23 FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
.|..|........-..|-.++... ...++.+.+.+.++++.++..+-
T Consensus 15 ~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 15 CHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 466677664445556788888775 46889999999999999887764
No 145
>PLN02614 long-chain acyl-CoA synthetase
Probab=76.57 E-value=18 Score=32.06 Aligned_cols=68 Identities=9% Similarity=-0.104 Sum_probs=54.8
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 76 (204)
..+++++|++...++-..- +....++++..|+.++... .+.++.+..++++.++..++.....+..+.
T Consensus 98 ~~Gv~~Gd~Vai~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 166 (666)
T PLN02614 98 SVGVKDEAKCGIYGANSPE--WIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELF 166 (666)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 3578999999998887754 4445778999999988874 578999999999999999998877665554
No 146
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=76.47 E-value=12 Score=30.44 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=47.6
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEe
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV 67 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 67 (204)
..+++.+|++....+-.. .+...+++++..|+.++..+ ......+...+++.++.+++.
T Consensus 40 ~~g~~~~~~V~i~~~n~~--~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 40 KLGVKKGDRVAILLPNSI--EFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp HTTSSTTSEEEEEESSSH--HHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEE
T ss_pred HhCCCccccccccCCccc--eeeeeecccccccccccccccccccccccccccccceeEEEE
Confidence 467889999888888764 34445789999999999885 578999999999999999986
No 147
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=76.05 E-value=12 Score=32.79 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=49.9
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEech
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
..++.++|++...+|-.-- ....+++++..|+..+.. +.+.+..+...+++.++..++...
T Consensus 102 ~~Gv~~Gd~V~i~~~n~~e--~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~ 163 (628)
T TIGR02316 102 ALGVGRGDRVLIYMPMIAE--AVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSAD 163 (628)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECC
Confidence 4589999999999988743 444578999999998877 467899999999999999888754
No 148
>PRK13383 acyl-CoA synthetase; Provisional
Probab=75.91 E-value=16 Score=30.85 Aligned_cols=66 Identities=8% Similarity=0.061 Sum_probs=52.5
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.++.++|++...++-.- .+...+++++..|+..+..+ .+.++.+...+++.++..+...+.....+
T Consensus 80 ~gi~~g~~V~i~~~~~~--~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 146 (516)
T PRK13383 80 DGVAPGRAVGVMCRNGR--GFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERI 146 (516)
T ss_pred cCCCCCCEEEEECCCCH--HHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHH
Confidence 47888999988887553 34445778999999999875 46889999999999999999887765544
No 149
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=75.67 E-value=17 Score=31.23 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=53.6
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
..++..+|++...+|-... +...+++++..|+.++.. +.+.++.+...+.+.++..++........+
T Consensus 76 ~~gi~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 143 (573)
T PRK05605 76 ALGVRPGDRVAIVLPNCPQ--HIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTV 143 (573)
T ss_pred HhCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHH
Confidence 3578899999999887755 444578899999998877 457899999999999999998877665443
No 150
>PLN03052 acetate--CoA ligase; Provisional
Probab=75.66 E-value=12 Score=33.59 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=51.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..++.++|++...+|-.-- ....+++++..|+..+.. +.+.++.+...+++.++..++....
T Consensus 227 ~~Gv~~GdrVai~~pn~~e--~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~ 289 (728)
T PLN03052 227 ALGFEKGDAIAIDMPMNVH--AVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDV 289 (728)
T ss_pred HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCc
Confidence 4678999999999997654 344478899999998887 5689999999999999999887654
No 151
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=75.56 E-value=17 Score=30.90 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=52.9
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
+++.++|++...++-.- .+...+++++..|+..+..+ ...+..+...+++.+++.++..+.....+
T Consensus 56 ~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 122 (546)
T PRK08314 56 CGVRKGDRVLLYMQNSP--QFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKV 122 (546)
T ss_pred hCCCCCCEEEEECCCCh--HHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhH
Confidence 38889999999888663 44455889999999988875 56889999999999999998877665544
No 152
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=75.29 E-value=12 Score=32.99 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=50.3
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..+++++|++...+|-.-- +...+++++..|+..+.. +.+.++.+...+++.++..++....
T Consensus 133 ~~Gv~~GdrV~i~~~n~~e--~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~ 195 (652)
T TIGR01217 133 ALGVRPGDRVSGYLPNIPQ--AVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDG 195 (652)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccc
Confidence 4588999999999998754 333477899999998887 4678999999999999998887543
No 153
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=74.92 E-value=21 Score=30.49 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=54.5
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 76 (204)
.+++++|++..+.|-...+ ...+++++..|++++..+ ...+..+...+++.+++.++..+.....+.
T Consensus 66 ~gi~~g~~V~v~~~n~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~ 133 (542)
T PRK06155 66 AGVKRGDRVALMCGNRIEF--LDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALE 133 (542)
T ss_pred cCCCCCCEEEEECCCChHH--HHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHH
Confidence 5688899999988877654 344788999999988875 578999999999999999998877765553
No 154
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=74.81 E-value=27 Score=26.19 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=57.5
Q ss_pred CcEEEEecc-hhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH------HHHhCCCCCCC
Q 028779 13 DYVFLCVLP-LFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL------ALAKHGLVKKF 84 (204)
Q Consensus 13 ~d~~l~~~p-l~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~------~l~~~~~~~~~ 84 (204)
+.+++.+.+ =.|..|....-..--..|-.++... ...++.+.+.+.++++.++.++-.+-. .+++......
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~- 167 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRG- 167 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcC-
Confidence 344444444 4566677664444455777777775 578999999999999998777654422 2222211111
Q ss_pred CCccceeeeecCCCCCHHHHHHH
Q 028779 85 DLSSLKLVGSGAAPLGKELMEEC 107 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~~ 107 (204)
..+ .+++||.+++++..+.+
T Consensus 168 --~~~-~i~vGG~~~~~~~~~~~ 187 (213)
T cd02069 168 --IKI-PLLIGGAATSRKHTAVK 187 (213)
T ss_pred --CCC-eEEEEChhcCHHHHhhh
Confidence 133 37788889999888764
No 155
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=74.76 E-value=23 Score=31.35 Aligned_cols=68 Identities=7% Similarity=-0.080 Sum_probs=54.3
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 76 (204)
..+++++|++...++-..- +....++++..|+.++.. +.+.++.+..++++.++..++........+.
T Consensus 96 ~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~ 164 (660)
T PLN02861 96 SRGVNPGDRCGIYGSNCPE--WIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSIL 164 (660)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHH
Confidence 3578999999999887654 444578899999998877 4578999999999999999998776655543
No 156
>PRK06839 acyl-CoA synthetase; Validated
Probab=73.95 E-value=26 Score=29.29 Aligned_cols=66 Identities=5% Similarity=-0.058 Sum_probs=53.4
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
++++++|++...++-... +...+++++..|+..+..+ ...+..+...+++.+++.++..+.....+
T Consensus 48 ~g~~~~~~V~i~~~~~~~--~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 114 (496)
T PRK06839 48 LNVKKGERIAILSQNSLE--YIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMA 114 (496)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHH
Confidence 578899999998887754 4445788999999988875 57889999999999999999888776544
No 157
>PRK07514 malonyl-CoA synthase; Validated
Probab=73.94 E-value=20 Score=30.04 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=52.5
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
..++.++|++...++-.. .+...+++++..|+..+..+ ...+..+...+++.+++.+...+.....
T Consensus 47 ~~g~~~gd~v~i~~~~~~--e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~ 113 (504)
T PRK07514 47 ALGVKPGDRVAVQVEKSP--EALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAW 113 (504)
T ss_pred HcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHH
Confidence 357889999998888774 44445789999999988775 5688999999999999998887765543
No 158
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=73.91 E-value=5.3 Score=28.80 Aligned_cols=78 Identities=8% Similarity=0.059 Sum_probs=49.2
Q ss_pred ccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCC-CCHHHHHHHHHhCCCCc
Q 028779 37 QKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP-LGKELMEECAKNVPSAT 115 (204)
Q Consensus 37 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~-l~~~~~~~~~~~~~~~~ 115 (204)
+..+.++++++.....+++.+ ..++-.-..-+.++..+++.... ...|.+++||.+ .-....+++++.+|+.+
T Consensus 3 ~~~adlv~~DG~~i~~~~~~~-g~~~~~rv~g~dl~~~l~~~~~~-----~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ 76 (172)
T PF03808_consen 3 LNSADLVLPDGMPIVWAARLL-GRPLPERVTGSDLFPDLLRRAEQ-----RGKRIFLLGGSEEVLEKAAANLRRRYPGLR 76 (172)
T ss_pred HHhCCEEecCCHHHHHHHHHc-CCCCCcccCHHHHHHHHHHHHHH-----cCCeEEEEeCCHHHHHHHHHHHHHHCCCeE
Confidence 345667777765555566665 55553445566666677664322 245788888865 34566678888889888
Q ss_pred EEccc
Q 028779 116 VIQGY 120 (204)
Q Consensus 116 ~~~~y 120 (204)
+.-.+
T Consensus 77 ivg~~ 81 (172)
T PF03808_consen 77 IVGYH 81 (172)
T ss_pred EEEec
Confidence 77443
No 159
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=73.64 E-value=24 Score=29.78 Aligned_cols=66 Identities=8% Similarity=-0.025 Sum_probs=52.7
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
..++.++|++....+-.... ...+++++..|+.++..+ .+.++.+...+++.++..++..+.....
T Consensus 56 ~~g~~~~~~v~i~~~n~~~~--~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 122 (517)
T PRK08008 56 SLGIRKGDKVALHLDNCPEF--IFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPM 122 (517)
T ss_pred HcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHH
Confidence 35788999999998877653 345778999999988774 5789999999999999999887765443
No 160
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=73.48 E-value=19 Score=30.80 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=52.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
..+++++|++..++|-... +...+++++..|++.+.. +.+.+..+...+++.+++.+.........
T Consensus 70 ~~g~~~g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~ 136 (560)
T PRK08751 70 ELQLKKGDRVALMMPNCLQ--YPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTT 136 (560)
T ss_pred HhCCCCCCEEEEECCCCHH--HHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHH
Confidence 4688899999998877754 344478899999999976 55788999999999999998887665443
No 161
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=73.38 E-value=15 Score=32.36 Aligned_cols=62 Identities=11% Similarity=-0.002 Sum_probs=49.8
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..+++++|++...+|-.-. ....+++++..|+..+.. +.+.+..+...+++.++..++....
T Consensus 133 ~~Gv~~gd~V~i~~~n~~e--~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (655)
T PRK03584 133 ALGVGPGDRVAAYLPNIPE--TVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDG 195 (655)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccc
Confidence 3578899999999987644 344478999999998877 4678999999999999998887653
No 162
>PLN02574 4-coumarate--CoA ligase-like
Probab=73.30 E-value=19 Score=30.94 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=52.5
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++++|++...++-.. .+...+++++..|+.++..+ ......+...+++.++..++..+.....+
T Consensus 87 ~G~~~gd~V~i~~~n~~--~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 153 (560)
T PLN02574 87 MGVRQGDVVLLLLPNSV--YFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKL 153 (560)
T ss_pred hCCCCCCEEEEECCCcc--hHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHH
Confidence 67889999999988664 33444788999999998875 46888999999999999988877765544
No 163
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=72.93 E-value=14 Score=32.26 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=50.3
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..+++++|++...+|-.-. +...+++++..|+..+.. +.+.+..+...+++.++..++....
T Consensus 107 ~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~ 169 (625)
T TIGR02188 107 SLGVKKGDRVAIYMPMIPE--AAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADE 169 (625)
T ss_pred HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 3688999999999987754 334477899999998877 4678999999999999999887654
No 164
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=72.86 E-value=15 Score=32.07 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=49.5
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEech
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
..+++++|++...+|-.-. ....+++++..|+..+.. +.+.+..+...+++.++..++...
T Consensus 103 ~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~ 164 (629)
T PRK10524 103 SLGVQRGDRVLIYMPMIAE--AAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSAD 164 (629)
T ss_pred HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEcc
Confidence 3588999999999988754 444478899999998776 467899999999999999888754
No 165
>PLN02246 4-coumarate--CoA ligase
Probab=72.42 E-value=20 Score=30.57 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=51.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
..++.++|++...++-.. .+...+++++..|++.+..+ ......+...+++.++..+.........
T Consensus 69 ~~g~~~gd~V~i~~~~~~--~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 135 (537)
T PLN02246 69 KLGIRQGDVVMLLLPNCP--EFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDK 135 (537)
T ss_pred HhCCCCCCEEEEECCCCh--HHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHH
Confidence 357889999988887663 44445788999999998875 5688999999999999988876655443
No 166
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=72.03 E-value=27 Score=29.30 Aligned_cols=66 Identities=8% Similarity=-0.072 Sum_probs=52.7
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++++|++...+|-... +...+++++..|+..+..+ ...+..+...+++.++..++........+
T Consensus 51 ~g~~~~~~V~l~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~ 117 (521)
T PRK06187 51 LGVKKGDRVAVFDWNSHE--YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLL 117 (521)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHH
Confidence 568889999999888764 4445789999999988875 46888999999999999988887765544
No 167
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=71.72 E-value=11 Score=22.87 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCCCCHHHHHHHHHhCCCCcE
Q 028779 51 EMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116 (204)
Q Consensus 51 ~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~ 116 (204)
..+++++.+++++++. +..+-.++-..+.+.....+...+.+++.||+..+
T Consensus 19 ~~i~~~l~~~~v~ii~---------------K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~a~i 69 (71)
T cd04910 19 LEILELLQRFKVSIIA---------------KDTNANTITHYLAGSLKTIKRLTEDLENRFPNAEI 69 (71)
T ss_pred HHHHHHHHHcCCeEEE---------------EecCCCeEEEEEEcCHHHHHHHHHHHHHhCccCcc
Confidence 5688999999999874 23334577777777767778899999999987654
No 168
>PRK08316 acyl-CoA synthetase; Validated
Probab=71.13 E-value=25 Score=29.58 Aligned_cols=66 Identities=9% Similarity=-0.017 Sum_probs=52.6
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++++|++..+++-... +...+++++..|+..+..+ ....+.+...+++.++..++........+
T Consensus 56 ~gi~~~~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~ 122 (523)
T PRK08316 56 LGLKKGDRVAALGHNSDA--YALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTA 122 (523)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHH
Confidence 478889999998877764 3334778999999988875 56889999999999999998887765544
No 169
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=70.80 E-value=18 Score=31.64 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=50.1
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..++.++|++...+|-.-. +...+++++..|+..+.. +.+.+..+...+++.++..++....
T Consensus 117 ~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~ 179 (637)
T PRK00174 117 SLGVKKGDRVAIYMPMIPE--AAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADE 179 (637)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCc
Confidence 3578899999999887754 444577899999998887 4578999999999999999887543
No 170
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=70.55 E-value=26 Score=29.48 Aligned_cols=66 Identities=9% Similarity=-0.041 Sum_probs=51.6
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.++.++|++..+++-+..+ ...+++++..|+..+..+ ...++.+...+++.++..++..+..+..+
T Consensus 45 ~g~~~~~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 111 (515)
T TIGR03098 45 LGLARGERVAIYLDKRLET--VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLL 111 (515)
T ss_pred cCCCCCCEEEEEcCCCHHH--HHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhh
Confidence 4678899999988776543 334678899999988775 57899999999999999998877655433
No 171
>PRK08162 acyl-CoA synthetase; Validated
Probab=69.65 E-value=25 Score=29.92 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=52.8
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.++.++|++...++-... +...+++++..|+..+..+ ......+...+++.+++.++..+.....+
T Consensus 63 ~g~~~g~~v~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 129 (545)
T PRK08162 63 RGIGRGDTVAVLLPNIPA--MVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVA 129 (545)
T ss_pred hCCCCCCEEEEECCCchH--HHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHH
Confidence 478889999998887754 4445778999999888774 57899999999999999999887665443
No 172
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=69.58 E-value=30 Score=29.06 Aligned_cols=64 Identities=8% Similarity=0.100 Sum_probs=50.7
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.+++++|++....+-.-. +...+++++..|+..+..+ ......+.+.+++.++..++..+....
T Consensus 50 ~gv~~g~~V~l~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~ 114 (513)
T PRK07656 50 LGIGKGDRVAIWAPNSPH--WVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLG 114 (513)
T ss_pred cCCCCCCEEEEECCCChH--HHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHH
Confidence 578889999988877643 4444778999999988775 568899999999999999988776543
No 173
>PRK09274 peptide synthase; Provisional
Probab=69.34 E-value=21 Score=30.47 Aligned_cols=60 Identities=7% Similarity=0.096 Sum_probs=47.8
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
.+++++|++...++-... +...+++++..|+..+..+ ....+.+...+++.++..+...+
T Consensus 61 ~g~~~gd~V~~~~~n~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 61 AGIGRGMRAVLMVTPSLE--FFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred cCCCCCCEEEEEeCCcHH--HHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEecc
Confidence 578899999999886643 4445788999999988875 56788899999999998887654
No 174
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=69.30 E-value=24 Score=28.88 Aligned_cols=61 Identities=10% Similarity=-0.034 Sum_probs=49.2
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
.+++.+|++...++-.-. ....+++++..|+..+..+ ......+...+++.++..+...+.
T Consensus 19 ~g~~~gd~v~i~~~~~~~--~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 19 QGIRSGSRVALVGQNSIE--MVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred hCCCCCCEEEEEcCCCHH--HHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 578899999999888753 4445789999999988875 568889999999999998876654
No 175
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=69.29 E-value=20 Score=30.77 Aligned_cols=61 Identities=8% Similarity=-0.097 Sum_probs=49.4
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
.+++++|++...++-.-. +...+++++..|+.++..+ ...++.+...+++.++..+...+.
T Consensus 52 ~Gv~~gd~V~v~~~n~~~--~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~ 113 (563)
T PLN02860 52 LGLRNGDVVAIAALNSDL--YLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDET 113 (563)
T ss_pred hCCCCCCEEEEEcCCCHH--HHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecc
Confidence 578999999999887754 3444678899999988875 578999999999999998887653
No 176
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=68.15 E-value=31 Score=29.53 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=51.2
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
.++.++|++..+++-..- ....+++++..|+..+..+ ...++.+...+++.+++.+.........
T Consensus 68 ~gi~~gd~V~i~~~n~~~--~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 133 (557)
T PRK07059 68 RGLAKGARVAIMMPNVLQ--YPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATT 133 (557)
T ss_pred hCCCCCCEEEEECCCCHH--HHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHH
Confidence 478889999988877754 3334678999999999775 5688999999999999998877665443
No 177
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=67.81 E-value=30 Score=29.70 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=50.9
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.++.++|++..+++-..- +...+++++..|+.++..+ .+..+.+...+++.++..++.......
T Consensus 70 ~gi~~gd~Vai~~~n~~~--~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 134 (562)
T PRK05677 70 TDLKPGDRIAVQLPNVLQ--YPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAH 134 (562)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhh
Confidence 478899999999887754 4445778999999998875 578899999999999999887655443
No 178
>PRK07798 acyl-CoA synthetase; Validated
Probab=67.70 E-value=40 Score=28.41 Aligned_cols=66 Identities=2% Similarity=-0.126 Sum_probs=51.4
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++++|++...++-.- .+...+++++..|+.++..+ .+..+.+...+++.++..++........+
T Consensus 48 ~g~~~~~~v~v~~~n~~--~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 114 (533)
T PRK07798 48 QGLGPGDHVGIYARNRI--EYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRV 114 (533)
T ss_pred cCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHH
Confidence 57888999988876554 34445788999999988875 56889999999999999988877655444
No 179
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=67.37 E-value=23 Score=30.27 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=50.2
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
-.++|++...+|-... +...+++++..|+..+..+ ....+.+...+++.++..+.........+
T Consensus 64 ~~~gd~Val~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 128 (539)
T PRK06334 64 KYPDQHIGIMMPASAG--AYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHL 128 (539)
T ss_pred hccCCeEEEEcCCchH--HHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHH
Confidence 3578999998887754 3444789999999988875 46788999999999999988877665544
No 180
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=66.80 E-value=72 Score=26.61 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=48.0
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--c---eEEEechHHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--V---THIWVVPPLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~---t~~~~~p~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..... .+..+|..|.++++-+.. ....+.+++.+.. . +++.+.......|+++
T Consensus 96 P~GvV~~I~P~N~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~l~~aglP~gvv~~v~g~~~~~~~l~~~--- 172 (429)
T cd07100 96 PLGVVLGIMPWNFPFWQVFRFAAPNLMAGNTVLLKHASNVPGCALAIEELFREAGFPEGVFQNLLIDSDQVEAIIAD--- 172 (429)
T ss_pred eeeEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCCCcCcEEEEeCCchhHHHHhcC---
Confidence 3346778888888654333 467899999999998642 3456777777743 2 3333333444455443
Q ss_pred CCCCCccceeeeecCC
Q 028779 82 KKFDLSSLKLVGSGAA 97 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.+.|.
T Consensus 173 -----~~i~~v~fTGs 183 (429)
T cd07100 173 -----PRVRGVTLTGS 183 (429)
T ss_pred -----CCCCEEEEECc
Confidence 24566666663
No 181
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=66.46 E-value=34 Score=28.86 Aligned_cols=67 Identities=9% Similarity=0.049 Sum_probs=53.1
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
..++.++|++..++|-... +...+++++..|+..+..+ ......+...+++.+++.++........+
T Consensus 30 ~~g~~~g~~V~v~~~~~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 97 (509)
T PRK12406 30 ALGVRPGDCVALLMRNDFA--FFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHADLLHGL 97 (509)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEEccchhhhh
Confidence 3577899999988887754 4445778899999988875 56889999999999999998877666544
No 182
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.42 E-value=50 Score=24.36 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=53.7
Q ss_pred cEEEEecc-hhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH------HHHHhCCCCCCCC
Q 028779 14 YVFLCVLP-LFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI------LALAKHGLVKKFD 85 (204)
Q Consensus 14 d~~l~~~p-l~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~------~~l~~~~~~~~~~ 85 (204)
.+++.+.+ =.|..|..+.-...-..|-.++... ...++.+.+.+.++++.++..+-++- ..+++..+... .
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~-~ 162 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAG-L 162 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCC-C
Confidence 34444444 4677777664444445777777654 56889999999999999877655332 22222211111 0
Q ss_pred CccceeeeecCCCCCHHHHHH
Q 028779 86 LSSLKLVGSGAAPLGKELMEE 106 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~ 106 (204)
...+ .+++||.+++++..+.
T Consensus 163 ~~~~-~i~vGG~~~~~~~~~~ 182 (201)
T cd02070 163 RDKV-KVMVGGAPVNQEFADE 182 (201)
T ss_pred CcCC-eEEEECCcCCHHHHHH
Confidence 1133 3778888888764433
No 183
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=66.34 E-value=38 Score=30.20 Aligned_cols=68 Identities=9% Similarity=-0.070 Sum_probs=54.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 76 (204)
..++.++|++...++-.. .+....++++..|++.+.. +...++++...+++.++..++.....+..+.
T Consensus 140 ~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~ 208 (700)
T PTZ00216 140 ELGLTKGSNVAIYEETRW--EWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLL 208 (700)
T ss_pred HhCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHH
Confidence 357889999999888764 4555578889999988776 4578999999999999999998877665554
No 184
>PLN02479 acetate-CoA ligase
Probab=66.21 E-value=43 Score=28.84 Aligned_cols=63 Identities=8% Similarity=0.079 Sum_probs=50.9
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~ 72 (204)
.++.++|++...++-.- .+...+++++..|+..+..+ ....+.+...+++.++..++..+...
T Consensus 65 ~g~~~gd~V~i~~~n~~--~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 128 (567)
T PLN02479 65 RSIGPGSTVAVIAPNIP--AMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFF 128 (567)
T ss_pred cCCCCCCEEEEECCCcH--HHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhh
Confidence 47899999998888654 34444778999999988875 56889999999999999999877654
No 185
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=65.74 E-value=80 Score=26.53 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=51.7
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech---HHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP---PLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p---~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++.+ ...+..++ .....|+++
T Consensus 123 P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~l~~~l~~ag~P~g~v~~v~g~~~~~~~l~~~--- 199 (452)
T cd07147 123 PIGPVSAITPFNFPLNLVAHKVAPAIAAGCPFVLKPASRTPLSALILGEVLAETGLPKGAFSVLPCSRDDADLLVTD--- 199 (452)
T ss_pred ceeEEEEEcCCCcHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHcCCCcCcEEEEeCCccchhHHhcC---
Confidence 3356677778877654433 356899999999998642 4556778787753 33333332 233334332
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHh
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKN 110 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~ 110 (204)
+.++.+.++| +...-+.+.+.
T Consensus 200 -----~~v~~v~fTG---s~~~g~~v~~~ 220 (452)
T cd07147 200 -----ERIKLLSFTG---SPAVGWDLKAR 220 (452)
T ss_pred -----CCCCEEEEEC---CHHHHHHHHHH
Confidence 3466777777 34455555444
No 186
>PRK07470 acyl-CoA synthetase; Validated
Probab=65.58 E-value=46 Score=28.17 Aligned_cols=64 Identities=5% Similarity=-0.104 Sum_probs=50.6
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.+++++|++....+-.. .+...+++++..|+..+..+ ......+...+++.+++.++..+....
T Consensus 52 ~g~~~g~~v~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 116 (528)
T PRK07470 52 RGVRKGDRILVHSRNCN--QMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE 116 (528)
T ss_pred hCCCCCCEEEEEcCCCH--HHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHH
Confidence 56788999988877664 44555788999999988875 568899999999999999988766543
No 187
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=64.96 E-value=47 Score=28.81 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=52.3
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
..+++++|++...++-... +...+++++..|+..+..+ ....+.+...+++.++..++........+
T Consensus 81 ~~g~~~gd~V~i~~~n~~~--~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 148 (600)
T PRK08279 81 ARGVGKGDVVALLMENRPE--YLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAF 148 (600)
T ss_pred hcCCCCCCEEEEECCCCHH--HHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 3578889999998877754 3445789999999988875 46788899999999999998877655443
No 188
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=64.95 E-value=27 Score=29.76 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=47.6
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEec
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVV 68 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~ 68 (204)
..+++++|++...+|-.- .+...+++++..|+.++..+ ......+...+++.++..++..
T Consensus 68 ~~G~~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~ 128 (547)
T PRK06087 68 AKGIEPGDRVAFQLPGWC--EFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAP 128 (547)
T ss_pred HcCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEe
Confidence 357889999999887764 34445789999999988775 4678899999999998887764
No 189
>PRK13382 acyl-CoA synthetase; Provisional
Probab=64.75 E-value=51 Score=28.13 Aligned_cols=64 Identities=9% Similarity=-0.014 Sum_probs=50.8
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.+++++|++...++-.-. +...+++++..|+.++..+ ......+...+++.++..++.......
T Consensus 88 ~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 152 (537)
T PRK13382 88 LPIGEPRVVGIMCRNHRG--FVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSA 152 (537)
T ss_pred cCCCCCCEEEEEecCcHH--HHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHH
Confidence 578889999999876543 4445889999999999875 467889999999999999887665443
No 190
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=64.71 E-value=27 Score=30.01 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=49.1
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~ 71 (204)
.+++++|++..+++-.-. +...+++++..|+..+..+ .+....+...+++.++..+...+.+
T Consensus 70 ~gi~~gd~V~i~~~n~~e--~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~ 132 (562)
T PRK12492 70 TDLVPGDRIAVQMPNVLQ--YPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMF 132 (562)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEecccc
Confidence 378899999988877654 4445788999999988774 5688999999999999988876543
No 191
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=64.53 E-value=53 Score=27.67 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=51.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
..+++++|++...++-. ..+...+++++..|+..+..+ .+++.++...+++.+++.++........
T Consensus 49 ~~g~~~g~~v~l~~~~~--~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~ 115 (508)
T TIGR02262 49 RLGVKREERVLLLMLDG--VDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPV 115 (508)
T ss_pred HcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHH
Confidence 35778889888776655 345555788999999988775 5789999999999999999887765443
No 192
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=63.78 E-value=19 Score=31.05 Aligned_cols=66 Identities=6% Similarity=-0.138 Sum_probs=52.9
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
..+. .+||++..+|..-.+. ..++++...|+..... +.+.++.+..-+.+.++.++......++..
