Query 028779
Match_columns 204
No_of_seqs 115 out of 1075
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 18:20:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028779.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2271-2275//hhsearch_pdb/028779hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 1.0 1 1 233.1 18.4 196 7-202 217-415 (536)
2 3tsy_A Fusion protein 4-coumar 1.0 1 1 232.8 17.3 196 7-202 264-462 (979)
3 3rix_A Luciferase, luciferin 4 1.0 1 1 230.5 18.2 192 8-202 229-420 (550)
4 2d1s_A Luciferase, luciferin 4 1.0 1 1 230.5 19.9 192 8-202 231-422 (548)
5 1mdb_A 2,3-dihydroxybenzoate-A 1.0 1 1 225.0 11.3 195 5-202 215-411 (539)
6 4fuq_A Malonyl COA synthetase; 1.0 1 1 223.1 14.3 193 5-202 188-380 (503)
7 3t5a_A Long-chain-fatty-acid-- 1.0 1 1 222.0 10.3 195 6-202 217-464 (480)
8 3o83_A Peptide arylation enzym 1.0 1 1 221.9 9.9 195 5-202 224-420 (544)
9 3fce_A D-alanine--poly(phospho 1.0 1 1 219.4 14.7 196 5-202 177-381 (512)
10 1pg4_A Acetyl-COA synthetase; 1.0 1 1 218.9 16.4 196 6-202 291-498 (652)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=1.00 E-value=1 Score=233.08 Aligned_cols=196 Identities=35% Similarity=0.535 Sum_probs=179.0
Q ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCC
Q ss_conf 01488881899813356587888998757305848998379899999999984571089835699999983899787898
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (204)
.+.+.++|++++.+|++|++++...++.++..|+++++.+.+++..+++.++++++|++..+|+++..+++.......++
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 296 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDL 296 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCC
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCC
T ss_conf 44678887799955728888779999999965987999079999999999998497489704899999970800035887
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 66103432488899999999998689980770325654446201358---988888899845468883599974899988
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN---SFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 87 ~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~ 163 (204)
+++|.+++||+++++++.+++.+.|++..+.+.||+||++.+++... ........+++|+|+++++++|+|++++++
T Consensus 297 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~ 376 (536)
T 3ni2_A 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGAS 376 (536)
T ss_dssp TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCB
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCC
T ss_conf 40009998777799999999999779997321006541163432454668864458899756767983899993899967
Q ss_pred CCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf 999995129995687401103882010001110000001
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS 202 (204)
Q Consensus 164 ~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~ 202 (204)
+++|+.|||+++||+++.|||++|+.|++.|..+|||||
T Consensus 377 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~T 415 (536)
T 3ni2_A 377 LPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT 415 (536)
T ss_dssp CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred CCCCCCCEEEEECCCCCHHHCCCHHHHHHHCCCCCCEEC
T ss_conf 989996289996836213544895677743367985471
No 2
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=1.00 E-value=1 Score=232.84 Aligned_cols=196 Identities=36% Similarity=0.578 Sum_probs=178.5
Q ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCC
Q ss_conf 01488881899813356587888998757305848998379899999999984571089835699999983899787898
Q 028779 7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL 86 (204)
Q Consensus 7 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 86 (204)
.+.+.++|++++.+|++|++++...++.++..|+++++.+.+++..+++.++++++|++..+|+++..|.+.......++
T Consensus 264 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l 343 (979)
T 3tsy_A 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDL 343 (979)
T ss_dssp SSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCC
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCC
T ss_conf 44679997799978569999999999988753848999088999999999998597299747999999985765557884
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 66103432488899999999998689980770325654446201358---988888899845468883599974899988
Q 028779 87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN---SFAGSRNIGSAGALAPGVEALIVSVDTQKP 163 (204)
Q Consensus 87 ~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~ 163 (204)
+++|.++++|+++++++.+++.+.|+++++.+.||+||++.+++... ........+++|+|+++++++|+|++++++
T Consensus 344 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~ 423 (979)
T 3tsy_A 344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDS 423 (979)
T ss_dssp TTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 20289999678799999999999779984885444545327877077878876666778767315776799984888888
Q ss_pred CCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf 999995129995687401103882010001110000001
Q 028779 164 LPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS 202 (204)
Q Consensus 164 ~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~ 202 (204)
+++|++|||+++||+++.|||++|+.|++.|..+|||||
T Consensus 424 ~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~T 462 (979)
