Query 028781
Match_columns 204
No_of_seqs 141 out of 363
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 18:27:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/028781.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2271-2275//hhsearch_pdb/028781hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3abd_A Mitotic spindle assembl 1.0 1 1 374.4 21.4 195 7-201 25-226 (227)
2 4aez_B MAD2, mitotic spindle c 1.0 1 1 353.3 23.1 188 5-198 7-201 (203)
3 2vfx_A Mitotic spindle assembl 1.0 1 1 349.2 23.9 188 6-199 10-203 (206)
4 2qyf_B MAD2L1-binding protein; 1.0 1 1 23.1 10.7 149 7-168 29-197 (240)
5 1knx_A Probable HPR(Ser) kinas 1.0 1 1 19.4 -0.6 60 7-66 66-132 (312)
6 1ko7_A HPR kinase/phosphatase; 1.0 1 1 15.0 -1.1 62 9-75 65-127 (314)
7 1ttw_A Secretion chaperone; ch 1.0 1 1 13.2 2.8 48 29-76 66-123 (138)
8 2a4h_A Selenoprotein SEP15; re 1.0 1 1 12.8 -0.1 62 32-98 17-80 (126)
9 4g4s_P Proteasome assembly cha 1.0 1 1 12.7 2.4 43 46-88 80-124 (269)
10 2ioj_A Hypothetical protein AF 1.0 1 1 12.3 -2.4 15 25-39 75-89 (139)
No 1
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=1.00 E-value=1 Score=374.41 Aligned_cols=195 Identities=30% Similarity=0.518 Sum_probs=177.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 88958789999999999987764326999996410033203012211696699999999999999998397447999997
Q 028781 7 QSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIFS 86 (204)
Q Consensus 7 ~~~~~~s~~~i~efLevaih~ILY~R~vYP~~~F~~~k~y~~~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l~ki~lvI~ 86 (204)
.-..++++++++|||++|||+|||+|||||+++|+++|+||+||++||||+|++||++++.++++||.+|+++|++++|+
T Consensus 25 ~~~~~~~a~iv~eFlevainsILY~RgVYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~klvlvI~ 104 (227)
T 3abd_A 25 LNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVIL 104 (227)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_conf 75567899999999999999998532568858755878418722775588799999999999999998396369999998
Q ss_pred CCCCCEEEEEEEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCC----CC
Q ss_conf 799932457999633215889--988956899999999999995321278999980477999972088888887----88
Q 028781 87 NANNVPLERYVFKIMVNQSYG--SMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSK----DA 160 (204)
Q Consensus 87 ~~~~~~lEr~~Fdi~~~~~~~--~~~~~~~ie~~~ra~l~~l~~~~~~Lp~lp~~~tF~i~v~~~~~~~~~~~~----~~ 160 (204)
+++++++|||+||++.++... ++.++.++++++||+|+||++++++||+||++|||+|++||++++..+.++ .+
T Consensus 105 ~~~~e~lER~~Fdi~~~~~~~~~~~~~~~eie~eira~l~qi~~s~~~Lp~L~~~ctF~ilv~t~~~~~~~~~~~~~~~~ 184 (227)
T 3abd_A 105 DKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKD 184 (227)
T ss_dssp CTTSCEEEEEEEEEECCC------CCHHHHHHHHHHHHHHHHHTGGGTSCCCCTTCEEEEEEEEC--------------C
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 49996788999986426765666765499999999999999999986177888994799999966865556443467678
Q ss_pred CCCEECCCCC-CCCCCCEEEEEEEECCCEEEEEEEEECCCCC
Q ss_conf 9922269557-6899924544675518549999986058755
Q 028781 161 ELWIPTDTKQ-WQQPPLITPIKSMSSDSLSVQLYLENPSLLE 201 (204)
Q Consensus 161 ~~Wi~ad~~~-~~~~~~~~Pl~sv~~~~l~~~~~vE~~~~k~ 201 (204)
++|+++|++. ..++++++|||++++|+|+|++|+||...|.
