Query 028782
Match_columns 204
No_of_seqs 166 out of 497
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 100.0 1.1E-36 3.8E-41 234.5 9.2 97 71-203 2-102 (102)
2 3mce_A Nascent polypeptide-ass 99.9 4E-23 1.4E-27 146.0 4.1 57 70-126 5-61 (61)
3 3mcb_A Nascent polypeptide-ass 99.9 2E-22 6.8E-27 139.3 5.3 54 72-125 1-54 (54)
4 3mcb_B Transcription factor BT 99.3 2.8E-12 9.5E-17 89.6 6.7 48 79-126 2-49 (58)
5 3lkx_A Transcription factor BT 99.3 5.4E-12 1.8E-16 90.2 6.9 48 79-126 2-49 (66)
6 1wj7_A Hypothetical protein (R 98.5 7.4E-08 2.5E-12 74.3 3.8 36 167-202 40-75 (104)
7 2cp9_A EF-TS, EF-TSMT, elongat 98.2 1.8E-06 6.2E-11 61.2 4.7 40 163-202 6-45 (64)
8 1z96_A DNA-damage, UBA-domain 97.0 0.00062 2.1E-08 42.3 3.8 35 167-202 5-39 (40)
9 2g3q_A Protein YBL047C; endocy 94.9 0.013 4.6E-07 37.1 2.2 33 167-200 5-37 (43)
10 1wji_A Tudor domain containing 94.5 0.037 1.3E-06 38.4 3.9 35 165-200 8-42 (63)
11 2dak_A Ubiquitin carboxyl-term 93.9 0.054 1.8E-06 37.2 3.7 35 165-200 8-42 (63)
12 1wgn_A UBAP1, ubiquitin associ 93.7 0.043 1.5E-06 38.6 2.9 32 167-199 20-51 (63)
13 1wiv_A UBP14, ubiquitin-specif 93.5 0.078 2.7E-06 37.7 4.1 36 164-200 27-62 (73)
14 2cpw_A CBL-interacting protein 93.2 0.12 4.1E-06 35.8 4.6 34 165-199 18-52 (64)
15 1whc_A RSGI RUH-027, UBA/UBX 3 93.2 0.11 3.8E-06 35.9 4.4 35 164-199 7-42 (64)
16 1vg5_A RSGI RUH-014, rhomboid 93.0 0.092 3.1E-06 37.6 3.8 35 166-201 29-63 (73)
17 1veg_A NEDD8 ultimate buster-1 92.9 0.11 3.8E-06 38.2 4.1 35 164-199 27-61 (83)
18 2dai_A Ubadc1, ubiquitin assoc 92.6 0.14 4.6E-06 37.4 4.3 35 164-199 27-61 (83)
19 2d9s_A CBL E3 ubiquitin protei 92.4 0.17 5.7E-06 34.5 4.2 29 169-198 12-40 (53)
20 2ekk_A UBA domain from E3 ubiq 92.2 0.14 4.8E-06 33.0 3.6 34 164-199 7-40 (47)
21 1ify_A HHR23A, UV excision rep 92.1 0.1 3.4E-06 34.3 2.8 32 168-200 10-41 (49)
22 2jy5_A Ubiquilin-1; UBA, alter 92.1 0.16 5.5E-06 33.7 3.8 35 167-202 13-48 (52)
23 2knz_A Ubiquilin-4; cytoplasm, 91.9 0.16 5.4E-06 33.8 3.6 33 169-202 14-47 (53)
24 2dag_A Ubiquitin carboxyl-term 91.3 0.2 6.8E-06 35.6 3.8 35 164-199 7-42 (74)
25 2crn_A Ubash3A protein; compac 91.3 0.33 1.1E-05 33.6 4.8 35 164-199 7-42 (64)
26 2bwb_A Ubiquitin-like protein 91.2 0.24 8.2E-06 32.2 3.8 33 169-202 10-43 (46)
27 2ooa_A E3 ubiquitin-protein li 90.5 0.22 7.4E-06 33.8 3.2 30 168-198 13-42 (52)
28 2dah_A Ubiquilin-3; UBA domain 90.3 0.21 7E-06 33.6 3.0 34 168-202 11-45 (54)
29 1wr1_B Ubiquitin-like protein 89.5 0.36 1.2E-05 32.9 3.7 33 169-202 20-53 (58)
30 1v92_A NSFL1 cofactor P47; 3-h 89.4 0.4 1.4E-05 30.2 3.7 32 169-200 8-39 (46)
31 2lbc_A Ubiquitin carboxyl-term 88.5 0.44 1.5E-05 36.4 4.0 37 165-202 77-113 (126)
32 2dkl_A Trinucleotide repeat co 87.2 0.7 2.4E-05 33.7 4.3 33 166-199 21-53 (85)
33 1vej_A Riken cDNA 4931431F19; 86.0 0.82 2.8E-05 32.7 3.9 35 167-202 30-65 (74)
34 1vek_A UBP14, ubiquitin-specif 85.9 0.88 3E-05 33.0 4.2 36 163-199 26-62 (84)
35 2dal_A Protein KIAA0794; FAS a 85.4 1 3.5E-05 30.7 4.1 34 168-201 17-50 (62)
36 2oo9_A E3 ubiquitin-protein li 83.6 1.3 4.6E-05 29.2 3.8 29 169-198 7-35 (46)
37 2dna_A Unnamed protein product 83.5 0.89 3.1E-05 32.1 3.2 33 169-202 22-55 (67)
38 4ae4_A Ubiquitin-associated pr 83.4 1.1 3.6E-05 34.6 3.8 24 177-200 86-109 (118)
39 2dzl_A Protein FAM100B; UBA-li 82.6 1.5 5.3E-05 30.4 4.1 33 169-201 20-52 (66)
40 1otr_A Protein CUE2; protein-p 82.5 1.1 3.8E-05 29.7 3.2 36 167-202 5-41 (49)
41 2cp8_A NEXT to BRCA1 gene 1 pr 79.7 1.2 4E-05 30.3 2.5 26 177-202 19-45 (54)
42 2cwb_A Chimera of immunoglobul 77.3 2.1 7.1E-05 32.7 3.6 29 174-202 73-102 (108)
