BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028780
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54ML6|MOG1_DICDI Probable ran guanine nucleotide release factor OS=Dictyostelium
discoideum GN=mog1 PE=3 SV=1
Length = 195
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 15/201 (7%)
Query: 3 GDLYSERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGD 62
+ + +R L+GGAI P RF DV++ R +PDHQE+F D D+S+I EL +F+ + +
Sbjct: 2 SETFEKRQLYGGAIEIDIPRRFIDVTSYRHIPDHQELFSDEKSDQSVIIELNEFQDHISN 61
Query: 63 NGSAAWFLQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLP---ATVTTAV--GQMAISKG 117
+ + L +DA T ++S ++ L ++P A++ V Q I+K
Sbjct: 62 ANAIKHHYEVLV--EDAGIST--DKSVILNFRELTQAEMPNFDASIPKYVLLAQQKIAKF 117
Query: 118 RQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFM 177
+ A+N + +Y+A +RL++ TD+L+T E + + P S S + V P QS
Sbjct: 118 NET--AENTINIYMALVRLEKSKTDLLITFNEAIALAPTSSSVAVVQNLTP-SNDQSKSE 174
Query: 178 QMSEVFKLAVSSFKVNDWSLF 198
Q+ F + SFK+ D+SLF
Sbjct: 175 QL---FLTMLKSFKIKDYSLF 192
>sp|Q32PE2|MOG1_BOVIN Ran guanine nucleotide release factor OS=Bos taurus GN=RANGRF PE=2
SV=1
Length = 186
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 15/193 (7%)
Query: 8 ERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAA 67
+ PLFGGA S++ P DVS++R VPDHQEVF D+SLI ELL+ + V +A
Sbjct: 6 DNPLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAAR 65
Query: 68 WFLQDLATEQDAEGCTL-LEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNI 126
+ +D+ Q+A + Q V+E LR A + + GQ ++K Q +
Sbjct: 66 YHFEDVGGVQEARAVQVETVQPLVLEKLALRGCCQEAWILS--GQQQVAKENQ--QVAKY 121
Query: 127 VKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLA 186
V ++ A LRL + TD+L+T +P P +S L +P G F+
Sbjct: 122 VTLHQALLRLPQYQTDLLLTFNQP----PPENRSSLGPENLSIPPWSLG------DFEQL 171
Query: 187 VSSFKVNDWSLFG 199
V+S ++D ++FG
Sbjct: 172 VTSLTLHDPNIFG 184
>sp|Q9JIB0|MOG1_MOUSE Ran guanine nucleotide release factor OS=Mus musculus GN=Rangrf
PE=1 SV=1
Length = 185
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
PLFGGA S+ P DVS++R VPD+QEVF P D+SLI ELL+ + V +A +
Sbjct: 8 PLFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYH 67
Query: 70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVK 128
+D+ Q A +L Q +E LR A + Q+A ++ ++ V
Sbjct: 68 FEDVGRVQGARAVHVLSVQPLCLENLSLRGCCQDAWSLSGKQQVA----KENQQVAKDVT 123
Query: 129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVS 188
++ A LRL + TD+L+T +P S S P P + S F Q+ V+
Sbjct: 124 LHQALLRLPQYQTDLLLTFNQPPCH---SRSLGPENLSCP-PWSLSNFEQL-------VT 172
Query: 189 SFKVNDWSLFG 199
S ++D +LFG
Sbjct: 173 SLTLHDPNLFG 183
>sp|Q9HD47|MOG1_HUMAN Ran guanine nucleotide release factor OS=Homo sapiens GN=RANGRF
PE=1 SV=1
Length = 186
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 10 PLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWF 69
PLFGGA S+ P DVS++R VPD+QEVF P D+SLI ELL+ + V +A +
Sbjct: 8 PLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYH 67
Query: 70 LQDLATEQDAEGCTLLE-QSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVK 128
