BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028781
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FJO|C Chain C, Structure Of The Rev1 Ctd-Rev37-Pol Kappa Rir Complex
Length = 210
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 14/205 (6%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A +L+EFLEVA+ +++++ +YP G F++R+ N+ VQ + HP+L
Sbjct: 4 LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
YI ++ + ++K VE+V V+ + + P+E++VF+I +++ + S++ H+E
Sbjct: 63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLL--SHVE 120
Query: 117 FSLRSFLIXXXXXXXXXXXXPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQW 171
L +F++ P GC + + A ++ ++ KD WI D +
Sbjct: 121 QLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179
Query: 172 Q-QPPLITPIKSMSSDSLSVQLYLE 195
P + P+K+M+SD L +QLY+E
Sbjct: 180 HMHDPRLIPLKTMTSDILKMQLYVE 204
>pdb|3ABD|A Chain A, Structure Of Human Rev7 In Complex With A Human Rev3
Fragment In A Monoclinic Crystal
pdb|3ABD|B Chain B, Structure Of Human Rev7 In Complex With A Human Rev3
Fragment In A Monoclinic Crystal
pdb|3ABE|C Chain C, Structure Of Human Rev7 In Complex With A Human Rev3
Fragment In A Tetragonal Crystal
pdb|3VU7|C Chain C, Crystal Structure Of Rev1-rev7-rev3 Ternary Complex
Length = 227
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 106/203 (52%), Gaps = 10/203 (4%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A +L EFLEVA+ +++++ +YP G F++R+ N+ VQ + HP+L
Sbjct: 20 LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 78
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
YI ++ + ++K VE+V V+ + + P+E++VF+I S S H+E
Sbjct: 79 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQL 138
Query: 119 LRSFLIXXXXXXXXXXXXPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
L +F++ P GC + + A ++ ++ KD WI D +
Sbjct: 139 LAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 197
Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
P + P+K+M+SD L +QLY+E
Sbjct: 198 HDPRLIPLKTMTSDILKMQLYVE 220
>pdb|2V64|D Chain D, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|E Chain E, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|H Chain H, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2
Length = 207
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 27/174 (15%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 24 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 83
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIXXXXXXX 131
+ K V+++ V+ SN + LER+ F I ++ G ++ ++ +RS +
Sbjct: 84 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKGSGEKSQKA-IQDEIRSVI-------- 134
Query: 132 XXXXXPQGCRWEITAYFCSLPQVNTSKDAELWIPTDT-----KQWQQ--PPLIT 178
+ITA LP + S +L I TD ++W++ P IT
Sbjct: 135 ----------RQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFIT 178
>pdb|1DUJ|A Chain A, Solution Structure Of The Spindle Assembly Checkpoint
Protein Human Mad2
Length = 187
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 8 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 67
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
+ K V+++ V+ SN + LER+ F I +++
Sbjct: 68 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 101
>pdb|1KLQ|A Chain A, The Mad2 Spindle Checkpoint Protein Undergoes Similar
Major Conformational Changes Upon Binding To Either Mad1
Or Cdc20
Length = 197
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 8 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 67
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
+ K V+++ V+ SN + LER+ F I +++
Sbjct: 68 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 101
>pdb|1S2H|A Chain A, The Mad2 Spindle Checkpoint Protein Possesses Two Distinct
Natively Folded States
Length = 206
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 17 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 76
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
+ K V+++ V+ SN + LER+ F I +++
Sbjct: 77 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 110
>pdb|1GO4|A Chain A, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|B Chain B, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|C Chain C, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20.
pdb|1GO4|D Chain D, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2
Binding Motif In Mad1 And Cdc20
Length = 205
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 16 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 75
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
+ K V+++ V+ SN + LER+ F I +++
Sbjct: 76 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 109
>pdb|2V64|A Chain A, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|C Chain C, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|F Chain F, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2
Length = 213
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 24 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 83
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
+ K V+++ V+ SN + LER+ F I +++
Sbjct: 84 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 117
>pdb|3GMH|A Chain A, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|B Chain B, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|C Chain C, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|D Chain D, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|E Chain E, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|F Chain F, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|G Chain G, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|H Chain H, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|I Chain I, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|J Chain J, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|K Chain K, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|L Chain L, Crystal Structure Of The Mad2 Dimer
Length = 207
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 18 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 77
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
+ K V+++ V+ SN + LER+ F I +++
Sbjct: 78 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 111
>pdb|2QYF|A Chain A, Crystal Structure Of The Mad2P31(COMET)MAD2-Binding
Peptide Ternary Complex
pdb|2QYF|C Chain C, Crystal Structure Of The Mad2P31(COMET)MAD2-Binding
Peptide Ternary Complex
Length = 206
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 17 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 76
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
+ K V+++ V+ SN + LER+ F I +++
Sbjct: 77 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKT 110
>pdb|2VFX|A Chain A, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|B Chain B, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|C Chain C, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|D Chain D, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|E Chain E, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|F Chain F, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|G Chain G, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|H Chain H, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|I Chain I, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|J Chain J, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|K Chain K, Structure Of The Symmetric Mad2 Dimer
pdb|2VFX|L Chain L, Structure Of The Symmetric Mad2 Dimer
Length = 206
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 17 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 76
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQS 105
+ K V+++ V+ SN + LER+ F I +++
Sbjct: 77 LYKSSVQKLVVVISNIESGEVLERWQFDIESDKT 110
>pdb|4AEZ|B Chain B, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|E Chain E, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|H Chain H, Crystal Structure Of Mitotic Checkpoint Complex
Length = 203
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
++++++EF E A+ S++F +G+YP+ F+ R L + + +++ YI VS L +
Sbjct: 15 SSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKW 74
Query: 73 I-QKGLVERVAVIFSNANNVPLERYVFKI-MVN-----QSYGSMVEEGHLEFSLRSFLIX 125
+ K + + + VI S + LER+ F + MV+ Q+ G+ +E ++ +++ +
Sbjct: 75 MFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQ 134
Query: 126 XXXXXXXXXXXPQGCRWEITAYFCSLPQVNTSKDAELWIPTD 167
+ C + + Y KD+E +PTD
Sbjct: 135 ITATVTFLPQLEEQCTFNVLVY--------ADKDSE--VPTD 166
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 22/93 (23%)
Query: 48 LVVQRARHPQLRDYIHSSVSSLL----LFIQKGLVERVAVIFSNANN----------VPL 93
LV+ +A HP L +Y +S +L +QK ER ++ +N N+ +P
Sbjct: 42 LVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKFGFERYNILQNNGNHQEVFHVHFHVIPF 101
Query: 94 ERYVFKIMVN--------QSYGSMVEEGHLEFS 118
++M+N + Y MVEE L S
Sbjct: 102 VSADERLMINWKAKSVSDKEYSEMVEEARLRVS 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,113,087
Number of Sequences: 62578
Number of extensions: 170082
Number of successful extensions: 414
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 13
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)