T Consensus 60 ~~gv-kGDrV~iymp~~pe~~--~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~g 126 (528)
T COG0365 60 LGGV-KGDRVAIYMPNSPEAV--IALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNG 126 (528)
T ss_pred hCCC-CCCEEEEEcCCCHHHH--HHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEeccccccc
Confidence 3456 8999999999986544 4567889999987776 678999999999999999998777665533
No 193
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=63.32 E-value=33 Score=26.55 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=55.2
Q ss_pred EEecchhhHHHHHH-HHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeec
Q 028779 17 LCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSG 95 (204)
Q Consensus 17 l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~ 95 (204)
+..+....+.-... --+..++..+.++++++.......+.+-......-..-..++..|++.... +..|.+++|
T Consensus 41 vv~~N~e~~~~a~~d~e~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~-----~~~~vfllG 115 (253)
T COG1922 41 VVTLNAEKVLLARKDPEFREILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAE-----EGKRVFLLG 115 (253)
T ss_pred EEEcCHHHHHHhccCHHHHHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCc-----cCceEEEec
Confidence 44444444333222 345667777888888876555555333222221112223344445444321 267889999
Q ss_pred CCC-CCHHHHHHHHHhCCCCcEE
Q 028779 96 AAP-LGKELMEECAKNVPSATVI 117 (204)
Q Consensus 96 G~~-l~~~~~~~~~~~~~~~~~~ 117 (204)
|.+ +..+..+++++.+|+..+.
T Consensus 116 gkp~V~~~a~~~l~~~~p~l~iv 138 (253)
T COG1922 116 GKPGVAEQAAAKLRAKYPGLKIV 138 (253)
T ss_pred CCHHHHHHHHHHHHHHCCCceEE
Confidence 976 7788888999999977765
No 194
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=62.94 E-value=95 Score=26.35 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=47.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEechHHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..... .+..+|..|.++++-+.. ....+.+++.+.+ ++++.........|++++
T Consensus 138 GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKps~~tp~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~L~~~~---- 213 (478)
T cd07085 138 GVVAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSERVPGAAMRLAELLQEAGLPDGVLNVVHGGKEAVNALLDHP---- 213 (478)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHhcCCEEEEECCCcCcHHHHHHHHHHHHhCCCCCcEEEEecCHHHHHHHhcCC----
Confidence 47788888887655433 356899999999998642 3566777777742 333333334555555542
Q ss_pred CCCccceeeeecCC
Q 028779 84 FDLSSLKLVGSGAA 97 (204)
Q Consensus 84 ~~l~~lr~~~~~G~ 97 (204)
.++.+.++|.
T Consensus 214 ----~v~~V~fTGs 223 (478)
T cd07085 214 ----DIKAVSFVGS 223 (478)
T ss_pred ----CcCEEEEECC
Confidence 3566666663
No 195
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=62.70 E-value=46 Score=28.69 Aligned_cols=66 Identities=11% Similarity=-0.051 Sum_probs=52.1
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++++|++...++-..- ....+++++..|+..+..+ ...+..+...+++.++..++..+.....+
T Consensus 59 ~g~~~gd~V~~~~~n~~e--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 125 (576)
T PRK05620 59 LGITGDQRVGSMMYNCAE--HLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQL 125 (576)
T ss_pred cCCCCCCEEEEEeCCCHH--HHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHH
Confidence 578889999888887654 3344788999999988875 57889999999999999998877655443
No 196
>PRK12583 acyl-CoA synthetase; Provisional
Probab=62.67 E-value=35 Score=29.07 Aligned_cols=61 Identities=7% Similarity=-0.007 Sum_probs=49.0
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
.++.++|++..+.|-... +...+++++..|+..+..+ .+.+..+...+++.+++.++..+.
T Consensus 65 ~gi~~g~~V~i~~~~~~~--~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~ 126 (558)
T PRK12583 65 LGVQPGDRVGIWAPNCAE--WLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADA 126 (558)
T ss_pred hCCCCCCEEEEECCCChH--HHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEecc
Confidence 467889999888877654 4444788999999988774 578999999999999998887653
No 197
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=62.62 E-value=34 Score=29.20 Aligned_cols=64 Identities=8% Similarity=-0.120 Sum_probs=49.8
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.+++++|++..+++-...+-. .+++++..|++.+..+ ...++.+..++++.++..++.......
T Consensus 59 ~g~~~gd~v~i~~~~~~~~~~--~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~ 123 (542)
T PRK06018 59 DGIKLGDRVATIAWNTWRHLE--AWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVP 123 (542)
T ss_pred cCCCCCCEEEEEcCCchHHHH--HHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHH
Confidence 578889999888877654333 4678899999988774 568899999999999999887665443
No 198
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=62.47 E-value=63 Score=30.55 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCCcEEEEecchhhH-HHHHHHHHhHhccCcEEEEcCCC----CHHHHHHHHHhc--CceEEEechH----HHHHHHhCC
Q 028779 11 ELDYVFLCVLPLFHV-FGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVPP----LILALAKHG 79 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~-~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~~~~~p~----~~~~l~~~~ 79 (204)
.+--++++..|+++- ..+...+.++|..|.+|++-|.. ....+.+++.+. ....+..+|. .-..|+++
T Consensus 683 ~P~GVv~~IsPwNfPlai~~~~i~aALaaGNtVIlKPse~tpl~a~~l~~ll~eAGlP~gvl~lv~G~g~~vg~~Lv~~- 761 (1038)
T PRK11904 683 HGRGVFVCISPWNFPLAIFLGQVAAALAAGNTVIAKPAEQTPLIAAEAVKLLHEAGIPKDVLQLLPGDGATVGAALTAD- 761 (1038)
T ss_pred ecceEEEEECCCccHHHHHHHHHHHHHHcCCEEEeeCCCcCHHHHHHHHHHHHHhCcCcceEEEeeCCchHHHHHHhcC-
Confidence 345678899999884 33344677899999999998653 244566777663 3445555543 34455543
Q ss_pred CCCCCCCccceeeeecCCCCCHHHHHHHH
Q 028779 80 LVKKFDLSSLKLVGSGAAPLGKELMEECA 108 (204)
Q Consensus 80 ~~~~~~l~~lr~~~~~G~~l~~~~~~~~~ 108 (204)
+.++.+.++| +.++.+.+.
T Consensus 762 -------p~v~~V~FTG---S~~~g~~I~ 780 (1038)
T PRK11904 762 -------PRIAGVAFTG---STETARIIN 780 (1038)
T ss_pred -------CCcCeEEEEC---CHHHHHHHH
Confidence 3466777777 444444443
No 199
>PRK08315 AMP-binding domain protein; Validated
Probab=62.44 E-value=34 Score=29.19 Aligned_cols=61 Identities=8% Similarity=0.027 Sum_probs=49.2
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
.++.++|++..+.+-... +...+++++..|+..+..+ ......+...+++.+++.++....
T Consensus 63 ~gi~~g~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~ 124 (559)
T PRK08315 63 LGIEKGDRVGIWAPNVPE--WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADG 124 (559)
T ss_pred cCCCCCCEEEEECCCChH--HHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEecc
Confidence 478899999998877743 3445789999999998775 568889999999999998877653
No 200
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.44 E-value=64 Score=24.21 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=57.6
Q ss_pred HHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEE--EechHHHHHHHhCCCCCCCCCccceeeeecCCCC-CHHHHHHHH
Q 028779 32 TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI--WVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPL-GKELMEECA 108 (204)
Q Consensus 32 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~--~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l-~~~~~~~~~ 108 (204)
.-.+.-.|+..++.|.+++ .+.+...++++-.+ ..+|+-.....+.. .+-+|. +-++.+ .++.++.++
T Consensus 80 a~~a~~aGA~FivsP~~~~-~vi~~a~~~~i~~iPG~~TptEi~~a~~~G------a~~vKl--FPa~~~gg~~~lk~l~ 150 (212)
T PRK05718 80 LAQAIEAGAQFIVSPGLTP-PLLKAAQEGPIPLIPGVSTPSELMLGMELG------LRTFKF--FPAEASGGVKMLKALA 150 (212)
T ss_pred HHHHHHcCCCEEECCCCCH-HHHHHHHHcCCCEeCCCCCHHHHHHHHHCC------CCEEEE--ccchhccCHHHHHHHh
Confidence 3356778999999999998 77777888888887 34667666554432 122333 222322 578888888
Q ss_pred HhCCCCcEEccccccc
Q 028779 109 KNVPSATVIQGYGLTE 124 (204)
Q Consensus 109 ~~~~~~~~~~~yG~tE 124 (204)
..||+.++...-|.++
T Consensus 151 ~p~p~~~~~ptGGV~~ 166 (212)
T PRK05718 151 GPFPDVRFCPTGGISP 166 (212)
T ss_pred ccCCCCeEEEeCCCCH
Confidence 8888888887766655
No 201
>PRK07867 acyl-CoA synthetase; Validated
Probab=61.42 E-value=57 Score=27.81 Aligned_cols=64 Identities=6% Similarity=-0.091 Sum_probs=49.5
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
+..+++++...++-.- .+...+++++..|++++..+ ...++.+...+++.++..++........
T Consensus 50 ~~~~~~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 114 (529)
T PRK07867 50 DPTRPPHVGVLLDNTP--EFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAEL 114 (529)
T ss_pred CCCCCCEEEEECCCCH--HHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHH
Confidence 5667888888777543 34444789999999998775 5688999999999999999888766543
No 202
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=61.36 E-value=36 Score=29.13 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=49.5
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~ 72 (204)
.++.++|++..+.+-.. .+...+++++..|+..+..+ ...++.+.+.+++.++..+...+...
T Consensus 69 ~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~ 132 (560)
T PRK08974 69 LGLKKGDRVALMMPNLL--QYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFA 132 (560)
T ss_pred cCCCCCCEEEEECCCCH--HHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEecccc
Confidence 57888999988877653 34445788999999999875 56889999999999999988765443
No 203
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=61.14 E-value=1e+02 Score=26.21 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=46.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEechHHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++.+ ++++.+.......|+.+
T Consensus 144 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~t~~~l~~~~~~aglP~g~v~~v~g~~~~~~~L~~~----- 218 (488)
T PRK13252 144 GVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNVVQGDGRVGAWLTEH----- 218 (488)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHhcCCeEEEeCCccCcHHHHHHHHHHHHcCcCcccEEEEecCcHHHHHHhcC-----
Confidence 45667778887655443 356899999999998642 4556778887753 23333323344455543
Q ss_pred CCCccceeeeecC
Q 028779 84 FDLSSLKLVGSGA 96 (204)
Q Consensus 84 ~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 219 ---~~vd~V~fTG 228 (488)
T PRK13252 219 ---PDIAKVSFTG 228 (488)
T ss_pred ---CCCCEEEEEC
Confidence 2455666666
No 204
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=61.12 E-value=38 Score=29.40 Aligned_cols=68 Identities=9% Similarity=0.061 Sum_probs=56.2
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHh
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAK 77 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 77 (204)
++++.+|++...+|-..-+.. ..++++..|+.+... +.++...+...++..++++++.....+..+..
T Consensus 67 ~~i~~gDvV~i~~pNs~~~~~--~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~ 135 (537)
T KOG1176|consen 67 LGIKKGDVVGILAPNTPEFVE--LALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISE 135 (537)
T ss_pred CCCCCCCEEEEEcCCCHHHHH--HHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHH
Confidence 358899999999998866544 356888899998887 46899999999999999999998887776643
No 205
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=60.87 E-value=68 Score=31.18 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=56.0
Q ss_pred CCCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC-C---HHHHHHHHHhc--CceEEEechH----HHHHHHhCC
Q 028779 11 ELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF-D---LEMFLRAIEKH--RVTHIWVVPP----LILALAKHG 79 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~-~---~~~~~~~i~~~--~~t~~~~~p~----~~~~l~~~~ 79 (204)
++--++++..|+++-..+.. .+.++|..|.+|++-|.. . ...+.+++.+. ....+..+|. .-..|+.+
T Consensus 767 ~PlGVV~~IsPWNFPlai~~g~iaaALaAGN~VV~KPseqTpl~a~~lv~ll~eAGlP~gvlqlv~G~g~~vg~~Lv~~- 845 (1318)
T PRK11809 767 RPLGPVVCISPWNFPLAIFTGQVAAALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGVVQLLPGRGETVGAALVAD- 845 (1318)
T ss_pred ecccEEEEECCCccHHHHHHHHHHHHHHcCCeEEEeCCCCcHHHHHHHHHHHHHhCcCcCeEEEeeCCcHHHHHHHhcC-
Confidence 35568999999998554443 567899999999998753 3 34556667663 4455555553 34455543
Q ss_pred CCCCCCCccceeeeecCCCCCHHHHHHHHH
Q 028779 80 LVKKFDLSSLKLVGSGAAPLGKELMEECAK 109 (204)
Q Consensus 80 ~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~ 109 (204)
+.++.+.++| +.++.+.+.+
T Consensus 846 -------p~V~~V~FTG---St~tg~~I~~ 865 (1318)
T PRK11809 846 -------ARVRGVMFTG---STEVARLLQR 865 (1318)
T ss_pred -------CCcCEEEEeC---CHHHHHHHHH
Confidence 3566777777 3444444443
No 206
>PRK05852 acyl-CoA synthetase; Validated
Probab=60.43 E-value=39 Score=28.72 Aligned_cols=59 Identities=2% Similarity=-0.116 Sum_probs=47.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEe
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWV 67 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 67 (204)
..++.++|++...++-.- .+...+++++..|+..+..+ .+.+..+...+++.++..++.
T Consensus 62 ~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 121 (534)
T PRK05852 62 RSGLLPGDRVALRMGSNA--EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI 121 (534)
T ss_pred hcCCCCCCEEEEECCCcH--HHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEE
Confidence 357889999988877664 34445788999999988775 578899999999999998874
No 207
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=60.42 E-value=56 Score=27.87 Aligned_cols=64 Identities=5% Similarity=-0.080 Sum_probs=50.0
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.+++++|++..+++-.-. +...+++++..|++++..+ ...+..+...+++.++..++..+....
T Consensus 62 ~g~~~g~~V~i~~~~~~~--~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~ 126 (542)
T PRK07786 62 RGVGFGDRVLILMLNRTE--FVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAP 126 (542)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHH
Confidence 478889999888776544 3445788999999998875 568899999999999998887765543
No 208
>PRK07529 AMP-binding domain protein; Validated
Probab=60.37 E-value=35 Score=29.93 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=46.4
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEech
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
..+++++|++...+|-... +...+++++..|..+.+.+...++.+...+++.++..++...
T Consensus 77 ~~Gi~~gd~V~i~~~n~~e--~~~~~lA~~~~Gi~~pi~~~~~~~~i~~~l~~~~~~~li~~~ 137 (632)
T PRK07529 77 SLGVGPGDVVAFLLPNLPE--THFALWGGEAAGIANPINPLLEPEQIAELLRAAGAKVLVTLG 137 (632)
T ss_pred HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCEEEeCCCcCCHHHHHHHHHhcCCcEEEEeC
Confidence 3578899999999997654 334467788888543333567899999999999999988753
No 209
>PRK06178 acyl-CoA synthetase; Validated
Probab=60.14 E-value=54 Score=28.13 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=52.9
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++++|++...++-... +...+++++..|+..+..+ ...+..+...+++.++..+...+.....+
T Consensus 78 ~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l 144 (567)
T PRK06178 78 RGVGAGDRVAVFLPNCPQ--FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVV 144 (567)
T ss_pred cCCCCCCEEEEECCCCcH--HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHH
Confidence 577889999888887765 3344778899999888764 56888999999999999999888776544
No 210
>PRK13388 acyl-CoA synthetase; Provisional
Probab=60.10 E-value=58 Score=27.85 Aligned_cols=65 Identities=6% Similarity=-0.101 Sum_probs=50.1
Q ss_pred ccC-CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 8 TAG-ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 8 ~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
.++ .++|++...++-... +...+++++..|+.++..+ .+..+.+...+++.++..++........
T Consensus 46 ~g~~~~~~~V~i~~~n~~~--~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 112 (540)
T PRK13388 46 LADPDRPLHVGVLLGNTPE--MLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPL 112 (540)
T ss_pred hcCCCCCCEEEEECCCCcH--HHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHH
Confidence 456 678999888886654 3345788999999998775 5678899999999999998887655443
No 211
>PRK05857 acyl-CoA synthetase; Validated
Probab=60.03 E-value=39 Score=28.87 Aligned_cols=62 Identities=8% Similarity=-0.036 Sum_probs=49.6
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~ 71 (204)
.++.++|++...++-...+ ...+++++..|+..+..+ .+..+.+...++..++..++..+..
T Consensus 61 ~g~~~g~~V~i~~~~~~e~--~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~ 123 (540)
T PRK05857 61 QSVSRGSRVLVISDNGPET--YLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGS 123 (540)
T ss_pred hCcCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccc
Confidence 5778899999988877653 334778999999999875 4688999999999998888877654
No 212
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=59.90 E-value=1.1e+02 Score=25.99 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=47.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC----CCHHHHHHHHHhcC-----ceEEEechH-HHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK----FDLEMFLRAIEKHR-----VTHIWVVPP-LILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~-----~t~~~~~p~-~~~~l~~~~~~~ 82 (204)
-+++...|+++-..... .+..+|..|.++++-+. .....+.+++.+.+ ++++..... .-..|+++
T Consensus 137 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~---- 212 (478)
T cd07131 137 GVVALITPWNFPVAIPSWKIFPALVCGNTVVFKPAEDTPACALKLVELFAEAGLPPGVVNVVHGRGEEVGEALVEH---- 212 (478)
T ss_pred eEEEEECCcCcHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHhcCcCCCcEEEEecCchHHHHHHhcC----
Confidence 48888889888665544 35789999999999864 24556677777743 333433222 44445443
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 213 ----~~vd~V~ftGs 223 (478)
T cd07131 213 ----PDVDVVSFTGS 223 (478)
T ss_pred ----CCCCEEEEECc
Confidence 24666666663
No 213
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=59.67 E-value=63 Score=26.89 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=50.7
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.+++++|++...+|-... +...+++++..|+..+..+ ...+..+...+++.++..+........
T Consensus 47 ~g~~~~~~v~i~~~~~~~--~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 111 (483)
T PRK03640 47 LGVKKGDRVALLMKNGME--MILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEA 111 (483)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhH
Confidence 467889999998887765 4445789999999999885 468899999999999988877655433
No 214
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=59.61 E-value=66 Score=24.55 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=58.9
Q ss_pred HhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCC-------CCHHHHHHH
Q 028779 35 QLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP-------LGKELMEEC 107 (204)
Q Consensus 35 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~-------l~~~~~~~~ 107 (204)
-+--|.++++-.+-....+.+.|.+..+|++--.+.....|... ++++.++.||+- ..+...+.+
T Consensus 90 lI~~gd~Ifld~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~--------~~~~vil~GG~~~~~~~~~~G~~a~~~l 161 (240)
T PRK10411 90 WIEEGMVIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKR--------ERIQLISSGGTLERKYGCYVNPSLISQL 161 (240)
T ss_pred hCCCCCEEEEcCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcC--------CCCEEEEECCEEeCCCCceECHHHHHHH
Confidence 34446666666665667778888766788777777777766543 357788888852 335566777
Q ss_pred HHhCCCCcEEccccccccccccc
Q 028779 108 AKNVPSATVIQGYGLTETSGIAT 130 (204)
Q Consensus 108 ~~~~~~~~~~~~yG~tE~~~~~~ 130 (204)
++......++..-|.++.+++..
T Consensus 162 ~~~~~d~afis~~gi~~~~G~~~ 184 (240)
T PRK10411 162 KSLEIDLFIFSCEGIDSSGALWD 184 (240)
T ss_pred HhcCCCEEEEeceeECCCCCccc
Confidence 77656777888888875444443
No 215
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.49 E-value=51 Score=22.08 Aligned_cols=84 Identities=17% Similarity=0.005 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHH------HHHHHhCCCCCCCCCccceeeeec
Q 028779 23 FHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPL------ILALAKHGLVKKFDLSSLKLVGSG 95 (204)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~------~~~l~~~~~~~~~~l~~lr~~~~~ 95 (204)
.|..|....-...-..|-.++.... ..++.+.+.+.+.++.++..+-+. +..+++..+.+ .+..++ ++.|
T Consensus 11 ~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~--~~~~i~-i~~G 87 (122)
T cd02071 11 GHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL--GAGDIL-VVGG 87 (122)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc--CCCCCE-EEEE
Confidence 3666766633334445666666654 578899999999999988776432 12222221111 122333 5556
Q ss_pred CCCCCHHHHHHHHHh
Q 028779 96 AAPLGKELMEECAKN 110 (204)
Q Consensus 96 G~~l~~~~~~~~~~~ 110 (204)
|. .+++..+++++.
T Consensus 88 G~-~~~~~~~~~~~~ 101 (122)
T cd02071 88 GI-IPPEDYELLKEM 101 (122)
T ss_pred CC-CCHHHHHHHHHC
Confidence 64 456667777665
No 216
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=59.42 E-value=1e+02 Score=25.57 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=34.5
Q ss_pred CcEEEEecchhhHHH-HHHHHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC
Q 028779 13 DYVFLCVLPLFHVFG-LAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR 61 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g-~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~ 61 (204)
--+++...|.++-.. ....+..+|..|.++++.+.. ....+.+.+++..
T Consensus 97 ~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~vilkps~~~~~~~~~l~~~l~~ag 150 (432)
T cd07078 97 LGVVGAITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTALLLAELLAEAG 150 (432)
T ss_pred cceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcC
Confidence 347788888777633 333467899999999988642 4567778888754
No 217
>PRK06188 acyl-CoA synthetase; Validated
Probab=59.37 E-value=45 Score=28.21 Aligned_cols=62 Identities=8% Similarity=-0.083 Sum_probs=49.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..++.++|+++.+++-.-. +...+++++..|+..+..+ ..+...+...+++.+++.+...+.
T Consensus 56 ~~gv~~~~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 118 (524)
T PRK06188 56 ALGLGTGDAVALLSLNRPE--VLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPA 118 (524)
T ss_pred HcCCCCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecc
Confidence 3577889999888766643 4444778999999998875 568889999999999999888776
No 218
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=59.32 E-value=56 Score=27.86 Aligned_cols=64 Identities=6% Similarity=-0.168 Sum_probs=49.7
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.++.++|++...+|-..- ....+++++..|+.++.. +...+..+...+++.++..+...+.+..
T Consensus 59 ~g~~~~d~v~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (539)
T PRK07008 59 LGVEPGDRVGTLAWNGYR--HLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLP 123 (539)
T ss_pred cCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHH
Confidence 578899999999876643 333367888899998877 4578899999999999998887766543
No 219
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=59.17 E-value=1.1e+02 Score=25.77 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=47.6
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ .....|+++
T Consensus 119 GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~L~~~---- 194 (454)
T cd07109 119 GVTGHIIPWNYPLQITGRSVAPALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGALNVVTGLGAEAGAALVAH---- 194 (454)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcC----
Confidence 37778888887754432 467899999999998652 3556777777743 23333332 345556543
Q ss_pred CCCCccceeeeecC
Q 028779 83 KFDLSSLKLVGSGA 96 (204)
Q Consensus 83 ~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 195 ----~~v~~v~ftG 204 (454)
T cd07109 195 ----PGVDHISFTG 204 (454)
T ss_pred ----CCCCEEEEEC
Confidence 3466677777
No 220
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=58.65 E-value=58 Score=27.32 Aligned_cols=66 Identities=8% Similarity=-0.048 Sum_probs=52.3
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++++|++...++-+.. ....+++++..|+..+..+ .+....+...+++.+++.++..+.....+
T Consensus 31 ~g~~~~~~V~i~~~~~~~--~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 97 (502)
T PRK08276 31 LGLREGDVVAILLENNPE--FFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTA 97 (502)
T ss_pred hCCCCCCEEEEEeCCCHH--HHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEccchhhHH
Confidence 567889999999887754 3334788999999988875 46788999999999999998877665544
No 221
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.36 E-value=62 Score=27.17 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=51.0
Q ss_pred ccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEE--------echHHHHHHH
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIW--------VVPPLILALA 76 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~--------~~p~~~~~l~ 76 (204)
...+++++|+++..+|--- .+...+|+-|..|..-|+. +......+-...+.-.++.+. .--.+.+.++
T Consensus 71 ~~lGi~~Gd~vlvQLpN~~--ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~ 148 (542)
T COG1021 71 RRLGIKPGDTVLVQLPNVA--EFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELV 148 (542)
T ss_pred HhcCCCCCCEEEEECCchH--HHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHH
Confidence 3578999999999998664 4555567778888887765 433323332223333333222 2223333333
Q ss_pred hCCCCCCCCCccceeeeecCCCCCH
Q 028779 77 KHGLVKKFDLSSLKLVGSGAAPLGK 101 (204)
Q Consensus 77 ~~~~~~~~~l~~lr~~~~~G~~l~~ 101 (204)
. +.+++|.+++.|+.=.+
T Consensus 149 a-------~~~tlr~v~v~ge~~~~ 166 (542)
T COG1021 149 A-------KHPTLRHVIVAGEAEHP 166 (542)
T ss_pred h-------hCCcceEEEEccCCCCc
Confidence 2 23688999888887544
No 222
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=57.99 E-value=1.2e+02 Score=26.06 Aligned_cols=78 Identities=8% Similarity=-0.046 Sum_probs=49.3
Q ss_pred CCcEEEEecchhhHHHHH-HHHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--c---eEEEec-hHHHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--V---THIWVV-PPLILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~-~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~---t~~~~~-p~~~~~l~~~~~ 80 (204)
+--+++...|+++-..+. ..+..+|..|.++++-+.. ....+.+++.+.+ . +++.+. ......|+++
T Consensus 154 P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~eaGlP~gvv~~v~g~~~~~~~~L~~~-- 231 (500)
T cd07083 154 GLGAGVVISPWNFPVAIFTGMIVAPVAVGNTVIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEH-- 231 (500)
T ss_pred ccceEEEEcCCccHHHHHHHHHHHHHHcCCeEEEeCCCcchHHHHHHHHHHHHcCCCCCceEEEeCCCchhHHHHhcC--
Confidence 445788899999875554 3467899999999998642 3456677777652 2 233331 2344455443
Q ss_pred CCCCCCccceeeeecCC
Q 028779 81 VKKFDLSSLKLVGSGAA 97 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 232 ------~~v~~v~ftGs 242 (500)
T cd07083 232 ------ERIRGINFTGS 242 (500)
T ss_pred ------CCcCEEEEECc
Confidence 35666777773
No 223
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=57.88 E-value=1.2e+02 Score=26.14 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=50.6
Q ss_pred CcEEEEecchhhHH-HHHHHHHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC--ceEEEech---H-HHHHHHhCCCC
Q 028779 13 DYVFLCVLPLFHVF-GLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR--VTHIWVVP---P-LILALAKHGLV 81 (204)
Q Consensus 13 ~d~~l~~~pl~h~~-g~~~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~--~t~~~~~p---~-~~~~l~~~~~~ 81 (204)
--+++...|+++-. .....+..+|..|.++++-+. . ....+.+++.+.+ ...+..++ . ....|+++
T Consensus 168 ~GVV~~I~p~N~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~ll~eaGlP~gvv~vv~g~~~~~~~~L~~~--- 244 (518)
T cd07125 168 RGVFVCISPWNFPLAIFTGQIAAALAAGNTVIAKPAEQTPLIAARAVELLHEAGVPRDVLQLVPGDGEEIGEALVAH--- 244 (518)
T ss_pred ccEEEEECCcchHHHHHHHHHHHHHHcCCEEEEeCCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCchhhHHHHhcC---
Confidence 34567778887633 333357789999999999764 2 3466777777743 23333332 2 34444433
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHh
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKN 110 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~ 110 (204)
+.++.+.+.| +.+..+.+.+.
