BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028781
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q568H3|MD2L2_DANRE Mitotic spindle assembly checkpoint protein MAD2B OS=Danio rerio
GN=mad2l2 PE=2 SV=1
Length = 211
Score = 110 bits (274), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 120/209 (57%), Gaps = 16/209 (7%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A IL EFLEVAI +++++ +YPSG F++R+ N+ VQ + HPQL
Sbjct: 4 LTRQDLNFGQV-VADILCEFLEVAIHLILYVRDIYPSGIFQKRQKYNVPVQMSCHPQLNQ 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
YI ++ + I+K E+V V+ N + P+ER+VF+I ++ S +++ H+E
Sbjct: 63 YIQDTLHCVKPLIEKNEAEKVVVVIMNKEHHPVERFVFEISQPPLLAISSETLL--SHVE 120
Query: 117 FSLRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQ- 170
LR+ ++K+SV ++ P GC + + A ++ +V KD WI D ++
Sbjct: 121 QLLRAMILKISVCDAVLDSNPPGCTFTVLVHTREAATRNMEKVQVIKDFP-WIVADEQEV 179
Query: 171 -WQQPPLITPIKSMSSDSLSVQLYLENPS 198
++ LI P+K+M+SD L +QLY+E +
Sbjct: 180 HMEEAKLI-PLKTMTSDILKMQLYVEEKT 207
>sp|Q8QFR4|MD2L2_XENLA Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus laevis
GN=mad2l2 PE=1 SV=1
Length = 211
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 115/203 (56%), Gaps = 10/203 (4%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A IL EFLEVA+ +++++ +YP+G F++R+ N+ VQ + HP+L
Sbjct: 4 LTRQDLNFGQV-VADILCEFLEVAVHLILYVREVYPTGIFQKRKKYNVPVQMSCHPELNR 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
YI ++ + I+K VE+V V+ + + P+ER+VF+I S S H+E
Sbjct: 63 YIQDTLHCVKPLIEKNDVEKVVVVILDKEHHPVERFVFEIAQPPLLSISSDSLLSHVEQL 122
Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
LR+F++K+SV ++ P GC + + A ++ ++ KD WI D +
Sbjct: 123 LRAFILKISVCDAVLDNNPPGCTFTLLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 181
Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
Q P + P+K+M+SD L +QLY+E
Sbjct: 182 QEPRLIPLKTMTSDILKMQLYVE 204
>sp|Q28H85|MD2L2_XENTR Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus
tropicalis GN=mad2l2 PE=2 SV=1
Length = 211
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 10/203 (4%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A IL EFLEVA+ +++++ +YP G F++R+ N+ VQ + HP+L
Sbjct: 4 LTRQDLNFGQV-VADILCEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNR 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
YI ++ + I+K VE+V V+ + + P+ER+VF+I S S H+E
Sbjct: 63 YIQDTLHCVKPLIEKNDVEKVVVVILDKEHHPVERFVFEIAQPPLLSISSDSLLSHVEQL 122
Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
LR+F++K+SV ++ P GC + + A ++ ++ KD WI D +
Sbjct: 123 LRAFILKISVCDAVLDNNPPGCTFTLLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 181
Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
Q P + P+K+M+SD L +QLY+E
Sbjct: 182 QEPRLIPLKTMTSDILKMQLYVE 204
>sp|Q2KIP7|MD2L2_BOVIN Mitotic spindle assembly checkpoint protein MAD2B OS=Bos taurus
GN=MAD2L2 PE=2 SV=1
Length = 211
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 117/205 (57%), Gaps = 14/205 (6%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A +L EFLEVA+ +++++ +YP G F++R+ N+ VQ + HP+L
Sbjct: 4 LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
YI ++ + ++K VE+V V+ + + P+E++VF+I ++ S S++ H+E
Sbjct: 63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLPISSDSLL--SHVE 120
Query: 117 FSLRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQW 171
LR+F++K+SV ++ P GC + + A ++ ++ KD WI D +
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179
Query: 172 Q-QPPLITPIKSMSSDSLSVQLYLE 195
P + P+K+M+SD L +QLY+E
Sbjct: 180 HMHDPRLIPLKTMTSDILKMQLYVE 204
>sp|D3Z8D9|MD2L2_RAT Mitotic spindle assembly checkpoint protein MAD2B OS=Rattus