+D+ Q A + Q +E LR + A V + Q+A ++ ++ V
Sbjct: 68 FEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIA----KENQQVAKDVT 123
Query: 129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGL-PVPATQSGFMQMSEVFKLAV 187
++ A LRL + TD+L+T +P P +S L P P + F Q+ V
Sbjct: 124 LHQALLRLPQYQTDLLLTFNQP----PPDNRSSLGPENLSPAPWSLGDFEQL-------V 172
Query: 188 SSFKVNDWSLFG 199
+S ++D ++FG
Sbjct: 173 TSLTLHDPNIFG 184
>sp|O75002|MOG1_SCHPO Nuclear import protein mog1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mog1 PE=3 SV=1
Length = 190
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 11 LFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRDE-SLIFELLDFKLDVGDNGSAAWF 69
LFGGA+ + FP +F D S +RQ+PD+QEVF+ S++ ++I ELL+ D AA+
Sbjct: 4 LFGGALCADFPPKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYH 63
Query: 70 LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVG-QMAISKGRQGREAQNIVK 128
+A + DA + + E + A+ ++ G Q + KG++ E+ V
Sbjct: 64 FNSIAFDNDASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEKGKRNPESATNVA 123
Query: 129 VYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPVPATQSGFMQMSEVFKLAVS 188
+++ + L + TD++++ PL P + S + +P P+ QS E +
Sbjct: 124 IFVNVITLIDFQTDIVISVNAPL---PNTSSVPSSVENIP-PSDQSIVRAALETIQRVTR 179
Query: 189 SFKVNDWSLFG 199
S + D ++F
Sbjct: 180 SLVLVDKTVFA 190
>sp|P47123|MOG1_YEAST Nuclear import protein MOG1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MOG1 PE=1 SV=1
Length = 218
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 34/206 (16%)
Query: 7 SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPSRD-----------ESLIFELLD 55
E L+GGAI++ P F D S +R+VPD QEV+V+ RD ES+I +LL+
Sbjct: 34 KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLE 93
Query: 56 FKLDVGDNGSAAWF-LQDLATEQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAI 114
+D D A F ++DL L++ V + G ++ L V G+ +
Sbjct: 94 -TVDKSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQ--GTKFTGLVMEVANKWGKPDL 150
Query: 115 SKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLIN-PLSESASTVGAGLPVPATQ 173
AQ +V + +A +RL + TDV+++ IN PL++ ++ + +PA
Sbjct: 151 --------AQTVV-IGVALIRLTQFDTDVVIS------INVPLTKEEASQASNKELPARC 195
Query: 174 SGFMQMSEVFKLAVSSFKVNDWSLFG 199
Q+ + V F V D SLF
Sbjct: 196 HAVYQL---LQEMVRKFHVVDTSLFA 218
>sp|Q4ZZW4|DADA_PSEU2 D-amino acid dehydrogenase small subunit OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=dadA PE=3 SV=1
Length = 433
Score = 33.9 bits (76), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 106 TTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTD----------VLVTAYEPLLINP 155
TT + +MA++ G + R QNI ++ A R+ V D + + +Y P L+ P
Sbjct: 204 TTRLAEMAVALGVEFRYGQNIERLDHAGDRINGVWIDGKLETADRYVLALGSYSPQLLKP 263
Query: 156 LSESASTV---GAGLPVPATQSGFMQMS----EVFKLAVSSF 190
L A G L VP T S E +K+A++ F
Sbjct: 264 LGIKAPVYPLKGYSLTVPITNPDMAPTSTILDETYKVAITRF 305
>sp|Q48PZ1|DADA_PSE14 D-amino acid dehydrogenase small subunit OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=dadA PE=3
SV=1
Length = 433