T Consensus 245 -----~~vd~V~ftG---s~~~g~~i~~~ 265 (518)
T cd07125 245 -----PRIDGVIFTG---STETAKLINRA 265 (518)
T ss_pred -----CCcCEEEEEC---CHHHHHHHHHH
Confidence 3466777777 44444444443
No 224
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=57.44 E-value=44 Score=28.51 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=49.5
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
.++.++|++...++-...+ ...+++++..|+..+..+ ......+...+++.++..+...+....
T Consensus 75 ~g~~~g~~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 139 (546)
T PLN02330 75 LGLRKGQVVVVVLPNVAEY--GIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYG 139 (546)
T ss_pred hCCCCCCEEEEECCCchHH--HHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhh
Confidence 5778899998888777643 334678999999988764 467889999999999998877665544
No 225
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=57.24 E-value=1.3e+02 Score=25.91 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=48.6
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-CC---HHHHHHHHHhcC-----ceEEEec-hHHHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-FD---LEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~~---~~~~~~~i~~~~-----~t~~~~~-p~~~~~l~~~~~ 80 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+. .. ...+.+++.+.+ ++++.+. ...-..|++++
T Consensus 158 P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~p- 236 (501)
T PLN02766 158 PIGVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPAEQTPLSALFYAHLAKLAGVPDGVINVVTGFGPTAGAAIASHM- 236 (501)
T ss_pred cceEEEEECCCCChHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHhcCCCcCcEEEEecCchHHHHHHhcCC-
Confidence 4457788888887766543 46689999999999864 23 346667777753 3444442 23445555542
Q ss_pred CCCCCCccceeeeecC
Q 028779 81 VKKFDLSSLKLVGSGA 96 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G 96 (204)
.++.+.++|
T Consensus 237 -------~v~~V~FTG 245 (501)
T PLN02766 237 -------DVDKVSFTG 245 (501)
T ss_pred -------CCCEEEEEC
Confidence 455666666
No 226
>PRK09192 acyl-CoA synthetase; Validated
Probab=57.19 E-value=70 Score=27.60 Aligned_cols=66 Identities=5% Similarity=-0.112 Sum_probs=50.2
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CC-------HHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FD-------LEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~-------~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.+++++|++..+++-+-- +...+++++..|+..+..+. ++ .+++...+++.++..+.........+
T Consensus 69 ~gi~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~ 142 (579)
T PRK09192 69 LGLKPGDRVALIAETDGD--FVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWV 142 (579)
T ss_pred hCCCCCCEEEEEcCCchh--HHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHH
Confidence 578899999999888643 44447899999999988842 11 57899999999999988877654433
No 227
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=57.05 E-value=85 Score=30.29 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=49.8
Q ss_pred CCcEEEEecchhhHHHH-HHHHHhHhccCcEEEEcCC-CC---HHHHHHHHHhc--CceEEEechH----HHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-FD---LEMFLRAIEKH--RVTHIWVVPP----LILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~-~~~~~~~l~~G~~~~~~~~-~~---~~~~~~~i~~~--~~t~~~~~p~----~~~~l~~~~~ 80 (204)
+--++++..|+++-..+ ...+.++|..|.+|++-|. .. ...+.+++.+. ....+..+|. .-..|++++
T Consensus 676 P~GVv~~IsPwNfPlai~~g~i~aALaaGN~VV~KPse~tpl~a~~l~~ll~eAGlP~gvl~lV~G~g~~vg~~Lv~~p- 754 (1208)
T PRK11905 676 PLGPVVCISPWNFPLAIFTGQIAAALVAGNTVLAKPAEQTPLIAARAVRLLHEAGVPKDALQLLPGDGRTVGAALVADP- 754 (1208)
T ss_pred CccEEEEEcCCcCHHHHHHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHHHHHcCCCcccEEEeeCCchHHHHHHHcCC-
Confidence 45688999999884433 3356789999999999875 23 45566777764 3344444442 455565543
Q ss_pred CCCCCCccceeeeecCC
Q 028779 81 VKKFDLSSLKLVGSGAA 97 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G~ 97 (204)
.++.+.++|.
T Consensus 755 -------~v~~V~FTGS 764 (1208)
T PRK11905 755 -------RIAGVMFTGS 764 (1208)
T ss_pred -------CcCEEEEeCC
Confidence 4566667663
No 228
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=56.98 E-value=1.1e+02 Score=26.31 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=49.1
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~-~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+. ..+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ .....|+++
T Consensus 168 GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L~~~---- 243 (512)
T cd07124 168 GVGAVISPWNFPLAILAGMTTAALVTGNTVVLKPAEDTPVIAAKLVEILEEAGLPPGVVNFLPGPGEEVGDYLVEH---- 243 (512)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCccccHHHHHHHHHHHHhCcCCCceEEeccCchHHHHHHhcC----
Confidence 4788889988855443 3577899999999998642 4556677777743 33444433 234555544
Q ss_pred CCCCccceeeeecCCC
Q 028779 83 KFDLSSLKLVGSGAAP 98 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.++|..
T Consensus 244 ----~~v~~V~fTGs~ 255 (512)
T cd07124 244 ----PDVRFIAFTGSR 255 (512)
T ss_pred ----CCCCEEEEeCch
Confidence 246667777744
No 229
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=56.97 E-value=67 Score=22.69 Aligned_cols=98 Identities=19% Similarity=0.076 Sum_probs=61.8
Q ss_pred CcEEEEecchhhHHHHHHHHHhHh-ccCcEEEEcCCCCHHHH---HHHHHhcCceEEEechHHHHHHHhCCCCCCCCCcc
Q 028779 13 DYVFLCVLPLFHVFGLAVITCGQL-QKGSCIILMAKFDLEMF---LRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS 88 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~~~~~~l-~~G~~~~~~~~~~~~~~---~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~ 88 (204)
.+.-+.|..=.-...... ++.-| ..|+++.+...|||.-+ .+++++|+...+.+.+.-+.............+.
T Consensus 40 ~~~pLVCt~G~p~~A~~~-LL~~L~~~g~~l~y~GDfDp~Gl~IA~~l~~r~~~~~Wrm~~~dY~~~~~~~~~~~~~l~- 117 (152)
T PF09664_consen 40 SCPPLVCTSGQPSAAARR-LLDRLAAAGARLYYSGDFDPEGLRIANRLIQRYGARPWRMDAEDYLAALSAEPLSGRRLK- 117 (152)
T ss_pred CCCeEEEcCCcHHHHHHH-HHHHHHhCCCEEEEecCCCHHHHHHHHHHHHHhCCccccCCHHHHHHhccccCCCCCcCC-
Confidence 344444444444444444 44444 46888888888997644 3566678988899999988766655433333333
Q ss_pred ceeeeecCCCCCHHHHHHHHHhCCCCcEEc
Q 028779 89 LKLVGSGAAPLGKELMEECAKNVPSATVIQ 118 (204)
Q Consensus 89 lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~ 118 (204)
++ .. .+..+++.+.+++. +..+++
T Consensus 118 l~---~v-~p~~~~L~~~m~~~--~~a~~Q 141 (152)
T PF09664_consen 118 LP---NV-APWLPELAEAMRER--GRAVYQ 141 (152)
T ss_pred cc---cC-ChhcHHHHHHHHHh--CceeeH
Confidence 33 33 68888899888887 555554
No 230
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=56.84 E-value=1.2e+02 Score=25.49 Aligned_cols=75 Identities=17% Similarity=0.068 Sum_probs=46.2
Q ss_pred cEEEEecchhhHHHH-HHHHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ce---EEEechHHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VT---HIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~-~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t---~~~~~p~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-... ...+..+|..|.++++.+.. ....+.+++++.+ .. ++.........|+++
T Consensus 118 GVv~~i~p~N~P~~~~~~~l~~ALaaGN~VVlKps~~~~~~~~~l~~~l~~aGlP~g~~~~v~g~~~~~~~L~~~----- 192 (452)
T cd07102 118 GVVLIIAPWNYPYLTAVNAVIPALLAGNAVILKHSPQTPLCGERFAAAFAEAGLPEGVFQVLHLSHETSAALIAD----- 192 (452)
T ss_pred cEEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHhcCCCcCcEEEEeCCchhHHHHhcC-----
Confidence 477788887775422 22477899999999998642 3456677777753 23 333333345555554
Q ss_pred CCCccceeeeecC
Q 028779 84 FDLSSLKLVGSGA 96 (204)
Q Consensus 84 ~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 193 ---~~v~~V~fTG 202 (452)
T cd07102 193 ---PRIDHVSFTG 202 (452)
T ss_pred ---CCCCEEEEEC
Confidence 3455666666
No 231
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=56.78 E-value=24 Score=30.45 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=47.6
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEE-cccccccccccccccCCCCCCCCCCCccccCCCc-eEEEEeCCC---
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAGALAPGV-EALIVSVDT--- 160 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~-~v~v~d~~~--- 160 (204)
.++|+.+.+.+..-...-.+++++.+|++.++ ..|++||. .+.+...++ ...+...++. -.+.++.++
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg-~i~i~~~~~------~~~~~l~~~~~ffEFip~~~~~~ 338 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG-FIGIPLDPE------DPGYVLAPDSGFFEFIPVDEDEQ 338 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE-EEEEES-CC------C--EEE-TTSSEEEEEE-STT--
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce-EEEEecCCC------CCceEeecCCeEEEEEeccCCcc
Confidence 47888776666665667788888888775544 88999995 333332211 1223333333 344444222
Q ss_pred -----CC-----CCCCCCcceEEEecCCcchhh
Q 028779 161 -----QK-----PLPPNQLGEIWLRGPNMMRGI 183 (204)
Q Consensus 161 -----~~-----~~~~g~~Gel~v~g~~~~~gY 183 (204)
.+ .+..|+.=||+++..+=.-.|
T Consensus 339 ~~~~~~~~l~~~ele~G~~YelviTt~~GLyRY 371 (528)
T PF03321_consen 339 NPSEQPKTLLLHELEVGEEYELVITTNSGLYRY 371 (528)
T ss_dssp -----SSSEEGGG--TT-EEEEEEESTTS-SSE
T ss_pred cccCCCceecHHHhcCCCeEEEEEecccceeee
Confidence 22 356788889999987665555
No 232
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=56.50 E-value=1.3e+02 Score=25.70 Aligned_cols=77 Identities=17% Similarity=0.019 Sum_probs=47.7
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEec---hHHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVV---PPLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~---p~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ...+..+ ...-..|+++
T Consensus 132 P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~t~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~L~~~--- 208 (484)
T TIGR03240 132 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAEETVKLWEKAGLPAGVLNLVQGARETGVALAAH--- 208 (484)
T ss_pred cccEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccccHHHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHhcC---
Confidence 4457888888887654322 366899999999998642 3556677777653 2333333 3334444443
Q ss_pred CCCCCccceeeeecC
Q 028779 82 KKFDLSSLKLVGSGA 96 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 209 -----~~vd~V~fTG 218 (484)
T TIGR03240 209 -----PDIDGLLFTG 218 (484)
T ss_pred -----CCCCEEEEEC
Confidence 3466677766
No 233
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=56.32 E-value=47 Score=28.35 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=49.0
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..+++++|++...++-.... ...+++++..|+..+..+ ....+.+...+++.++..+.....
T Consensus 74 ~~g~~~g~~Val~~~n~~e~--~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~ 136 (547)
T PRK13295 74 RLGVGRGDVVSCQLPNWWEF--TVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKT 136 (547)
T ss_pred HhCCCCCCEEEEECCCChHH--HHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEecc
Confidence 35788999999998866543 344789999999988774 568889999999999998876553
No 234
>PRK09088 acyl-CoA synthetase; Validated
Probab=56.25 E-value=55 Score=27.34 Aligned_cols=60 Identities=3% Similarity=-0.086 Sum_probs=47.7
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
.++..+|++...++-... +...+++++..|+.++..+ ...+..+...+++.+++.++...
T Consensus 42 ~g~~~~~~v~i~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~ 102 (488)
T PRK09088 42 RGCVDGERLAVLARNSVW--LVALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDD 102 (488)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcc
Confidence 467889999888887765 3334678899999988775 56889999999999999887654
No 235
>PRK12582 acyl-CoA synthetase; Provisional
Probab=56.23 E-value=41 Score=29.40 Aligned_cols=61 Identities=7% Similarity=0.019 Sum_probs=46.3
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CC-----HHHHHHHHHhcCceEEEech
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FD-----LEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~-----~~~~~~~i~~~~~t~~~~~p 69 (204)
..+++++|+++..++-.. .+...+++++..|+..+..+. +. .+.+...+++.++..++...
T Consensus 99 ~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~ 165 (624)
T PRK12582 99 DLGLDPGRPVMILSGNSI--EHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQS 165 (624)
T ss_pred HcCCCCCCEEEEecCCCH--HHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecC
Confidence 357889999999988553 344447899999999888753 33 37889999999988877654
No 236
>PRK06164 acyl-CoA synthetase; Validated
Probab=55.98 E-value=48 Score=28.19 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=49.4
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..++.++|++...++-... +...+++++..|+..+..+ ......+...+++.+++.++..+.
T Consensus 54 ~~g~~~g~~V~i~~~n~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~ 116 (540)
T PRK06164 54 AQGVRRGDRVAVWLPNCIE--WVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPG 116 (540)
T ss_pred HhCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccc
Confidence 3577889999988887754 3334778999999988875 467889999999999999887654
No 237
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=55.96 E-value=10 Score=20.89 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.6
Q ss_pred eeeeecCCCCCHHHHHHHHHhC
Q 028779 90 KLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 90 r~~~~~G~~l~~~~~~~~~~~~ 111 (204)
+.+-++|.|++.+..+.++..|
T Consensus 22 ~wvSf~GrPltdevK~a~k~i~ 43 (49)
T PF06543_consen 22 KWVSFDGRPLTDEVKEAMKLIF 43 (49)
T ss_pred HheeeCCeeCCHHHHHHHHHHH
Confidence 5678999999999999998887
No 238
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=55.86 E-value=71 Score=22.64 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=61.9
Q ss_pred HhccCcEEEEcCCCCHHHHHHHHHhc-CceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCC-------CCHHHHHH
Q 028779 35 QLQKGSCIILMAKFDLEMFLRAIEKH-RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP-------LGKELMEE 106 (204)
Q Consensus 35 ~l~~G~~~~~~~~~~~~~~~~~i~~~-~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~-------l~~~~~~~ 106 (204)
-+-.|.++++-.+-....+++.|.+. ++|++--.......|.+. ++++.++.||+- .-+...+.
T Consensus 16 ~I~~~~~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~--------~~~~vi~~GG~~~~~~~~~~G~~a~~~ 87 (161)
T PF00455_consen 16 LIEDGDTIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSEN--------PNIEVILLGGEVNPKSLSFVGPIALEA 87 (161)
T ss_pred hCCCCCEEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhc--------CceEEEEeCCEEEcCCCcEECchHHHH
Confidence 34567777777777888899999887 888887777777777654 267888888843 23466677
Q ss_pred HHHhCCCCcEEccccccccccccc
Q 028779 107 CAKNVPSATVIQGYGLTETSGIAT 130 (204)
Q Consensus 107 ~~~~~~~~~~~~~yG~tE~~~~~~ 130 (204)
+++.....-++..-|.++-.++..
T Consensus 88 l~~~~~d~afi~~~gi~~~~G~~~ 111 (161)
T PF00455_consen 88 LRQFRFDKAFIGADGISEEGGLTT 111 (161)
T ss_pred HHhhccceEEecccEecCCCcccc
Confidence 766655677777777776444433
No 239
>PRK05850 acyl-CoA synthetase; Validated
Probab=55.51 E-value=55 Score=28.15 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=49.6
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC----CCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.++|++...++-+. .+...+++++..|+.++..+. ...+.+...+++.++..++..+.....+
T Consensus 57 ~~gd~V~l~~~n~~--~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~ 123 (578)
T PRK05850 57 STGDRAVILAPQGL--EYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDV 123 (578)
T ss_pred CCCCEEEEEcCCcc--cHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHH
Confidence 46899988888664 344457899999999998863 3577899999999999999888766554
No 240
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=55.02 E-value=84 Score=27.40 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=48.8
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CC-CC--HHHHHHHHHhcCceEEEechHHHHH
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AK-FD--LEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~-~~--~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
++++|++...++-... +...+++++..|+.++.. +. .. ++.+...+++.++..++..+.....
T Consensus 89 ~~~gd~V~l~~~n~~e--~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 155 (612)
T PRK12476 89 AGPGDRVAILAPQGID--YVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEA 155 (612)
T ss_pred cCCCCEEEEECCCChh--HHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHH
Confidence 6789999999988754 444578999999998866 32 32 6789999999999999987765543
No 241
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=55.01 E-value=50 Score=28.30 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=49.4
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~ 72 (204)
.+++.+|++...++-..-+ ...+++++..|+..+..+ .+....+...+++.+++.+...+...
T Consensus 69 ~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~ 132 (563)
T PRK06710 69 LGVEKGDRVAIMLPNCPQA--VIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVF 132 (563)
T ss_pred cCCCCCCEEEEECCCChHH--HHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccch
Confidence 4678899999888877653 344788899998888774 57888999999999999988776543
No 242
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=55.00 E-value=1.2e+02 Score=25.71 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=46.3
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhc--CceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..... .+..+|..|.++++-+.. ....+.+++.+. ....+..++ .....|++++
T Consensus 136 GvV~~I~p~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~l~~~~--- 212 (482)
T cd07119 136 GVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPSEVTPLTTIALFELIEEAGLPAGVVNLVTGSGATVGAELAESP--- 212 (482)
T ss_pred eeEEEEcCCchHHHHHHHHHHHHHhcCCEEEEECCccccHHHHHHHHHHHHcCCCcCcEEEEecCcHHHHHHHhcCC---
Confidence 37778888776554433 256799999999998642 455677777774 333333333 2445555442
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
.++.+.+.|.
T Consensus 213 -----~v~~V~fTGs 222 (482)
T cd07119 213 -----DVDLVSFTGG 222 (482)
T ss_pred -----CCCEEEEECc
Confidence 4556666663
No 243
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=54.52 E-value=1.3e+02 Score=25.27 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=51.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+. . ....+.+.+.+. ....+..++ ..-..|+++
T Consensus 125 Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VI~Kps~~~p~~~~~l~~~l~~ag~P~g~~~~v~g~~~~~~~~l~~~---- 200 (453)
T cd07094 125 GVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPASKTPLSALELAKILVEAGVPEGVLQVVTGEREVLGDAFAAD---- 200 (453)
T ss_pred ceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCCCcCcEEEEeCCCchHHHHHhcC----
Confidence 45777788887644322 46789999999999864 2 346677777774 333333332 234445443
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~ 111 (204)
+.++.+.+.| +.+.-+.+.+..
T Consensus 201 ----~~v~~V~fTG---s~~~g~~v~~~a 222 (453)
T cd07094 201 ----ERVAMLSFTG---SAAVGEALRANA 222 (453)
T ss_pred ----CCCCEEEEEC---cHHHHHHHHHHc
Confidence 2466677777 445555555443
No 244
>PTZ00297 pantothenate kinase; Provisional
Probab=54.40 E-value=1.2e+02 Score=29.95 Aligned_cols=81 Identities=9% Similarity=0.006 Sum_probs=60.6
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
.++++++|++...++-..- +....++++..|+.++.... +...+..++.+.++.+++.....+..+.+...
T Consensus 476 ~lGV~~GDrVaIls~N~~E--wvia~lA~~~~GaV~VPly~-t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~------ 546 (1452)
T PTZ00297 476 ALGVRPGDVIGVDCEASRN--IVILEVACALYGFTTLPLVG-KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS------ 546 (1452)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEeCCC-CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc------
Confidence 4689999999988886643 44446788899999888743 56789999999999999998888776654311
Q ss_pred ccceeeeecC
Q 028779 87 SSLKLVGSGA 96 (204)
Q Consensus 87 ~~lr~~~~~G 96 (204)
++||.+++..
T Consensus 547 ~~Lr~IIv~d 556 (1452)
T PTZ00297 547 RKLETVVYTH 556 (1452)
T ss_pred cCCcEEEEEC
Confidence 2577776654
No 245
>PRK06060 acyl-CoA synthetase; Validated
Probab=54.16 E-value=74 Score=28.34 Aligned_cols=63 Identities=14% Similarity=0.034 Sum_probs=49.0
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~ 72 (204)
.++.++|++..+++-... +...+++++..|+..+..+ .+....+...+++.++..++......
T Consensus 50 ~g~~~g~~V~i~~~~~~~--~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~ 113 (705)
T PRK06060 50 RGLSSGDRVLLCLPDSPD--LVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALR 113 (705)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHh
Confidence 578899999999887754 4445778999999888774 56788888999999998887765443
No 246
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=53.78 E-value=1.3e+02 Score=25.23 Aligned_cols=76 Identities=12% Similarity=0.029 Sum_probs=47.8
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEechH-HHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVPP-LILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p~-~~~~l~~~~~~~ 82 (204)
-+++...|+++-..... .+..+|..|.++++-+.. ....+.+++++.+ ++++.+... ....|+++
T Consensus 122 GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~---- 197 (456)
T cd07110 122 GVVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPSELTSLTELELAEIAAEAGLPPGVLNVVTGTGDEAGAPLAAH---- 197 (456)
T ss_pred eeEEEECCCChHHHHHHHHHHHHHHcCCEEEEECcccchHHHHHHHHHHHHcCCCCCcEEEEecCchHHHHHHhcC----
Confidence 47888888887665543 466899999999998652 3456677777753 334443222 44555544
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 198 ----~~v~~V~fTGs 208 (456)
T cd07110 198 ----PGIDKISFTGS 208 (456)
T ss_pred ----CCCCEEEEECC
Confidence 34566666663
No 247
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=53.38 E-value=1.4e+02 Score=25.16 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=48.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--c---eEEEec--hHHHHHHHhCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--V---THIWVV--PPLILALAKHGLV 81 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~---t~~~~~--p~~~~~l~~~~~~ 81 (204)
-+++...|+++-..... .+..+|..|.++++-+.. ....+.+++++.+ . +++.+. ......|++++
T Consensus 119 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~~l~~~~-- 196 (448)
T TIGR01780 119 GVCAAITPWNFPAAMITRKAGAALAAGCTVVVKPAEQTPLSALALARLAEQAGIPKGVLNVITGSRAKEVGKVLCTSP-- 196 (448)
T ss_pred eEEEEEcCCChHHHHHHHHHHHHHHcCCeEeeECCccchHHHHHHHHHHHHcCCCccceEEEeCCCchHHHHHHhcCC--
Confidence 47788888887665542 467899999999998652 3455677777753 2 334332 33445555542
Q ss_pred CCCCCccceeeeecCC
Q 028779 82 KKFDLSSLKLVGSGAA 97 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~ 97 (204)
.++.+.++|.
T Consensus 197 ------~i~~v~ftGs 206 (448)
T TIGR01780 197 ------LVRKISFTGS 206 (448)
T ss_pred ------CCCEEEEECc
Confidence 4556667663
No 248
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=52.71 E-value=1.4e+02 Score=25.27 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=47.4
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhc--CceEEEech---HHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVP---PLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~~~~~p---~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+. ....+..++ .....|+++
T Consensus 144 GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKPs~~tp~~~~~l~~~~~~aglP~gvv~~v~g~~~~~~~L~~~----- 218 (477)
T cd07113 144 GVVAGIVPWNFSVMIAVWKIGAALATGCTIVIKPSEFTPLTLLRVAELAKEAGIPDGVLNVVNGKGAVGAQLISH----- 218 (477)
T ss_pred ceEEEEcCCChHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHcCcCCCcEEEEecCchHHHHHhcC-----
Confidence 45777778887766544 346899999999998642 345667777774 323333332 344455544
Q ss_pred CCCccceeeeecCCC
Q 028779 84 FDLSSLKLVGSGAAP 98 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~ 98 (204)
+.++.+.++|..
T Consensus 219 ---~~v~~V~fTGS~ 230 (477)
T cd07113 219 ---PDVAKVSFTGSV 230 (477)
T ss_pred ---CCCCEEEEECcH
Confidence 245667677743
No 249
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=51.99 E-value=1.2e+02 Score=24.17 Aligned_cols=79 Identities=11% Similarity=0.065 Sum_probs=56.0
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCc--EEEEcC---CCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGS--CIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~--~~~~~~---~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 83 (204)
.+..+|++++.. |+......+..+--.|. .|++.+ +......++.++++++.....+-+.+...++.
T Consensus 116 ~i~dg~~IlTh~---~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~----- 187 (301)
T COG1184 116 RIHDGDVILTHS---FSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSR----- 187 (301)
T ss_pred hccCCCEEEEec---CcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHh-----
Confidence 456788888776 55556555666666776 666663 35788999999999999988888888888753
Q ss_pred CCCccceeeeecCCCCC
Q 028779 84 FDLSSLKLVGSGAAPLG 100 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~ 100 (204)
+..+++|++.+.
T Consensus 188 -----vd~VivGad~I~ 199 (301)
T COG1184 188 -----VDKVLVGADAIL 199 (301)
T ss_pred -----CCEEEECcccee
Confidence 335666665443
No 250
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=51.91 E-value=1.7e+02 Score=25.90 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=50.0
Q ss_pred CCCcEEEEecchhhHHHHHHH-HHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC-----ceEEEechHHHHHHHhCCC
Q 028779 11 ELDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVVPPLILALAKHGL 80 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~-~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~-----~t~~~~~p~~~~~l~~~~~ 80 (204)
.+--+++...|+++-..+..+ +..+|..|.++++-+. . ....+.+++.+.+ ++++.+.......|+++
T Consensus 248 eP~GVV~~I~PwNfPl~l~~~~iapALaAGNtVVlKPSe~tp~ta~~l~~l~~eAGlP~GvvnvV~G~~~~~~~L~~~-- 325 (604)
T PLN02419 248 EPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASVILAELAMEAGLPDGVLNIVHGTNDTVNAICDD-- 325 (604)
T ss_pred cCccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCcCcceEEEEeCChHHHHHHHhC--
Confidence 345678888998887766653 4568999999999864 2 3445667777753 33343333445555543
Q ss_pred CCCCCCccceeeeecCC
Q 028779 81 VKKFDLSSLKLVGSGAA 97 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 326 ------~~Vd~V~FTGS 336 (604)
T PLN02419 326 ------EDIRAVSFVGS 336 (604)
T ss_pred ------CCCCEEEEeCC
Confidence 24556666663
No 251
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.64 E-value=76 Score=27.24 Aligned_cols=60 Identities=7% Similarity=0.048 Sum_probs=48.9
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
++.++|++...++-+.- +...+++++..|+..+..+ ...+..+...++..++..++....
T Consensus 59 ~v~~gdrVail~~N~~e--~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~ 119 (534)
T COG0318 59 GVKPGDRVAILLPNSPE--FLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAE 119 (534)
T ss_pred CCCCCCEEEEECCCCHH--HHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEccc
Confidence 47889999999987754 3334788999999999986 458899999999999998888776
No 252
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.59 E-value=67 Score=22.21 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHH------HHHHHhCCCCCCCCCccceeeeec
Q 028779 23 FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL------ILALAKHGLVKKFDLSSLKLVGSG 95 (204)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~------~~~l~~~~~~~~~~l~~lr~~~~~ 95 (204)
.|+.|........-..|-.++-.. ...++.+.+...++++..+.++.-+ +..+.+..+. ..+... .++.|
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~--~gl~~~-~vivG 89 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDE--AGLEGI-LLYVG 89 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHH--CCCCCC-EEEec
Confidence 366666552223334566666665 4689999999999999887654432 3333322211 222333 36777
Q ss_pred CCC-CCHHHHH----HHHHhCCCCcEEcccccc
Q 028779 96 AAP-LGKELME----ECAKNVPSATVIQGYGLT 123 (204)
Q Consensus 96 G~~-l~~~~~~----~~~~~~~~~~~~~~yG~t 123 (204)
|.+ ++++-.+ ++++. + +-..||+.