norvegicus GN=Mad2l2 PE=2 SV=1
Length = 211
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 14/205 (6%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A +L+EFLEVA+ +++++ +YP G F++R+ N+ VQ + HP+L
Sbjct: 4 LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
YI ++ + ++K VE+V V+ + + P+E++VF+I +++ + S++ H+E
Sbjct: 63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLL--SHVE 120
Query: 117 FSLRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQW 171
LR+F++K+SV ++ P GC + + A ++ ++ KD WI D +
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179
Query: 172 Q-QPPLITPIKSMSSDSLSVQLYLE 195
P + P+K+M+SD L +QLY+E
Sbjct: 180 HMHDPRLIPLKTMTSDILKMQLYVE 204
>sp|Q9D752|MD2L2_MOUSE Mitotic spindle assembly checkpoint protein MAD2B OS=Mus musculus
GN=Mad2l2 PE=1 SV=2
Length = 211
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 119/205 (58%), Gaps = 14/205 (6%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A +L+EFLEVA+ +++++ +YP G F++R+ N+ VQ + HP+L
Sbjct: 4 LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKI----MVNQSYGSMVEEGHLE 116
YI ++ + ++K VE+V V+ + + P+E++VF+I +++ + S++ H+E
Sbjct: 63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSINSDSLL--SHVE 120
Query: 117 FSLRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQW 171
LR+F++K+SV ++ P GC + + A ++ ++ KD WI D +
Sbjct: 121 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDV 179
Query: 172 Q-QPPLITPIKSMSSDSLSVQLYLE 195
P + P+K+M+SD L +QLY+E
Sbjct: 180 HMHDPRLIPLKTMTSDILKMQLYVE 204
>sp|Q4KWZ6|MD2L2_CHICK Mitotic spindle assembly checkpoint protein MAD2B OS=Gallus gallus
GN=MAD2L2 PE=1 SV=1
Length = 211
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 114/203 (56%), Gaps = 10/203 (4%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A +L+EFLEVA+ +++++ +YP G F++R+ N+ VQ + HP+L
Sbjct: 4 LTRQDLNFGQV-VADVLSEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNQ 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
YI ++ + ++K VE+V V+ + + P+ER+VF+I S S H+E
Sbjct: 63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHHPVERFVFEITQPPLLSISSESLLSHVEQL 122
Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
LR+F++K+SV ++ P GC + + A ++ ++ KD WI D +
Sbjct: 123 LRAFILKISVCDAVLDNNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 181
Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
P + P+K+M+SD L +QLY+E
Sbjct: 182 HDPRLIPLKTMTSDILKMQLYVE 204
>sp|Q9UI95|MD2L2_HUMAN Mitotic spindle assembly checkpoint protein MAD2B OS=Homo sapiens
GN=MAD2L2 PE=1 SV=2
Length = 211
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 113/203 (55%), Gaps = 10/203 (4%)
Query: 1 MDRSDAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRD 60
+ R D QV A +L EFLEVA+ +++++ +YP G F++R+ N+ VQ + HP+L
Sbjct: 4 LTRQDLNFGQV-VADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQ 62
Query: 61 YIHSSVSSLLLFIQKGLVERVAVIFSNANNVPLERYVFKIMV--NQSYGSMVEEGHLEFS 118
YI ++ + ++K VE+V V+ + + P+E++VF+I S S H+E
Sbjct: 63 YIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQL 122
Query: 119 LRSFLIKLSVSKSLSKVLPQGCRWEI-----TAYFCSLPQVNTSKDAELWIPTDTKQWQ- 172
LR+F++K+SV ++ P GC + + A ++ ++ KD WI D +
Sbjct: 123 LRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFP-WILADEQDVHM 181
Query: 173 QPPLITPIKSMSSDSLSVQLYLE 195
P + P+K+M+SD L +QLY+E
Sbjct: 182 HDPRLIPLKTMTSDILKMQLYVE 204
>sp|Q0E7J8|REV7_SCHPO DNA polymerase zeta processivity subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rev7 PE=3 SV=1
Length = 213
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Query: 16 ILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQK 75