T Consensus 185 ~pWi~ad~~~~~~~~~~~vplrs~~t~~~~~~~~VEe~~~k~ 226 (227)
T 3abd_A 185 FPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKG 226 (227)
T ss_dssp CCEEECCHHHHCCSSEEEEEEEEEECSSCEEEEEEEEESCCC
T ss_pred CCCEECCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCC
T ss_conf 882488865445688439866778537678999998067789
No 2
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=353.28 Aligned_cols=188 Identities=15% Similarity=0.339 Sum_probs=172.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 68889587899999999999877643269999964100332030122116966999999999999999983974479999
Q 028781 5 DAQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVI 84 (204)
Q Consensus 5 ~~~~~~~~s~~~i~efLevaih~ILY~R~vYP~~~F~~~k~y~~~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l~ki~lv 84 (204)
++.+|+.+|+++++|||++|||+|||+|||||+++|+++|+||+||++||||+|++||++++.++++||.+|++++++++
T Consensus 7 ~~~itlkgS~~iv~eFl~~aInsILY~RgIYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l~~v~~wL~~g~v~klvlv 86 (203)
T 4aez_B 7 RTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLILV 86 (203)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 56200887999999999999999986125698687647662283203525887999999999999999984973189999
Q ss_pred EECCC-CCEEEEEEEEEEECCCCCC-----CCCHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 97799-9324579996332158899-----889568-9999999999999532127899998047799997208888888
Q 028781 85 FSNAN-NVPLERYVFKIMVNQSYGS-----MVEEGH-LEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTS 157 (204)
Q Consensus 85 I~~~~-~~~lEr~~Fdi~~~~~~~~-----~~~~~~-ie~~~ra~l~~l~~~~~~Lp~lp~~~tF~i~v~~~~~~~~~~~ 157 (204)
|++++ ++++|||+|||++.+...+ ..++.+ ++++|||+|+||++++++||+||++|+|++++||+++++
T Consensus 87 I~~~~t~~~lEr~~Fdv~~~~~~~~~d~~~~k~~~e~iq~eira~lrqItasvt~Lp~L~~~ctF~vlvyt~~da~---- 162 (203)
T 4aez_B 87 ITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSE---- 162 (203)
T ss_dssp EEETTTCCEEEEEEEEEEECC---------CHHHHHHHHHHHHHHHHHHHHGGGTSCCCCSCEEEEEEEEEETTCC----
T ss_pred EECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC----
T ss_conf 9748999567999986045676665555455557999999999999999999861899999956899999578888----
Q ss_pred CCCCCCEECCCCCCCCCCCEEEEEEEECCCEEEEEEEEECC
Q ss_conf 78899222695576899924544675518549999986058
Q 028781 158 KDAELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENPS 198 (204)
Q Consensus 158 ~~~~~Wi~ad~~~~~~~~~~~Pl~sv~~~~l~~~~~vE~~~ 198 (204)
.|.+|+++|++. +.+++.+|+|+++|++|++++.|-+..
T Consensus 163 -vp~~W~~sd~~~-i~~~~~v~lrsfsT~~hkv~~~v~yk~ 201 (203)
T 4aez_B 163 -VPTDWVDSDPRI-LRDAEQVQLRSFSTSMHKIDCQVAYRV 201 (203)
T ss_dssp -CCTTEEECCCCC-CSSCEEEEEEEEECSSEEEEEEEEECC
T ss_pred -CCCCCCCCCCEE-CCCCCEEEEEEEECCCEEEEEEEEECC
T ss_conf -897501288866-568467865667547766211898267
No 3
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=1.00 E-value=1 Score=349.15 Aligned_cols=188 Identities=20% Similarity=0.323 Sum_probs=174.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 88895878999999999998776432699999641003320301221169669999999999999999839744799999
Q 028781 6 AQSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVERVAVIF 85 (204)
Q Consensus 6 ~~~~~~~s~~~i~efLevaih~ILY~R~vYP~~~F~~~k~y~~~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l~ki~lvI 85 (204)
+.+|+.+|+++++|||++|||+|||+|||||+++|+++|+||+||++||||+||+||++++.++++||.+|++++++++|
T Consensus 10 ~~itlk~s~~iv~efl~~ain~ILY~RgiYP~e~F~~~k~y~l~v~~sr~p~l~~YI~~~l~~l~~~L~~g~v~klvlvI 89 (206)
T 2vfx_A 10 QGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKSSVQKLVVVI 89 (206)
T ss_dssp CSBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEE
T ss_conf 44658889999999999999999874047986981899975920057568889999999999999999858546999999
Q ss_pred ECCC-CCEEEEEEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 7799-932457999633215889-----9889568999999999999953212789999804779999720888888878
Q 028781 86 SNAN-NVPLERYVFKIMVNQSYG-----SMVEEGHLEFSLRSFLIKLSVSKSLSKVLPQGCRWEITAYFCSLPQVNTSKD 159 (204)
Q Consensus 86 ~~~~-~~~lEr~~Fdi~~~~~~~-----~~~~~~~ie~~~ra~l~~l~~~~~~Lp~lp~~~tF~i~v~~~~~~~~~~~~~ 159 (204)
++++ ++++|||+|||++++... .+.++.++++++|++|+||++++++||+||++|+|+|++|+++++. .