T Consensus 90 G~~vi~~~d~~~~~~~l~~~--G--v~~vF~pg 118 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEM--G--FDRVFAPG 118 (134)
T ss_pred CCcCcChhhhHHHHHHHHHc--C--CCEEECcC
Confidence 764 5554433 45443 3 34455544
No 253
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=51.29 E-value=1.5e+02 Score=25.01 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=46.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--c---eEEEechHHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--V---THIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~---t~~~~~p~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ . +++.+.......|+.+
T Consensus 126 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~L~~~----- 200 (455)
T cd07148 126 GVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVKPALATPLSCLAFVDLLHEAGLPEGWCQAVPCENAVAEKLVTD----- 200 (455)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHHHcCCEEEeeCCCcccHHHHHHHHHHHHcCCCcCcEEEEeCChHHHHHHhcC-----
Confidence 46677777777654433 466889999999998642 4566777777752 2 3333333444445443
Q ss_pred CCCccceeeeecCC
Q 028779 84 FDLSSLKLVGSGAA 97 (204)
Q Consensus 84 ~~l~~lr~~~~~G~ 97 (204)
+.++.+.+.|.
T Consensus 201 ---~~v~~v~fTGs 211 (455)
T cd07148 201 ---PRVAFFSFIGS 211 (455)
T ss_pred ---CCCCEEEEECC
Confidence 24556666663
No 254
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=51.28 E-value=1.6e+02 Score=25.35 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=48.4
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ .....|+++
T Consensus 173 GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~a~~l~~~l~~aGlP~gvv~vv~g~~~~~~~~L~~~---- 248 (514)
T PRK03137 173 GVGVVISPWNFPFAIMAGMTLAAIVAGNTVLLKPASDTPVIAAKFVEVLEEAGLPAGVVNFVPGSGSEVGDYLVDH---- 248 (514)
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEEeecCchHHHHHHhcC----
Confidence 48888889888655433 467899999999998642 3456677777653 33333332 334445443
Q ss_pred CCCCccceeeeecCCC
Q 028779 83 KFDLSSLKLVGSGAAP 98 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.++|..
T Consensus 249 ----~~v~~V~fTGs~ 260 (514)
T PRK03137 249 ----PKTRFITFTGSR 260 (514)
T ss_pred ----CCcCEEEEECCc
Confidence 346677666633
No 255
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=51.01 E-value=1.3e+02 Score=24.29 Aligned_cols=88 Identities=13% Similarity=-0.009 Sum_probs=52.2
Q ss_pred CCcEEEEecchhhHHH-HHHHHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEechH-HHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFG-LAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVPP-LILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g-~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p~-~~~~l~~~~~ 80 (204)
+--+++...|.++... ....+..+|..|.++++.+.. ....+.+.+.+.. ++++..... ....|+.++
T Consensus 92 p~Gvv~~i~p~n~p~~~~~~~~~~aL~~GN~vilk~s~~~~~~~~~l~~~l~~ag~p~~~v~~~~~~~~~~~~~l~~~~- 170 (367)
T cd06534 92 PLGVVGVITPWNFPLLLAAWKLAPALAAGNTVVLKPSELTPLTALALAELLQEAGLPPGVVNVVPGGGDEVGAALLSHP- 170 (367)
T ss_pred eeeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHhcCCCcCeEEEEEcCchhHHHHHhcCC-
Confidence 3446778888887654 333477899999999998642 3566777777754 233333222 445555432
Q ss_pred CCCCCCccceeeeecCCCCCHHHHHHHHHh
Q 028779 81 VKKFDLSSLKLVGSGAAPLGKELMEECAKN 110 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~ 110 (204)
.++.+.+.| +.+..+.+.+.
T Consensus 171 -------~vd~v~~tG---s~~~~~~v~~~ 190 (367)
T cd06534 171 -------RVDKISFTG---STAVGKAIMKA 190 (367)
T ss_pred -------CcCEEEEEC---CHHHHHHHHHH
Confidence 355666666 34444444443
No 256
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=51.00 E-value=66 Score=28.08 Aligned_cols=60 Identities=5% Similarity=-0.006 Sum_probs=47.3
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CC-----HHHHHHHHHhcCceEEEech
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FD-----LEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~-----~~~~~~~i~~~~~t~~~~~p 69 (204)
.+++++|++...++-... +...+++++..|++++..+. +. +..+..++++.++..++...
T Consensus 89 ~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~ 154 (614)
T PRK08180 89 RGLSAERPLMILSGNSIE--HALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADD 154 (614)
T ss_pred cCCCCCCEEEEecCCCHH--HHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcC
Confidence 578899999998887754 44457899999999998754 44 68889999999998888754
No 257
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=50.81 E-value=1.6e+02 Score=25.15 Aligned_cols=77 Identities=14% Similarity=0.008 Sum_probs=47.7
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEec---hHHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVV---PPLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~---p~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ...+..+ ......|+++
T Consensus 134 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKPs~~tp~t~~~l~~l~~~aGlP~gvv~~v~g~~~~~~~L~~~--- 210 (487)
T PRK09457 134 PHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVAELTVKLWQQAGLPAGVLNLVQGGRETGKALAAH--- 210 (487)
T ss_pred ccEEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHhcC---
Confidence 3347888888887654322 366899999999998642 3456667777753 3333333 3344455443
Q ss_pred CCCCCccceeeeecC
Q 028779 82 KKFDLSSLKLVGSGA 96 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 211 -----~~v~~V~fTG 220 (487)
T PRK09457 211 -----PDIDGLLFTG 220 (487)
T ss_pred -----CCcCEEEEEC
Confidence 3466776766
No 258
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=50.69 E-value=1.5e+02 Score=25.44 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=47.9
Q ss_pred CCcEEEEecchhhHHHH-HHHHHhHhccCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~-~~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~~~~~p----~~~~~l~~~~~ 80 (204)
+--+++...|+++-..+ ...+..+|..|.++++.+. . ....+.+++.+. ....+..++ ..-..|+++
T Consensus 167 P~GVV~~I~P~N~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L~~~-- 244 (511)
T TIGR01237 167 PRGVAVVISPWNFPMAIAVGMTVAPIVTGNCVVLKPAETSTVIAAKIVEILIEAGLPPGVFQFVPGKGSEVGSYLVNH-- 244 (511)
T ss_pred cceeEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEEccCCCchhHHHHhcC--
Confidence 33567888888875443 3357789999999999864 2 345666777663 334444433 233445443
Q ss_pred CCCCCCccceeeeecCC
Q 028779 81 VKKFDLSSLKLVGSGAA 97 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 245 ------~~v~~V~fTGs 255 (511)
T TIGR01237 245 ------PKTHLITFTGS 255 (511)
T ss_pred ------CCCCeEEEECc
Confidence 35667766663
No 259
>PRK13391 acyl-CoA synthetase; Provisional
Probab=50.37 E-value=1e+02 Score=25.95 Aligned_cols=65 Identities=2% Similarity=-0.134 Sum_probs=51.1
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILA 74 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 74 (204)
.++.++|++..+.+-... +...+++++..|+.++..+ ......+...+++.++..+...+.....
T Consensus 44 ~g~~~~~~V~v~~~~~~~--~~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 109 (511)
T PRK13391 44 LGLKRGDHVAIFMENNLR--YLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDV 109 (511)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHH
Confidence 477889999888877754 3334678999999988875 5688999999999999998887765543
No 260
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=50.33 E-value=1.6e+02 Score=25.05 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=50.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ .....|+++
T Consensus 147 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~---- 222 (481)
T cd07141 147 GVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPAEQTPLTALYLASLIKEAGFPPGVVNVVPGYGPTAGAAISSH---- 222 (481)
T ss_pred eEEEEEccChhHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHcCcCccceEEEecCchHHHHHHhcC----
Confidence 37778888887665533 366899999999998642 3456667776642 23333322 333445443
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHH
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECA 108 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~ 108 (204)
+.++.+.++| +....+.+.
T Consensus 223 ----~~vd~V~ftG---s~~~g~~i~ 241 (481)
T cd07141 223 ----PDIDKVAFTG---STEVGKLIQ 241 (481)
T ss_pred ----CCCCEEEEEC---cHHHHHHHH
Confidence 3466777777 344444443
No 261
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=50.33 E-value=1.6e+02 Score=25.03 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=47.8
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC-----ceEEEechHHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~-----~t~~~~~p~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..+.. .+..+|..|.++++-+. . ....+.+++.+.+ ++++.+.......|++++
T Consensus 138 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~~~l~~~l~~aglP~g~~~~v~g~~~~~~~L~~~~---- 213 (477)
T TIGR01722 138 GVCAGITPFNFPAMIPLWMFPIAIACGNTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLNVVHGDKEAVDRLLEHP---- 213 (477)
T ss_pred ceEEEEccCChHHHHHHHHHHHHHhcCCEEEeeCcccChHHHHHHHHHHHHhCcCCCeEEEEeCCHHHHHHHHcCC----
Confidence 47778888887654443 24478999999999864 2 3456677777753 334443444555665542
Q ss_pred CCCccceeeeecCC
Q 028779 84 FDLSSLKLVGSGAA 97 (204)
Q Consensus 84 ~~l~~lr~~~~~G~ 97 (204)
.++.+.++|.
T Consensus 214 ----~v~~V~ftGS 223 (477)
T TIGR01722 214 ----DVKAVSFVGS 223 (477)
T ss_pred ----CcCEEEEECC
Confidence 3566777773
No 262
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=50.21 E-value=60 Score=27.15 Aligned_cols=60 Identities=12% Similarity=-0.009 Sum_probs=45.9
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
.++.++|++....+-... +...+++++..|+.++..+ ...++.+...++..++..++...
T Consensus 47 ~g~~~~~~v~~~~~~~~~--~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (503)
T PRK04813 47 LKLPDKSPIIVFGHMSPE--MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATE 107 (503)
T ss_pred hCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecc
Confidence 467788999888875543 4445788999999888775 45778888888988888887654
No 263
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=50.04 E-value=69 Score=27.24 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=47.1
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
.+++++|++...++-... +...+++++..|+.++..+ ...++.+...++..++..++..+.
T Consensus 73 ~g~~~g~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~ 134 (538)
T TIGR03208 73 LGVGRGDVVSFQLPNRWE--FTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSV 134 (538)
T ss_pred cCCCCCCEEEEECCCCHH--HHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccc
Confidence 477889999988886543 3334778999999888764 467889999999999998886553
No 264
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=49.87 E-value=1.1e+02 Score=23.19 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhHhc-cCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHHh------CCCCCCCCCccceeeee
Q 028779 23 FHVFGLAVITCGQLQ-KGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAK------HGLVKKFDLSSLKLVGS 94 (204)
Q Consensus 23 ~h~~g~~~~~~~~l~-~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~------~~~~~~~~l~~lr~~~~ 94 (204)
-|..|-.. +-..|- .|--++=.. ..-++.+.+..+++++..+.++..+-..+.. ..+....+ .++ .+..
T Consensus 116 vHdIGk~i-V~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~eeGiR-d~v-~v~v 192 (227)
T COG5012 116 VHDIGKNI-VATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEEGIR-DKV-IVMV 192 (227)
T ss_pred HHHHHHHH-HHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEechHHHHHHHHHHHHHHHHHHHcCCc-cCe-EEee
Confidence 36666655 333222 233333333 3568999999999999998887766433322 21112211 122 4667
Q ss_pred cCCCCCHHHHHHH
Q 028779 95 GAAPLGKELMEEC 107 (204)
Q Consensus 95 ~G~~l~~~~~~~~ 107 (204)
||.|++.+..+++
T Consensus 193 GGApvtq~~a~~i 205 (227)
T COG5012 193 GGAPVTQDWADKI 205 (227)
T ss_pred cCccccHHHHHHh
Confidence 8999999888876
No 265
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=49.58 E-value=1.7e+02 Score=25.03 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=47.9
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEec---hHHHHHHHhCCCCC
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVV---PPLILALAKHGLVK 82 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~---p~~~~~l~~~~~~~ 82 (204)
--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++.+ ...+..+ ......|+++
T Consensus 148 ~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~l~~~---- 223 (480)
T cd07111 148 VGVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPLTALLFAEICAEAGLPPGVLNIVTGNGSFGSALANH---- 223 (480)
T ss_pred cceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhcCCCcccEEEEeCCchHHHHHhcC----
Confidence 347888889888766544 356899999999998652 3456677777753 2333332 2334444443
Q ss_pred CCCCccceeeeecCCC
Q 028779 83 KFDLSSLKLVGSGAAP 98 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.++|..
T Consensus 224 ----~~v~~v~ftGs~ 235 (480)
T cd07111 224 ----PGVDKVAFTGST 235 (480)
T ss_pred ----CCcCEEEEECCH
Confidence 345566666633
No 266
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=48.59 E-value=82 Score=26.84 Aligned_cols=60 Identities=8% Similarity=-0.019 Sum_probs=47.0
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
.++.++|++...++-... ....+++++..|+.++..+ ......+...+++.++..++...
T Consensus 66 ~gi~~g~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~ 126 (541)
T TIGR03205 66 AGYGKDASVALYLGNTPD--HPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSD 126 (541)
T ss_pred cCCCCCCEEEEECCCChH--HHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeC
Confidence 478899999998886643 3334678888999988774 46788999999999999887653
No 267
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=48.55 E-value=1.6e+02 Score=24.58 Aligned_cols=77 Identities=19% Similarity=0.121 Sum_probs=47.9
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech-------HHHHHHHh
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP-------PLILALAK 77 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p-------~~~~~l~~ 77 (204)
+--+++...|+++-..... .+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ .....|++
T Consensus 98 P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~~~~l~~ 177 (432)
T cd07105 98 PVGVVLGIAPWNAPVILGTRAIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLNVVTHSPEDAPEVVEALIA 177 (432)
T ss_pred cceEEEEECCcCcHHHHHHHHHHHHHhcCCEEEEECCccChHHHHHHHHHHHHcCcCCCcEEEEeCCCCchHHHHHHHhc
Confidence 3456777888888655433 467899999999998642 3556677777643 33333332 24555655
Q ss_pred CCCCCCCCCccceeeeecC
Q 028779 78 HGLVKKFDLSSLKLVGSGA 96 (204)
Q Consensus 78 ~~~~~~~~l~~lr~~~~~G 96 (204)
++ .++.+.++|
T Consensus 178 ~~--------~v~~v~ftG 188 (432)
T cd07105 178 HP--------AVRKVNFTG 188 (432)
T ss_pred CC--------CCCEEEEEC
Confidence 42 455666666
No 268
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=48.44 E-value=1.8e+02 Score=25.02 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=53.2
Q ss_pred CCcEEEEecchhhHHHHHHH-HHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC--ceEEEech---HHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR--VTHIWVVP---PLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~-~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~--~t~~~~~p---~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..+..+ +..+|..|.++++-+. . ....+.+.+.+.. ...+..++ .....++.+
T Consensus 142 P~GVV~~I~PwNfP~~l~~~~ia~ALaaGN~VVlKPSe~tp~~~~~l~~~~~~aGlP~gv~~vv~G~~~~~~~l~~~--- 218 (489)
T cd07126 142 PYGPVAIITPFNFPLEIPALQLMGALFMGNKPLLKVDSKVSVVMEQFLRLLHLCGMPATDVDLIHSDGPTMNKILLE--- 218 (489)
T ss_pred cceEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHhCcCcCcEEEEeCCchhHHHHhcC---
Confidence 34577888999987755553 6689999999999864 2 3455667776642 23333332 223334332
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~ 111 (204)
+.++.+.++| +.+.-+.+....
T Consensus 219 -----~~v~~V~FTG---S~~vGr~i~~~~ 240 (489)
T cd07126 219 -----ANPRMTLFTG---SSKVAERLALEL 240 (489)
T ss_pred -----CCCCEEEEEC---CHHHHHHHHHHh
Confidence 2456677777 445555554444
No 269
>PLN02278 succinic semialdehyde dehydrogenase
Probab=48.28 E-value=1.8e+02 Score=24.98 Aligned_cols=77 Identities=10% Similarity=-0.010 Sum_probs=47.6
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-CC---HHHHHHHHHhc--CceEEEech----HHHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-FD---LEMFLRAIEKH--RVTHIWVVP----PLILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~~---~~~~~~~i~~~--~~t~~~~~p----~~~~~l~~~~~ 80 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+. .. ...+.+++.+. ....+..++ .....|+++
T Consensus 160 P~GvV~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~l~eaglP~gvv~~v~g~~~~~~~~L~~~-- 237 (498)
T PLN02278 160 PVGVVGAITPWNFPLAMITRKVGPALAAGCTVVVKPSELTPLTALAAAELALQAGIPPGVLNVVMGDAPEIGDALLAS-- 237 (498)
T ss_pred cccEEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcCCCcccEEEEecCChhhHHHHhcC--
Confidence 3347888899998765543 46789999999999864 23 34556666663 333333332 334555544
Q ss_pred CCCCCCccceeeeecC
Q 028779 81 VKKFDLSSLKLVGSGA 96 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 238 ------~~v~~V~fTG 247 (498)
T PLN02278 238 ------PKVRKITFTG 247 (498)
T ss_pred ------CCcCEEEEEC
Confidence 2455666666
No 270
>PLN02467 betaine aldehyde dehydrogenase
Probab=48.15 E-value=1.8e+02 Score=25.01 Aligned_cols=76 Identities=12% Similarity=0.010 Sum_probs=47.4
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC----CCHHHHHHHHHhcC-----ceEEEec-hHHHHHHHhCCCC
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK----FDLEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGLV 81 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~-----~t~~~~~-p~~~~~l~~~~~~ 81 (204)
--+++...|+++-..+.. .+..+|..|.++++-+. .....+.+++.+.+ ++++.+. ......|+.+
T Consensus 152 ~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~Vv~Kps~~tp~~~~~l~~~~~eag~P~gvv~~v~g~~~~~~~~L~~~--- 228 (503)
T PLN02467 152 LGVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSELASVTCLELADICREVGLPPGVLNVVTGLGTEAGAPLASH--- 228 (503)
T ss_pred CceEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHcCcCcCeEEEEeCCchhHHHHHhcC---
Confidence 346777788887665544 35579999999999864 24556677777743 3444432 2344555544
Q ss_pred CCCCCccceeeeecC
Q 028779 82 KKFDLSSLKLVGSGA 96 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 229 -----~~v~~v~fTG 238 (503)
T PLN02467 229 -----PGVDKIAFTG 238 (503)
T ss_pred -----CCCCEEEEEC
Confidence 2455666666
No 271
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=48.14 E-value=1.6e+02 Score=24.74 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=49.2
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhc--CceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~--~~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..... .+..+|..|.++++.+. . ....+.+++.+. ....+..++ .....|+++
T Consensus 121 Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~Vilkps~~~p~~~~~l~~~l~~aglP~~vv~~v~g~~~~~~~~l~~~---- 196 (457)
T cd07114 121 GVVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPSEHTPASTLELAKLAEEAGFPPGVVNVVTGFGPETGEALVEH---- 196 (457)
T ss_pred eEEEEECCCccHHHHHHHHHHHHHhcCCeEEeECCccchHHHHHHHHHHHHcCcCCCcEEEEeCCCchHHHHHhcC----
Confidence 47777778887654443 45689999999999864 2 345667777764 333333333 234445443
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHH
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAK 109 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~ 109 (204)
+.++.+.+.| +.+..+.+.+
T Consensus 197 ----~~i~~V~ftG---s~~~g~~v~~ 216 (457)
T cd07114 197 ----PLVAKIAFTG---GTETGRHIAR 216 (457)
T ss_pred ----CCCCEEEEEC---CHHHHHHHHH
Confidence 2455666666 3444444443
No 272
>PRK13390 acyl-CoA synthetase; Provisional
Probab=47.90 E-value=83 Score=26.41 Aligned_cols=62 Identities=8% Similarity=-0.039 Sum_probs=48.2
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..++.++|++...++-... +...+++++..|+..+..+ .+.+..+..++++.++..+.....
T Consensus 43 ~~gv~~gd~V~i~~~n~~~--~~~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 105 (501)
T PRK13390 43 DAGLRTGDVVALLSDNSPE--ALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAA 105 (501)
T ss_pred HcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcch
Confidence 3578899999888877754 4445788999999988775 568889999999988888776543
No 273
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=47.69 E-value=1.7e+02 Score=24.69 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=46.8
Q ss_pred CcEEEEecchhhHHHHH-HHHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEech-HHHHHHHhCCCC
Q 028779 13 DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVP-PLILALAKHGLV 81 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~-~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p-~~~~~l~~~~~~ 81 (204)
--+++...|+++-..+. ..+..+|..|.++++-+.. ....+.+++++.+ ++++.... ..-..|+++
T Consensus 131 ~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l~~~--- 207 (466)
T cd07138 131 IGVCGLITPWNWPLNQIVLKVAPALAAGCTVVLKPSEVAPLSAIILAEILDEAGLPAGVFNLVNGDGPVVGEALSAH--- 207 (466)
T ss_pred cceEEEECCCccHHHHHHHHHHHHHhcCCEEEEECCCcCcHHHHHHHHHHHHcCCCCCcEEEEeCCchhHHHHHhcC---
Confidence 34778888887654333 2467899999999998642 4566677777653 33333322 244555543
Q ss_pred CCCCCccceeeeecC
Q 028779 82 KKFDLSSLKLVGSGA 96 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 208 -----~~v~~v~fTG 217 (466)
T cd07138 208 -----PDVDMVSFTG 217 (466)
T ss_pred -----CCCCEEEEEC
Confidence 2466676666
No 274
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=47.40 E-value=1.7e+02 Score=24.60 Aligned_cols=75 Identities=12% Similarity=0.002 Sum_probs=45.4
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEec---hHHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVV---PPLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~---p~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..... .+..+|..|.++++-+.. ....+.+++.+.+ ...+..+ ......|+++
T Consensus 118 GVV~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~~~~~~~l~~~~~~aGlP~g~~~~v~g~~~~~~~l~~~----- 192 (457)
T cd07090 118 GVCAGIGAWNYPIQIASWKSAPALACGNAMVYKPSPFTPLTALLLAEILTEAGLPDGVFNVVQGGGETGQLLCEH----- 192 (457)
T ss_pred ceEEEECCCccHHHHHHHHHHHHHhcCCeeeecCCCcCcHHHHHHHHHHHHcCCCcccEEEEeCChhhHHHHhcC-----
Confidence 46677778887654433 356899999999998642 3556677777753 2333332 3334444443
Q ss_pred CCCccceeeeecC
Q 028779 84 FDLSSLKLVGSGA 96 (204)
Q Consensus 84 ~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 193 ---~~v~~v~fTG 202 (457)
T cd07090 193 ---PDVAKVSFTG 202 (457)
T ss_pred ---CCCCEEEEEC
Confidence 2455666666
No 275
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=47.18 E-value=1.2e+02 Score=28.75 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=52.4
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHHHHH
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 76 (204)
+.++|++...+|-... ....+++++..|+..+..+ ...++++...+++.+++.+...+.....+.
T Consensus 662 ~~~g~~V~i~~~n~~~--~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 727 (1146)
T PRK08633 662 LKDEENVGILLPPSVA--GALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLK 727 (1146)
T ss_pred CCCCCeEEEECCCchH--HHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHh
Confidence 5789999999887754 3334778999999987764 568899999999999999998887766654
No 276
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=47.16 E-value=1.8e+02 Score=24.77 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=46.0
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEe-chHHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWV-VPPLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~-~p~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ++++.. .+.....|+.+
T Consensus 137 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~---- 212 (488)
T TIGR02299 137 GPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEWSPLTAARLAEIAKEAGLPDGVFNLVHGFGEEAGKALVAH---- 212 (488)
T ss_pred ceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECchhchHHHHHHHHHHHHcCcChhheeEEeCCchHHHHHHhcC----
Confidence 45677778877655433 356799999999998642 3456677777753 233333 22344555443
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 213 ----~~v~~V~fTGS 223 (488)
T TIGR02299 213 ----PDVKAVSFTGE 223 (488)
T ss_pred ----CCcCEEEEECc
Confidence 34666777773
No 277
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=46.97 E-value=78 Score=26.84 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=47.1
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
..+++++|++...++-.. .+...+++++..|+..+... ...++.+...+++.++..+...+.
T Consensus 67 ~~g~~~g~~V~i~~~~~~--~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~ 129 (527)
T TIGR02275 67 KLGIGQGDTAVVQLPNIA--EFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRA 129 (527)
T ss_pred HcCCCCCCEEEEECCCcH--HHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCc
Confidence 357888999988876654 44555788999999877654 467888999999999888876543
No 278
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=46.96 E-value=1.8e+02 Score=24.63 Aligned_cols=79 Identities=11% Similarity=0.034 Sum_probs=47.9
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEec---hHHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVV---PPLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~---p~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++.+ ...+..+ ......|+++
T Consensus 123 P~GvV~~I~PwN~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~l~~~aGlP~gvv~~v~~g~~~~~~l~~~--- 199 (457)
T PRK09406 123 PLGVVLAVMPWNFPLWQVVRFAAPALMAGNVGLLKHASNVPQTALYLADLFRRAGFPDGCFQTLLVGSGAVEAILRD--- 199 (457)
T ss_pred cceeEEEECCccchHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHhCCCcCcEEEEcCCchhHHHHhcC---
Confidence 3456777888887655444 356899999999998642 3456677777753 2333322 2344445433
Q ss_pred CCCCCccceeeeecCCC
Q 028779 82 KKFDLSSLKLVGSGAAP 98 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.+.|..