43 1dv0_A DNA repair protein HHR2 77.1 1.7 5.8E-05 28.1 2.6 30 169-199 7-36 (47)
44 2dam_A ETEA protein; KIAA0887, 73.8 4.2 0.00014 28.1 4.1 33 169-201 21-54 (67)
45 2juj_A E3 ubiquitin-protein li 71.9 2.5 8.4E-05 29.0 2.5 31 167-198 8-38 (56)
46 3e21_A HFAF1, FAS-associated f 71.6 4.6 0.00016 26.2 3.6 33 169-201 8-41 (45)
47 1wgl_A TOLL-interacting protei 71.0 3.8 0.00013 27.9 3.3 38 165-202 8-46 (59)
48 1nri_A Hypothetical protein HI 68.5 1.4 4.8E-05 38.0 0.9 36 167-202 245-280 (306)
49 1eej_A Thiol:disulfide interch 65.9 12 0.0004 30.0 5.8 43 66-119 2-51 (216)
50 3k9o_A Ubiquitin-conjugating e 64.9 5.7 0.0002 32.4 3.8 33 169-202 166-198 (201)
51 4dbg_B Ring finger protein 31; 61.4 4.7 0.00016 33.0 2.6 36 168-203 104-139 (162)
52 4dbg_B Ring finger protein 31; 59.8 7.3 0.00025 31.8 3.5 24 178-201 74-97 (162)
53 3k6g_A Telomeric repeat-bindin 58.4 14 0.00047 28.3 4.6 36 167-202 14-49 (111)
54 2cos_A Serine/threonine protei 57.9 5.1 0.00018 27.2 1.9 23 176-198 18-40 (54)
55 4ae4_A Ubiquitin-associated pr 55.8 11 0.00039 28.7 3.8 26 175-201 16-41 (118)
56 1vdl_A Ubiquitin carboxyl-term 50.1 7.9 0.00027 28.1 2.0 19 185-203 44-62 (80)
57 3ihp_A Ubiquitin carboxyl-term 50.0 11 0.00039 37.2 3.7 36 164-200 718-753 (854)
58 2dhy_A CUE domain-containing p 43.9 20 0.00069 24.9 3.2 25 178-202 31-55 (67)
59 1oai_A Nuclear RNA export fact 39.6 45 0.0016 22.3 4.4 32 170-201 11-42 (59)
60 2fpn_A YWMB; structural genomo 38.2 16 0.00055 30.6 2.4 54 66-120 144-211 (216)
61 1oqy_A HHR23A, UV excision rep 36.2 16 0.00055 32.9 2.1 33 169-202 171-203 (368)
62 3e46_A Ubiquitin-conjugating e 33.3 38 0.0013 28.8 4.0 27 176-202 224-250 (253)
63 1nri_A Hypothetical protein HI 32.8 9.2 0.00031 32.8 0.0 30 170-199 275-304 (306)
64 2xvc_A ESCRT-III, SSO0910; cel 32.3 41 0.0014 23.1 3.2 22 169-190 27-48 (59)
65 3bny_A Aristolochene synthase; 30.1 30 0.001 29.0 2.7 25 167-191 242-266 (320)
66 2lva_A Ubiquitin carboxyl-term 36.2 11 0.00037 29.7 0.0 20 184-203 37-56 (129)
67 1di1_A Aristolochene synthase; 29.4 38 0.0013 27.9 3.2 25 167-191 228-252 (300)
68 1cw0_A Protein (DNA mismatch e 27.5 43 0.0015 26.7 3.1 35 58-92 16-56 (155)
69 1t3b_A Thiol:disulfide interch 26.8 29 0.00099 27.6 2.0 40 69-119 5-51 (211)
70 2jp7_A MRNA export factor MEX6 26.2 74 0.0025 21.2 3.7 32 170-201 10-41 (57)
71 1ps1_A Pentalenene synthase; a 24.6 51 0.0017 27.7 3.2 25 166-190 233-257 (337)
72 3tqn_A Transcriptional regulat 24.1 62 0.0021 23.3 3.2 22 169-190 35-56 (113)
73 4ham_A LMO2241 protein; struct 24.0 60 0.0021 24.0 3.2 21 170-190 41-61 (134)
74 1wj7_A Hypothetical protein (R 22.6 66 0.0023 24.3 3.1 32 163-194 50-81 (104)
75 2cpg_A REPA protein, transcrip 21.4 94 0.0032 18.4 3.2 21 169-189 16-37 (45)
76 2qsf_X RAD23, UV excision repa 21.3 94 0.0032 25.2 4.1 31 168-199 132-162 (171)
77 2k9i_A Plasmid PRN1, complete 21.3 91 0.0031 19.1 3.2 22 168-189 22-44 (55)
78 3neu_A LIN1836 protein; struct 20.6 78 0.0027 23.2 3.2 22 169-190 39-60 (125)
79 2b0l_A GTP-sensing transcripti 20.4 82 0.0028 22.6 3.2 22 169-190 45-66 (102)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=100.00 E-value=1.1e-36 Score=234.54 Aligned_cols=97 Identities=37% Similarity=0.563 Sum_probs=81.9
Q ss_pred HHHHHcCC--cccCCceEEEEEecCceEEEEcCCeEEe--eCCCcEEEEeccceecchhhHHHHHHHHHhcCCCCCcccC
Q 028782 71 KAMLKLGM--KPIPGVSRVTVKKSKNILFVISKPDVFK--SPTTDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSHVVS 146 (204)
Q Consensus 71 k~mkKLGl--k~v~gV~rVtI~k~~~~~fvI~~P~V~k--s~gs~tYvVfGeak~ed~~~q~q~~aae~~~~~~~~~~~~ 146 (204)
|||+|||| ++|+||+||+||+.+ .+|+|++|+||+ +||++||+|||+++.+++.