T 3tsy_A 424 LSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462 (979)
T ss_dssp CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCEEC
T ss_conf 899986279997887034116993560643368982876
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=1.00 E-value=1 Score=230.53 Aligned_cols=192 Identities=35% Similarity=0.502 Sum_probs=176.5
Q ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCC
Q ss_conf 14888818998133565878889987573058489983798999999999845710898356999999838997878986
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (204)
+++.++|++++.+|++|++++.. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......+++
T Consensus 229 ~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 307 (550)
T 3rix_A 229 NQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS 307 (550)
T ss_dssp CCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCT
T ss_pred CCCCCCCEEEEECHHHHHHHHHH-HHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 56798868999162999999999-99999869889996898989999999974975999585999999727322336760
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 61034324888999999999986899807703256544462013589888888998454688835999748999889999
Q 028779 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167 (204)
Q Consensus 88 ~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g 167 (204)
++|.++++|+++++++.+++.+.++...+.+.||+||++..+....... ...+++|+|+++++++|+|+++++++++|
T Consensus 308 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~~~~~~~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385 (550)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC--CCTTEEEEECTTCEEEEECTTTCCBCCTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCC--CCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 1148999468799999999999759984510657575642043578778--88998510169808999848898499989
Q ss_pred CCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf 95129995687401103882010001110000001
Q 028779 168 QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS 202 (204)
Q Consensus 168 ~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~ 202 (204)
+.|||+++||+++.|||++++.|++.|+.+|||||
T Consensus 386 ~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~T 420 (550)
T 3rix_A 386 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHS 420 (550)
T ss_dssp CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred CCEEEEEECCCCCHHHCCCHHHHHHHCCCCCCEEC
T ss_conf 97699993787151212895566530079987353
No 4
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=1.00 E-value=1 Score=230.46 Aligned_cols=192 Identities=31% Similarity=0.491 Sum_probs=175.0
Q ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCC
Q ss_conf 14888818998133565878889987573058489983798999999999845710898356999999838997878986
Q 028779 8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS 87 (204)
Q Consensus 8 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 87 (204)
+++.++|++++.+|++|++++...++.++ .|+++++.+.+++..+++.++++++|++.++|+++..|.+.......+++
T Consensus 231 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~ 309 (548)
T 2d1s_A 231 NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLS 309 (548)
T ss_dssp CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCT
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCC
T ss_conf 47896656998162898999999999974-58679975789999999999970993999568999998717443446621
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 61034324888999999999986899807703256544462013589888888998454688835999748999889999
Q 028779 88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167 (204)
Q Consensus 88 ~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g 167 (204)
++|.++++|+++++++.+++.+.|++..+.+.||+||++..++..... ....+++|+|+++++++|+|+++++++++|
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g 387 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPN 387 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCEEEECCCC--CCCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 006999868649999999999874998544146566546365505766--677788885577764899967767617999
Q ss_pred CCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf 95129995687401103882010001110000001
Q 028779 168 QLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS 202 (204)
Q Consensus 168 ~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~ 202 (204)
+.|||+++||+++.|||++++.|++.|..+|||||
T Consensus 388 ~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 422 (548)
T 2d1s_A 388 RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422 (548)
T ss_dssp CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred CCEEEEECCHHHHHHHCCCHHHHHHCCCCCCEEEC
T ss_conf 97199988877860416996785301168957986
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=1.00 E-value=1 Score=224.97 Aligned_cols=195 Identities=22% Similarity=0.266 Sum_probs=169.1
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHHH-HHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCC
Q ss_conf 21014888818998133565878889-98757305848998379899999999984571089835699999983899787
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (204)
...++++++|++++.+|++|.+++.. .++.+|..|+++++.+.+++..+++.++++++|++.++|+++..+++......