T Consensus 200 -----~~i~~V~fTGs~ 211 (457)
T PRK09406 200 -----PRVAAATLTGSE 211 (457)
T ss_pred -----CCcCEEEEECcH
Confidence 246666666633
No 279
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=46.94 E-value=53 Score=27.80 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=37.0
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC----CCCHHHHHHHHHhcCceEEEechHH
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPL 71 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~ 71 (204)
.+++|.++.--|-++..-.. + -..|..++-++ +.+++.+-+.++++++..++.+|++
T Consensus 176 ~~pGd~v~vE~PtY~~~~~~---~--~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~ 236 (459)
T COG1167 176 LDPGDTVLVEDPTYPGALQA---L--EALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTF 236 (459)
T ss_pred CCCCCEEEEcCCCcHHHHHH---H--HHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCC
Confidence 44677777777766542221 1 22466666553 3578888888888888888888874
No 280
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=46.87 E-value=1.8e+02 Score=24.66 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=46.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhc--CceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+. ....+..++ .....|+++
T Consensus 137 GVv~~I~P~N~Pl~~~~~~i~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~l~~~---- 212 (473)
T cd07097 137 GVVGLITPWNFPIAIPAWKIAPALAYGNTVVFKPAELTPASAWALVEILEEAGLPAGVFNLVMGSGSEVGQALVEH---- 212 (473)
T ss_pred eeEEEEcccChHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHcCCCCcceEEeccCchHHHHHHhcC----
Confidence 46778888887665543 366899999999998642 355667777764 333333333 234445443
Q ss_pred CCCCccceeeeecC
Q 028779 83 KFDLSSLKLVGSGA 96 (204)
Q Consensus 83 ~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 213 ----~~v~~v~fTG 222 (473)
T cd07097 213 ----PDVDAVSFTG 222 (473)
T ss_pred ----CCCCEEEEEC
Confidence 3466666766
No 281
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=46.77 E-value=1.7e+02 Score=24.36 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=46.8
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEec----hHHHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVV----PPLILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~----p~~~~~l~~~~~ 80 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++.+ ...+..+ +.....|+++
T Consensus 71 P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l~~~-- 148 (409)
T PRK10090 71 ALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGN-- 148 (409)
T ss_pred cccEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHcCCCcccEEEEeCCChhHHHHHhcC--
Confidence 3357778889888654433 467899999999998652 3456677777643 2233332 2334445443
Q ss_pred CCCCCCccceeeeecC
Q 028779 81 VKKFDLSSLKLVGSGA 96 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 149 ------~~v~~V~ftG 158 (409)
T PRK10090 149 ------PKVAMVSMTG 158 (409)
T ss_pred ------CCcCEEEEEC
Confidence 3455666666
No 282
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=46.67 E-value=1.8e+02 Score=24.60 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=46.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC----CCHHHHHHHHHhc--CceEEEec---hHHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK----FDLEMFLRAIEKH--RVTHIWVV---PPLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~--~~t~~~~~---p~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..+.. .+..+|..|.++++-+. .....+.+++.+. ....+..+ +.....|+++
T Consensus 139 Gvv~~I~p~N~P~~~~~~~i~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~l~~~----- 213 (471)
T cd07139 139 GVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPSPETPLDAYLLAEAAEEAGLPPGVVNVVPADREVGEYLVRH----- 213 (471)
T ss_pred cEEEEEcCCchHHHHHHHHHHHHHhcCCEEEEECCCcCCHHHHHHHHHHHHcCCCCCcEEEEeCCHHHHHHHhcC-----
Confidence 45777788887666544 35679999999999864 2355667777764 22333333 3344445443
Q ss_pred CCCccceeeeecCC
Q 028779 84 FDLSSLKLVGSGAA 97 (204)
Q Consensus 84 ~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 214 ---~~i~~v~ftGs 224 (471)
T cd07139 214 ---PGVDKVSFTGS 224 (471)
T ss_pred ---CCCCEEEEECc
Confidence 24566777773
No 283
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=46.62 E-value=1.4e+02 Score=26.53 Aligned_cols=41 Identities=7% Similarity=-0.032 Sum_probs=30.2
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEE-ccccccccc
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETS 126 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~ 126 (204)
.+++|.+-+.-..-...-..+++..+++.++. ..|++||+-
T Consensus 292 WP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~ 333 (606)
T PLN02247 292 WPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECY 333 (606)
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceE
Confidence 46888776655555667778888788888766 589999953
No 284
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=45.85 E-value=5.7 Score=15.83 Aligned_cols=10 Identities=0% Similarity=0.212 Sum_probs=6.9
Q ss_pred ccchhhhccc
Q 028779 193 SWGFRKIMHS 202 (204)
Q Consensus 193 ~~~~~gw~~~ 202 (204)
.|...||+||
T Consensus 4 ~~~L~~WWrt 13 (14)
T PF08255_consen 4 TFSLHGWWRT 13 (14)
T ss_pred EEEEeeEEEc
Confidence 3455789886
No 285
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=45.73 E-value=1.9e+02 Score=24.52 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=51.2
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhc--CceEEEech---H-HHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVP---P-LILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~~~~~p---~-~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+.+++. ....+..++ . ....|.++
T Consensus 143 GVv~~I~p~N~P~~~~~~~i~~AL~aGN~vilKps~~~~~~~~~l~~~l~~aglp~~~~~vv~g~~~~~~~~l~~~---- 218 (473)
T cd07082 143 GVVLAIGPFNYPLNLTVSKLIPALIMGNTVVFKPATQGVLLGIPLAEAFHDAGFPKGVVNVVTGRGREIGDPLVTH---- 218 (473)
T ss_pred eEEEEECCcCcHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHcCCCccceEEEecCcHHHHHHHhcC----
Confidence 45677788777654332 467899999999998642 355667777763 223333332 2 23444432
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHHhC
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~~~ 111 (204)
+.++.+.+.| +.+..+.+.+..
T Consensus 219 ----~~v~~V~ftG---s~~~g~~i~~~a 240 (473)
T cd07082 219 ----GRIDVISFTG---STEVGNRLKKQH 240 (473)
T ss_pred ----CCCCEEEEEC---cHHHHHHHHHHh
Confidence 3466776766 445555555553
No 286
>PF00818 Ice_nucleation: Ice nucleation protein repeat; InterPro: IPR000258 Certain Gram-negative bacteria express proteins that enable them to promote nucleation of ice at relatively high temperatures (above -5C) [, ]. These proteins are localised at the outer membrane surface and can cause frost damage to many plants. The primary structure of the proteins contains a highly repetitive domain that dominates the sequence. The domain comprises a number of 48-residue repeats, which themselves contain 3 blocks of 16 residues, the first 8 of which are identical. It is thought that the repetitive domain may be responsible for aligning water molecules in the seed crystal. [.........48.residues.repeated.domain..........] / / | | \ \ AGYGSTxTagxxssli AGYGSTxTagxxsxlt AGYGSTxTaqxxsxlt [16.residues...] [16.residues...] [16.residues...] ; GO: 0009279 cell outer membrane
Probab=45.11 E-value=11 Score=15.67 Aligned_cols=9 Identities=67% Similarity=1.232 Sum_probs=6.2
Q ss_pred ccccccccc
Q 028779 119 GYGLTETSG 127 (204)
Q Consensus 119 ~yG~tE~~~ 127 (204)
.||+|++..
T Consensus 1 GYGSTqTA~ 9 (16)
T PF00818_consen 1 GYGSTQTAG 9 (16)
T ss_pred CCCcccccC
Confidence 488887643
No 287
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=44.95 E-value=1.9e+02 Score=24.28 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=52.1
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhc--CceEEEechH----HHHHHHhCCCC
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVPP----LILALAKHGLV 81 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~~~~~p~----~~~~l~~~~~~ 81 (204)
--+++...|+++-..... .+..+|..|.++++.+.. ....+.+.+.+. ....+..++. ....|+++
T Consensus 124 ~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~VI~Kps~~~p~~~~~l~~~l~~ag~P~gvv~~v~g~~~~~~~~l~~~--- 200 (453)
T cd07149 124 IGVVAAITPFNFPLNLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEAGLPKGALNVVTGSGETVGDALVTD--- 200 (453)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCcCccceEEeecCchHHHHHHhcC---
Confidence 346777888777653322 466889999999998642 345677777774 3333443332 23444443
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~ 111 (204)
+.++.+.+.| +++..+.+.+..
T Consensus 201 -----~~v~~V~ftG---s~~~g~~i~~~a 222 (453)
T cd07149 201 -----PRVRMISFTG---SPAVGEAIARKA 222 (453)
T ss_pred -----CCCCEEEEEC---CHHHHHHHHHHc
Confidence 2456677766 445555555543
No 288
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=44.65 E-value=1.9e+02 Score=24.25 Aligned_cols=78 Identities=14% Similarity=0.006 Sum_probs=47.7
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEechHHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ++++.........|+++
T Consensus 97 P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VI~Kps~~~~~~~~~l~~~~~~ag~P~g~~~~v~g~~~~~~~l~~~--- 173 (431)
T cd07095 97 PHGVMAVFGPFNFPGHLPNGHIVPALLAGNTVVFKPSELTPAVAELMVELWEEAGLPPGVLNLVQGGRETGEALAAH--- 173 (431)
T ss_pred cceEEEEECCCchHHHHHHHHHHHHHhcCCEEEeeCCCCCcHHHHHHHHHHHHhCcChhHheEEeCcHHHHHHHhcC---
Confidence 4457888889887665433 366789999999998642 3455667776643 23333323334444443
Q ss_pred CCCCCccceeeeecCC
Q 028779 82 KKFDLSSLKLVGSGAA 97 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 174 -----~~v~~v~ftGs 184 (431)
T cd07095 174 -----EGIDGLLFTGS 184 (431)
T ss_pred -----CCCCEEEEECc
Confidence 34566777773
No 289
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=44.60 E-value=2.1e+02 Score=24.75 Aligned_cols=76 Identities=8% Similarity=-0.012 Sum_probs=44.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC-----ceEEEechH-HHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVVPP-LILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~-----~t~~~~~p~-~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..+....+.+.+.|.++++-+. . ....+.+++.+.+ ++++.+... .-..|+.+
T Consensus 172 GVv~~I~PwNfP~~~~~~~~~palaGN~VVlKPs~~tp~~~~~l~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~----- 246 (522)
T cd07123 172 GFVYAVSPFNFTAIGGNLAGAPALMGNVVLWKPSDTAVLSNYLVYKILEEAGLPPGVINFVPGDGPVVGDTVLAS----- 246 (522)
T ss_pred ceEEEECCcccHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHcCcCCCcEEEEecCchHHHHHHhcC-----
Confidence 5677888888775444434443446999999764 2 4556677777753 233433232 34555554
Q ss_pred CCCccceeeeecCC
Q 028779 84 FDLSSLKLVGSGAA 97 (204)
Q Consensus 84 ~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 247 ---~~v~~V~FTGS 257 (522)
T cd07123 247 ---PHLAGLHFTGS 257 (522)
T ss_pred ---CCcCEEEEECC
Confidence 24666777773
No 290
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=44.50 E-value=1.9e+02 Score=24.36 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=33.5
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhccCcEEEEcCCC----CHHHHHHHHHhc
Q 028779 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKF----DLEMFLRAIEKH 60 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~-~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~ 60 (204)
-+++...|+++-.... ..+..+|..|.++++-+.. ....+.+++++.
T Consensus 135 Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VVlKps~~~p~~~~~l~~~~~~a 186 (468)
T cd07088 135 GVVAGILPWNFPFFLIARKLAPALVTGNTIVIKPSEETPLNALEFAELVDEA 186 (468)
T ss_pred eeEEEEccCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHc
Confidence 3677788888765443 2477899999999998642 345667777764
No 291
>PRK08308 acyl-CoA synthetase; Validated
Probab=43.76 E-value=1.2e+02 Score=24.71 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=45.0
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEech
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p 69 (204)
.++++++++..+++-... +...+++.+..|+..+..+. ...+.+...+++.++..+....
T Consensus 27 ~~~~~g~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (414)
T PRK08308 27 FQEAAGNRFAVCLKDPFD--IITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYGE 87 (414)
T ss_pred cCCCCCCEEEEECCCChH--HHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEecC
Confidence 467889999888776643 44457788999999988754 5677888888888888777543
No 292
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=43.65 E-value=2.2e+02 Score=24.76 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=47.4
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC-----ceEEEec-hHHHHHHHhCCCC
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGLV 81 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~-----~t~~~~~-p~~~~~l~~~~~~ 81 (204)
--+++...|+++-..+.. .+..+|..|.++++-+. . ....+.+++.+.+ ++++.+. +..-..|+++
T Consensus 196 ~GVV~~I~PwN~P~~l~~~~i~pALaaGN~VVlKPs~~tp~~~~~l~~ll~eaGlP~gvv~vv~g~~~~~~~~L~~~--- 272 (538)
T PLN02466 196 IGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNVVSGFGPTAGAALASH--- 272 (538)
T ss_pred ceEEEEECCCchHHHHHHHHHhHHHHcCCEEEeECCCCCcHHHHHHHHHHHhcCCCcccEEEEecCchhHHHHHhcC---
Confidence 356777888888765544 35589999999999864 2 3456667777643 3344332 2333445443
Q ss_pred CCCCCccceeeeecCC
Q 028779 82 KKFDLSSLKLVGSGAA 97 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 273 -----~~vd~V~FTGS 283 (538)
T PLN02466 273 -----MDVDKLAFTGS 283 (538)
T ss_pred -----CCcCEEEEECC
Confidence 24666777773
No 293
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=43.62 E-value=1.2e+02 Score=25.20 Aligned_cols=60 Identities=7% Similarity=-0.077 Sum_probs=46.7
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
.+++++|++....+-... ....+++++..|+..+..+ ...++.+...+++.++..+....
T Consensus 48 ~g~~~~~~v~l~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~ 108 (458)
T PRK09029 48 QGVVEGSGVALRGKNSPE--TLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLE 108 (458)
T ss_pred cCCCCCCEEEEecCCCHH--HHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 468889999888776654 3334678899999998885 56788899999999988877654
No 294
>PF04915 DltD_N: DltD N-terminal region; InterPro: IPR006999 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the N-terminal region of DltD.; PDB: 3BMA_C.
Probab=43.00 E-value=14 Score=21.79 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=11.9
Q ss_pred CCCCcEEccccccccccc
Q 028779 111 VPSATVIQGYGLTETSGI 128 (204)
Q Consensus 111 ~~~~~~~~~yG~tE~~~~ 128 (204)
+...+++..||++|-.-+
T Consensus 25 l~~~~yvPfyGSSEl~r~ 42 (62)
T PF04915_consen 25 LKDPKYVPFYGSSELSRF 42 (62)
T ss_dssp HSSS-EEEEE-SSTTTS-
T ss_pred hcCCCeeeecCcHHHhcc
Confidence 456789999999997543
No 295
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=42.88 E-value=2e+02 Score=24.09 Aligned_cols=47 Identities=13% Similarity=0.062 Sum_probs=32.4
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHh
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEK 59 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~ 59 (204)
--+++...|+++-..... .+..+|..|.++++-+.. ....+.+++++
T Consensus 119 ~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~~~l~~~~~~ 170 (450)
T cd07092 119 IGVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAELAAE 170 (450)
T ss_pred cceEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHh
Confidence 347778888887654432 466899999999998642 34556666665
No 296
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=42.58 E-value=2.1e+02 Score=24.20 Aligned_cols=75 Identities=13% Similarity=0.034 Sum_probs=45.9
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEec----hHHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVV----PPLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~----p~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ...+..+ ...-..|+++
T Consensus 135 Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~---- 210 (467)
T TIGR01804 135 GVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPSEITPLTALKVAELMEEAGLPDGVFNVVLGKGAEVGEPLVNH---- 210 (467)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHhcCCEEEeeCCccCcHHHHHHHHHHHHcCcCcCcEEEEeCCcHHHHHHHhcC----
Confidence 36677788887665543 346789999999998642 4556677777643 2333333 2344445443
Q ss_pred CCCCccceeeeecC
Q 028779 83 KFDLSSLKLVGSGA 96 (204)
Q Consensus 83 ~~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 211 ----~~v~~V~fTG 220 (467)
T TIGR01804 211 ----KDVAKVSFTG 220 (467)
T ss_pred ----CCCCEEEEEC
Confidence 2456666666
No 297
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=42.58 E-value=33 Score=22.15 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=22.1
Q ss_pred CCccccCCCceEEEEeCCCCCCCCC---CCcceEEEec
Q 028779 142 GSAGALAPGVEALIVSVDTQKPLPP---NQLGEIWLRG 176 (204)
Q Consensus 142 ~~~G~p~~~~~v~v~d~~~~~~~~~---g~~Gel~v~g 176 (204)
-+-|.|+++++|++.|..+++++.. +..|...+..
T Consensus 22 L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~ 59 (97)
T PF11974_consen 22 LSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDS 59 (97)
T ss_pred CCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecC
Confidence 3568999999999998444444432 2345444444
No 298
>PRK07787 acyl-CoA synthetase; Validated
Probab=42.22 E-value=1e+02 Score=25.62 Aligned_cols=57 Identities=5% Similarity=-0.048 Sum_probs=44.4
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
+++|++...++-. ..+...+++++..|+.++..+ ...++.+...+++.++..+...+
T Consensus 43 ~~~~~V~l~~~~~--~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~ 100 (471)
T PRK07787 43 AGARRVAVLATPT--LATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPA 100 (471)
T ss_pred ccCCEEEEECCCC--HHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecC
Confidence 4568887776655 345555789999999988875 46889999999999999888765
No 299
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=42.04 E-value=1.3e+02 Score=25.32 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=49.5
Q ss_pred EEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHh--cC---ceEEEe-chHHHHHHHhCCCCCC
Q 028779 15 VFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEK--HR---VTHIWV-VPPLILALAKHGLVKK 83 (204)
Q Consensus 15 ~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~--~~---~t~~~~-~p~~~~~l~~~~~~~~ 83 (204)
+++...|+++-..... .+..+|..|.++++.+. . ....+.+++.+ .. ++++.. .......|+.++
T Consensus 129 Vv~~i~p~n~P~~~~~~~~~~ALaaGN~VVlkps~~~~~~~~~l~~~~~~AglP~gvv~vv~g~~~~~~~~l~~~~---- 204 (462)
T PF00171_consen 129 VVLIITPWNFPLYLAVWKIAPALAAGNTVVLKPSEQAPLTALLLAELLEEAGLPPGVVNVVPGDGSEVGEALVSHP---- 204 (462)
T ss_dssp EEEEEE-SSSCTHHHHHHHHHHHHTT-EEEEEEBTTSHHHHHHHHHHHHHHTSTTTSEEEECSSTHHHHHHHHHTT----
T ss_pred ceeecccccccccccccchhhhhcccccceeeeccccccccccchhhccccccccccccccccccccccceeeecc----
Confidence 6666677766555533 36679999999999753 2 34566777766 22 344444 334566666543
Q ss_pred CCCccceeeeecCCCCCHHHHHHHHHh
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKN 110 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~l~~~~~~~~~~~ 110 (204)
.++.+.+.| +.+..+.+.+.
T Consensus 205 ----~v~~v~ftG---s~~~g~~i~~~ 224 (462)
T PF00171_consen 205 ----DVDLVSFTG---STATGRAIAKA 224 (462)
T ss_dssp ----TEEEEEEES---EHHHHHHHHHH
T ss_pred ----ccceeeecc---hhhhhhhhhhh
Confidence 566777777 34444444443
No 300
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=41.97 E-value=1.9e+02 Score=25.33 Aligned_cols=62 Identities=8% Similarity=0.006 Sum_probs=46.4
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCC---CHHHHHHHHHhcCceEEEechHHHH
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKF---DLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~---~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
++++|++...++-... +...+++++..|+.++.. +.. ....+...+++.++..++.......
T Consensus 76 ~~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 141 (631)
T PRK07769 76 TKPGDRVAILAPQNLD--YLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAE 141 (631)
T ss_pred cCCCCEEEEEcCCChH--HHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHH
Confidence 5789999888877753 444578899999988765 322 2567888999999999888776544
No 301
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=41.90 E-value=1e+02 Score=25.75 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=46.2
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~ 70 (204)
.++.++|++....+-...+ ...+++++..|+.++..+ ....+.+...+++.++..+.....
T Consensus 45 ~g~~~~~~V~i~~~~~~~~--~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 106 (502)
T TIGR01734 45 RILPKKSPIIVYGHMEPHM--LVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAE 106 (502)
T ss_pred hCCCCCCeEEEEeCCCHHH--HHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccc
Confidence 4577888888877776443 344788999999888775 457788889999999888887654
No 302
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=41.12 E-value=1.8e+02 Score=28.13 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=57.0
Q ss_pred CcEEEEecc-hhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHH------HHHHHhCCCCCCC
Q 028779 13 DYVFLCVLP-LFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL------ILALAKHGLVKKF 84 (204)
Q Consensus 13 ~d~~l~~~p-l~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~------~~~l~~~~~~~~~ 84 (204)
+.+++.+.+ =.|..|....-..--..|-.|+-.. ...++.+.+.++++++.++.++-.+ +...++.......
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g~ 812 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRRGI 812 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHhcCC
Confidence 344444443 3566666663444455677777765 4689999999999999987765433 1222222111221
Q ss_pred CCccceeeeecCCCCCHHHHHH-HHHhC
Q 028779 85 DLSSLKLVGSGAAPLGKELMEE-CAKNV 111 (204)
Q Consensus 85 ~l~~lr~~~~~G~~l~~~~~~~-~~~~~ 111 (204)
.+ .+++||.+++++..+. +...+
T Consensus 813 ---~v-~v~vGGa~~s~~~~~~~i~~~~ 836 (1178)
T TIGR02082 813 ---TI-PLLIGGAATSKTHTAVKIAPIY 836 (1178)
T ss_pred ---Cc-eEEEeccccchhHHHhhhhhhc
Confidence 23 4778899999888765 43333
No 303
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=40.95 E-value=2.1e+02 Score=24.73 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=45.8
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhc---CceEEEechHHHHHHHhCCCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH---RVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~---~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
-+++...|+++-..+.. .+..+|..|.++++-+. . ....+.+++.+. ....+..++.--..+.+.
T Consensus 146 GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~eaG~lP~gv~~~v~g~~~~~~~~------- 218 (513)
T cd07128 146 GVAVHINAFNFPVWGMLEKFAPALLAGVPVIVKPATATAYLTEAVVKDIVESGLLPEGALQLICGSVGDLLDH------- 218 (513)
T ss_pred cEEEEECCcccHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHhCCCCCCcEEEecCChHHHhcc-------
Confidence 56677778777544333 46689999999999864 2 355677777774 334444443311222221
Q ss_pred CccceeeeecCCC
Q 028779 86 LSSLKLVGSGAAP 98 (204)
Q Consensus 86 l~~lr~~~~~G~~ 98 (204)
+..++.+.+.|..
T Consensus 219 l~~~d~v~fTGS~ 231 (513)
T cd07128 219 LGEQDVVAFTGSA 231 (513)
T ss_pred cCCCCEEEEECCH
Confidence 1245567777743
No 304
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=40.90 E-value=2.3e+02 Score=24.16 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=47.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--c---eEEEec-hHHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--V---THIWVV-PPLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~---t~~~~~-p~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ . +.+.+. ......|+.+
T Consensus 146 GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~l~~aGlP~g~v~~v~g~~~~~~~~L~~~---- 221 (481)
T cd07143 146 GVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLKPSELTPLSALYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSH---- 221 (481)
T ss_pred eeEEEECCCcChHHHHHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHhcCcCcccEEEEeCCchhHHHHHhcC----
Confidence 46778888887665532 466899999999998652 3455677777653 2 333332 2334455443
Q ss_pred CCCCccceeeeecCCC
Q 028779 83 KFDLSSLKLVGSGAAP 98 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.++|..
T Consensus 222 ----~~vd~V~fTGs~ 233 (481)
T cd07143 222 ----MDIDKVAFTGST 233 (481)
T ss_pred ----CCCCEEEEECch
Confidence 346667777733
No 305
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=40.72 E-value=2.2e+02 Score=23.97 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=47.8
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~ 80 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++.+ ...+..++ .....|+++
T Consensus 119 P~GvV~~I~p~N~P~~~~~~~i~~ALaaGN~Vi~Kps~~~p~~~~~l~~~~~~aG~P~g~~~~v~g~~~~~~~~L~~~-- 196 (454)
T cd07118 119 PIGVVGIITPWNFPFLILSQKLPFALAAGCTVVVKPSEFTSGTTLMLAELLIEAGLPAGVVNIVTGYGATVGQAMTEH-- 196 (454)
T ss_pred cceEEEEECCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHhcCCCccceEEEecCCchHHHHHhcC--
Confidence 3347888889888766533 466899999999998642 3456677777753 23333332 234445443
Q ss_pred CCCCCCccceeeeecC
Q 028779 81 VKKFDLSSLKLVGSGA 96 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 197 ------~~v~~v~ftG 206 (454)
T cd07118 197 ------PDVDMVSFTG 206 (454)
T ss_pred ------CCCCEEEEEC
Confidence 2455666666
No 306
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=40.66 E-value=2.2e+02 Score=24.00 Aligned_cols=76 Identities=11% Similarity=0.018 Sum_probs=46.0
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHh---cCceEEEech----HHHHHHHhCCC
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEK---HRVTHIWVVP----PLILALAKHGL 80 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~---~~~t~~~~~p----~~~~~l~~~~~ 80 (204)
--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++ .....+..++ .....|++++
T Consensus 118 ~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~vvlKps~~~~~~~~~l~~~~~~aag~P~g~~~~v~g~~~~~~~~l~~~~- 196 (455)
T cd07120 118 MGVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAEIPSLPAGVVNLFTESGSEGAAHLVASP- 196 (455)
T ss_pred ceeEEEECCCchHHHHHHHHHHHHHHcCCEEEeECCCCChHHHHHHHHHHHHhcCCCccceEEEecCchhHHHHHhcCC-
Confidence 346777888887655444 466799999999998642 34566677776 2223333222 3455555442
Q ss_pred CCCCCCccceeeeecC
Q 028779 81 VKKFDLSSLKLVGSGA 96 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G 96 (204)
.++.+.++|
T Consensus 197 -------~v~~v~fTG 205 (455)
T cd07120 197 -------DVDVISFTG 205 (455)
T ss_pred -------CCCEEEEEC
Confidence 455666666
No 307
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=40.53 E-value=1.1e+02 Score=27.25 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=48.8
Q ss_pred CCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH
Q 028779 10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73 (204)
Q Consensus 10 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~ 73 (204)
..++|++...+|-... +...+++++..|+..+... ...+..+...+++.++..++.......
T Consensus 252 ~~~gd~Val~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~ 314 (718)
T PRK08043 252 SVEGERIGLMLPNATI--SAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLD 314 (718)
T ss_pred cCCCceEEEEcCCcHH--HHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHh
Confidence 4789999999987754 4445778898998877764 567899999999999999888766543
No 308
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=40.47 E-value=2.8e+02 Score=25.05 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=57.5
Q ss_pred HHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEec-hHHHHHHHhCCCCCCCCCccceeeeecCCCCCHHHHHHHHH
Q 028779 32 TCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVV-PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109 (204)
Q Consensus 32 ~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~-p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~ 109 (204)
.+++...|+.++.. +...++.+..++....+.+++.- +..+..|++... ...+++||.++.-.++ +.++.++..+
T Consensus 150 ~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~--~~~~~~LK~iI~~~~~-~~~~~~~~~~ 226 (691)
T KOG1256|consen 150 EMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKE--NDSLPSLKAIIQLDEP-SDELKEKAEN 226 (691)
T ss_pred HHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcc--cccCccceeEEEecCC-chhhhhhhhc
Confidence 44555566665554 66789999999999999998887 999999987643 2236789988887755 4444554444
Q ss_pred hCCCCcEEcc
Q 028779 110 NVPSATVIQG 119 (204)
Q Consensus 110 ~~~~~~~~~~ 119 (204)
. +++++..
T Consensus 227 ~--gv~v~S~ 234 (691)
T KOG1256|consen 227 N--GVEVYSW 234 (691)
T ss_pred C--CeEEEEH
Confidence 3 4555433
No 309
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=40.43 E-value=38 Score=24.62 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=27.6
Q ss_pred chHHHHHHHhCCCCCCCCCccceeeeecCCC-CCHHHHHHHHHhCCCCcEE
Q 028779 68 VPPLILALAKHGLVKKFDLSSLKLVGSGAAP-LGKELMEECAKNVPSATVI 117 (204)
Q Consensus 68 ~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~-l~~~~~~~~~~~~~~~~~~ 117 (204)
-+.++..+++.... ...|.+++||.+ .-....+++++.+|+..+.
T Consensus 33 G~dl~~~l~~~~~~-----~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~ 78 (177)
T TIGR00696 33 GPDLMEELCQRAGK-----EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIV 78 (177)
T ss_pred hHHHHHHHHHHHHH-----cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEE
Confidence 45556666554321 236677777754 4456677777778877765
No 310
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=40.40 E-value=2e+02 Score=25.80 Aligned_cols=78 Identities=10% Similarity=-0.030 Sum_probs=45.3
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC---ceEEEechHHHHHHHhCCCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR---VTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~---~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
-+++...|+++-..+.. .+..+|..|.++++-+. . ....+.+++.+-+ ...+..++.-...+...
T Consensus 146 Gvv~~I~pwN~P~~~~~~~~~~ALaaGN~Vv~KPs~~tp~~~~~l~~~~~~aG~lP~gv~~~v~g~~~~~~~~------- 218 (663)
T TIGR02278 146 GVAVQINAFNFPVWGLLEKFAPAFLAGVPTLAKPATPTAYVAEALVRTMVESGLLPEGSLQLICGSAGDLLDH------- 218 (663)
T ss_pred ceEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHhc-------
Confidence 56666778887654433 46689999999998764 3 3455667777743 33444444322222222
Q ss_pred CccceeeeecCCC
Q 028779 86 LSSLKLVGSGAAP 98 (204)
Q Consensus 86 l~~lr~~~~~G~~ 98 (204)
+++++.+.+.|..
T Consensus 219 ~~~~~~V~FTGS~ 231 (663)
T TIGR02278 219 LDHRDVVAFTGSA 231 (663)
T ss_pred CCCCCEEEEECCH
Confidence 1234567777743
No 311
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=40.26 E-value=2.2e+02 Score=23.86 Aligned_cols=49 Identities=14% Similarity=-0.002 Sum_probs=34.5
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR 61 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~ 61 (204)
--+++...|+++-..... .+..+|..|.++++-+.. ....+.+.+.+..