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~--------------------- 59 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE--------------------- 59 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeeccc---------------------
Confidence 68999999 799999999999998 899999999996 8999999999999988751
Q ss_pred CCCccccccCccccccCCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhc
Q 028782 147 KPESSAMAQDDEEVDETGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 147 ~~~~~~~~~~~eevd~~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt 203 (204)
+ ++||+++||+|||+|+||||++|++||++||||||+|||.||
T Consensus 60 -----------~---e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 60 -----------A---EMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp -----------E---ECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred -----------c---cCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 0 168999999999999999999999999999999999999996
No 2
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.87 E-value=4e-23 Score=145.96 Aligned_cols=57 Identities=65% Similarity=1.092 Sum_probs=50.8
Q ss_pred HHHHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhh
Q 028782 70 RKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 126 (204)
Q Consensus 70 rk~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~ 126 (204)
|++|+||||++|+||+||+|||++|++|+|++|+||++|+++||+|||+++++|+++
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q 61 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence 467999999999999999999999999999999999999999999999999999863
No 3
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.86 E-value=2e-22 Score=139.31 Aligned_cols=54 Identities=72% Similarity=1.188 Sum_probs=51.7
Q ss_pred HHHHcCCcccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchh
Q 028782 72 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLS 125 (204)
Q Consensus 72 ~mkKLGlk~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~ 125 (204)
+|+||||++|+||+||+|||++|.+|+|++|+||++|+++||+|||+++.+|++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~ 54 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence 489999999999999999999999999999999999999999999999999874
No 4
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.32 E-value=2.8e-12 Score=89.64 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=45.2
Q ss_pred cccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhh
Q 028782 79 KPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 126 (204)
Q Consensus 79 k~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~ 126 (204)
..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.++++++..
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e 49 (58)
T 3mcb_B 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (58)
T ss_dssp CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence 578999999999999999999999999999999999999999998754
No 5
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=99.29 E-value=5.4e-12 Score=90.25 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=44.2
Q ss_pred cccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccceecchhh
Q 028782 79 KPIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEAKIEDLSS 126 (204)
Q Consensus 79 k~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGeak~ed~~~ 126 (204)
..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.++++++..
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e 49 (66)
T 3lkx_A 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (66)
T ss_dssp EECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence 579999999999999999999999999999999999999999998754
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.48 E-value=7.4e-08 Score=74.26 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=34.7
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
+++|++||++||||+++|++||.++||||..||+.|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~L 75 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL 75 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 579999999999999999999999999999999987
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=98.18 E-value=1.8e-06 Score=61.19 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=37.9
Q ss_pred CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
..|+.++|+.+.++||++..++++||.++||||..||..|
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3688999999999999999999999999999999999887
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.03 E-value=0.00062 Score=42.30 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=30.5
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
++.|..+|+. |+||+.|++||+.++||+-.|+--|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578888887 9999999999999999998887544
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=94.89 E-value=0.013 Score=37.12 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=27.2
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 200 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM 200 (204)
++.|..+|+ .|.+|+.|++||+.++||+=.|+=
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~ 37 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLEAATN 37 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHH
Confidence 455777665 799999999999999999977653
No 10
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.49 E-value=0.037 Score=38.38 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782 165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 200 (204)
Q Consensus 165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM 200 (204)
++++.|..+|+ .|.+|+.|++||+.++||+=.|+=
T Consensus 8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e 42 (63)
T 1wji_A 8 VDEKALKHITE-MGFSKEASRQALMDNGNNLEAALN 42 (63)
T ss_dssp SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHH
Confidence 56777887775 799999999999999999876654
No 11
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.90 E-value=0.054 Score=37.19 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=28.8
Q ss_pred CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782 165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 200 (204)
Q Consensus 165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM 200 (204)
++++-|..+|+ .|.+|+.|++||+.++|++=.|+-
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e 42 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 42 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 56677877776 799999999999999999765653
No 12
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.70 E-value=0.043 Score=38.61 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=27.1
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
++.|+.|+ -.|.|+..|++|||.++|+|-.|.
T Consensus 20 ~e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa 51 (63)
T 1wgn_A 20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQIL 51 (63)
T ss_dssp HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 45677777 468999999999999999997774
No 13
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.54 E-value=0.078 Score=37.70 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=30.3
Q ss_pred CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782 164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 200 (204)
Q Consensus 164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM 200 (204)
.++++.|..+| ..|.+|..|++||+.++|++=.|+=
T Consensus 27 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave 62 (73)
T 1wiv_A 27 DIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATD 62 (73)
T ss_dssp SSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHH
Confidence 46777887777 4799999999999999999977764
No 14
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.24 E-value=0.12 Score=35.80 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=28.2
Q ss_pred CCcccHHHHHHhhCCCHHHHHHHHHHcCC-cHHHHH
Q 028782 165 VEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI 199 (204)
Q Consensus 165 v~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AI 199 (204)
++++.|..+|+ .|.+|..|++||+.++| ++=.|+
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 52 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC 52 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHH
Confidence 45667877776 89999999999999998 886665
No 15
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.20 E-value=0.11 Score=35.88 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=29.4
Q ss_pred CCCcccHHHHHHhhCCCHHHHHHHHHHc-CCcHHHHH
Q 028782 164 GVEPKDIELVMTQAGVSRAKAVKALKAA-DGDIVSAI 199 (204)
Q Consensus 164 gv~eeDIeLVm~QagvSr~kAvkALke~-~GDIV~AI 199 (204)
.++++-|..+|+ .|.+|..|++||+.+ +|++=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 42 (64)
T 1whc_A 7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAM 42 (64)
T ss_dssp CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHH
Confidence 467788888775 899999999999999 79986664
No 16
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.98 E-value=0.092 Score=37.61 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=29.5
Q ss_pred CcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782 166 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 166 ~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~ 201 (204)
.++.|..+|+ .|.+|+.|++||+.++||+=.|+=-
T Consensus 29 ~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~ 63 (73)
T 1vg5_A 29 SEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEI 63 (73)
T ss_dssp CHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHH
T ss_pred cHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 4667888876 7999999999999999999777643
No 17
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.86 E-value=0.11 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782 164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
.++++-|..+|. .|.+|..|++||+.++||+=.|+
T Consensus 27 ~~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~ 61 (83)
T 1veg_A 27 SPSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAA 61 (83)
T ss_dssp CCCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 346778888875 69999999999999999986665