T Consensus 90 ~~~~~~~~lEr~~Fd~~~~~~~~~~~~~~~~~~~ei~~eira~l~qi~~s~~~Lp~L~~~ctF~i~v~t~~~~~-----~ 164 (206)
T 2vfx_A 90 SNIESGEVLERWQFDIESDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLV-----V 164 (206)
T ss_dssp EETTTCCEEEEEEEEEEECTTC---CCCBSCCHHHHHHHHHHHHHHHHHHHTTSCCCCSCEEEEEEEEECTTSC-----C
T ss_pred EECCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCC-----C
T ss_conf 94899866899999842367765556677879999999999999999999704899998818999999847877-----9
Q ss_pred CCCCEECCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCC
Q ss_conf 8992226955768999245446755185499999860587
Q 028781 160 AELWIPTDTKQWQQPPLITPIKSMSSDSLSVQLYLENPSL 199 (204)
Q Consensus 160 ~~~Wi~ad~~~~~~~~~~~Pl~sv~~~~l~~~~~vE~~~~ 199 (204)
|..|+++|+.. ..++..+|+|+++|++|+|++.|.+...
T Consensus 165 P~~W~~sd~~~-i~~~~~v~lrs~sT~~h~v~~~V~y~~~ 203 (206)
T 2vfx_A 165 PEKWEESGPQF-ITNSEEVRLRSFTTTIHKVNSMVAYKIP 203 (206)
T ss_dssp CTTCCCCCCCC-CCSEEEEECCCEECSSEEEEEEEEEECC
T ss_pred CCCCCCCCCCC-CCCCCEEEEEEEECCCEEEEEEEEEECC
T ss_conf 99863386401-6887687556772377588779998367
No 4
>2qyf_B MAD2L1-binding protein; MAD2 family, spindle assembly checkpoint, cell cycle, cell division, mitosis, nucleus, phosphorylation; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=23.09 Aligned_cols=149 Identities=16% Similarity=0.225 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE-ECCCE-----------------EEECCCHHHHHHHHHHHHH
Q ss_conf 88958789999999999987764326999996410033-20301-----------------2211696699999999999
Q 028781 7 QSPQVETARILAEFLEVAITSVVFLKGLYPSGAFERRR-YMNLV-----------------VQRARHPQLRDYIHSSVSS 68 (204)
Q Consensus 7 ~~~~~~s~~~i~efLevaih~ILY~R~vYP~~~F~~~k-~y~~~-----------------v~~sr~p~l~~YI~~~l~~ 68 (204)
-++.+..+.++.|+ |-.|||+|+=-|-- |+.-+ .|.-+ .-.-+...+-+=+++++.+
T Consensus 29 ~~t~~~~~~~v~ei----ik~lLYqR~QIP~~-y~~L~~~~~k~~~~~~d~~~~k~~~~~~~~~KK~~k~i~~l~~L~~~ 103 (240)
T 2qyf_B 29 PVSQEGCCQFTCEL----LKHIMYQRQQLPLP-YEQLKHFYRKPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSH 103 (240)
T ss_dssp CC-CHHHHHHHHHH----HHHHHHHTTSSSSC-HHHHTC---------------------------CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----HHHHHEECCCCCCH-HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 15278899999999----99871436557826-99999998630466205565554300110157999999999999999
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCEEEEEEE
Q ss_conf 999998397447999997799932457999633215889988956899999999999995321278--999980477999
Q 028781 69 LLLFIQKGLVERVAVIFSNANNVPLERYVFKIMVNQSYGSMVEEGHLEFSLRSFLIKLSVSKSLSK--VLPQGCRWEITA 146 (204)
Q Consensus 69 v~~~L~~g~l~ki~lvI~~~~~~~lEr~~Fdi~~~~~~~~~~~~~~ie~~~ra~l~~l~~~~~~Lp--~lp~~~tF~i~v 146 (204)
+...+....+.++.+++=+.-=.|-|-|.++|........+.... -..=+|-++|+|..+..+-. ..+..-+|=+.