T Consensus 120 ~Gvv~~I~p~N~P~~~~~~~l~~ALaaGN~vilKps~~~p~~~~~l~~~l~~ag 173 (453)
T cd07099 120 YGVVGVISPWNYPLLTPMGDIIPALAAGNAVVLKPSEVTPLVGELLAEAWAAAG 173 (453)
T ss_pred ceEEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHcC
Confidence 347788888887654333 467899999999998642 3556677777754
No 312
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=40.07 E-value=2.3e+02 Score=24.02 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=47.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEech-HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVP-PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p-~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ++++.+.. ..-..|.++
T Consensus 143 GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~---- 218 (476)
T cd07142 143 GVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLNIVTGFGPTAGAAIASH---- 218 (476)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCcccHHHHHHHHHHHHcCcCcccEEEEeCCchhHHHHHhcC----
Confidence 47788888887665443 356799999999998652 3456677777753 33333322 234445443
Q ss_pred CCCCccceeeeecCCC
Q 028779 83 KFDLSSLKLVGSGAAP 98 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.++|..
T Consensus 219 ----~~v~~v~fTGs~ 230 (476)
T cd07142 219 ----MDVDKVAFTGST 230 (476)
T ss_pred ----CCCCEEEEECcH
Confidence 246667777733
No 313
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=40.04 E-value=2.1e+02 Score=25.63 Aligned_cols=77 Identities=13% Similarity=-0.016 Sum_probs=45.8
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhc---CceEEEechHHHHHHHhCCCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKH---RVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~---~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
-+++...|+++-..+.. .+..+|..|.++++-+. . ....+.+++.+- ....+..++..-..+.+.
T Consensus 150 GVv~~I~PwNfP~~~~~~~i~pALaaGN~VV~KPse~tp~~a~~l~~~~~eaG~~P~gv~~vv~g~~~~~~~~------- 222 (675)
T PRK11563 150 GVAVHINAFNFPVWGMLEKLAPAFLAGVPAIVKPATATAYLTEAVVRLIVESGLLPEGALQLICGSAGDLLDH------- 222 (675)
T ss_pred ceEEEECCCchHHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCCcEEEeeCCHHHHhhc-------
Confidence 46666778887554433 46689999999999864 2 345667777763 333444444322222222
Q ss_pred CccceeeeecCC
Q 028779 86 LSSLKLVGSGAA 97 (204)
Q Consensus 86 l~~lr~~~~~G~ 97 (204)
+..++.+.+.|.
T Consensus 223 ~~~i~~v~FTGS 234 (675)
T PRK11563 223 LDGQDVVTFTGS 234 (675)
T ss_pred CCCCCEEEEECc
Confidence 124567777773
No 314
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=39.86 E-value=2.5e+02 Score=24.36 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=44.0
Q ss_pred cEEEEecchhhHHHHHHHHHh-HhccCcEEEEcCCC----CHHHHHHHHHhc--CceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAVITCG-QLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~~~~~-~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.....+ +| .|.++++-+.. ....+.+++.+. ....+..++ ..-..|+++
T Consensus 172 GVv~~I~PwN~P~~~~~~~~a~AL-aGN~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~vv~g~~~~~g~~Lv~~---- 246 (533)
T TIGR01236 172 GFVYAISPFNFTAIAGNLPGAPAL-MGNTVIWKPSITATLSNYLTMRILEEAGLPPGVINFVPGDGFAVSDVVLAD---- 246 (533)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHH-hCCeEEEECCCcCCHHHHHHHHHHHhcCCCCCcEEEEecCcHHHHHHHhcC----
Confidence 566777888876544443333 45 79999998642 345667777764 333333332 334455554
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 247 ----p~v~~V~FTGS 257 (533)
T TIGR01236 247 ----PRLAGIHFTGS 257 (533)
T ss_pred ----CCcCEEEEECC
Confidence 34666777774
No 315
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=39.79 E-value=2.3e+02 Score=23.97 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=45.7
Q ss_pred EEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCCCCC
Q 028779 15 VFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGLVKK 83 (204)
Q Consensus 15 ~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~~~~ 83 (204)
+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ .....|+++
T Consensus 144 Vv~~I~p~N~P~~~~~~~~~~AL~aGN~VvlKps~~~p~~~~~l~~~~~~aglP~g~~~~v~g~~~~~~~~L~~~----- 218 (476)
T cd07091 144 VCGQIIPWNFPLLMLAWKLAPALAAGNTVVLKPAEQTPLSALYLAELIKEAGFPPGVVNIVPGFGPTAGAAISSH----- 218 (476)
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHcCcCCCcEEEEeCCChhHHHHHhcC-----
Confidence 6778888887655443 356799999999998652 3456677777742 23333332 233444443
Q ss_pred CCCccceeeeecCC
Q 028779 84 FDLSSLKLVGSGAA 97 (204)
Q Consensus 84 ~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 219 ---~~vd~V~fTGs 229 (476)
T cd07091 219 ---MDVDKIAFTGS 229 (476)
T ss_pred ---CCcCEEEEECc
Confidence 34666777774
No 316
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=39.78 E-value=2.3e+02 Score=23.91 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=45.7
Q ss_pred EEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech---H-HHHHHHhCCCCCC
Q 028779 15 VFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP---P-LILALAKHGLVKK 83 (204)
Q Consensus 15 ~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p---~-~~~~l~~~~~~~~ 83 (204)
+++...|+++-..... .+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ . ....|+++
T Consensus 126 VV~~I~P~N~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~~~l~~~~~~aglP~g~~~~v~g~~~~~~~~l~~~----- 200 (459)
T cd07089 126 VVAAITPWNFPFFLNLAKLAPALAAGNTVVLKPAPDTPLSALLLGEIIAETDLPAGVVNVVTGSDNAVGEALTTD----- 200 (459)
T ss_pred EEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHcCCCccceEEEecCcHHHHHHHhcC-----
Confidence 7777788887644433 467899999999998642 3456677777743 23333322 2 34445443
Q ss_pred CCCccceeeeecCC
Q 028779 84 FDLSSLKLVGSGAA 97 (204)
Q Consensus 84 ~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 201 ---~~~~~v~ftGs 211 (459)
T cd07089 201 ---PRVDMVSFTGS 211 (459)
T ss_pred ---CCCCEEEEECc
Confidence 24556666663
No 317
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=39.44 E-value=2.3e+02 Score=23.83 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=43.5
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC-C---HHHHHHHHHh-cCceEEEech---H-HHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF-D---LEMFLRAIEK-HRVTHIWVVP---P-LILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~-~---~~~~~~~i~~-~~~t~~~~~p---~-~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. . ...+.+++++ .....+..++ . .-..|+++
T Consensus 118 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~~lP~gvv~~v~g~~~~~~~~l~~~----- 192 (456)
T cd07107 118 GVVARIVAFNHPLMFAAAKIAAPLAAGNTVVVKPPEQAPLSALRLAELAREVLPPGVFNILPGDGATAGAALVRH----- 192 (456)
T ss_pred eEEEEECCcccHHHHHHHHHhHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCcCcEEEEeCCCchHHHHHhcC-----
Confidence 47778888877654433 466899999999998652 2 3445555554 2323333322 1 34445443
Q ss_pred CCCccceeeeecC
Q 028779 84 FDLSSLKLVGSGA 96 (204)
Q Consensus 84 ~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 193 ---~~i~~v~fTG 202 (456)
T cd07107 193 ---PDVKRIALIG 202 (456)
T ss_pred ---CCCCEEEEEC
Confidence 2455666666
No 318
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=39.43 E-value=2.4e+02 Score=24.06 Aligned_cols=75 Identities=8% Similarity=-0.024 Sum_probs=46.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEech-HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVP-PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p-~~~~~l~~~~~~~ 82 (204)
-++....|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ++++.+.. .....|++++
T Consensus 148 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aglP~gvv~vv~g~~~~~~~~l~~~~--- 224 (482)
T PRK11241 148 GVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGIPAGVFNVVTGSAGAVGGELTSNP--- 224 (482)
T ss_pred eEEEEECCCcChHHHHHHHHHHHHHhCCEEEEECCCCChHHHHHHHHHHHHcCCCcccEEEEecCCchhHHHHhcCC---
Confidence 47888889888766554 355789999999998652 2345566666642 33333322 3345555542
Q ss_pred CCCCccceeeeecC
Q 028779 83 KFDLSSLKLVGSGA 96 (204)
Q Consensus 83 ~~~l~~lr~~~~~G 96 (204)
.++.+.++|
T Consensus 225 -----~v~~v~FTG 233 (482)
T PRK11241 225 -----LVRKLSFTG 233 (482)
T ss_pred -----CCCEEEEEC
Confidence 455666666
No 319
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=39.13 E-value=2.6e+02 Score=24.90 Aligned_cols=41 Identities=10% Similarity=0.010 Sum_probs=29.8
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEE-ccccccccc
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETS 126 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~ 126 (204)
.+++|.+-+.-..-...-...++..+++.++. ..|++||+-
T Consensus 303 WP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~ 344 (612)
T PLN02620 303 WPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECY 344 (612)
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceE
Confidence 46888776655555666667777778888765 789999953
No 320
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=38.56 E-value=1.4e+02 Score=25.01 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=43.3
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
..+|+++..++-.. .+...+++++..|+.++..+ ......+..++++.++..+....
T Consensus 43 ~~~~~V~i~~~n~~--e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (452)
T PRK07445 43 RTPPKILLAESDPL--QFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGLD 100 (452)
T ss_pred CCCCeEEEecCCCH--HHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEecC
Confidence 45888877776542 33444788899999999875 56888999999999998887643
No 321
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=38.42 E-value=2.3e+02 Score=23.40 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=51.6
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCC----CHHHHHHHHHhc-----CceEEEech----HHHHHHHhC
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH-----RVTHIWVVP----PLILALAKH 78 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~-----~~t~~~~~p----~~~~~l~~~ 78 (204)
+--+++...|+++-......+..+|..|.++++-+.. ....+.+++++. ....+..++ .....|+.+
T Consensus 100 P~Gvv~~i~p~N~P~~~~~~~~~aL~aGN~vilKps~~~p~~~~~l~~~~~~~~~~g~p~~~v~~v~~~~~~~~~~l~~~ 179 (397)
T cd07077 100 PIGVTMHILPSTNPLSGITSALRGIATRNQCIFRPHPSAPFTNRALALLFQAADAAHGPKILVLYVPHPSDELAEELLSH 179 (397)
T ss_pred cceEEEEEeCCCCchHHHHHHHHHHHcCCcEEEEcCcchhhHHHHHHHHHHHHhhcCCCCceEEEecCCCHHHHHHHHcC
Confidence 3346677778777665333477899999999998642 344455555542 122333333 244455544
Q ss_pred CCCCCCCCccceeeeecCCCCCHHHHHHHHHhC
Q 028779 79 GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 79 ~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~ 111 (204)
+ .++.+++.| +.+..+.+.+..
T Consensus 180 ~--------~vd~v~ftG---s~~~~~~v~~~~ 201 (397)
T cd07077 180 P--------KIDLIVATG---GRDAVDAAVKHS 201 (397)
T ss_pred C--------CCCEEEecC---CHHHHHHHHHcC
Confidence 2 355666666 445666666654
No 322
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=38.34 E-value=2.5e+02 Score=23.88 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=45.3
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEec-hHHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~-p~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ++++.+. ...-..|+++
T Consensus 146 GvV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~---- 221 (484)
T cd07144 146 GVCGQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAENTPLSLLYFANLVKEAGFPPGVVNIIPGYGAVAGSALAEH---- 221 (484)
T ss_pred eEEEEECcCCCHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHhCcCCCcEEEEecCCchHHHHHhcC----
Confidence 46778888887654333 366899999999998652 3455667777643 2333331 2334445443
Q ss_pred CCCCccceeeeecC
Q 028779 83 KFDLSSLKLVGSGA 96 (204)
Q Consensus 83 ~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 222 ----~~vd~V~fTG 231 (484)
T cd07144 222 ----PDVDKIAFTG 231 (484)
T ss_pred ----CCcCEEEEEC
Confidence 2455666666
No 323
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=38.33 E-value=1.1e+02 Score=29.77 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=46.8
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEec
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVV 68 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~ 68 (204)
.++.++|++...++-... +...+++++..|+..+..+ ...+.++...+++.++..+...
T Consensus 290 ~gv~~g~~V~i~~~~~~~--~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~ 349 (1389)
T TIGR03443 290 TGIKRGDVVMIYAYRGVD--LVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVI 349 (1389)
T ss_pred hCCCCCCEEEEEecCCHH--HHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEe
Confidence 478899999998887754 3445789999999988875 4677888888998888877654
No 324
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=38.24 E-value=1.8e+02 Score=28.21 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=55.5
Q ss_pred cEEEEecc-hhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHHH------HHHhCCCCCCCC
Q 028779 14 YVFLCVLP-LFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL------ALAKHGLVKKFD 85 (204)
Q Consensus 14 d~~l~~~p-l~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~------~l~~~~~~~~~~ 85 (204)
.+++.+.+ =.|..|....-..--..|-.++... ...++.+.+.+.++++.++.++-.+-. .+++.......
T Consensus 753 kvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~m~~~i~~L~~~g~- 831 (1229)
T PRK09490 753 KILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGLSGLITPSLDEMVHVAKEMERQGF- 831 (1229)
T ss_pred eEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcchhhHHHHHHHHHHHHhcCC-
Confidence 34444433 3566676663444445677777765 568999999999999998776543322 22222111211
Q ss_pred CccceeeeecCCCCCHHH-HHHHHHhC
Q 028779 86 LSSLKLVGSGAAPLGKEL-MEECAKNV 111 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~-~~~~~~~~ 111 (204)
.+ .+++||.++++.. ..++...+
T Consensus 832 --~v-~v~vGGa~~s~~~ta~~i~~~y 855 (1229)
T PRK09490 832 --TI-PLLIGGATTSKAHTAVKIAPNY 855 (1229)
T ss_pred --CC-eEEEEeeccchhhhhhhhhhcc
Confidence 33 3778888988755 45544443
No 325
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=38.08 E-value=2.4e+02 Score=23.68 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=45.8
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhc--CceEEEec----hHHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKH--RVTHIWVV----PPLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~--~~t~~~~~----p~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++. ....+..+ ...-..|+++
T Consensus 125 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~ag~p~g~~~~v~g~~~~~~~~l~~~---- 200 (456)
T cd07145 125 GVVGAITPFNFPANLFAHKIAPAIAVGNSVVVKPSSNTPLTAIELAKILEEAGLPPGVINVVTGYGSEVGDEIVTN---- 200 (456)
T ss_pred eeEEEECCCChHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHcCCCcccEEEEeCCCchHHHHHhcC----
Confidence 46777888887654433 467899999999998652 345667777774 33333332 2233445543
Q ss_pred CCCCccceeeeecC
Q 028779 83 KFDLSSLKLVGSGA 96 (204)
Q Consensus 83 ~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 201 ----~~v~~V~fTG 210 (456)
T cd07145 201 ----PKVNMISFTG 210 (456)
T ss_pred ----CCCCEEEEEC
Confidence 2456666666
No 326
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=37.96 E-value=2.5e+02 Score=23.79 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=44.5
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHh-cCceEEEech----HHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEK-HRVTHIWVVP----PLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~-~~~t~~~~~p----~~~~~l~~~~~~~~ 83 (204)
-++++..|+++-..... .+..+|..|.++++-+. . ....+.+++.+ .....+..++ .....|+++
T Consensus 140 GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~alP~gv~~~v~g~~~~~~~~l~~~----- 214 (475)
T PRK13473 140 GVVASIAPWNYPLMMAAWKLAPALAAGNTVVLKPSEITPLTALKLAELAADILPPGVLNVVTGRGATVGDALVGH----- 214 (475)
T ss_pred eeEEEEccCChHHHHHHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHhCCcCcEEEEecCchHHHHHHhcC-----
Confidence 37778888887665544 35689999999999864 2 23445555554 3333333332 344445443
Q ss_pred CCCccceeeeecC
Q 028779 84 FDLSSLKLVGSGA 96 (204)
Q Consensus 84 ~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 215 ---~~vd~V~fTG 224 (475)
T PRK13473 215 ---PKVRMVSLTG 224 (475)
T ss_pred ---CCCCEEEEEC
Confidence 2456666666
No 327
>PRK06145 acyl-CoA synthetase; Validated
Probab=37.68 E-value=1.6e+02 Score=24.58 Aligned_cols=62 Identities=5% Similarity=-0.000 Sum_probs=46.5
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL 71 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~ 71 (204)
.++.++|++...++-.- .+...+++++..|+..+..+ ......+...+++.++..+...+..
T Consensus 47 ~g~~~~~~v~i~~~~~~--~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~ 109 (497)
T PRK06145 47 RGIGQGDVVALLMKNSA--AFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF 109 (497)
T ss_pred cCCCCCCEEEEECCCCH--HHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccch
Confidence 46778899888876653 34444778899998888775 5688889999999888888765443
No 328
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=37.62 E-value=1.7e+02 Score=24.46 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=33.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR 61 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~ 61 (204)
-+.....|+++-..++. -.-++|..|+|+++-|.. +...+++..++-+
T Consensus 161 GV~alItPWNFP~AMItRK~gAALAaGCTvVvkPs~~TPlsaLala~lA~~AG 213 (503)
T KOG2451|consen 161 GVVALITPWNFPAAMITRKAGAALAAGCTVVVKPSEDTPLSALALAKLAEEAG 213 (503)
T ss_pred eeEEEecCcCChHHHHHhHHHHHHhcCceEEEccCCCCchHHHHHHHHHHHcC
Confidence 35566788888877765 455799999999998753 3445555555533
No 329
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=36.77 E-value=1.9e+02 Score=27.49 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=49.1
Q ss_pred cCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEechHHH
Q 028779 9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLI 72 (204)
Q Consensus 9 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~ 72 (204)
+++++|++...+|-... ....+++++..|+..+..+ ...++++...+++.+++.+...+...
T Consensus 678 g~~~gd~V~i~~~n~~~--~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 740 (1140)
T PRK06814 678 NTPPGENVGVMLPNANG--AAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFI 740 (1140)
T ss_pred cCCCCCeEEEEcCCchH--HHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHH
Confidence 57889999888887754 4445788999998877664 56889999999999999998876544
No 330
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=36.76 E-value=1.2e+02 Score=29.12 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=51.6
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
.++.++|++..+++-... +...+++++..|+..+..+. ....++...+++.++..+.........+
T Consensus 503 ~g~~~g~~V~l~~~~~~~--~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~ 569 (1296)
T PRK10252 503 RGVKPGDSVAVALPRSVF--LTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRF 569 (1296)
T ss_pred cCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhc
Confidence 478889999988877654 44457899999999988864 5667888999999999988877655443
No 331
>PRK07868 acyl-CoA synthetase; Validated
Probab=36.52 E-value=1.9e+02 Score=27.20 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=49.0
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 75 (204)
..++.++|++...++-.-. +...+++++..|+..+..+.- ..+..++++.++..++..+..+..+
T Consensus 491 ~~Gv~~Gd~VaI~~~n~~e--~v~a~lA~~~aGav~vpl~p~--~~l~~il~~s~~~~li~~~~~~~~~ 555 (994)
T PRK07868 491 AVGVRQGDRVGVLMETRPS--ALVAIAALSRLGAVAVLMPPD--TDLAAAVRLGGVTEIITDPTNLEAA 555 (994)
T ss_pred HcCCCCCCEEEEEcCCCHH--HHHHHHHHHhcCCEEEEeCCc--hhHHHHHhccCCeEEEEChHHHHHH
Confidence 3578899999988886653 344578999999999988752 4677788888888888876665543
No 332
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=36.35 E-value=2.7e+02 Score=23.76 Aligned_cols=78 Identities=14% Similarity=0.062 Sum_probs=46.5
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC-----ceEEEech-HHHHHHHhCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR-----VTHIWVVP-PLILALAKHGL 80 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~-----~t~~~~~p-~~~~~l~~~~~ 80 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+. . ....+.+++.+.+ ++++.+.. .....|+.+
T Consensus 147 P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~-- 224 (486)
T cd07140 147 PIGVCGIVIPWNYPLMMLAWKMAACLAAGNTVVLKPAQVTPLTALKFAELTVKAGFPKGVINILPGSGSLVGQRLSDH-- 224 (486)
T ss_pred ccceEEEEcCCchHHHHHHHHHHHHHHhCCEEEEECCccCcHHHHHHHHHHHHcCcCCCcEEEEecCchHHHHHHhcC--
Confidence 3356777788887654333 35678999999999864 2 3455667776642 23333322 233455443
Q ss_pred CCCCCCccceeeeecCC
Q 028779 81 VKKFDLSSLKLVGSGAA 97 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 225 ------~~v~~v~ftGs 235 (486)
T cd07140 225 ------PDVRKLGFTGS 235 (486)
T ss_pred ------CCCCEEEEECc
Confidence 24566777773
No 333
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=35.98 E-value=2.7e+02 Score=23.62 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=51.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+. . ....+.+++++.+ ...+..++ .....|+++
T Consensus 141 Gvv~~I~P~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~---- 216 (472)
T TIGR03250 141 GVISAITPFNHPMNQVAHKIAPAIATNNRMVVKPSEKTPLSALYLADILYEAGLPPQMLQVVTGDPREIADELITN---- 216 (472)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHcCCCcccEEEEecCchHHHHHHhcC----
Confidence 56777888887764433 36789999999999864 2 3446677777753 23333332 334555543
Q ss_pred CCCCccceeeeecCCCCCHHHHHHHHH
Q 028779 83 KFDLSSLKLVGSGAAPLGKELMEECAK 109 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~~l~~~~~~~~~~ 109 (204)
+.++.+.++| +...-+.+.+
T Consensus 217 ----~~v~~v~fTG---s~~~g~~i~~ 236 (472)
T TIGR03250 217 ----PHVDLVTFTG---GVAIGKYIAA 236 (472)
T ss_pred ----CCCCEEEEEC---cHHHHHHHHH
Confidence 3466677777 3344444443
No 334
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.95 E-value=1.9e+02 Score=21.73 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=55.6
Q ss_pred HHhHhccCcEEEEcCCCCHHHHHHHHHhcCceEEEec--hHHHHHHHhCCCCCCCCCccceeeeecCCCCCHHHHHHHHH
Q 028779 32 TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV--PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109 (204)
Q Consensus 32 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~--p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~ 109 (204)
.-.+.-.|+..++.|.++++ +.+...++++-++-+. |+-+....+. . .+-++. +-.+.+.++.++.++.
T Consensus 81 ~~~a~~aGA~FivsP~~~~~-v~~~~~~~~i~~iPG~~T~~E~~~A~~~----G--ad~vkl--FPa~~~G~~~ik~l~~ 151 (213)
T PRK06552 81 ARLAILAGAQFIVSPSFNRE-TAKICNLYQIPYLPGCMTVTEIVTALEA----G--SEIVKL--FPGSTLGPSFIKAIKG 151 (213)
T ss_pred HHHHHHcCCCEEECCCCCHH-HHHHHHHcCCCEECCcCCHHHHHHHHHc----C--CCEEEE--CCcccCCHHHHHHHhh
Confidence 34567789998888877766 4555667777776553 4444433322 1 223432 3355677888999999
Q ss_pred hCCCCcEEcccccccc
Q 028779 110 NVPSATVIQGYGLTET 125 (204)
Q Consensus 110 ~~~~~~~~~~yG~tE~ 125 (204)
.||+.++...-|.++.
T Consensus 152 ~~p~ip~~atGGI~~~ 167 (213)
T PRK06552 152 PLPQVNVMVTGGVNLD 167 (213)
T ss_pred hCCCCEEEEECCCCHH
Confidence 9988888888777653
No 335
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=35.91 E-value=2.7e+02 Score=23.57 Aligned_cols=78 Identities=9% Similarity=0.004 Sum_probs=46.0
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-CC---HHHHHHHHHhcC--c---eEEEechHHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-FD---LEMFLRAIEKHR--V---THIWVVPPLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~~---~~~~~~~i~~~~--~---t~~~~~p~~~~~l~~~~~~ 81 (204)
|--+++...|+++-..+.. .+..+|..|.++++-+. .. ...+.+++.+.+ . +++.+.......++.+
T Consensus 126 P~GvV~~I~PwN~P~~~~~~~~~~ALaaGN~vv~KPs~~tp~~~~~l~~~~~~aGlP~gv~~~v~g~~~~~~~l~~~--- 202 (462)
T PRK13968 126 PLGTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMIND--- 202 (462)
T ss_pred ccceEEEEcCCchHHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHcCcCcCcEEEEecCchhhHHHhcC---
Confidence 3457778888887654444 46679999999999764 33 345566666642 2 3333222223334332
Q ss_pred CCCCCccceeeeecCC
Q 028779 82 KKFDLSSLKLVGSGAA 97 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.+.|.
T Consensus 203 -----~~v~~V~fTGs 213 (462)
T PRK13968 203 -----SRIAAVTVTGS 213 (462)
T ss_pred -----CCCCEEEEECC
Confidence 34667777774
No 336
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.76 E-value=1.3e+02 Score=19.67 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=32.4
Q ss_pred chhhHHHHHHHHHhHhcc-CcEEEEcCC-CCHHHHHHHHHhcCceEEEec
Q 028779 21 PLFHVFGLAVITCGQLQK-GSCIILMAK-FDLEMFLRAIEKHRVTHIWVV 68 (204)
Q Consensus 21 pl~h~~g~~~~~~~~l~~-G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~ 68 (204)
.-.|..|+.. +...|.. |-.+.+.+. .+++.+.+.+.+.++..+..+
T Consensus 10 ~~~~~lGl~~-la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS 58 (121)
T PF02310_consen 10 GEVHPLGLLY-LAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGIS 58 (121)
T ss_dssp TSSTSHHHHH-HHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEE
T ss_pred CcchhHHHHH-HHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEE
Confidence 3345666666 5555555 888877754 467999999999988876654
No 337
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=35.63 E-value=2.7e+02 Score=23.51 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=45.6
Q ss_pred EEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEec-hHHHHHHHhCCCCCC
Q 028779 15 VFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGLVKK 83 (204)
Q Consensus 15 ~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~-p~~~~~l~~~~~~~~ 83 (204)
+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ++++.+. ......|+++
T Consensus 127 vV~~i~p~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l~~~----- 201 (462)
T cd07112 127 VVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAEQSPLTALRLAELALEAGLPAGVLNVVPGFGHTAGEALGLH----- 201 (462)
T ss_pred eEEEECCCchHHHHHHHHHHHHHHcCCeeeeeCCCCCCHHHHHHHHHHHhcCCCCCcEEEEeCCCchHHHHHhcC-----
Confidence 7778888887665543 355799999999998652 3456677777643 3333331 2234444433
Q ss_pred CCCccceeeeecCC
Q 028779 84 FDLSSLKLVGSGAA 97 (204)
Q Consensus 84 ~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 202 ---~~v~~V~fTGs 212 (462)
T cd07112 202 ---MDVDALAFTGS 212 (462)
T ss_pred ---CCcCEEEEECC
Confidence 24556666663
No 338
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=35.60 E-value=1.4e+02 Score=20.46 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhHhccCcEEEEcCC-CCHHHHHHHHHhcCceEEEech
Q 028779 24 HVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 24 h~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p 69 (204)
|.-|-...-..--..|-.++-... ..++.+.+...++++..+.++.
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~ 58 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSS 58 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 555554422222345666666653 5899999999999998876544
No 339
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=35.48 E-value=2.7e+02 Score=23.42 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=53.3
Q ss_pred CcEEEEecchhhHHHH-HHHHHhHhccCcEEEEcCCC----CHHHHHHHHHhc---CceEEEec---hHHHHHHHhCCCC
Q 028779 13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKF----DLEMFLRAIEKH---RVTHIWVV---PPLILALAKHGLV 81 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~-~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~---~~t~~~~~---p~~~~~l~~~~~~ 81 (204)
--+++...|+++-... ...+..+|..|.++++.+.. ....+.+++.+. ....+..+ ......|++++
T Consensus 101 ~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~~~l~~~l~~ag~~P~g~~~~v~g~~~~~~~l~~~~-- 178 (442)
T cd07084 101 YGPVLVIGAFNFPLWIPLLQLAGALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGLLPPEDVTLINGDGKTMQALLLHP-- 178 (442)
T ss_pred ceeEEEEcCCccHhHHHHHHHHHHHHcCCeEEEECCCCchHHHHHHHHHHHHhCCCCccceEEeeCCcHHHHHHHcCC--
Confidence 3578888898775533 33467899999999998653 344567777764 22333332 23444555442
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHHhC
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~ 111 (204)
.++.+.+.| +.+..+.+.+..