No 18
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.60 E-value=0.14 Score=37.43 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782 164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
.++++-|..+|+ .|.+|..|++||+.++|++=.|+
T Consensus 27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ 61 (83)
T 2dai_A 27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAM 61 (83)
T ss_dssp SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence 467788888876 89999999999999999986665
No 19
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.44 E-value=0.17 Score=34.52 Aligned_cols=29 Identities=41% Similarity=0.437 Sum_probs=24.9
Q ss_pred cHHHHHHhhCCCHHHHHHHHHHcCCcHHHH
Q 028782 169 DIELVMTQAGVSRAKAVKALKAADGDIVSA 198 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke~~GDIV~A 198 (204)
-|+..|++ |.||+.|++||.-++|||--|
T Consensus 12 ~I~~L~~l-GF~r~~ai~AL~~a~nnve~A 40 (53)
T 2d9s_A 12 EIERLMSQ-GYSYQDIQKALVIAHNNIEMA 40 (53)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHhcCCHHHH
Confidence 48888864 999999999999999999544
No 20
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.22 E-value=0.14 Score=32.98 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=28.0
Q ss_pred CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782 164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
.++++.|..+|+ .|.+|+.|++||+.+ |++=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~ 40 (47)
T 2ekk_A 7 GVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQAT 40 (47)
T ss_dssp SSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHH
Confidence 567788888877 899999999999999 4765554
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.11 E-value=0.1 Score=34.26 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=25.5
Q ss_pred ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782 168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 200 (204)
Q Consensus 168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AIM 200 (204)
+.|..+| ..|.+|+.|++||+.++||+=.|+=
T Consensus 10 ~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~e 41 (49)
T 1ify_A 10 TMLTEIM-SMGYERERVVAALRASYNNPHRAVE 41 (49)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHH
Confidence 4455554 4699999999999999999877753
No 22
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.08 E-value=0.16 Score=33.71 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=28.5
Q ss_pred cccHHHHHHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782 167 PKDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~Qagv-Sr~kAvkALke~~GDIV~AIM~L 202 (204)
+..|..+++ .|. +|..+++||+.++||+=.||--|
T Consensus 13 ~~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 13 QQQLEQLSA-MGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 446666664 689 99999999999999998887654
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=91.87 E-value=0.16 Score=33.80 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=26.5
Q ss_pred cHHHHHHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782 169 DIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 169 DIeLVm~Qagv-Sr~kAvkALke~~GDIV~AIM~L 202 (204)
.|..++ ..|. +|..|++||+.++||+=.||--|
T Consensus 14 ~l~~L~-~MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 14 QLEQLN-SMGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 455555 4588 99999999999999998887544
No 24
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.31 E-value=0.2 Score=35.64 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=28.0
Q ss_pred CCCcccHHHHHHhhCCCHHHHHHHHHHcCC-cHHHHH
Q 028782 164 GVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI 199 (204)
Q Consensus 164 gv~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AI 199 (204)
.++++-|..+|+ .|.+|..|++||+.++| ++=.|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ 42 (74)
T 2dag_A 7 GLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAM 42 (74)
T ss_dssp SSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 356667777776 89999999999999997 776554
No 25
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.30 E-value=0.33 Score=33.64 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHhhCCCHHHHHHHHHHcCC-cHHHHH
Q 028782 164 GVEPKDIELVMTQAGVSRAKAVKALKAADG-DIVSAI 199 (204)
Q Consensus 164 gv~eeDIeLVm~QagvSr~kAvkALke~~G-DIV~AI 199 (204)
..+++.|.-+++ .|.+|+.|++||+.++| ++=.|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~ 42 (64)
T 2crn_A 7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL 42 (64)
T ss_dssp CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 356778888777 89999999999999987 776554
No 26
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.15 E-value=0.24 Score=32.18 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=25.2
Q ss_pred cHHHHHHhhCCC-HHHHHHHHHHcCCcHHHHHhhh
Q 028782 169 DIELVMTQAGVS-RAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 169 DIeLVm~QagvS-r~kAvkALke~~GDIV~AIM~L 202 (204)
-|.-++ ..|.+ |..+++||+.++||+=.||--|
T Consensus 10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 344444 46875 7888999999999998888655
No 27
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=90.50 E-value=0.22 Score=33.83 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.3
Q ss_pred ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHH
Q 028782 168 KDIELVMTQAGVSRAKAVKALKAADGDIVSA 198 (204)
Q Consensus 168 eDIeLVm~QagvSr~kAvkALke~~GDIV~A 198 (204)
+-|+-.|+ .|.||+.|++||+-++|||--|
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A 42 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA 42 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence 56777776 4999999999999999998443
No 28
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.32 E-value=0.21 Score=33.60 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=25.5
Q ss_pred ccHHHHHHhhCCCHHH-HHHHHHHcCCcHHHHHhhh
Q 028782 168 KDIELVMTQAGVSRAK-AVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 168 eDIeLVm~QagvSr~k-AvkALke~~GDIV~AIM~L 202 (204)
+-|..++ ..|.++.. +++||+.++|||=.||--|
T Consensus 11 ~~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 11 VQLEQLR-SMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455544 55997765 6999999999998887655
No 29
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=89.52 E-value=0.36 Score=32.94 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=25.7
Q ss_pred cHHHHHHhhCCC-HHHHHHHHHHcCCcHHHHHhhh
Q 028782 169 DIELVMTQAGVS-RAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 169 DIeLVm~QagvS-r~kAvkALke~~GDIV~AIM~L 202 (204)
-|..++ ..|.+ |..+++||+.++|||=.||--|
T Consensus 20 qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 20 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 455544 45875 8888999999999998887655
No 30
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=89.42 E-value=0.4 Score=30.20 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=28.6
Q ss_pred cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIM 200 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke~~GDIV~AIM 200 (204)
-|.-.++-|||++..|+..|..+++|+-.||-
T Consensus 8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~ 39 (46)
T 1v92_A 8 ALREFVAVTGAEEDRARFFLESAGWDLQIALA 39 (46)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence 46777888999999999999999999988874
No 31
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=88.48 E-value=0.44 Score=36.42 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=30.4
Q ss_pred CCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 165 VEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 165 v~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
++++-|.-+|+ .|++|..|++||+.++||+-.|+=-|
T Consensus 77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L 113 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWI 113 (126)
T ss_dssp CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56667877776 79999999999999999997776433
No 32
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.22 E-value=0.7 Score=33.75 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=27.1
Q ss_pred CcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782 166 EPKDIELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 166 ~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
+++-|..+++ .|.+|..|++||+.++|++=.|+
T Consensus 21 n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ 53 (85)
T 2dkl_A 21 MSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAM 53 (85)
T ss_dssp HHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 3455666665 79999999999999999997776
No 33
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.96 E-value=0.82 Score=32.75 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=27.2
Q ss_pred cccHHHHHHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782 167 PKDIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~Qagv-Sr~kAvkALke~~GDIV~AIM~L 202 (204)
++-|..++ ..|. .|..+++||+.++|||=.||=-|
T Consensus 30 e~qi~qL~-eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 30 QQELEELK-ALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 34566665 4587 58999999999999998887554
No 34
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=85.92 E-value=0.88 Score=33.03 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=29.1
Q ss_pred CCCCcccHHHHHHhhCCCHHHHHHHHHHcC-CcHHHHH
Q 028782 163 TGVEPKDIELVMTQAGVSRAKAVKALKAAD-GDIVSAI 199 (204)
Q Consensus 163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~-GDIV~AI 199 (204)
..++++-|..+|+ .|.+|..|++||+.++ |++=.|+
T Consensus 26 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ 62 (84)
T 1vek_A 26 PVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAM 62 (84)
T ss_dssp CCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHH
Confidence 3466778888876 8999999999999985 6886664
No 35
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.39 E-value=1 Score=30.71 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=30.2
Q ss_pred ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782 168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~ 201 (204)
+-|.-.|.-|||++..|+..|..+++|+-.||-.
