Query 028780
Match_columns 204
No_of_seqs 113 out of 188
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:24:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028780.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2271-2275//hhsearch_pdb/028780hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eq6_A MOG1P; alpha-beta, prot 1.0 1 1 373.1 13.4 174 7-199 5-189 (189)
2 3gio_A Putative uncharacterize 1.0 1 1 19.0 1.2 15 130-144 132-146 (186)
3 2wcr_A TNF-alpha inducer prote 1.0 1 1 18.0 1.0 15 130-144 105-119 (159)
4 2ybx_A Phosphatidylinositol-5- 1.0 1 1 14.4 -1.5 17 185-201 253-269 (394)
5 2gk9_A Phosphatidylinositol-4- 1.0 1 1 14.2 -0.4 18 185-202 242-259 (392)
6 3clo_A Transcriptional regulat 1.0 1 1 14.1 -0.5 12 53-65 87-98 (258)
7 3nfg_B DNA-directed RNA polyme 1.0 1 1 13.9 2.0 26 16-41 3-34 (123)
8 1jmx_G Amine dehydrogenase; ox 1.0 1 1 13.1 -0.8 14 8-21 31-44 (79)
9 1pby_C Quinohemoprotein amine 1.0 1 1 13.1 -1.5 13 9-21 32-44 (79)
10 1o97_C Electron transferring f 1.0 1 1 12.8 -0.9 16 30-45 7-23 (264)
No 1
>1eq6_A MOG1P; alpha-beta, protein transport; 1.90A {Saccharomyces cerevisiae} SCOP: d.107.1.1 PDB: 1jhs_A
Probab=1.00 E-value=1 Score=373.10 Aligned_cols=174 Identities=28% Similarity=0.392 Sum_probs=138.7
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCC-----------CCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 51134453268216998722567633699624876399-----------9913899800124787962379899996511
Q 028780 7 SERPLFGGAISSSFPHRFQDVSNIRQVPDHQEVFVDPS-----------RDESLIFELLDFKLDVGDNGSAAWFLQDLAT 75 (204)
Q Consensus 7 ~~~~LyGGAIt~~lP~~fiDvS~lRqVPDnQEVFv~~~-----------~d~SiIvEiLE~v~~~~d~~A~~~Hf~dla~ 75 (204)
++++||||||+|.||++|+|||+|||||||||||++++ +|+|||||||||+++++|.+|++|||+|||+
T Consensus 5 ~~~~LfGGAI~~~lP~~f~DvS~lRqVPDnQEVFv~~~~~~~~~~~~~~~d~SiIiElLE~v~~~~d~~A~~~hf~Dla~ 84 (189)
T 1eq6_A 5 KEVELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLETVDKSDLKEAWQFHVEDLTE 84 (189)
T ss_dssp EEEEEGGGTEEEEECTTEEEGGGTSCCCTTEEEEEECCCSSCCCSSSCCSCCEEEEEEEECCSCCSHHHHHHHHHHHHHG
T ss_pred CCCCCCCCEEEEECCCCCCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 66646572489607987310420424899867977574444434466677755999960446776758999999998761
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCC
Q ss_conf 44678832873300320598877899931799874567514988867754189999999727988208999811575798
Q 028780 76 EQDAEGCTLLEQSGVVEAPGLRYKDLPATVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKEVGTDVLVTAYEPLLINP 155 (204)
Q Consensus 76 ~N~~~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~G~q~v~k~~~~~~~~~~V~i~l~liRL~~~~TDilIt~NvP~~~~~ 155 (204)
+|++..+.++ ....++. +...|. ++.+.++|+++. ..+++|.|||+||||++++||||||+|+|+..++
T Consensus 85 ~n~~~~~~v~-~~~~~~~--------~~~~~~-~~~~~~~k~~~~-~~~~~v~i~l~liRL~~~~TDiLIt~NvP~~~~~ 153 (189)