T Consensus 104 L~~~f~~~~v~~V~illGsS~~sPKE~Y~i~~~~~~~~~~~~~ls-~~~~lRkl~RaLi~~d~~s~~~~~~lt~tfvlv- 181 (240)
T 2qyf_B 104 LEDFFARTLVPRVLILLGGNALSPKEFYELDLSLLAPYSVDQSLS-TAACLRRLFRAIFMADAFSELQAPPLMGTVVMA- 181 (240)
T ss_dssp HHHHHHHSCCCEEEEEESSCSSSCSEEEEEECTTSCC---CCCSC-HHHHHHHHHHHHHHTTTTCCCSCCCCCEEEEEE-
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE-
T ss_conf 999984589767999965887786558999766556765323456-678999999999816876323568870279999-
Q ss_pred EEEECCCCCCCCCCCCCEECCC
Q ss_conf 9720888888878899222695
Q 028781 147 YFCSLPQVNTSKDAELWIPTDT 168 (204)
Q Consensus 147 ~~~~~~~~~~~~~~~~Wi~ad~ 168 (204)
+. +.+ ..+..|+|-..
T Consensus 182 --k~--~~~--~~~~~F~PK~~ 197 (240)
T 2qyf_B 182 --QG--HRN--CGEDWFRPKLN 197 (240)
T ss_dssp --EE--ETT--SCCSSSEEETT
T ss_pred --EC--CCC--CCCCCCCCCCC
T ss_conf --66--888--87767557545
No 5
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=1.00 E-value=1 Score=19.39 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CEEEECCCEEEECCCHH------HHHHHHHHH
Q ss_conf 8895878999999999998776432699999641-00332030122116966------999999999
Q 028781 7 QSPQVETARILAEFLEVAITSVVFLKGLYPSGAF-ERRRYMNLVVQRARHPQ------LRDYIHSSV 66 (204)
Q Consensus 7 ~~~~~~s~~~i~efLevaih~ILY~R~vYP~~~F-~~~k~y~~~v~~sr~p~------l~~YI~~~l 66 (204)
+.+.++....+.+++..-+-+|.+-||.=|++.+ +..+.+|+|++.|..+. |..|+++.+
T Consensus 66 ~L~~~~r~~~~~~l~~~~iP~IIvtrg~~pp~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~l 132 (312)
T 1knx_A 66 QKTLVEQQQILHNLLKLNPPAIILTKSFTDPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQF 132 (312)
T ss_dssp TSCHHHHTTTHHHHHTTCCSCEEEETTTCCCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHT
T ss_pred HCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 6697999999999847899889997989999999999987598799968628999999999999975
No 6
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=1.00 E-value=1 Score=14.96 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9587899999999999877643269999-964100332030122116966999999999999999983
Q 028781 9 PQVETARILAEFLEVAITSVVFLKGLYP-SGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQK 75 (204)
Q Consensus 9 ~~~~s~~~i~efLevaih~ILY~R~vYP-~~~F~~~k~y~~~v~~sr~p~l~~YI~~~l~~v~~~L~~ 75 (204)
+.+.....+..|+...+-.|.+-|+.=| ++..+..+.+|+|++.+..+.- ..+..+..||..