T Consensus 179 ------~v~~V~fTG---s~~~g~~i~~~a 199 (442)
T cd07084 179 ------NPKMVLFTG---SSRVAEKLALDA 199 (442)
T ss_pred ------CCCEEEEEC---CHHHHHHHHHhc
Confidence 356677777 455555555554
No 340
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=35.34 E-value=2.8e+02 Score=23.60 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=50.9
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHh-cC---ceEEEech-HHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEK-HR---VTHIWVVP-PLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~-~~---~t~~~~~p-~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++ .. ++++.+.. ..-..|+++
T Consensus 136 P~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~~~l~~l~~~~lP~gvv~~v~g~~~~~~~~L~~~--- 212 (480)
T cd07559 136 PLGVVGQIIPWNFPLLMAAWKLAPALAAGNTVVLKPASQTPLSILVLMELIGDLLPKGVVNVVTGFGSEAGKPLASH--- 212 (480)
T ss_pred ccceEEEECCCchHHHHHHHHHHHHHHcCCEEEEECchhhhHHHHHHHHHHHHhCCcCeEEEEecCchHHHHHHhcC---
Confidence 3357888889888766544 356899999999998752 33455666655 22 23333322 234445443
Q ss_pred CCCCCccceeeeecCCCCCHHHHHHHHH
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAK 109 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~l~~~~~~~~~~ 109 (204)
+.++.+.++| +.+.-+.+.+
T Consensus 213 -----~~v~~V~fTG---s~~~g~~i~~ 232 (480)
T cd07559 213 -----PRIAKLAFTG---STTVGRLIMQ 232 (480)
T ss_pred -----CCCCEEEEEC---cHHHHHHHHH
Confidence 3466777777 4444444443
No 341
>PRK07638 acyl-CoA synthetase; Validated
Probab=35.31 E-value=1.7e+02 Score=24.44 Aligned_cols=56 Identities=9% Similarity=0.040 Sum_probs=43.9
Q ss_pred CCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC-CCCHHHHHHHHHhcCceEEEech
Q 028779 12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVP 69 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p 69 (204)
.+|++...++-.- .+...+++++..|++.+..+ ...+..+.+.+++.++..+....
T Consensus 49 ~~~~v~i~~~~~~--~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~ 105 (487)
T PRK07638 49 KNKTIAILLENRI--EFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTER 105 (487)
T ss_pred CCCEEEEEcCCCH--HHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEec
Confidence 5788877777654 34445788999999999875 46889999999999999887765
No 342
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=34.77 E-value=2.4e+02 Score=22.66 Aligned_cols=101 Identities=10% Similarity=-0.081 Sum_probs=61.1
Q ss_pred cccccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCC
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 83 (204)
..+.++..+|-+..-..-+-+.-.... ++-.+.=.++-++ ++.+-+.+.+.+.+++.|.++.-..+...=.+. ..
T Consensus 153 ~dfv~L~~GD~vIQNganS~VG~~ViQ-laka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k---~~ 228 (354)
T KOG0025|consen 153 KDFVQLNKGDSVIQNGANSGVGQAVIQ-LAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKK---FK 228 (354)
T ss_pred HHHHhcCCCCeeeecCcccHHHHHHHH-HHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhh---hh
Confidence 345678888977766666655555553 3333333444444 778999999999999999987655444322221 11
Q ss_pred CCCccceeeee-cCCCCCHHHHHHHHH
Q 028779 84 FDLSSLKLVGS-GAAPLGKELMEECAK 109 (204)
Q Consensus 84 ~~l~~lr~~~~-~G~~l~~~~~~~~~~ 109 (204)
.+++..|..+. .|...+.++.+.+.+
T Consensus 229 ~~~~~prLalNcVGGksa~~iar~L~~ 255 (354)
T KOG0025|consen 229 GDNPRPRLALNCVGGKSATEIARYLER 255 (354)
T ss_pred ccCCCceEEEeccCchhHHHHHHHHhc
Confidence 24556666554 355555666666544
No 343
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=34.62 E-value=2.9e+02 Score=23.52 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=49.8
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC-C---HHHHHHHHHh------cCceEEEec----hHHHHHHH
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF-D---LEMFLRAIEK------HRVTHIWVV----PPLILALA 76 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~-~---~~~~~~~i~~------~~~t~~~~~----p~~~~~l~ 76 (204)
|--+++...|+++-..... .+..+|..|.++++-+.. . ...+.+++++ .....+..+ ...-..|+
T Consensus 129 P~GVV~~I~PwN~P~~~~~~~ia~ALaaGN~VVlKps~~tp~t~~~l~~ll~~~l~eaGlP~gvv~vv~g~~~~~~~~L~ 208 (465)
T PRK15398 129 PFGVIGAVTPSTNPTETIINNAISMLAAGNSVVFSPHPGAKKVSLRAIELLNEAIVAAGGPENLVVTVAEPTIETAQRLM 208 (465)
T ss_pred ccEEEEEeeCCCCchHHHHHHHHHHHHhCCcEEEECCccchHHHHHHHHHHHHHHHHcCCCCCeEEEecCCCHHHHHHHH
Confidence 4456777777765443333 355799999999998753 2 3345555553 123333333 23445555
Q ss_pred hCCCCCCCCCccceeeeecCCCCCHHHHHHHHH
Q 028779 77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109 (204)
Q Consensus 77 ~~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~ 109 (204)
+++ .++.+.+.| +.++-+.+.+
T Consensus 209 ~~~--------~vd~I~fTG---S~~~G~~v~~ 230 (465)
T PRK15398 209 KHP--------GIALLVVTG---GPAVVKAAMK 230 (465)
T ss_pred cCC--------CccEEEeeC---CHHHHHHHHH
Confidence 542 366777777 4455555555
No 344
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=34.62 E-value=2.8e+02 Score=23.28 Aligned_cols=75 Identities=16% Similarity=0.044 Sum_probs=45.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..... .+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ ..-..|+++
T Consensus 121 GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~t~~~l~~~~~~ag~P~g~v~~v~g~~~~~~~~l~~~---- 196 (451)
T cd07150 121 GVVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFNVVTGGGAEVGDELVDD---- 196 (451)
T ss_pred cEEEEECCCccHHHHHHHHHHHHHhcCCeEEEECCccCcHHHHHHHHHHHHhCCCcCcEEEeeCCCcHHHHHHhcC----
Confidence 37778888887654433 367899999999998642 3456677777643 33333332 234445443
Q ss_pred CCCCccceeeeecC
Q 028779 83 KFDLSSLKLVGSGA 96 (204)
Q Consensus 83 ~~~l~~lr~~~~~G 96 (204)
+.++.+.++|
T Consensus 197 ----~~v~~V~ftG 206 (451)
T cd07150 197 ----PRVRMVTFTG 206 (451)
T ss_pred ----CCCCEEEEEC
Confidence 2455666666
No 345
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=33.26 E-value=3e+02 Score=23.37 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=46.9
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----H-HHHHHHhCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----P-LILALAKHGLV 81 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~-~~~~l~~~~~~ 81 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ...+..++ . .-..|..+
T Consensus 141 Gvv~~I~p~N~Pl~~~~~~~~~ALaaGN~vvlKPs~~tp~t~~~l~~l~~~aglP~g~~~~v~g~~~~~~~~~l~~~--- 217 (481)
T TIGR03216 141 GVVGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEETPGTATLLGEVMNAVGVPKGVYNVVHGFGPDSAGEFLTRH--- 217 (481)
T ss_pred ceEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHHcCCCcCceEEEecCChhHHHHHHhcC---
Confidence 47777788887765544 255789999999998642 4566777877753 23333332 1 22333332
Q ss_pred CCCCCccceeeeecCCC
Q 028779 82 KKFDLSSLKLVGSGAAP 98 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.+.|.+
T Consensus 218 -----~~vd~v~fTGS~ 229 (481)
T TIGR03216 218 -----PGVDAITFTGET 229 (481)
T ss_pred -----CCCCEEEEECCH
Confidence 346677777744
No 346
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=33.24 E-value=2.9e+02 Score=23.13 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=45.9
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC-CH----HHHHHHHHhc--CceEEEech---HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF-DL----EMFLRAIEKH--RVTHIWVVP---PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~-~~----~~~~~~i~~~--~~t~~~~~p---~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..... .+..+|..|.++++-+.. .| ..+.+++.+. ....+..++ ..-..|+++
T Consensus 112 Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~~l~~~~~~ag~P~gvv~~v~g~~~~~~~l~~~---- 187 (443)
T cd07152 112 GVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVLHVLPGGADAGEALVED---- 187 (443)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHHHcCCEEEEECCcccchhHHHHHHHHHHHhCcCcCcEEEecCChHHHHHHhcC----
Confidence 37777788887655444 367899999999998652 22 3455777764 333444433 333344433
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 188 ----~~v~~V~fTGs 198 (443)
T cd07152 188 ----PNVAMISFTGS 198 (443)
T ss_pred ----CCCCEEEEECC
Confidence 24666766663
No 347
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=33.05 E-value=2.9e+02 Score=23.11 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=45.5
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..... .+..+|..|.++++.+.. ....+.+++++.+ ...+..++ .....|+++
T Consensus 119 Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~~~l~~~l~~aglP~g~v~~v~~~~~~~~~~l~~~---- 194 (451)
T cd07103 119 GVVAAITPWNFPAAMITRKIAPALAAGCTVVLKPAEETPLSALALAELAEEAGLPAGVLNVVTGSPAEIGEALCAS---- 194 (451)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccCcHHHHHHHHHHHHcCCCcccEEEEecCchhHHHHHhcC----
Confidence 46777778777654422 467899999999998642 3456677777642 33333332 233444433
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 195 ----~~vd~V~ftGs 205 (451)
T cd07103 195 ----PRVRKISFTGS 205 (451)
T ss_pred ----CCCCEEEEECC
Confidence 24666667663
No 348
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=32.39 E-value=3e+02 Score=23.08 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=45.5
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEec-hHHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~-p~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..... .+..+|..|.++++.+.. ....+.+++++.+ ++++.+. ......|+++
T Consensus 119 GVv~~i~p~N~P~~~~~~~~~~AL~aGN~VIlkps~~~p~~~~~l~~~l~~aglP~g~v~~v~g~~~~~~~~L~~~---- 194 (455)
T cd07093 119 GVAGLITPWNLPLMLLTWKIAPALAFGNTVVLKPSEWTPLTAWLLAELANEAGLPPGVVNVVHGFGPEAGAALVAH---- 194 (455)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHhcCCEEEeECCCcCcHHHHHHHHHHHhcCCCccceEEEecCchHHHHHHhcC----
Confidence 36777778777654322 366899999999998642 3456777777743 3333332 2334445443
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 195 ----~~i~~V~ftGs 205 (455)
T cd07093 195 ----PDVDLISFTGE 205 (455)
T ss_pred ----CCccEEEEECC
Confidence 24566666663
No 349
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=32.39 E-value=3.1e+02 Score=23.26 Aligned_cols=47 Identities=6% Similarity=-0.050 Sum_probs=33.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhc
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKH 60 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~ 60 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.
T Consensus 135 GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~l~~~~~~a 186 (478)
T cd07086 135 GVVGVITAFNFPVAVPGWNAAIALVCGNTVVWKPSETTPLTAIAVTKILAEV 186 (478)
T ss_pred eeEEEECCCCcHHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHHHHHHHHh
Confidence 47888888887554433 467899999999998642 344566777664
No 350
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=31.79 E-value=2.4e+02 Score=21.66 Aligned_cols=88 Identities=11% Similarity=0.151 Sum_probs=57.0
Q ss_pred hHhccCcEEEEcCCCCHHHHHHHHHhc-CceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCC-------CCHHHHH
Q 028779 34 GQLQKGSCIILMAKFDLEMFLRAIEKH-RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP-------LGKELME 105 (204)
Q Consensus 34 ~~l~~G~~~~~~~~~~~~~~~~~i~~~-~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~-------l~~~~~~ 105 (204)
.-+..|.++++-.+-+...+++.|.+. ++|++--.......|.+. ++++.++.||.- .-+...+
T Consensus 88 ~lI~~g~tIflD~GtT~~~la~~L~~~~~ltvvTnsl~i~~~l~~~--------~~~~villGG~~~~~~~~~~G~~~~~ 159 (252)
T PRK10681 88 TLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEK--------PHCRAILCGGEFHASNAIFKPLDFQQ 159 (252)
T ss_pred hhcCCCCEEEEECCccHHHHHHhcCCCCCeEEEECCHHHHHHHhhC--------CCCEEEEECcEEecCcceeeCHHHHH
Confidence 345566777777777788888888764 577766666666666543 356788888863 2234556
Q ss_pred HHHHhCCCCcEEcccccccccccc
Q 028779 106 ECAKNVPSATVIQGYGLTETSGIA 129 (204)
Q Consensus 106 ~~~~~~~~~~~~~~yG~tE~~~~~ 129 (204)
.+.+......++..-|.++..++.
T Consensus 160 ~l~~~~~D~afig~~gi~~~~G~~ 183 (252)
T PRK10681 160 TLDNICPDIAFYSAAGVHVSKGAT 183 (252)
T ss_pred HHHhhCCCEEEEeCceecCCCCcC
Confidence 666665677777777776544443
No 351
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=31.78 E-value=60 Score=23.27 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=18.9
Q ss_pred cceeeeecCCC-CCHHHHHHHHHhCCCCcEE
Q 028779 88 SLKLVGSGAAP-LGKELMEECAKNVPSATVI 117 (204)
Q Consensus 88 ~lr~~~~~G~~-l~~~~~~~~~~~~~~~~~~ 117 (204)
..|.+++|+.+ .-....+++++.+|+..+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEE
Confidence 46677777744 3334455677778887765
No 352
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=31.73 E-value=1.4e+02 Score=22.86 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=50.8
Q ss_pred HhccCcEEEEcCCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCCCC------HHHHHHHH
Q 028779 35 QLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLG------KELMEECA 108 (204)
Q Consensus 35 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~------~~~~~~~~ 108 (204)
-+--|.++++-.+-....+++.|.+.++|++--.......|.+. ++++.++.||+--+ ....+.++
T Consensus 90 ~I~~g~~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~--------~~~~v~l~GG~~~~~~~~~~G~~~~~l~ 161 (251)
T PRK13509 90 LCNPGESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQ--------EHDSVIIMGGQYNKSQSITLSPQGSENS 161 (251)
T ss_pred hCCCCCEEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhC--------CCCEEEEECCeEcCCcceeECHHHHHHH
Confidence 34456666666665667788888666777776666667667653 24567778875311 22345555
Q ss_pred HhCCCCcEEcccccccc
Q 028779 109 KNVPSATVIQGYGLTET 125 (204)
Q Consensus 109 ~~~~~~~~~~~yG~tE~ 125 (204)
+......+...-|.++.
T Consensus 162 ~~~~d~aFig~~gi~~~ 178 (251)
T PRK13509 162 LYAGHWMFTSGKGLTAD 178 (251)
T ss_pred hCcCCEEEECCCcCCCC
Confidence 44446667777776654
No 353
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=31.63 E-value=3.3e+02 Score=23.31 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=45.7
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEec-hHHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVV-PPLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~-p~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++.+.+ ++.+.+. ......|+++
T Consensus 159 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~L~~~---- 234 (494)
T PRK09847 159 GVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRH---- 234 (494)
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHcCcCcCcEEEEeCCChhHHHHHhcC----
Confidence 47888888887665443 345689999999998642 3445667777642 3333332 2334445443
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 235 ----~~vd~v~fTGs 245 (494)
T PRK09847 235 ----NDIDAIAFTGS 245 (494)
T ss_pred ----CCCCEEEEECC
Confidence 24556666663
No 354
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=31.43 E-value=2.4e+02 Score=21.66 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=56.8
Q ss_pred HhccCcEEEEcCCCCHHHHHHHHHh-cCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCC-------CCHHHHHH
Q 028779 35 QLQKGSCIILMAKFDLEMFLRAIEK-HRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP-------LGKELMEE 106 (204)
Q Consensus 35 ~l~~G~~~~~~~~~~~~~~~~~i~~-~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~-------l~~~~~~~ 106 (204)
-+--|.++++-.+-....+++.|.. .++|++--.......|... ++++.++.||+- +-+...+.
T Consensus 88 ~I~~g~tIflD~GtT~~~la~~L~~~~~ltVvTNsl~ia~~l~~~--------~~~~villGG~~~~~~~~~~G~~a~~~ 159 (252)
T PRK10906 88 QIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAK--------EDFRIILAGGELRSRDGGIIGEATLDF 159 (252)
T ss_pred hCCCCCEEEEcCcHHHHHHHHHhcCCCCcEEEECcHHHHHHHhhC--------CCCEEEEECCEEecCCCccCCHHHHHH
Confidence 3445666666566667778888865 4677776666667767543 356778888863 33556667
Q ss_pred HHHhCCCCcEEccccccccccccc
Q 028779 107 CAKNVPSATVIQGYGLTETSGIAT 130 (204)
Q Consensus 107 ~~~~~~~~~~~~~yG~tE~~~~~~ 130 (204)
+++......++..-|.++.++...
T Consensus 160 l~~~~~d~afi~~~Gi~~~~G~t~ 183 (252)
T PRK10906 160 ISQFRLDFGILGISGIDSDGSLLE 183 (252)
T ss_pred HHhccCCEEEEcCCEECCCCCcCC
Confidence 766655777777777775544433
No 355
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=31.39 E-value=3.7e+02 Score=23.81 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=63.1
Q ss_pred ccCCCCcE-EEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCC
Q 028779 8 TAGELDYV-FLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD 85 (204)
Q Consensus 8 ~~~~~~d~-~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~ 85 (204)
+++++++. +....+..|- ++....+++..+-+++-. +..--+.+...|.+.+++.++..+.++..|..- ...
T Consensus 109 lG~k~~e~k~~iFa~Trae--Wm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~----l~~ 182 (678)
T KOG1180|consen 109 LGLKPKETKIAIFAETRAE--WMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAP----LKQ 182 (678)
T ss_pred hCCCCCCCeEEEEecchHH--HHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHH----Hhc
Confidence 55665554 4444444432 333355778888888876 445678889999999999999999999976543 233
Q ss_pred CccceeeeecCC---CCCHHHHHHH
Q 028779 86 LSSLKLVGSGAA---PLGKELMEEC 107 (204)
Q Consensus 86 l~~lr~~~~~G~---~l~~~~~~~~ 107 (204)
.+++|.++..-. ....+....+
T Consensus 183 ~~~vk~II~~d~id~~~~~~~v~~i 207 (678)
T KOG1180|consen 183 AKTVKHIIYFDPIDYDAAKDDVNSI 207 (678)
T ss_pred cCceeEEEEecCCCCccchhhhhhh
Confidence 568888887663 4455555554
No 356
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=31.34 E-value=2.6e+02 Score=23.33 Aligned_cols=88 Identities=23% Similarity=0.372 Sum_probs=55.4
Q ss_pred CcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CC---CCHHHHHHHHHh---------cCceEEEechHHHHHHHhCC
Q 028779 13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AK---FDLEMFLRAIEK---------HRVTHIWVVPPLILALAKHG 79 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~---~~~~~~~~~i~~---------~~~t~~~~~p~~~~~l~~~~ 79 (204)
+.++-+-.|++.+.|- ++++|++|..+++- +. ++...+.+.++. .-+.++.+.|..-..|..+
T Consensus 193 ~aiVsWNYPfHN~lgP---iiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd~a~~ltSh- 268 (583)
T KOG2454|consen 193 GAIVSWNYPFHNILGP---IIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPDTAEALTSH- 268 (583)
T ss_pred EEeeecCCchhhhhhH---HHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecCcchHhHhhcC-
Confidence 3456667788877776 45899999998886 32 455556665553 1244555566555555443
Q ss_pred CCCCCCCccceee-eecCCCCCHHHHHHHHHhC
Q 028779 80 LVKKFDLSSLKLV-GSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 80 ~~~~~~l~~lr~~-~~~G~~l~~~~~~~~~~~~ 111 (204)
+.+|.+ ++|..|+..-+++...+.+
T Consensus 269 -------~g~khitFiGSqpvak~i~~~AAk~L 294 (583)
T KOG2454|consen 269 -------SGVKHITFIGSQPVAKMIMRNAAKTL 294 (583)
T ss_pred -------CCcceEEEecCcHHHHHHHHhhhhhc
Confidence 245544 5566677777777777775
No 357
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=31.13 E-value=31 Score=24.16 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=32.6
Q ss_pred CccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccc
Q 028779 86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET 125 (204)
Q Consensus 86 l~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~ 125 (204)
++....++++|..+-....+.+.+..+..+..-.||+|=.
T Consensus 60 l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~ 99 (147)
T PF04016_consen 60 LPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSAP 99 (147)
T ss_dssp GGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCGG
T ss_pred HccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCch
Confidence 4567789999999988999999998876788899999853
No 358
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=31.07 E-value=3.3e+02 Score=23.14 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=44.8
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHh-cCceEEEech----HHHHHHHhCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEK-HRVTHIWVVP----PLILALAKHGLVKK 83 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~-~~~t~~~~~p----~~~~~l~~~~~~~~ 83 (204)
-+++...|+++-..+.. .+..+|..|.++++-|.. ....+.+++.+ .....+..++ ..-..|+.+
T Consensus 139 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~~~l~~l~~~~lP~gv~~~v~g~~~~~~~~L~~~----- 213 (472)
T TIGR03374 139 GVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVVNILFGRGKTVGDPLTGH----- 213 (472)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHhcCCEEEecCCCCCCHHHHHHHHHHHHhCCcCeEEEEecCchhHHHHHhcC-----
Confidence 37888888887765554 345789999999998642 34455565554 2323333332 234445443
Q ss_pred CCCccceeeeecC
Q 028779 84 FDLSSLKLVGSGA 96 (204)
Q Consensus 84 ~~l~~lr~~~~~G 96 (204)
+.++.+.+.|
T Consensus 214 ---~~v~~V~fTG 223 (472)
T TIGR03374 214 ---EKVRMVSLTG 223 (472)
T ss_pred ---CCcCEEEEEC
Confidence 2466677777
No 359
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=30.71 E-value=2.6e+02 Score=21.70 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=54.0
Q ss_pred CCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccc
Q 028779 11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL 89 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l 89 (204)
...|+++.+.+..+.......+...+..+..++-. ...+++.+.+.+. ....++..+|+.-..... ++
T Consensus 64 ~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~-~~~~v~r~mPn~~~~~~~----------~~ 132 (279)
T PRK07679 64 TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQ-KDVPIIRAMPNTSAAILK----------SA 132 (279)
T ss_pred hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC-CCCeEEEECCCHHHHHhc----------cc
Confidence 45688888888888777666444334445555544 6677777777653 334567777764433321 22
Q ss_pred eeeeecCCCCCHHHHHHHHHhC
Q 028779 90 KLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 90 r~~~~~G~~l~~~~~~~~~~~~ 111 (204)
.++++|+..+.+..+.+++.|
T Consensus 133 -t~~~~~~~~~~~~~~~v~~l~ 153 (279)
T PRK07679 133 -TAISPSKHATAEHIQTAKALF 153 (279)
T ss_pred -EEEeeCCCCCHHHHHHHHHHH
Confidence 356678888766655555554
No 360
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=30.55 E-value=3.3e+02 Score=22.86 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=31.7
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHh
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEK 59 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~ 59 (204)
--+++...|+++-..... .+..+|..|.++++-+.. ....+.+++++
T Consensus 115 ~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~~~l~~~~~~ 166 (446)
T cd07106 115 LGVVAAIVPWNFPLLLAAWKIAPALLAGNTVVLKPSPFTPLCTLKLGELAQE 166 (446)
T ss_pred ceEEEEEcCCChHHHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHHHHH
Confidence 347778888777655433 357899999999998642 34455666655
No 361
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=30.48 E-value=3.3e+02 Score=22.89 Aligned_cols=76 Identities=12% Similarity=0.063 Sum_probs=45.6
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC-----ceEEEech-HHHHHHHhCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR-----VTHIWVVP-PLILALAKHGLVK 82 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~-----~t~~~~~p-~~~~~l~~~~~~~ 82 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+.+++.+ ++++.+.. .....|+++
T Consensus 119 Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~l~~~~~~aGlP~~~~~~v~g~~~~~~~~l~~~---- 194 (453)
T cd07115 119 GVVGAIVPWNFPLMFAAWKVAPALAAGNTVVLKPAELTPLSALRIAELMAEAGFPAGVLNVVTGFGEVAGAALVEH---- 194 (453)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHhcCcCchheEEEecCchhHHHHHhcC----
Confidence 47777778887655433 356889999999998642 3456677777743 23333211 233445443
Q ss_pred CCCCccceeeeecCC
Q 028779 83 KFDLSSLKLVGSGAA 97 (204)
Q Consensus 83 ~~~l~~lr~~~~~G~ 97 (204)
+.++.+.++|.
T Consensus 195 ----~~id~v~fTGs 205 (453)
T cd07115 195 ----PDVDKITFTGS 205 (453)
T ss_pred ----CCCCEEEEECc
Confidence 24666777773
No 362
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=29.91 E-value=20 Score=21.30 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhCCCCcEEccccccc
Q 028779 99 LGKELMEECAKNVPSATVIQGYGLTE 124 (204)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~yG~tE 124 (204)
+..++.+++.+.||.+.+...+|++-
T Consensus 9 L~~EL~kRl~~~yPd~~v~Vr~~s~~ 34 (65)
T PF06183_consen 9 LESELTKRLHRQYPDAEVRVRPGSAN 34 (65)
T ss_dssp HHHHHHHHHHHH-SS-EEEEEEESS-
T ss_pred HHHHHHHHHHHHCCCceEeeeecccC
Confidence 45678889999999988888887653
No 363
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=29.89 E-value=3.6e+02 Score=23.18 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=47.2
Q ss_pred CCCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHhcC--ceEEEech----HHHHHHHhCC
Q 028779 11 ELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEKHR--VTHIWVVP----PLILALAKHG 79 (204)
Q Consensus 11 ~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~--~t~~~~~p----~~~~~l~~~~ 79 (204)
.+--+++...|+++-..+.. .+..+|..|.++++.+.. ....+.+++.+.+ ...+..++ .....|+.++
T Consensus 159 ~P~GVV~~I~pwN~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~l~~~~ 238 (500)
T TIGR01238 159 ESRGVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQEAGFPAGTIQLLPGRGADVGAALTSDP 238 (500)
T ss_pred cCcceEEEECCCchHHHHHHHHHHHHHHcCCEEEEeCCCCccHHHHHHHHHHHHcCCCCCceEEEecCcchHHHHHhcCC
Confidence 44567888888888654433 466899999999998652 2445566666643 33333332 3444555432
Q ss_pred CCCCCCCccceeeeecC
Q 028779 80 LVKKFDLSSLKLVGSGA 96 (204)
Q Consensus 80 ~~~~~~l~~lr~~~~~G 96 (204)
.++.+.+.|
T Consensus 239 --------~v~~V~ftG 247 (500)
T TIGR01238 239 --------RIAGVAFTG 247 (500)
T ss_pred --------CcCeEEEEC
Confidence 355566666
No 364
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=29.48 E-value=95 Score=25.15 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=35.6
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC------CCCHHHHHHHHHhcC----ceEEEechHHHHHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA------KFDLEMFLRAIEKHR----VTHIWVVPPLILAL 75 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~------~~~~~~~~~~i~~~~----~t~~~~~p~~~~~l 75 (204)
.++++++|.++.+. +.+... .-+.+..|+..++++ ..|++.+.+.+.+.. ++++++.|.-+..+
T Consensus 59 ~l~~~~gdeVi~p~-~t~~~~----~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~~G~~~d~~~i 132 (363)
T PF01041_consen 59 ALGLGPGDEVIVPA-YTFPAT----ASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHLFGNPADMDAI 132 (363)
T ss_dssp HTTGGTTSEEEEES-SS-THH----HHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-GGGB---HHHH
T ss_pred hcCCCcCceEecCC-CcchHH----HHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecCCCCcccHHHH
Confidence 47778888887663 333222 335577899999985 147888888877544 44455555544444
No 365
>PRK06234 methionine gamma-lyase; Provisional
Probab=27.75 E-value=2.2e+02 Score=23.57 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=7.6
Q ss_pred CCCCCHHHHHHHHHh
Q 028779 96 AAPLGKELMEECAKN 110 (204)
Q Consensus 96 G~~l~~~~~~~~~~~ 110 (204)
|...+.+.+.++.+.