T 1eq6_A 85 LNGTTKWEAL-QEDTVQQ--------GTKFTG-LVMEVANKWGKP-DLAQTVVIGVALIRLTQFDTDVVISINVPLTKEE 153 (189)
T ss_dssp GGTEEEEEEE-EEEEEET--------TTEEEE-EEEEEEETTSCT-TSSCCEEEEEEEEEEGGGTEEEEEEEEEECCHHH
T ss_pred CCCCCCEEEE-EECCCCC--------CCCCEE-EEEEEEECCCCC-CCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCH
T ss_conf 2467523577-5303678--------874227-888643404765-6655069999999668877408999833788622
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEECCCCCCC
Q ss_conf 86543345999988875555341899999865000570488999
Q 028780 156 LSESASTVGAGLPVPATQSGFMQMSEVFKLAVSSFKVNDWSLFG 199 (204)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~sf~V~D~sLF~ 199 (204)
.+.. + +...+ ....+++++|+++++||+|+|||||+
T Consensus 154 ~~~~----~-~~~~~---~~~~~~~~~f~~~~~Sf~V~Dw~LF~ 189 (189)
T 1eq6_A 154 ASQA----S-NKELP---ARCHAVYQLLQEMVRKFHVVDTSLFA 189 (189)
T ss_dssp HHHH----T-TTCCC---HHHHHHHHHHHHHHHTCEESCGGGCC
T ss_pred HHCC----C-CCCCC---HHHHHHHHHHHHHHHHEEEECHHCCC
T ss_conf 2203----4-44455---02568999999998515712602139
No 2
>3gio_A Putative uncharacterized protein; antiparallel beta sheet, four-helix bundle, loop, DNA binding protein; 2.40A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=19.03 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=10.2
Q ss_pred EEEEEECCCCCEEEE
Q ss_conf 999997279882089
Q 028780 130 YLANLRLKEVGTDVL 144 (204)
Q Consensus 130 ~l~liRL~~~~TDil 144 (204)
.++|+|...++.|.|
T Consensus 132 VFmLvRv~gy~~~~L 146 (186)
T 3gio_A 132 VFALVRARGFDKDAL 146 (186)
T ss_dssp EEEEEEEEEECHHHH
T ss_pred EEEEEEECCCCHHHH
T ss_conf 478887446797899
No 3
>2wcr_A TNF-alpha inducer protein; HP0596, TIP-alpha, immune system; 1.70A {Helicobacter pylori} PDB: 2wcq_A 3guq_A
Probab=1.00 E-value=1 Score=18.05 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=10.4
Q ss_pred EEEEEECCCCCEEEE
Q ss_conf 999997279882089
Q 028780 130 YLANLRLKEVGTDVL 144 (204)
Q Consensus 130 ~l~liRL~~~~TDil 144 (204)
.++|+|...++.|.|
T Consensus 105 VF~LvRv~~y~~~~L 119 (159)
T 2wcr_A 105 VFALVRARGFDKDAL 119 (159)
T ss_dssp EEEEEEEEEECHHHH
T ss_pred EEEEEEECCCCHHHH
T ss_conf 278876336787899
No 4
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=14.36 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.8
Q ss_pred HHHCEEEECCCCCCCCC
Q ss_conf 86500057048899988
Q 028780 185 LAVSSFKVNDWSLFGGT 201 (204)
Q Consensus 185 ~~~~sf~V~D~sLF~~~ 201 (204)
..+++++|.||||..|.
T Consensus 253 ~FL~~~~iMDYSLLvGI 269 (394)
T 2ybx_A 253 EFLAQLKLMDYSLLVGI 269 (394)
T ss_dssp HHHHHTTEESCEEEEEE
T ss_pred HHHHHCCCCCCEEEEEE
T ss_conf 99987787664048777
No 5
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.20 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHCEEEECCCCCCCCCC
Q ss_conf 865000570488999888
Q 028780 185 LAVSSFKVNDWSLFGGTA 202 (204)
Q Consensus 185 ~~~~sf~V~D~sLF~~~~ 202 (204)
..+++++|.||||..|..