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 106 TTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTD----------VLVTAYEPLLINP 155
TT + +MA+ G + R QNI ++ A R+ V D + + +Y P L+ P
Sbjct: 204 TTRLAEMAVELGVEFRYGQNIERLDHAGDRINGVWIDGKLETADRYVLALGSYSPQLLKP 263
Query: 156 LSESASTV---GAGLPVPATQSGFMQMS----EVFKLAVSSF 190
L A G L VP T S E +K+A++ F
Sbjct: 264 LGIKAPVYPLKGYSLTVPITNPAMAPTSTILDETYKVAITRF 305
>sp|Q7VHF2|LPXC_HELHP UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=lpxC PE=3 SV=1
Length = 299
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 73 LATEQDAEGCTLLEQSGVVEAPGLRYKD--LPATVTTAVGQMAI 114
LA D C +L++S ++ GLRYK+ + + A+G MA+
Sbjct: 200 LAKGGDLSNCIVLDESSILNKEGLRYKEEFVRHKILDAIGDMAL 243
>sp|Q88BB6|DADA_PSESM D-amino acid dehydrogenase small subunit OS=Pseudomonas syringae
pv. tomato (strain DC3000) GN=dadA PE=3 SV=1
Length = 433
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 106 TTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTD-VLVTA---------YEPLLINP 155
TT + QMA+ G + R QNI ++ A + V D VL TA Y P L+ P
Sbjct: 204 TTRLAQMAVELGVEFRYGQNIERLEHAGDTVSGVWIDGVLETADRYVLALGSYSPQLLKP 263
Query: 156 LSESASTV---GAGLPVPATQSGFMQMS----EVFKLAVSSF 190
L A G L VP + S E +K+A++ F
Sbjct: 264 LGIKAPVYPLKGYSLTVPISNPAMAPTSTILDETYKVAITRF 305
>sp|Q9DBS9|OSBL3_MOUSE Oxysterol-binding protein-related protein 3 OS=Mus musculus
GN=Osbpl3 PE=1 SV=2
Length = 855
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 35 DHQEVFVDPSRDESLIFELLDFKLDVGDNGSAAWFLQDLATEQDAEGCTL---LEQSGVV 91
D QEV + PS E+ I + + D+ DN S L +L+ + D E TL LE SG
Sbjct: 421 DAQEVLLSPSSSENEISDDDSYVSDISDNLS----LDNLSNDLDNERQTLGPVLESSG-- 474
Query: 92 EAPGLRYKDLPA--TVTTAVGQMAISKGRQGREAQNI 126
EA R LPA T++V +I + G++ +
Sbjct: 475 EARSKRRTSLPAPGPNTSSVSLWSILRNNIGKDLSKV 511
>sp|P54113|PUR91_YEAST Bifunctional purine biosynthesis protein ADE16 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ADE16 PE=1
SV=1
Length = 591
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 125 NIVKVYLANLRLKEVGTDVLVTAYEPLLINPLSESASTVGAGLPV-PATQSGFMQMSEVF 183
NIV V A + KEV V+ YEP +N LS+ + L + P G M+ EVF
Sbjct: 322 NIVDVATAKIISKEVSDGVIAPGYEPEALNILSKKKNGKYCILQIDPNYVPGQMESREVF 381
Query: 184 KLAVSSFKVND 194
+ + K ND
Sbjct: 382 GVTLQQ-KRND 391
>sp|Q0I8A7|NU2C_SYNS3 NAD(P)H-quinone oxidoreductase subunit 2 OS=Synechococcus sp.
(strain CC9311) GN=ndhB PE=3 SV=1
Length = 523
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 109 VGQMAISKGRQGREAQNIVKVY---------LANLRLKEVGTDVLVTAYEPLLINPLSES 159
+G + + ++ +EA +VK Y L LR+ V VLVTA +L NPL E
Sbjct: 441 IGVIKMMVVKEPQEASEVVKAYPPINWSTMGLPPLRVALV-LCVLVTAVGGILSNPLFEW 499
Query: 160 ASTVGAGLPV----PATQSG 175
AS+ AG P+ AT SG
Sbjct: 500 ASSTVAGTPLLQQAIATSSG 519
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,503,064
Number of Sequences: 539616
Number of extensions: 2911452
Number of successful extensions: 7144
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7130
Number of HSP's gapped (non-prelim): 14
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)