T Consensus 215 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 294 (539)
T 1mdb_A 215 VEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR 294 (539)
T ss_dssp HHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC
T ss_pred HHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCC
T ss_conf 88528797777999635524221557889999971889997899999999999998198699856899999984704467
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCC
Q ss_conf 89866103432488899999999998689980770325654446201358988888899845468883-59997489998
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGV-EALIVSVDTQK 162 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~v~i~d~~~~~ 162 (204)
.+++++|.+++||+++++++.+++.+.+ ++.+.+.||+||++...... ........+++|+|+++. +++|+| ++++
T Consensus 295 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~ 371 (539)
T 1mdb_A 295 DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRL-DDPEEIIVNTQGKPMSPYDESRVWD-DHDR 371 (539)
T ss_dssp CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCT-TSCHHHHHHCCCEESSTTCEEEEEC-TTSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCC-CCCHHHCCCCCCCCCCCCCEEEEEC-CCCC
T ss_conf 8863100899858879999999999973-99579997689886521479-9808752787776559975479999-9979
Q ss_pred CCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf 8999995129995687401103882010001110000001
Q 028779 163 PLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS 202 (204)
Q Consensus 163 ~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~ 202 (204)
++++|+.|||+++||+++.|||++++.|++.|..+|||||
T Consensus 372 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 372 DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred CCCCCCCCEEEEECCCCCHHHCCCHHHHHHHCCCCCCEEC
T ss_conf 9968996469862732143126893662444347997064
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=1.00 E-value=1 Score=223.10 Aligned_cols=193 Identities=27% Similarity=0.383 Sum_probs=174.3
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCC
Q ss_conf 21014888818998133565878889987573058489983798999999999845710898356999999838997878
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF 84 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 84 (204)
...+++.++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++ ++|++.++|+++..+++.......
T Consensus 188 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~ 265 (503)
T 4fuq_A 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKE 265 (503)
T ss_dssp HHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTT
T ss_pred HHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHH--HCCEEEEHHHHHHHHHHCCCCCCC
T ss_conf 997389998779996772777778999999998198999858899999999985--247898789999999848786523
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 98661034324888999999999986899807703256544462013589888888998454688835999748999889
Q 028779 85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164 (204)
Q Consensus 85 ~l~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~ 164 (204)
+++++|.+++||+++++++.+++.+.+ +.++.+.||+||++..+.... ......+++|+|+++++++|+|+++++++
T Consensus 266 ~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~ 342 (503)
T 4fuq_A 266 TTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKEL 342 (503)
T ss_dssp TTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBC
T ss_pred CHHHCEEEEECCCCCCHHHHHHHHHHH-CCCCCCEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 530047999888889999999999975-987513076110675102688--87876983036888808999978889899
Q ss_pred CCCCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf 99995129995687401103882010001110000001
Q 028779 165 PPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS 202 (204)
Q Consensus 165 ~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~ 202 (204)
++|++|||+++||+++.|||++|+.|++.|..+|||||
T Consensus 343 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 380 (503)
T 4fuq_A 343 PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFIT 380 (503)
T ss_dssp CTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEE
T ss_pred CCCCCEEEEEECCCHHHHHCCCHHHHHHHHCCCCCEEC
T ss_conf 48984699998785536656894666764178997376
No 7
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=1.00 E-value=1 Score=221.99 Aligned_cols=195 Identities=17% Similarity=0.231 Sum_probs=165.9
Q ss_pred CCCCCCC------CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCC----CHHHHHHHHHHCCCEEEEECHHHHHHH
Q ss_conf 1014888------818998133565878889987573058489983798----999999999845710898356999999
Q 028779 6 QETAGEL------DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILAL 75 (204)
Q Consensus 6 ~~~~~~~------~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l 75 (204)
..+.... +|++++++|++|++++...++.++..|+++++.+.. ++..+++.++++++| +..+|+++..+
T Consensus 217 ~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l 295 (480)
T 3t5a_A 217 SGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFEL 295 (480)
T ss_dssp HHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHH
T ss_pred HHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHCHHHHHHHHHHHCEE-EEECHHHHHHH
T ss_conf 98545644578988768994787575488999999997688568778999987999999998864346-75076899999
Q ss_pred HHC----CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHC-----CCCCEECCCCCCCCCCCCCCCCCCCC---------
Q ss_conf 838----997878986610343248889999999999868-----99807703256544462013589888---------
Q 028779 76 AKH----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV-----PSATVIQGYGLTETSGIATMENSFAG--------- 137 (204)
Q Consensus 76 ~~~----~~~~~~~l~~lr~~~~~G~~~~~~~~~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~--------- 137 (204)
+.. ......+++++|.++++|+++++++.+++.+.| ++..+.+.||+||++..++.......