I EFL V+I +++ + LYP F + R N +V ++RHP L +YI V S + +Q
Sbjct: 15 IFGEFLLVSIHCILYARRLYPQDLFIKARKYNTIVWQSRHPILCEYIEEVVQSCIEELQT 74
Query: 76 GLVERVAVIFSNANNVPLERYVF---------------KIMVNQSYGSMVEEGHLEFSLR 120
G V +VA+ N ERYVF +I N+ + + ++E+
Sbjct: 75 GSVHQVALSIINKEQREEERYVFSTDSIPIIPDFLLEKQISTNEPFT----DAYVEYMRA 130
Query: 121 SFLIKLSVSKSLSKVLPQGCRW 142
S + L+++ L ++ Q C W
Sbjct: 131 SLIQLLNITNGLP-LIEQECTW 151
>sp|Q9Z1B5|MD2L1_MOUSE Mitotic spindle assembly checkpoint protein MAD2A OS=Mus musculus
GN=Mad2l1 PE=2 SV=2
Length = 205
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 21/192 (10%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + P+L Y+++ V L +
Sbjct: 16 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLTTTDPELIKYLNNVVEQLKEW 75
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKS 131
+ K V+++ V+ SN + LER+ F I +++ EEG +R + ++
Sbjct: 76 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAK---EEG-----VRREKSQKAIQDE 127
Query: 132 LSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDT-----KQWQQ--PPLITPIKSMS 184
+ V+ Q ITA LP + S +L I TD ++W++ P IT + +
Sbjct: 128 IRSVIRQ-----ITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNCEEVR 182
Query: 185 SDSLSVQLYLEN 196
S + ++ N
Sbjct: 183 LRSFTTTIHKVN 194
>sp|Q9XFH3|MAD2_MAIZE Mitotic spindle checkpoint protein MAD2 OS=Zea mays GN=MAD2 PE=2
SV=1
Length = 208
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I++EF A S+++ + +YP +F + + L + + ++++I S S L +
Sbjct: 16 SAAIVSEFFGYAANSILYNRAVYPEESFSKVKKYGLTMLLTQDEGVKNFIASLTSQLSEW 75
Query: 73 IQKGLVERVA-VIFSNANNVPLERYVFKIMVNQSY---GSMVEEGHLEF--SLRSFLIKL 126
++ G ++R+ VI S A + LER+ F I+ + G++ E+ E +++ + ++
Sbjct: 76 LEAGKLQRIVLVIMSKATSEVLERWNFNIVTDAEVVEKGAIKEKSDKEIMREIQAIMRQI 135
Query: 127 SVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDA-ELWIPTDTKQWQQPPLI 177
+ + L + C +++ AY +T DA W+ +D K P ++
Sbjct: 136 ASCITYLPCLDEPCVFDVLAY------TDTDVDAPGTWVESDAKLIDNPQMV 181
>sp|Q54S00|MD2L2_DICDI Mitotic spindle assembly checkpoint protein MAD2B OS=Dictyostelium
discoideum GN=mad2l2 PE=3 SV=1
Length = 332
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 49/84 (58%)
Query: 17 LAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKG 76
+ EFLE + +++++G+YPS F + ++ V +R L YI +S+ SL K
Sbjct: 10 IGEFLETSFHCILYIRGVYPSCLFSKSIKYDIPVPISRSDLLTRYISNSIDSLKPHFLKD 69
Query: 77 LVERVAVIFSNANNVPLERYVFKI 100
+E++++ N + P+E+++F+I
Sbjct: 70 TIEKISLTILNKYDKPIEKFIFEI 93
>sp|O14417|MAD2_SCHPO Mitotic spindle checkpoint component mad2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mad2 PE=1 SV=1
Length = 203
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 89/164 (54%), Gaps = 21/164 (12%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFE--RRRYMNLVVQRARHPQLRDYIHSSVSSLL 70
++++++EF E A+ S++F +G+YP+ F+ R+ +N++V + +++ YI VS L
Sbjct: 15 SSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLV--SVDEEVKTYIRKIVSQLH 72
Query: 71 LFI-QKGLVERVAVIFSNANNVPLERYVFKI-MVN-----QSYGSMVEEGHLEFSLRSFL 123
++ K + + + VI S + LER+ F + MV+ Q+ G+ +E ++ +++ +
Sbjct: 73 KWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALI 132
Query: 124 IKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTD 167
+++ + + L + C + + Y KD+E +PTD
Sbjct: 133 RQITATVTFLPQLEEQCTFNVLVY--------ADKDSE--VPTD 166
>sp|Q556Y9|MD2L1_DICDI Mitotic spindle assembly checkpoint protein MAD2A OS=Dictyostelium
discoideum GN=mad2l1-1 PE=3 SV=1
Length = 203
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+ I+ EF +I +++F +GLYP +F R L + L+DY+ + + L +
Sbjct: 16 STEIVTEFFSYSINTILFQRGLYPPESFTRVAKYGLPILVTNDQSLKDYLDNVLKQLSEW 75