T Consensus 163 G~v~dl~~I~~la~~ 177 (400)
T PRK06234 163 LKVTDIKAISNIAHE 177 (400)
T ss_pred CCcCCHHHHHHHHHh
Confidence 455555445555444
No 366
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=27.70 E-value=3.9e+02 Score=22.90 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=49.5
Q ss_pred cEEEEecchhhHHHHHHH-HHhHhccCcEEEEcCCC----CHHH----HHHHHHhc--CceEEEech----HHHHHHHhC
Q 028779 14 YVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKF----DLEM----FLRAIEKH--RVTHIWVVP----PLILALAKH 78 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~~-~~~~l~~G~~~~~~~~~----~~~~----~~~~i~~~--~~t~~~~~p----~~~~~l~~~ 78 (204)
-++....|+++-...... ...+|..|.++++-+.. +... +.+++++. ....+..++ .....|+++
T Consensus 106 GVV~~I~P~n~P~~~~~~k~~~AL~aGNaVIlKps~~a~~s~~~~~~~l~~~l~eaGlP~gvv~~v~g~~~e~~~~L~~~ 185 (488)
T TIGR02518 106 GVVAGLIPSTNPTSTAIYKTLISIKARNAIVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAIGCITVPTIEGTNELMKN 185 (488)
T ss_pred eEEEEEcccCChHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHHHHHHHHHHcCcCcccEEEEcCCCHHHHHHHHhC
Confidence 466777888776655553 66799999999998753 2233 33334553 334444443 345666654
Q ss_pred CCCCCCCCccceeeeecCCCCCHHHHHHHHHh
Q 028779 79 GLVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110 (204)
Q Consensus 79 ~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~ 110 (204)
+ .++.+++.|. ..+.+...+.
T Consensus 186 ~--------~vd~V~fTGs---~~v~~~a~~~ 206 (488)
T TIGR02518 186 K--------DTSLILATGG---EAMVKAAYSS 206 (488)
T ss_pred C--------CcCEEEEeCC---HHHHHHHHHc
Confidence 3 3556666663 3355555433
No 367
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=27.54 E-value=2.8e+02 Score=24.78 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=49.4
Q ss_pred cccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEc-CCCCHHHHHHHHHhcCceEEEechHH
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPL 71 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~ 71 (204)
..+++.+|++...+|+.--.-+ ..+++...|+..... ..+.++.++.-++..++..++..-..
T Consensus 115 ~~g~~kGD~V~~~mPm~~e~~i--a~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~ 178 (626)
T KOG1175|consen 115 KCGLKKGDTVAIYMPMIPEAVI--AMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVV 178 (626)
T ss_pred hcCCCCCcEEEEeccCChHHHH--HHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeee
Confidence 5789999999999999865433 356677778777666 57899999999999998887765443
No 368
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=27.07 E-value=4.1e+02 Score=23.01 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=44.8
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC-C---HHHHHHHHHhc---CceEEEechHHHHHHHhCCCCCCC
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF-D---LEMFLRAIEKH---RVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~-~---~~~~~~~i~~~---~~t~~~~~p~~~~~l~~~~~~~~~ 84 (204)
.-+++...|+++-..+.. .+..+|..|.++++-+.. . ...+.+.+.+- ....+..++.--..+.+.
T Consensus 149 ~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~~~l~~~~~~ag~lP~gv~~~v~g~~~~~~~~------ 222 (521)
T PRK11903 149 RGVALFINAFNFPAWGLWEKAAPALLAGVPVIVKPATATAWLTQRMVKDVVAAGILPAGALSVVCGSSAGLLDH------ 222 (521)
T ss_pred cceEEEECCcchHHHHHHHHHHHHHHcCCeEEEEcCCcChHHHHHHHHHHHHhCCCCcCceEEeeCCchHHHhc------
Confidence 467777788887664333 355899999999998642 3 34455655543 333343333211112221
Q ss_pred CCccceeeeecCCC
Q 028779 85 DLSSLKLVGSGAAP 98 (204)
Q Consensus 85 ~l~~lr~~~~~G~~ 98 (204)
++.++.+.+.|..
T Consensus 223 -l~~v~~v~fTGS~ 235 (521)
T PRK11903 223 -LQPFDVVSFTGSA 235 (521)
T ss_pred -ccCCCEEEEECCH
Confidence 1456777777743
No 369
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=27.02 E-value=3e+02 Score=21.37 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=55.1
Q ss_pred hccCcEEEEcCCCCHHHHHHHHHhc-CceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCCCC-------HHHHHHH
Q 028779 36 LQKGSCIILMAKFDLEMFLRAIEKH-RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLG-------KELMEEC 107 (204)
Q Consensus 36 l~~G~~~~~~~~~~~~~~~~~i~~~-~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~-------~~~~~~~ 107 (204)
+--|.++++-.+-....+++.|... ++|++--.......|.+. ++++.++.||.--+ +...+.+
T Consensus 104 I~dgd~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~--------~~~~v~llGG~~~~~~~~~~G~~a~~~l 175 (269)
T PRK09802 104 IQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEA--------EGVELLMTGGHLRRQSQSFYGDQAEQSL 175 (269)
T ss_pred CCCCCEEEECCchHHHHHHHhcCcCCCeEEEeCCHHHHHHHHhC--------CCCEEEEECCEEecCCCceECHHHHHHH
Confidence 3346666665666677788888654 477776666666666543 35677888886432 3456666
Q ss_pred HHhCCCCcEEccccccccccccc
Q 028779 108 AKNVPSATVIQGYGLTETSGIAT 130 (204)
Q Consensus 108 ~~~~~~~~~~~~yG~tE~~~~~~ 130 (204)
.+.....-++..-|.++..++..
T Consensus 176 ~~~~~d~afig~~gi~~~~G~t~ 198 (269)
T PRK09802 176 QNYHFDMLFLGVDAIDLERGVST 198 (269)
T ss_pred HhccCCEEEEcCceecCCCCcCC
Confidence 66656777888888776555443
No 370
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.84 E-value=2.2e+02 Score=19.44 Aligned_cols=83 Identities=16% Similarity=-0.041 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhHhccCc-EEEEcCC-CCHHHHHHHHHhcCceEEEechHH------HHHHHhCCCCCCCCCccceeeee
Q 028779 23 FHVFGLAVITCGQLQKGS-CIILMAK-FDLEMFLRAIEKHRVTHIWVVPPL------ILALAKHGLVKKFDLSSLKLVGS 94 (204)
Q Consensus 23 ~h~~g~~~~~~~~l~~G~-~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~------~~~l~~~~~~~~~~l~~lr~~~~ 94 (204)
.|..+-.. +-..|..++ .++-... .+++.+.+...++++.++.++... +..+++....+. +..++ ++.
T Consensus 14 ~Hd~g~~i-v~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g--~~~i~-viv 89 (132)
T TIGR00640 14 GHDRGAKV-IATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG--RPDIL-VVV 89 (132)
T ss_pred ccHHHHHH-HHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcC--CCCCE-EEE
Confidence 45555555 333444444 4444443 479999999999999887665433 222222211111 22333 555
Q ss_pred cCCCCCHHHHHHHHHh
Q 028779 95 GAAPLGKELMEECAKN 110 (204)
Q Consensus 95 ~G~~l~~~~~~~~~~~ 110 (204)
||.. +++..+.+++.
T Consensus 90 GG~~-~~~~~~~l~~~ 104 (132)
T TIGR00640 90 GGVI-PPQDFDELKEM 104 (132)
T ss_pred eCCC-ChHhHHHHHHC
Confidence 5544 56666666654
No 371
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=25.76 E-value=3.9e+02 Score=22.19 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=45.2
Q ss_pred CcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC-CHH----HHHHHHHhcC--ceEEEechH----HHHHHHhCCC
Q 028779 13 DYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF-DLE----MFLRAIEKHR--VTHIWVVPP----LILALAKHGL 80 (204)
Q Consensus 13 ~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~-~~~----~~~~~i~~~~--~t~~~~~p~----~~~~l~~~~~ 80 (204)
--+++...|+++-..... .+..+|..|.++++.+.. .|. .+.+++.+.+ ...+..++. .-..|++++
T Consensus 99 ~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~~- 177 (431)
T cd07104 99 LGVVGVISPFNFPLILAMRSVAPALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLNVVPGGGSEIGDALVEHP- 177 (431)
T ss_pred eeeEEEECCCCcHHHHHHHHHHHHHHcCCeEEeeCCCCChHHHHHHHHHHHHHcCCCcccEEEeeCCchhHHHHHhcCC-
Confidence 347788888877654433 467899999999998753 232 3566777642 333333332 334454432
Q ss_pred CCCCCCccceeeeecC
Q 028779 81 VKKFDLSSLKLVGSGA 96 (204)
Q Consensus 81 ~~~~~l~~lr~~~~~G 96 (204)
.++.+.++|
T Consensus 178 -------~i~~V~ftG 186 (431)
T cd07104 178 -------RVRMISFTG 186 (431)
T ss_pred -------CCCEEEEEC
Confidence 455666666
No 372
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=25.59 E-value=1.2e+02 Score=22.68 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=28.9
Q ss_pred ccCCCCcEEEEecchhhHHHHHHHHHhHhccCcEEEEcC
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA 46 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~ 46 (204)
.+++++|++...+|-... +...+++++..|+.++...
T Consensus 48 ~Gv~~GdrV~i~~~n~~~--~~~~~~a~~~~G~v~vp~n 84 (227)
T TIGR03089 48 LDAEPGSRVALDLPAHWQ--TAVWLLAAWSTGVEVVLAG 84 (227)
T ss_pred hCCCCCCEEEEECCCCHH--HHHHHHHHHHcCCEEEeCC
Confidence 588999999999987644 3334678899999988764
No 373
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=24.95 E-value=42 Score=21.00 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHhCCCCc--EEccccccc
Q 028779 98 PLGKELMEECAKNVPSAT--VIQGYGLTE 124 (204)
Q Consensus 98 ~l~~~~~~~~~~~~~~~~--~~~~yG~tE 124 (204)
.+..++.+++.+.||.+. +...||++-
T Consensus 20 AL~~EL~kRl~~~fPd~~~~v~Vr~~s~n 48 (81)
T PRK10597 20 ALAGELSRRIQYAFPDNEGHVSVRYAAAN 48 (81)
T ss_pred HHHHHHHHHHHhhCCCCCccEEEeecCCC
Confidence 466788889999999887 888888773
No 374
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=24.34 E-value=1.3e+02 Score=21.15 Aligned_cols=10 Identities=50% Similarity=0.594 Sum_probs=8.4
Q ss_pred eeeecCCCCC
Q 028779 91 LVGSGAAPLG 100 (204)
Q Consensus 91 ~~~~~G~~l~ 100 (204)
..++||||+-
T Consensus 69 vt~sGGEPl~ 78 (154)
T PRK11121 69 LSLSGGDPLH 78 (154)
T ss_pred EEEECCCccc
Confidence 5789999985
No 375
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=24.26 E-value=4.4e+02 Score=22.25 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=44.0
Q ss_pred cEEEEecchhhHHHHH-HHHHhHhccCcEEEEcCC-CC---HHHHHHHH----Hh--cCceEEE---echHHHHHHHhCC
Q 028779 14 YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAK-FD---LEMFLRAI----EK--HRVTHIW---VVPPLILALAKHG 79 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~-~~~~~~l~~G~~~~~~~~-~~---~~~~~~~i----~~--~~~t~~~---~~p~~~~~l~~~~ 79 (204)
-+++...|+++-.... ..+..+|..|.++++.+. .. ...+.+.+ .+ .....+. +.......|+++
T Consensus 122 GVv~~I~p~n~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~~~~~~~~~~~l~~aGlP~gvv~~v~g~~~~~~~L~~~- 200 (465)
T cd07098 122 GVVGAIVSWNYPFHNLLGPIIAALFAGNAIVVKVSEQVAWSSGFFLSIIRECLAACGHDPDLVQLVTCLPETAEALTSH- 200 (465)
T ss_pred eeEEEEcccCcHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHhcC-
Confidence 4788888877764433 246689999999999864 23 23333333 33 2333333 333345555544
Q ss_pred CCCCCCCccceeeeecCCC
Q 028779 80 LVKKFDLSSLKLVGSGAAP 98 (204)
Q Consensus 80 ~~~~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.+.|..
T Consensus 201 -------~~v~~V~ftGs~ 212 (465)
T cd07098 201 -------PVIDHITFIGSP 212 (465)
T ss_pred -------CCCCEEEEECCH
Confidence 245666666633
No 376
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=24.13 E-value=2.1e+02 Score=24.50 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=31.6
Q ss_pred ccceeeeecCCCCCHHHHHHHHHhCCCCcEEcccccccc
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET 125 (204)
Q Consensus 87 ~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~ 125 (204)
+..|.+++||+.....+++.+.+.| ++++++. ...|+
T Consensus 442 ~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~s 478 (545)
T KOG2531|consen 442 PPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNS 478 (545)
T ss_pred CCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCch
Confidence 5789999999999999999999999 8899888 33343
No 377
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=23.91 E-value=1.6e+02 Score=22.79 Aligned_cols=48 Identities=27% Similarity=0.269 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCCCC
Q 028779 50 LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLG 100 (204)
Q Consensus 50 ~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~ 100 (204)
.+.-.+.+++.++.+..++|.=+..|++.. ...+.+++.+++-...+.
T Consensus 166 l~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~l~~l~~ivlD~s~~D 213 (252)
T PF14617_consen 166 LEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALSLSNLKRIVLDWSYLD 213 (252)
T ss_pred HHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCCcccCeEEEEcCCccc
Confidence 444455667778999999999999999663 445678898888776444
No 378
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=23.62 E-value=6e+02 Score=23.65 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=50.1
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHh------cCceEEEech----HHHHHHHhC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEK------HRVTHIWVVP----PLILALAKH 78 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~------~~~t~~~~~p----~~~~~l~~~ 78 (204)
-+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++ ....++..++ .....|+++
T Consensus 110 GVv~~I~pwn~P~~~~~~~~~~ALaaGN~vVlKps~~a~~t~~~~~~l~~~~l~~aG~p~g~v~vv~g~~~~~~~~L~~~ 189 (862)
T PRK13805 110 GVIAGITPTTNPTSTAIFKALIALKTRNPIIFSFHPRAQKSSIAAAKIVLDAAVAAGAPKDIIQWIEEPSVELTNALMNH 189 (862)
T ss_pred eEEEEEeCCCChhHHHHHHHHHHHHhCCcEEEECCcchHHHHHHHHHHHHHHHHHcCcCcccEEEecCCCHHHHHHHHcC
Confidence 45666777777655444 466789999999998753 23445566543 2334444443 345556554
Q ss_pred CCCCCCCCccceeeeecCCCCCHHHHHHHHHh
Q 028779 79 GLVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110 (204)
Q Consensus 79 ~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~ 110 (204)
+ .++.+++.|. +.+.+...+.
T Consensus 190 ~--------~vd~I~fTGs---~~v~~~a~~~ 210 (862)
T PRK13805 190 P--------GIALILATGG---PGMVKAAYSS 210 (862)
T ss_pred C--------CccEEEecCC---HHHHHHHHhc
Confidence 2 3556667663 3455544444
No 379
>PRK09188 serine/threonine protein kinase; Provisional
Probab=23.13 E-value=31 Score=28.30 Aligned_cols=8 Identities=13% Similarity=-0.151 Sum_probs=7.0
Q ss_pred hhhhcccc
Q 028779 196 FRKIMHSF 203 (204)
Q Consensus 196 ~~gw~~~~ 203 (204)
.+||||||
T Consensus 207 ~dgW~~TG 214 (365)
T PRK09188 207 SRIWLATG 214 (365)
T ss_pred cCcEEeCC
Confidence 48999998
No 380
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=22.70 E-value=84 Score=16.84 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=11.6
Q ss_pred CCCCCCCCcceEEEe
Q 028779 161 QKPLPPNQLGEIWLR 175 (204)
Q Consensus 161 ~~~~~~g~~Gel~v~ 175 (204)
.+++++|+.|+|.++
T Consensus 30 ~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 30 KKPIAPGESGKIKVT 44 (45)
T ss_pred cceECCCCEEEEEEE
Confidence 367888999998764
No 381
>PF10102 DUF2341: Domain of unknown function (DUF2341); InterPro: IPR018765 This domain of unknown function is found in various bacterial proteins, including MotA/TolQ/ExbB proton channels and other transport proteins.
Probab=22.27 E-value=1.6e+02 Score=18.62 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=25.1
Q ss_pred CceEEEEeCCCCCCCC--------CCCcceEEEecCCcc------hhhcCCcccc
Q 028779 150 GVEALIVSVDTQKPLP--------PNQLGEIWLRGPNMM------RGIMLIASII 190 (204)
Q Consensus 150 ~~~v~v~d~~~~~~~~--------~g~~Gel~v~g~~~~------~gY~~~~~~t 190 (204)
+-+++++| +++++++ .++...||||-|.+. .=||+++.++
T Consensus 3 g~DIRf~d-~~~~~L~ywIE~wd~~~~~A~iWVkvp~i~~~~~~i~lyyGn~~a~ 56 (89)
T PF10102_consen 3 GSDIRFYD-SDGTPLPYWIESWDPTNEQALIWVKVPSIPAGSTTIYLYYGNPSAT 56 (89)
T ss_pred CccEEEEe-CCCCEeEEEEEECCCCCCeEEEEEECCCCCCCCcEEEEEECCCCCc
Confidence 34567776 6666542 245788999988543 3467655544
No 382
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=21.99 E-value=5e+02 Score=22.10 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=47.0
Q ss_pred CCcEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC----CHHHHHHHHHh-cC---ceEEEec-hHHHHHHHhCCCC
Q 028779 12 LDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF----DLEMFLRAIEK-HR---VTHIWVV-PPLILALAKHGLV 81 (204)
Q Consensus 12 ~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~-~~---~t~~~~~-p~~~~~l~~~~~~ 81 (204)
+--+++...|+++-..+.. .+..+|..|.++++-+.. ....+.+++++ .. ++++.+. ......|+++
T Consensus 136 P~GVV~~I~PwN~Pl~~~~~~i~~AL~aGN~VvlKPs~~~p~~~~~l~~~~~~~lP~g~~~~v~g~~~~~~~~l~~~--- 212 (475)
T cd07117 136 PIGVVGQIIPWNFPFLMAAWKLAPALAAGNTVVIKPSSTTSLSLLELAKIIQDVLPKGVVNIVTGKGSKSGEYLLNH--- 212 (475)
T ss_pred ecceEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCccCcHHHHHHHHHHHHhCCcCcEEEEecCcHHHHHHHhcC---
Confidence 3458888999988766544 356799999999998652 34455566654 22 2233221 2234445443
Q ss_pred CCCCCccceeeeecCCC
Q 028779 82 KKFDLSSLKLVGSGAAP 98 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~ 98 (204)
+.++.+.++|.+
T Consensus 213 -----~~v~~v~fTGs~ 224 (475)
T cd07117 213 -----PGLDKLAFTGST 224 (475)
T ss_pred -----CCCCEEEEECcH
Confidence 246667777743
No 383
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=21.89 E-value=5.2e+02 Score=22.29 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=43.6
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-CCHH---H----HHHHHHhc--CceEEEec---hHHHHHHHhCC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-FDLE---M----FLRAIEKH--RVTHIWVV---PPLILALAKHG 79 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~~~~---~----~~~~i~~~--~~t~~~~~---p~~~~~l~~~~ 79 (204)
-+++...|+++-..+.. .+..+|..|.++++-+. ..|. . +.+++.+. ....+..+ ......|+++
T Consensus 156 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~~~~~~l~~~~~~~aGlP~gvv~~v~g~~~~~~~l~~~- 234 (508)
T PLN02315 156 GIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAMTKLVAEVLEKNNLPGAIFTSFCGGAEIGEAIAKD- 234 (508)
T ss_pred eEEEEECCCcchHHHHHHHHhHHHHcCCEEEeeCCCcChHHHHHHHHHHHHHHHHcCCCcccEEEecCChHHHHHHhcC-
Confidence 46677888877644333 46689999999999875 3332 2 34555553 22333333 3334445443
Q ss_pred CCCCCCCccceeeeecCC
Q 028779 80 LVKKFDLSSLKLVGSGAA 97 (204)
Q Consensus 80 ~~~~~~l~~lr~~~~~G~ 97 (204)
+.++.+.+.|.
T Consensus 235 -------~~v~~v~fTGS 245 (508)
T PLN02315 235 -------TRIPLVSFTGS 245 (508)
T ss_pred -------CCCCEEEEECC
Confidence 34566777773
No 384
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=21.74 E-value=5.5e+02 Score=22.50 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=48.7
Q ss_pred EEEecchhhHHHH-HHHHHhHhccCcEEEEcCCC-CH-------HHHHHHHHhc--CceEEEech-----HHHHHHHhCC
Q 028779 16 FLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKF-DL-------EMFLRAIEKH--RVTHIWVVP-----PLILALAKHG 79 (204)
Q Consensus 16 ~l~~~pl~h~~g~-~~~~~~~l~~G~~~~~~~~~-~~-------~~~~~~i~~~--~~t~~~~~p-----~~~~~l~~~~ 79 (204)
++...|+.+-.-. ...+..+|..|.++++-|.. .+ ..+.+++.+. ....+..+| ..-..|+++
T Consensus 197 v~vI~p~nfP~~~~~~~i~~ALaaGN~VVvKPs~~a~ls~~~~~~~i~~~l~eAGlP~gvv~~v~g~~~~~~~~~L~~~- 275 (549)
T cd07127 197 ALVIGCSTFPTWNGYPGLFASLATGNPVIVKPHPAAILPLAITVQVAREVLAEAGFDPNLVTLAADTPEEPIAQTLATR- 275 (549)
T ss_pred EEEEeCcCChHHHHHHHHHHHHhcCCeEEEECCcccchhHHHHHHHHHHHHHHcCcCcccEEEEeCCCcHHHHHHHHhC-
Confidence 5555555554222 22467899999999998752 22 2334666664 334444443 345556554
Q ss_pred CCCCCCCccceeeeecCCCCCHHHHHHHHHhC
Q 028779 80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV 111 (204)
Q Consensus 80 ~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~ 111 (204)
+.++.+.++| +.+.-+++.+..
T Consensus 276 -------p~v~~I~FTG---S~~~G~~i~~~a 297 (549)
T cd07127 276 -------PEVRIIDFTG---SNAFGDWLEANA 297 (549)
T ss_pred -------CCCCEEEEEC---CHHHHHHHHHHh
Confidence 3466777777 445556655554
No 385
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=21.64 E-value=4.5e+02 Score=21.46 Aligned_cols=91 Identities=22% Similarity=0.209 Sum_probs=60.8
Q ss_pred hccCcEEEEcCC-CCHHHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCCccceeeeecCCCCCHHHHHHHHHhC-CC
Q 028779 36 LQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV-PS 113 (204)
Q Consensus 36 l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~~~~~G~~l~~~~~~~~~~~~-~~ 113 (204)
+-.|+.|.+.+. .+--+.++.+...+++.++.+|.-+...+...+ + -+-.+++.|+.-|.-..+...+.+ |+
T Consensus 188 ~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aD-----l-vIgaVLIpgakaPkLvt~e~vk~MkpG 261 (371)
T COG0686 188 IGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKAD-----L-VIGAVLIPGAKAPKLVTREMVKQMKPG 261 (371)
T ss_pred hccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhcc-----E-EEEEEEecCCCCceehhHHHHHhcCCC
Confidence 334666666653 233455777888889999999998887765432 1 244677888888877777766665 56
Q ss_pred CcEE----ccccccccccccccc
Q 028779 114 ATVI----QGYGLTETSGIATME 132 (204)
Q Consensus 114 ~~~~----~~yG~tE~~~~~~~~ 132 (204)
..++ ..-|+-|+....+..
T Consensus 262 sVivDVAiDqGGc~Et~~~TTh~ 284 (371)
T COG0686 262 SVIVDVAIDQGGCFETSHPTTHD 284 (371)
T ss_pred cEEEEEEEcCCCceeccccccCC
Confidence 6555 556888887555543
No 386
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=20.93 E-value=5.1e+02 Score=21.85 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=44.3
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCCC-CH---HHHHHHHH----h--cC---ceEEEec-hHHHHHHHhC
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKF-DL---EMFLRAIE----K--HR---VTHIWVV-PPLILALAKH 78 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~~-~~---~~~~~~i~----~--~~---~t~~~~~-p~~~~~l~~~ 78 (204)
-+++...|+++-..... .+..+|..|.++++-+.. .| ..+.++++ + .. ++++.+. ......|+++
T Consensus 97 GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~~~~~~~~~~~~~l~eaG~P~g~v~~v~g~~~~~~~~l~~~ 176 (436)
T cd07122 97 GVIAALIPSTNPTSTAIFKALIALKTRNAIIFSPHPRAKKCSIEAAKIMREAAVAAGAPEGLIQWIEEPSIELTQELMKH 176 (436)
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHcCCcEEEECCcchhhHHHHHHHHHHHHHHHcCCCchhEEEecCCChHHHHHHHcC
Confidence 36777788887665554 366899999999998752 22 33444443 3 23 3344332 2345566655
Q ss_pred CCCCCCCCccceeeeecC
Q 028779 79 GLVKKFDLSSLKLVGSGA 96 (204)
Q Consensus 79 ~~~~~~~l~~lr~~~~~G 96 (204)
+ .++.+.+.|
T Consensus 177 ~--------~v~~v~ftG 186 (436)
T cd07122 177 P--------DVDLILATG 186 (436)
T ss_pred C--------CcCEEEEcC
Confidence 3 355666666
No 387
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.65 E-value=5.8e+02 Score=22.34 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=59.9
Q ss_pred cEEEEecchhhHHHHHHHHHhHhccCcEEEEcC--CC-CH----HHHHHHHHhcCceEEEechHHHHHHHhCCCCCCCCC
Q 028779 14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KF-DL----EMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~--~~-~~----~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l 86 (204)
-|.+...|.--......-.|..+..|.-+.+.. +. +- .++...=...+++++..+|.-+..-+.. .+.++|
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~--~k~f~L 293 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN--TKSFDL 293 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC--CCCcch
Confidence 355667788877777777888888888777664 22 22 2222222234579999999877766654 478999
Q ss_pred ccceeeeec-CCCCCHHHHHHHH
Q 028779 87 SSLKLVGSG-AAPLGKELMEECA 108 (204)
Q Consensus 87 ~~lr~~~~~-G~~l~~~~~~~~~ 108 (204)
++||.+++- .+.+-.+..+.|.
T Consensus 294 k~LrfLVIDEADRll~qsfQ~Wl 316 (620)
T KOG0350|consen 294 KHLRFLVIDEADRLLDQSFQEWL 316 (620)
T ss_pred hhceEEEechHHHHHHHHHHHHH
Confidence 999987764 3344444444443
No 388
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=20.36 E-value=5.2e+02 Score=21.72 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=30.6
Q ss_pred cEEEEecchhhHHHHHH-HHHhHhccCcEEEEcCC-C---CHHHHHHHHHh
Q 028779 14 YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAK-F---DLEMFLRAIEK 59 (204)
Q Consensus 14 d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~~~~~~-~---~~~~~~~~i~~ 59 (204)
-+++...|+++-..... .+..+|..|.++++-+. . ....+.+++.+
T Consensus 119 GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~~~~~ 169 (457)
T cd07108 119 GVVGAILPWNAPLMLAALKIAPALVAGNTVVLKAAEDAPLAVLLLAEILAQ 169 (457)
T ss_pred eEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 46777778887655443 46689999999999764 2 23445555554
Done!