T Consensus 296 ~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~ 375 (480)
T 3t5a_A 296 AARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTE 375 (480)
T ss_dssp HHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHH
T ss_pred HHHHCCCCCCCCCCHHHHHEEEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEEECHH
T ss_conf 98556700013566122102465687689999999999985569983231455465344226760366888614776577
Q ss_pred --------------CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCC--------
Q ss_conf --------------8889984546888359997489998899999512999568740110388201000111--------
Q 028779 138 --------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG-------- 195 (204)
Q Consensus 138 --------------~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~-------- 195 (204)
.....++|+|++ ++++|+|++++++++.|++|||+++||+++.|||++|++|++.|.
T Consensus 376 ~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~ 454 (480)
T 3t5a_A 376 SLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSP 454 (480)
T ss_dssp HHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCT
T ss_pred HHCCCCEEECCCCCCCEEEECCCCCC-CEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 85168556547888605552376667-77999849888289999789999837862333006941137877654124457
Q ss_pred ---HHHHCCC
Q ss_conf ---0000001
Q 028779 196 ---FRKIMHS 202 (204)
Q Consensus 196 ---~~gw~~~ 202 (204)
.+|||||
T Consensus 455 ~~~~~~w~~T 464 (480)
T 3t5a_A 455 GTPEGPWLRT 464 (480)
T ss_dssp TCCCCCBEEE
T ss_pred CCCCCCEEEC
T ss_conf 8878885330
No 8
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=1.00 E-value=1 Score=221.92 Aligned_cols=195 Identities=20% Similarity=0.278 Sum_probs=172.1
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHHH-HHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCC
Q ss_conf 21014888818998133565878889-98757305848998379899999999984571089835699999983899787
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK 83 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 83 (204)
.+.+++.++|++++++|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++......
T Consensus 224 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 303 (544)
T 3o83_A 224 AEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK 303 (544)
T ss_dssp HHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH
T ss_pred HHHHCCCCCCEEEEECCCCEEEECCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHCHHHCC
T ss_conf 99738898772788337635760105779999974988998889998999999999789889935599999995523213
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEECCCCC
Q ss_conf 89866103432488899999999998689980770325654446201358988888899845468-88359997489998
Q 028779 84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQK 162 (204)
Q Consensus 84 ~~l~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~d~~~~~ 162 (204)
.+++++|.+++||+++++++.+++.+.+ ++++.+.||+||++........ .......++|+|+ ++++++|+| ++++
T Consensus 304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~ 380 (544)
T 3o83_A 304 DQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDD-SDEQIFTTQGRPISSDDEIKIVD-EQYR 380 (544)
T ss_dssp HHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH-CCCEEEEECCCCCCCEEECCCC-CHHHCCCCCCEECCCCCEEEEEC-CCCC
T ss_conf 5678401899848879999999999872-9807703456645536325789-36653577744469985799978-9988
Q ss_pred CCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHCCC
Q ss_conf 8999995129995687401103882010001110000001
Q 028779 163 PLPPNQLGEIWLRGPNMMRGIMLIASIILSSWGFRKIMHS 202 (204)
Q Consensus 163 ~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~gw~~~ 202 (204)
++++|++|||+++||+++.||+++|+.|++.|..+|||||
T Consensus 381 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 420 (544)
T 3o83_A 381 EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS 420 (544)
T ss_dssp BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEE
T ss_pred CCCCCCEEEEEEECCCCCHHHCCCHHHHHHHCCCCCCEEC
T ss_conf 8988983599993677053324893554430788897676
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=1.00 E-value=1 Score=219.43 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=175.1
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCC
Q ss_conf 2101488881899813356587888998757305848998379---8999999999845710898356999999838997
Q 028779 5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV 81 (204)
Q Consensus 5 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 81 (204)
...+++.++|++++.+|++|+.++.. ++.++..|+++++.+. +++..+++.++++++|.+..+|+++..++.....