T Consensus 65 ~~e~~~~rler~l~~~~P~IIltrg~~~peelie~A~~~~IPVL~T~~~ts-----~~~~~l~~~l~~ 127 (314)
T 1ko7_A 65 PDEERKGRMRKLCRPETPAIIVTRDLEPPEELIEAAKEHETPLITSKIATT-----QLMSRLTTFLEH 127 (314)
T ss_dssp CHHHHTTHHHHHCCTTCCCEEECTTCCCCHHHHHHHHHTTCCEEECCSCHH-----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHH-----HHHHHHHHHHHH
T ss_conf 988899999998667997899959998999999999877974999777546-----899999999987
No 7
>1ttw_A Secretion chaperone; chaperone, type III secretion; 2.38A {Yersinia pestis} SCOP: d.198.1.1
Probab=1.00 E-value=1 Score=13.22 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=26.4
Q ss_pred HHCCCCCCCCCCCEEE---ECCCEEEECCCHH-------HHHHHHHHHHHHHHHHHCC
Q ss_conf 4326999996410033---2030122116966-------9999999999999999839
Q 028781 29 VFLKGLYPSGAFERRR---YMNLVVQRARHPQ-------LRDYIHSSVSSLLLFIQKG 76 (204)
Q Consensus 29 LY~R~vYP~~~F~~~k---~y~~~v~~sr~p~-------l~~YI~~~l~~v~~~L~~g 76 (204)
|+..++|.++.|+++- .-+.+|.+||+|- +-.-+...+....+|+..-
T Consensus 66 LL~qNLFSqd~~kP~~~ls~d~~~VLWsrqpl~~ld~~ql~~qLe~Lv~~A~~l~~~~ 123 (138)
T 1ttw_A 66 ILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEP 123 (138)
T ss_dssp HHHTCCCCSSTTCCEEEECTTSEEEEEEEEESSSCCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHCCCCCCCCCCEEEECCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9986113557677314238888875651485012037789999999999888872173
No 8
>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23
Probab=1.00 E-value=1 Score=12.84 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=37.9
Q ss_pred CCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEECCCCCEEEEEEE
Q ss_conf 699999641003320301221169669999999999999999839744--7999997799932457999
Q 028781 32 KGLYPSGAFERRRYMNLVVQRARHPQLRDYIHSSVSSLLLFIQKGLVE--RVAVIFSNANNVPLERYVF 98 (204)
Q Consensus 32 R~vYP~~~F~~~k~y~~~v~~sr~p~l~~YI~~~l~~v~~~L~~g~l~--ki~lvI~~~~~~~lEr~~F 98 (204)
...||....+-+ .+...+.|++..+|.+=....-+-|.-.++. .-.|++++.+++++|+--+
T Consensus 17 ~k~Ya~A~LEvC-----~CKL~~yPeVk~FI~~d~~~~fpnL~vkyv~Ga~P~LvLlD~~Ge~~E~I~I 80 (126)
T 2a4h_A 17 QRTYAKAILEVC-----TCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDASGKVQETLSI 80 (126)
T ss_dssp SCCCSCBEEECC-----SCTTTTCTTHHHHHHHTTGGGCTTBCCCCCSSCCCEEEECCSSSCCSEEEEC
T ss_pred HCCCCCEEEEEC-----CHHHHCCHHHHHHHCCCHHHHCCCEEEEEECCCCCEEEEECCCCCEEEEECC
T ss_conf 055573599974-----3034308878998715446647853799846999889985699988447643
No 9
>4g4s_P Proteasome assembly chaperone 2; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=12.68 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=32.3
Q ss_pred CCCEEEECCCHHHH-HHHHHHHHH-HHHHHHCCCCCEEEEEEECC
Q ss_conf 03012211696699-999999999-99999839744799999779
Q 028781 46 MNLVVQRARHPQLR-DYIHSSVSS-LLLFIQKGLVERVAVIFSNA 88 (204)
Q Consensus 46 y~~~v~~sr~p~l~-~YI~~~l~~-v~~~L~~g~l~ki~lvI~~~ 88 (204)
.++.|-|-|.|-+. .|..+.... +.+|+.....+++++.=...
T Consensus 80 ~~l~viQqRSPii~~~~~~~~f~e~L~~~i~~~~f~~VivLsS~~ 124 (269)
T 4g4s_P 80 RGLFAIQQRTPLVSVNYLNNFIVEIILPFLSKYNISEICIWDSLY 124 (269)
T ss_dssp TTEEEEEECSCBSCGGGHHHHHHHHHHHHHHGGGCSEEEEECCBC
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 878999972453455245699999999999975987799981576
No 10
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=1.00 E-value=1 Score=12.29 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=5.4
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 877643269999964
Q 028781 25 ITSVVFLKGLYPSGA 39 (204)
Q Consensus 25 ih~ILY~R~vYP~~~ 39 (204)
+..|+.-||..|++.
T Consensus 75 ~~~iIlt~g~~~~~~ 89 (139)
T 2ioj_A 75 VRCLILTGNLEPVQL 89 (139)
T ss_dssp EEEEEEETTCCCCHH
T ss_pred CCEEEECCCCCCCHH
T ss_conf 868998599998999
Done!