Query: 73 IQKGLVERVAVIFSN-ANNVPLERYVFKIMVN----QSYGSMVEEGHLEFSLRSFLIKLS 127
+ G V+++ ++ ++ LER+VF + + E + +++ + +++
Sbjct: 76 LLSGDVQKLVLVITDIVTKEVLERWVFDVTTDIPKEGEAPRQKPEKEIMNEIQAIIRQIT 135
Query: 128 VSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQ--PPLIT 178
S + +LP C +++ Y TSKD L +P ++W++ P IT
Sbjct: 136 ASVTFLPLLPNACTFDLLVY--------TSKD--LAVP---QKWEESDPKFIT 175
>sp|Q13257|MD2L1_HUMAN Mitotic spindle assembly checkpoint protein MAD2A OS=Homo sapiens
GN=MAD2L1 PE=1 SV=1
Length = 205
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 84/174 (48%), Gaps = 21/174 (12%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I+AEF I S+++ +G+YPS F R + L + +L Y+++ V L +
Sbjct: 16 SAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDW 75
Query: 73 IQKGLVERVAVIFSNANNVP-LERYVFKIMVNQSYGS-----MVEEGHLEFSLRSFLIKL 126
+ K V+++ V+ SN + LER+ F I +++ + ++ +RS + ++
Sbjct: 76 LYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIRQI 135
Query: 127 SVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAELWIPTDTKQWQQ--PPLIT 178
+ + + +L C +++ Y D +L +P ++W++ P IT
Sbjct: 136 TATVTFLPLLEVSCSFDLLIY----------TDKDLVVP---EKWEESGPQFIT 176
>sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2 OS=Arabidopsis thaliana
GN=MAD2 PE=2 SV=1
Length = 209
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+A I++EF A S+++ + +YP +F + + L + ++ ++ + S + +
Sbjct: 17 SAAIVSEFFCYAANSILYNRAVYPEESFVKVKKYGLPMLLIEDESVKSFMSNLTSQISEW 76
Query: 73 IQKGLVERVA-VIFSNANNVPLERYVFKI-----MVNQSYGSMVEEGHLEFSLRSFLIKL 126
++ G ++RV VI S A LER+ F+I +V++ + + +++ + ++
Sbjct: 77 LEAGKLQRVVLVIMSKATGEVLERWNFRIETDNEVVDKGVSREKSDKEIMREIQAIMRQV 136
Query: 127 SVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKDAEL---WIPTDTKQWQQPPLI 177
+ S + L + C +++ AY T D + WI +D K P ++
Sbjct: 137 ASSVTYLPCLDETCVFDVLAY--------TDTDVAVPFTWIESDPKLIANPQMV 182
>sp|P40958|MAD2_YEAST Mitotic spindle checkpoint component MAD2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MAD2 PE=1
SV=1
Length = 196
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 13 TARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLF 72
+ R + EF E +I S+++ +G+YP+ F + +L + + +L+DYI + + +
Sbjct: 10 STRTVTEFFEYSINSILYQRGVYPAEDFVTVKKYDLTLLKTHDDELKDYIRKILLQVHRW 69
Query: 73 IQKGLVER-VAVIFSNANNVPLERYVFKI 100
+ G + V I +ER+ F +
Sbjct: 70 LLGGKCNQLVLCIVDKDEGEVVERWSFNV 98
>sp|P38927|REV7_YEAST DNA polymerase zeta processivity subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=REV7 PE=1
SV=1
Length = 245
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 20 FLEVAITSVVFLKGLYPSGAFERRRYMNL----VVQRARHPQLRDYIHSSVSSLLLFIQK 75
+L+ I ++F + +YP +F+ Y + V RHP L DYI + +L +
Sbjct: 12 YLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTH 71
Query: 76 GLVERVAV-IFSNANNVPLERYV 97
V R ++ I + N++ +E+YV
Sbjct: 72 --VYRFSICIINKKNDLCIEKYV 92
>sp|C0QUJ3|SYGB_PERMH Glycine--tRNA ligase beta subunit OS=Persephonella marina (strain
DSM 14350 / EX-H1) GN=glyS PE=3 SV=1
Length = 705
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 74 QKGLVERVAVIFSNANNVPLERYVFKIMVNQS----YGSMVEEGHLEFSLRSFLIKLSVS 129
+KG + A+ F++ NN+P+E+ KI+ N+ ++++EG +R+F I+ +
Sbjct: 83 EKGNFTKAALAFASKNNIPVEQ--LKIIENEKGRYIGATLIKEGK---DIRTF-IQEVIP 136
Query: 130 KSLSKV-LPQGCRWEITAYFCSLP 152
++K+ P+ RW T + S P
Sbjct: 137 DLITKIPFPKLMRWNETGFRFSRP 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,290,330
Number of Sequences: 539616
Number of extensions: 2427991
Number of successful extensions: 5328
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5295
Number of HSP's gapped (non-prelim): 20
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)