T Consensus 177 ~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 255 (512)
T 3fce_A 177 VEDFNLQTGQVFLNQAPFSFDLSVMD-IYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASF 255 (512)
T ss_dssp HHHTTCCSSCEEEECSCTTSGGGHHH-HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC
T ss_pred HHHCCCCCCCEEEEECCCCHHHHHHH-HHHHHHCCCEEEECCHHHHHCHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCC
T ss_conf 98629998877999677507689999-99999679999987978954999999999973995999568999999864013
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 8789866103432488899999999998689980770325654446201358988---8888998454688835999748
Q 028779 82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSV 158 (204)
Q Consensus 82 ~~~~l~~lr~~~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~---~~~~~~~~G~~~~~~~v~i~d~ 158 (204)
...+++++|.++++|+++++++.+++.+.|+++++.+.||+||++..++...... ......++|+|.++++++|+|
T Consensus 256 ~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d- 334 (512)
T 3fce_A 256 SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK- 334 (512)
T ss_dssp STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-
T ss_pred CCHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC-
T ss_conf 6000866218999367199999999999789978996815274644311688143213436778543026996899999-
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCC---HHHHCCC
Q ss_conf 9998899999512999568740110388201000111---0000001
Q 028779 159 DTQKPLPPNQLGEIWLRGPNMMRGIMLIASIILSSWG---FRKIMHS 202 (204)
Q Consensus 159 ~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~---~~gw~~~ 202 (204)
++++++++|+.|||+++||+++.|||++++.|++.|. .+|||||
T Consensus 335 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~T 381 (512)
T 3fce_A 335 EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKT 381 (512)
T ss_dssp SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEE
T ss_pred CCCCCCCCCCEEEEEEECCCCCHHHCCCCHHHHHCCCCCCCCEEEEC
T ss_conf 99989999971799980154182006994010311624899779847
No 10
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=1.00 E-value=1 Score=218.89 Aligned_cols=196 Identities=21% Similarity=0.264 Sum_probs=171.3
Q ss_pred CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCC----CCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCC-
Q ss_conf 101488881899813356587888998757305848998379----899999999984571089835699999983899-
Q 028779 6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL- 80 (204)
Q Consensus 6 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~- 80 (204)
..+++.++|++++.+|++|+.++...++.+|..|+++++.+. +++..+++.++++++|+++.+|++++.|.+...
T Consensus 291 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 370 (652)
T 1pg4_A 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370 (652)
T ss_dssp HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred HHCCCCCCCEEEECCCCEEEECHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCC
T ss_conf 83089998789991687344200788898897485599989988899989999999985990998579999999844843
Q ss_pred -CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCC--CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf -78789866103432488899999999998689--980770325654446201358988888899845468883599974
Q 028779 81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 157 (204)
Q Consensus 81 -~~~~~l~~lr~~~~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d 157 (204)
....+++++|.++++|+++++++.+++.+.++ ++.+.+.||+||++..++.........+.+++|+|+++++++|+|
T Consensus 371 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d 450 (652)
T 1pg4_A 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD 450 (652)
T ss_dssp GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC
T ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 22348967358999845889999999999983987874773325765046400379887676678656676897589999
Q ss_pred CCCCCCCCCCCCCEEEEEC--CCCCHHHCCCCCCCCCCCC--HHHHCCC
Q ss_conf 8999889999951299956--8740110388201000111--0000001
Q 028779 158 VDTQKPLPPNQLGEIWLRG--PNMMRGIMLIASIILSSWG--FRKIMHS 202 (204)
Q Consensus 158 ~~~~~~~~~g~~Gel~v~~--~~~~~gY~~~~~~~~~~~~--~~gw~~~ 202 (204)
+++++++.|+.|||+++| |+++.|||++++.+.+.+. .+|||||
T Consensus 451 -~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~T 498 (652)
T 1pg4_A 451 -NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFS 498 (652)
T ss_dssp -TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEE
T ss_pred -CCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEC
T ss_conf -999896799618999914888426444087777776444249988888
Done!