T Consensus 242 ~FL~~~~iMDYSLLvGi~ 259 (392)
T 2gk9_A 242 EFLVQLKIMDYSLLLGIH 259 (392)
T ss_dssp HHHHHTTCCCCCEECCCB
T ss_pred HHHHHCCCCCCEEEEEEE
T ss_conf 999876876630587663
No 6
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=1.00 E-value=1 Score=14.10 Aligned_cols=12 Identities=8% Similarity=-0.175 Sum_probs=5.7
Q ss_pred EECCCCCCCCHHH
Q ss_conf 0012478796237
Q 028780 53 LLDFKLDVGDNGS 65 (204)
Q Consensus 53 iLE~v~~~~d~~A 65 (204)
|++++ +++|..+
T Consensus 87 ll~~i-~p~D~~~ 98 (258)
T 3clo_A 87 IYRRI-HPEDLVE 98 (258)
T ss_dssp HHTTB-CHHHHHH
T ss_pred HHHHC-CHHHHHH
T ss_conf 99867-8677999
No 7
>3nfg_B DNA-directed RNA polymerase I subunit RPA34; triple barrel, transcription, dimerization; 2.51A {Candida glabrata} PDB: 3nff_B
Probab=1.00 E-value=1 Score=13.86 Aligned_cols=26 Identities=15% Similarity=0.576 Sum_probs=22.3
Q ss_pred EEEECCCCCCCCCCCCCCC------CCCEEEE
Q ss_conf 6821699872256763369------9624876
Q 028780 16 ISSSFPHRFQDVSNIRQVP------DHQEVFV 41 (204)
Q Consensus 16 It~~lP~~fiDvS~lRqVP------DnQEVFv 41 (204)
|.-.-|++|--++.+...| +++|||+
T Consensus 3 ~~F~pP~~y~K~~~lk~f~~~~~~l~~KevWl 34 (123)
T 3nfg_B 3 MGYQPPSDYKQCKHLKSFPVSELKGDNKELWL 34 (123)
T ss_dssp -CCCCCTTEEECCSCBCCCGGGTTCTTEEEEE
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEE
T ss_conf 65449998412466545555555678837899
No 8
>1jmx_G Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.137.9.1 PDB: 1jmz_G*
Probab=1.00 E-value=1 Score=13.06 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=5.4
Q ss_pred CCCCCCCEEEEECC
Q ss_conf 11344532682169
Q 028780 8 ERPLFGGAISSSFP 21 (204)
Q Consensus 8 ~~~LyGGAIt~~lP 21 (204)
+..|||-+-.|=-|
T Consensus 31 EaDLYgC~dpCwWP 44 (79)
T 1jmx_G 31 EADLYGCSDPCWXP 44 (79)
T ss_dssp GGGHHHHHTTTSST
T ss_pred HHHHHCCCCCCCCC
T ss_conf 33440666644373
No 9
>1pby_C Quinohemoprotein amine dehydrogenase 9 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.137.9.1 PDB: 1jju_C*
Probab=1.00 E-value=1 Score=13.05 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=4.5
Q ss_pred CCCCCCEEEEECC
Q ss_conf 1344532682169
Q 028780 9 RPLFGGAISSSFP 21 (204)
Q Consensus 9 ~~LyGGAIt~~lP 21 (204)
..|||-+-.|=-|
T Consensus 32 aDLYgC~dpCwWP 44 (79)
T 1pby_C 32 ADLYGCADPCWXP 44 (79)
T ss_dssp HHHHHHHTTTSST
T ss_pred HHHHCCCCCCCCC
T ss_conf 3440666644373
No 10
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=1.00 E-value=1 Score=12.78 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCCCCC-CEEEECCCC
Q ss_conf 6336996-248763999
Q 028780 30 IRQVPDH-QEVFVDPSR 45 (204)
Q Consensus 30 lRqVPDn-QEVFv~~~~ 45 (204)
+.||||+ +++-+++++
T Consensus 7 vK~Vpd~~~~~~~~~~~ 23 (264)
T 1o97_C 7 VKQTAALEEDFEIREDG 23 (264)
T ss_dssp CCEEEEECTTCCBCTTS
T ss_pred EEECCCCCCEEEECCCC
T ss_conf 87667877556885999
Done!