T Consensus 17 e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ 50 (62)
T 2dal_A 17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTM 50 (62)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4588888999999999999999999999998853
No 36
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=83.58 E-value=1.3 Score=29.20 Aligned_cols=29 Identities=41% Similarity=0.433 Sum_probs=24.4
Q ss_pred cHHHHHHhhCCCHHHHHHHHHHcCCcHHHH
Q 028782 169 DIELVMTQAGVSRAKAVKALKAADGDIVSA 198 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke~~GDIV~A 198 (204)
-|...|++ |.||+.|++||--+++||--|
T Consensus 7 ~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A 35 (46)
T 2oo9_A 7 EIENLMSQ-GYSYQDIQKALVIAQNNIEMA 35 (46)
T ss_dssp HHHHHHHT-TBCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHhhccHHHH
Confidence 46666664 999999999999999999665
No 37
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=83.54 E-value=0.89 Score=32.07 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=23.6
Q ss_pred cHHHHHHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782 169 DIELVMTQAGV-SRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 169 DIeLVm~Qagv-Sr~kAvkALke~~GDIV~AIM~L 202 (204)
-|..++ ..|. .|...++||+.++|||-.||=-|
T Consensus 22 ql~qL~-~MGF~d~~an~~AL~at~Gnve~Ave~L 55 (67)
T 2dna_A 22 EMECLQ-AMGFVNYNANLQALIATDGDTNAAIYKL 55 (67)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444 3575 55566999999999998887554
No 38
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=83.36 E-value=1.1 Score=34.56 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.8
Q ss_pred hCCCHHHHHHHHHHcCCcHHHHHh
Q 028782 177 AGVSRAKAVKALKAADGDIVSAIM 200 (204)
Q Consensus 177 agvSr~kAvkALke~~GDIV~AIM 200 (204)
.|.++..|++||+.|+||+=.|+=
T Consensus 86 MGF~~~~a~~AL~~~~nd~erAle 109 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNNDQDNALE 109 (118)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 599999999999999999988863
No 39
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.61 E-value=1.5 Score=30.36 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=29.6
Q ss_pred cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke~~GDIV~AIM~ 201 (204)
-|.-.|.-|||++..|+..|..+++|+-.||-.
T Consensus 20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ 52 (66)
T 2dzl_A 20 MINQFVLAAGCAADQAKQLLQAAHWQFETALST 52 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 488888999999999999999999999888753
No 40
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=82.54 E-value=1.1 Score=29.66 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=30.4
Q ss_pred cccHHHHHHhh-CCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 167 PKDIELVMTQA-GVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~Qa-gvSr~kAvkALke~~GDIV~AIM~L 202 (204)
+++|.+.++=. +|++..++.+|+.++||+=.||-.|
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46788888775 9999999999999999998877544
No 41
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.71 E-value=1.2 Score=30.31 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.3
Q ss_pred hCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782 177 AGV-SRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 177 agv-Sr~kAvkALke~~GDIV~AIM~L 202 (204)
.|. .+..-++||+.++|+|=.||..|
T Consensus 19 MGF~D~~~N~~aL~~~~gnv~~aI~~L 45 (54)
T 2cp8_A 19 MGFCDRQLNLRLLKKHNYNILQVVTEL 45 (54)
T ss_dssp HTCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 355 99999999999999999999887
No 42
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=77.32 E-value=2.1 Score=32.72 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=23.4
Q ss_pred HHhhCC-CHHHHHHHHHHcCCcHHHHHhhh
Q 028782 174 MTQAGV-SRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 174 m~Qagv-Sr~kAvkALke~~GDIV~AIM~L 202 (204)
+...|. .|..+++||+.++|||=.||=.|
T Consensus 73 L~eMGF~d~~~ni~AL~~t~Gdve~AVe~L 102 (108)
T 2cwb_A 73 LRDMGIQDDELSLRALQATGGDIQAALELI 102 (108)
T ss_dssp HHTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 344687 56899999999999998887555
No 43
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=77.07 E-value=1.7 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=23.7
Q ss_pred cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
-|+.++ ..|.+|..|++||..+++|+=.|.
T Consensus 7 aI~rL~-~mGF~~~~a~~Al~a~~~n~e~A~ 36 (47)
T 1dv0_A 7 AIERLK-ALGFPESLVIQAYFACEKNENLAA 36 (47)
T ss_dssp HHTTTT-TTTCCHHHHHHHHTTTTSCHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 344444 459999999999999999986664
No 44
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.81 E-value=4.2 Score=28.12 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=28.9
Q ss_pred cHHHHHHhhC-CCHHHHHHHHHHcCCcHHHHHhh
Q 028782 169 DIELVMTQAG-VSRAKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 169 DIeLVm~Qag-vSr~kAvkALke~~GDIV~AIM~ 201 (204)
-|.--|.-|| ++...|+..|..+++||-.||-.
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ 54 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 54 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4777788899 99999999999999999888753
No 45
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=71.92 E-value=2.5 Score=28.99 Aligned_cols=31 Identities=39% Similarity=0.411 Sum_probs=25.5
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHH
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSA 198 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~A 198 (204)
+.-|...|++ |.||+.|++||.-++|||--|
T Consensus 8 e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~A 38 (56)
T 2juj_A 8 SSEIENLMSQ-GYSYQDIQKALVIAQNNIEMA 38 (56)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCSHHH
T ss_pred hHHHHHHHHc-CCCHHHHHHHHHHhcccHHHH
Confidence 3467777764 999999999999999998544
No 46
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=71.56 E-value=4.6 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=27.3
Q ss_pred cHHHHHHhhCCCH-HHHHHHHHHcCCcHHHHHhh
Q 028782 169 DIELVMTQAGVSR-AKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 169 DIeLVm~QagvSr-~kAvkALke~~GDIV~AIM~ 201 (204)
-|.--.+=||++- ++|+.-|..||.||-.|+-.
