BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028780
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQ6|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The
Saccharomyces Cerevisiae Ran-Binding Protein Mog1p
Length = 189
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 34/206 (16%)
Query: 7 SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
E L+GGAI++ P F D S +R+VPD QEV+V+ RD ES+I +LL+
Sbjct: 5 KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE 64
Query: 56 FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAI 114
+D D A F ++DL L++ V + G ++ L V G+ +
Sbjct: 65 -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 121
Query: 115 SKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQ 173
AQ +V + +A +RL + TDV+++ IN PL++ ++ + +PA
Sbjct: 122 --------AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARC 166
Query: 174 SGFMQMSEVFKLAVSSFKVNDWSLFG 199
Q+ + V F V D SLF
Sbjct: 167 HAVYQL---LQEMVRKFHVVDTSLFA 189
>pdb|1JHS|A Chain A, Protein Mog1 E65a Mutant
Length = 188
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 34/206 (16%)
Query: 7 SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
E L+GGAI++ P F D S +R+VPD Q V+V+ RD ES+I +LL+
Sbjct: 4 KEVELYGGAITTVVPPGFIDASTLREVPDTQAVYVNSRRDEEEFEDGLATNESIIVDLLE 63
Query: 56 FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAI 114
+D D A F ++DL L++ V + G ++ L V G+ +
Sbjct: 64 -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 120
Query: 115 SKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQ 173
AQ +V + +A +RL + TDV+++ IN PL++ ++ + +PA
Sbjct: 121 --------AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARC 165
Query: 174 SGFMQMSEVFKLAVSSFKVNDWSLFG 199
Q+ + V F V D SLF
Sbjct: 166 HAVYQL---LQEMVRKFHVVDTSLFA 188
>pdb|1VHO|A Chain A, Crystal Structure Of A Putative PeptidaseENDOGLUCANASE
Length = 346
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 5 LYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPS 44
+Y++ + G I PH QD + ++VP + E+FVD S
Sbjct: 103 IYTKNGIERGVIGXLAPH-LQDSESRKKVPTYDEIFVDLS 141
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 133 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 186
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 30 NLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAKTTGFGTAEPAAPCGNEGLFEVIKVGS 89
Query: 187 -VSSFKVNDW 195
VSS + DW
Sbjct: 90 NVSSLEAGDW 99
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 133 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 186
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 52 NLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAKTTGFGTAEPAAPCGNEGLFEVIKVGS 111
Query: 187 -VSSFKVNDW 195
VSS + DW
Sbjct: 112 NVSSLEAGDW 121
>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GU7|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
Length = 364
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 133 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 186
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 30 NLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGS 89
Query: 187 -VSSFKVNDW 195
VSS + DW
Sbjct: 90 NVSSLEAGDW 99
>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|B Chain B, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|C Chain C, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
Length = 364
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 133 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 186
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 30 NLAPNEVIVKTLGSPVNPSDINQIQGVNPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGS 89
Query: 187 -VSSFKVNDW 195
VSS + DW
Sbjct: 90 NVSSLEAGDW 99
>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 133 NLRLKEVGTDVLVTAYEPLLINPL-----SESASTVGAGLPVPATQSGFMQMSEVFKLA- 186
NL EV L + P IN + S+ A T G G PA G + EV K+
Sbjct: 52 NLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGS 111
Query: 187 -VSSFKVNDW 195
VSS + DW
Sbjct: 112 NVSSLEAGDW 121
>pdb|1E51|A Chain A, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
pdb|1E51|B Chain B, Crystal Structure Of Native Human Erythrocyte 5-
Aminolaevulinic Acid Dehydratase
Length = 330
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 97 RYKDLPATVTTAVGQMA-ISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINP 155
++ DLP V G+ A + G Q V A + G D+++T Y P L+
Sbjct: 267 KHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQW 326
Query: 156 LSE 158
L E
Sbjct: 327 LKE 329
>pdb|1PV8|A Chain A, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
pdb|1PV8|B Chain B, Crystal Structure Of A Low Activity F12l Mutant Of Human
Porphobilinogen Synthase
Length = 330
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 97 RYKDLPATVTTAVGQMA-ISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINP 155
++ DLP V G+ A + G Q V A + G D+++T Y P L+
Sbjct: 267 KHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQW 326
Query: 156 LSE 158
L E
Sbjct: 327 LKE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,814,085
Number of Sequences: 62578
Number of extensions: 225892
Number of successful extensions: 545
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 13
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)