T Consensus 8 ~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 8 ILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3444556789995 99999999999999999864
No 47
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=70.97 E-value=3.8 Score=27.87 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCcccHHHHHHhh-CCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 165 VEPKDIELVMTQA-GVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 165 v~eeDIeLVm~Qa-gvSr~kAvkALke~~GDIV~AIM~L 202 (204)
+.+++|....+-. ++++...+.+|++++||+=.||=.|
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~L 46 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSL 46 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5677888877766 9999999999999999997777554
No 48
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=68.49 E-value=1.4 Score=37.95 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=11.9
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
..-...|+..+|||++.|.++|+.++|.+=-||+-+
T Consensus 245 ~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 280 (306)
T 1nri_A 245 ARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMI 280 (306)
T ss_dssp HHHHHHHHHHSCCCC---------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHH
Confidence 344778899999999999999999999988887643
No 49
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=65.86 E-value=12 Score=29.95 Aligned_cols=43 Identities=19% Similarity=0.432 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCc-------ccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccc
Q 028782 66 EKKSRKAMLKLGMK-------PIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119 (204)
Q Consensus 66 eKK~rk~mkKLGlk-------~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGea 119 (204)
+..+++.|+++|++ +++|+-+|++ +.+ -+|-.+.. .|+|+|..
T Consensus 2 ~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~--~~~--------~~y~~~dg-~~~i~G~l 51 (216)
T 1eej_A 2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSG--------VLYITDDG-KHIIQGPM 51 (216)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTE--------EEEEETTS-CEEEESCE
T ss_pred hHHHHHHHHHcCCceeeeecCCCCCcEEEEE--CCe--------EEEEcCCC-CEEEEeee
Confidence 45678888888886 5778777666 222 23444443 48888874
No 50
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=64.91 E-value=5.7 Score=32.39 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=25.7
Q ss_pred cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
-|+..+ ..|.+|.+|+.||..+++|+-.|+=.|
T Consensus 166 kV~~l~-~MGf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 166 KIENLC-AMGFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344443 349999999999999999998886443
No 51
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=61.38 E-value=4.7 Score=32.98 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=30.0
Q ss_pred ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhhc
Q 028782 168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~Lt 203 (204)
.-+..+|+--...|+..++||..|.||+--||.+|+
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 456778888888889999999999999888888874
No 52
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=59.81 E-value=7.3 Score=31.83 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHhh
Q 028782 178 GVSRAKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 178 gvSr~kAvkALke~~GDIV~AIM~ 201 (204)
++|.++|++||..++||+=.|+-.
T Consensus 74 ~~s~~EAr~Aw~~~~Gd~~~Av~~ 97 (162)
T 4dbg_B 74 AFSCQEARRAWLDRHGNLDEAVEE 97 (162)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred cccHHHHHHHHHHccCChHHHHHH
Confidence 479999999999999999888754
No 53
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=58.41 E-value=14 Score=28.34 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=31.1
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
.+=|.-.|++++..--..-+||.+|+||+-.|-.-|
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL 49 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFL 49 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHH
Confidence 466888999999999999999999999998875433
No 54
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.86 E-value=5.1 Score=27.21 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=18.6
Q ss_pred hhCCCHHHHHHHHHHcCCcHHHH
Q 028782 176 QAGVSRAKAVKALKAADGDIVSA 198 (204)
Q Consensus 176 QagvSr~kAvkALke~~GDIV~A 198 (204)
..||+++.|.+||+.++|-=+++
T Consensus 18 eMGFd~erae~Alk~Tg~~Gle~ 40 (54)
T 2cos_A 18 NAGCDQEMAGRALKQTGSRSIEA 40 (54)
T ss_dssp HHHCCHHHHHHHHHHHTSCCHHH
T ss_pred HcCCCHHHHHHHHHHhCcccHHH
Confidence 47999999999999998843333
No 55
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=55.85 E-value=11 Score=28.70 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=20.5
Q ss_pred HhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782 175 TQAGVSRAKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 175 ~QagvSr~kAvkALke~~GDIV~AIM~ 201 (204)
...|.++..++|||+.+++| ++++|+
T Consensus 16 ~~MGFp~~~~~kAl~~~g~~-~e~ame 41 (118)
T 4ae4_A 16 VNMGYSYECVLRAMKAAGAN-IEQILD 41 (118)
T ss_dssp HHTTCCHHHHHHHHHHHCSC-HHHHHH
T ss_pred HHcCCCHHHHHHHHHHHCcC-HHHHHH
Confidence 34599999999999999986 555543
No 56
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.12 E-value=7.9 Score=28.10 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.5
Q ss_pred HHHHHHcCCcHHHHHhhhc
Q 028782 185 VKALKAADGDIVSAIMELT 203 (204)
Q Consensus 185 vkALke~~GDIV~AIM~Lt 203 (204)
-.||+..+|||..|+--||
T Consensus 44 ~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 44 QQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHh
Confidence 3599999999999998776
No 57
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=49.96 E-value=11 Score=37.20 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=29.8
Q ss_pred CCCcccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHh
Q 028782 164 GVEPKDIELVMTQAGVSRAKAVKALKAADGDIVSAIM 200 (204)
Q Consensus 164 gv~eeDIeLVm~QagvSr~kAvkALke~~GDIV~AIM 200 (204)
.++++.|..+.. .|.++..|++||+.++||+-.||=
T Consensus 718 ~~~~e~i~~l~~-mGf~~~~a~~aL~~t~~~~eraid 753 (854)
T 3ihp_A 718 PPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 753 (854)
T ss_dssp -CCHHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHH
Confidence 356777877654 799999999999999999988873
No 58
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.85 E-value=20 Score=24.90 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 178 GVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 178 gvSr~kAvkALke~~GDIV~AIM~L 202 (204)
.+++.-....|+.++|++-.||=.|
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6777777777888888876666443
No 59
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=39.60 E-value=45 Score=22.33 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782 170 IELVMTQAGVSRAKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 170 IeLVm~QagvSr~kAvkALke~~GDIV~AIM~ 201 (204)
|..++.|+|...+=+.+.|..++-|.=.|+-.
T Consensus 11 v~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 11 LQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 66788999999999999999999999888754
No 60
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=38.19 E-value=16 Score=30.63 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCcccCCceEEEEEe-----c--CceEEEEcCCeE-------EeeCCCcEEEEeccce
Q 028782 66 EKKSRKAMLKLGMKPIPGVSRVTVKK-----S--KNILFVISKPDV-------FKSPTTDTYVIFGEAK 120 (204)
Q Consensus 66 eKK~rk~mkKLGlk~v~gV~rVtI~k-----~--~~~~fvI~~P~V-------~ks~gs~tYvVfGeak 120 (204)
.++++++|++|+.++|+++...++.. + ++ .+.+.+-.+ |...+..||+..|.|=
T Consensus 144 ~~~~~~~l~~l~A~~vE~~~e~~~vSiSaYs~~~~~-~i~~~~~k~NlqvAlR~~~~~~kT~I~iGTPI 211 (216)
T 2fpn_A 144 QKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEE-YIMTSKHKMNLQIALRSAGMGGKHTVTVGTPI 211 (216)
T ss_dssp HHHHHHHHHHHC---CCCCCBTTEEEEEECCTTSSC-CEEETTEEECEEEEEEC------CEEEEESSC
T ss_pred HHHHHHHHHHcCCeeeeeeccccEEEEEEEChhhhh-HhhcCCeEEEEEEEEEecCCCCcEEEEEecce
Confidence 68899999999999888877544421 1 11 122222222 2246678999999873
No 61
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=36.22 E-value=16 Score=32.88 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=26.0
Q ss_pred cHHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 169 DIELVMTQAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
-|.-+| ..|.+|+.+++||+.++||+=.|+=-|
T Consensus 171 ~i~~l~-~MGf~~~~~~~AL~a~~nn~~~A~e~L 203 (368)
T 1oqy_A 171 MLTEIM-SMGYERERVVAALRASYNNPHRAVEYL 203 (368)
T ss_dssp HHHHHH-TTTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444 469999999999999999997776544
No 62
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=33.31 E-value=38 Score=28.84 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.4
Q ss_pred hhCCCHHHHHHHHHHcCCcHHHHHhhh
Q 028782 176 QAGVSRAKAVKALKAADGDIVSAIMEL 202 (204)
Q Consensus 176 QagvSr~kAvkALke~~GDIV~AIM~L 202 (204)
.-|.+|..|+.||..+|+|+-.|+=.|
T Consensus 224 ~mgf~~~~~~~al~~~nWd~~~A~e~L 250 (253)
T 3e46_A 224 AAGFDRNAVIVALSSKSWDVETATELL 250 (253)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 449999999999999999998887544
No 63
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=32.83 E-value=9.2 Score=32.76 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782 170 IELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 170 IeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
+-++|-.+|||.++|++.|..++|-|-.||
T Consensus 275 ~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 304 (306)
T 1nri_A 275 LAIMMILSTLSKSEAKVLLERHQGKLRNAL 304 (306)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcHHHHh
Confidence 346777899999999999999999988776
No 64
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=32.34 E-value=41 Score=23.10 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=21.0
Q ss_pred cHHHHHHhhCCCHHHHHHHHHH
Q 028782 169 DIELVMTQAGVSRAKAVKALKA 190 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke 190 (204)
||..+...-||||++...+|+.
T Consensus 27 dI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHH
T ss_pred eHHHHHHHhCCCHHHHHHHHHH
Confidence 8999999999999999999986
No 65
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=30.11 E-value=30 Score=28.99 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.3
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHc
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAA 191 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~ 191 (204)
..=|.++|.|-|||.++|+..+.+-
T Consensus 242 ~N~V~~~m~~~g~s~eeA~~~~~~~ 266 (320)
T 3bny_A 242 CTSVQILAQEADVTAEAAKRVLFVM 266 (320)
T ss_dssp CSHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHH
Confidence 3579999999999999999888653
No 66
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=36.22 E-value=11 Score=29.69 Aligned_cols=20 Identities=50% Similarity=0.611 Sum_probs=17.0
Q ss_pred HHHHHHHcCCcHHHHHhhhc
Q 028782 184 AVKALKAADGDIVSAIMELT 203 (204)
Q Consensus 184 AvkALke~~GDIV~AIM~Lt 203 (204)
-.+|||.+||||..|+--||
T Consensus 37 L~~ALkAsnGdl~qAV~~LT 56 (129)
T 2lva_A 37 LHEALKASNGDITQAVSLLT 56 (129)
Confidence 35799999999999987776
No 67
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=29.40 E-value=38 Score=27.93 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=21.4
Q ss_pred cccHHHHHHhhCCCHHHHHHHHHHc
Q 028782 167 PKDIELVMTQAGVSRAKAVKALKAA 191 (204)
Q Consensus 167 eeDIeLVm~QagvSr~kAvkALke~ 191 (204)
..=|.++|.|.|||.++|+..+.+-
T Consensus 228 ~n~V~~~m~~~g~s~eeA~~~~~~~ 252 (300)
T 1di1_A 228 CSAVKVLAEESKLGIPATKRVLWSM 252 (300)
T ss_dssp CCHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred chhHHHHHHHcCCCHHHHHHHHHHH
Confidence 3679999999999999999888653
No 68
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=27.52 E-value=43 Score=26.71 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=25.9
Q ss_pred CCCcCCcCHHHHHHHHHHcCCc------ccCCceEEEEEec
Q 028782 58 GRSKQSRSEKKSRKAMLKLGMK------PIPGVSRVTVKKS 92 (204)
Q Consensus 58 ~~~k~sr~eKK~rk~mkKLGlk------~v~gV~rVtI~k~ 92 (204)
-+++.++.|..++++|..+|++ .+||+--+.+.+-
T Consensus 16 iR~~~T~pE~~lr~~L~~~G~rfR~q~~~lpg~pDfv~~~~ 56 (155)
T 1cw0_A 16 IATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEY 56 (155)
T ss_dssp CCSSSCHHHHHHHHHHHHTTCCCEECCTTSTTCCSEEEGGG
T ss_pred hhcCCCcHHHHHHHHHHHCCCeEEEeCCCCCCcccEEcccC
Confidence 4677888899999999999997 3666555544443
No 69
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=26.84 E-value=29 Score=27.58 Aligned_cols=40 Identities=15% Similarity=0.393 Sum_probs=23.9
Q ss_pred HHHHHHHcCCc-------ccCCceEEEEEecCceEEEEcCCeEEeeCCCcEEEEeccc
Q 028782 69 SRKAMLKLGMK-------PIPGVSRVTVKKSKNILFVISKPDVFKSPTTDTYVIFGEA 119 (204)
Q Consensus 69 ~rk~mkKLGlk-------~v~gV~rVtI~k~~~~~fvI~~P~V~ks~gs~tYvVfGea 119 (204)
+++.|.++|++ +++|+-+|++ + ..-+|-++.. .|+|+|..
T Consensus 5 ~~~~l~~~~~~v~~v~~~~~~Gl~~v~~--~--------~~~~y~~~dg-~~~i~G~l 51 (211)
T 1t3b_A 5 IKRKLQSFNISNIVIKSSPISGIKTAVT--D--------QGILYVSEDG-KYLFEGKL 51 (211)
T ss_dssp THHHHHTTTCCSCCCCBCSSTTEECCEE--T--------TEECEEESSS-SCEECSCC
T ss_pred HHHHHHHcCCceeeeecCCCCCeEEEEE--C--------CEEEEEcCCC-CEEEEeeE
Confidence 56678888876 4666655555 2 2223444433 58888874
No 70
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=26.18 E-value=74 Score=21.23 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCHHHHHHHHHHcCCcHHHHHhh
Q 028782 170 IELVMTQAGVSRAKAVKALKAADGDIVSAIME 201 (204)
Q Consensus 170 IeLVm~QagvSr~kAvkALke~~GDIV~AIM~ 201 (204)
|..++.|+|...+=+.+.|..|+=|.=.||-.
T Consensus 10 v~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~ 41 (57)
T 2jp7_A 10 LNKLHLETKLNAEYTFMLAEQSNWNYEVAIKG 41 (57)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 56778999999999999999999998887754
No 71
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=24.59 E-value=51 Score=27.75 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=21.4
Q ss_pred CcccHHHHHHhhCCCHHHHHHHHHH
Q 028782 166 EPKDIELVMTQAGVSRAKAVKALKA 190 (204)
Q Consensus 166 ~eeDIeLVm~QagvSr~kAvkALke 190 (204)
...=|..+|.|-|||.++|+..+.+
T Consensus 233 ~~n~V~~~m~~~g~s~eeA~~~v~~ 257 (337)
T 1ps1_A 233 QNNMVMILRREHGWSKSRSVSHMQN 257 (337)
T ss_dssp CCSHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHH
Confidence 3567899999999999999988755
No 72
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.06 E-value=62 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.8
Q ss_pred cHHHHHHhhCCCHHHHHHHHHH
Q 028782 169 DIELVMTQAGVSRAKAVKALKA 190 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke 190 (204)
-+.-++.+.||||.-+++||..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~ 56 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQS 56 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4667899999999999999865
No 73
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.97 E-value=60 Score=24.01 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.0
Q ss_pred HHHHHHhhCCCHHHHHHHHHH
Q 028782 170 IELVMTQAGVSRAKAVKALKA 190 (204)
Q Consensus 170 IeLVm~QagvSr~kAvkALke 190 (204)
+.-++++.||||.-.++||+.
T Consensus 41 er~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 41 IREFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 345899999999999999975
No 74
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.59 E-value=66 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=29.4
Q ss_pred CCCCcccHHHHHHhhCCCHHHHHHHHHHcCCc
Q 028782 163 TGVEPKDIELVMTQAGVSRAKAVKALKAADGD 194 (204)
Q Consensus 163 ~gv~eeDIeLVm~QagvSr~kAvkALke~~GD 194 (204)
+|++++.+......++-.-++|+..|.+..+|
T Consensus 50 tG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 50 TGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred hCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 59999999999999999999999999987654
No 75
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=21.40 E-value=94 Score=18.37 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=16.8
Q ss_pred cHHHHHHhhCCCHHHHHH-HHH
Q 028782 169 DIELVMTQAGVSRAKAVK-ALK 189 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvk-ALk 189 (204)
-++-...+.|+||++.++ ||.
T Consensus 16 ~Ld~~a~~~g~srS~~ir~ai~ 37 (45)
T 2cpg_A 16 NLEKMAREMGLSKSAMISVALE 37 (45)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHH
Confidence 467788899999999987 444
No 76
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=21.30 E-value=94 Score=25.20 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.6
Q ss_pred ccHHHHHHhhCCCHHHHHHHHHHcCCcHHHHH
Q 028782 168 KDIELVMTQAGVSRAKAVKALKAADGDIVSAI 199 (204)
Q Consensus 168 eDIeLVm~QagvSr~kAvkALke~~GDIV~AI 199 (204)
+-|+-++. .|.+|..||+||..+++|.--|.
T Consensus 132 eaI~rL~~-mGF~r~~viqA~~ac~knee~Aa 162 (171)
T 2qsf_X 132 QAISRLCE-LGFERDLVIQVYFACDKNEEAAA 162 (171)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 34666654 49999999999999999986554
No 77
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=21.27 E-value=91 Score=19.14 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=16.6
Q ss_pred ccHHHHHHhhCCCHHHHHH-HHH
Q 028782 168 KDIELVMTQAGVSRAKAVK-ALK 189 (204)
Q Consensus 168 eDIeLVm~QagvSr~kAvk-ALk 189 (204)
+-++..+.+.|+|+++.++ ||.
T Consensus 22 ~~l~~~a~~~g~s~s~~ir~ai~ 44 (55)
T 2k9i_A 22 DRLMEIAKEKNLTLSDVCRLAIK 44 (55)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 3566777788999999887 444
No 78
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=20.61 E-value=78 Score=23.24 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=19.1
Q ss_pred cHHHHHHhhCCCHHHHHHHHHH
Q 028782 169 DIELVMTQAGVSRAKAVKALKA 190 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke 190 (204)
-+.-++.+.||||.-+++||..
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~ 60 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQE 60 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3667899999999999999875
No 79
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=20.45 E-value=82 Score=22.64 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.7
Q ss_pred cHHHHHHhhCCCHHHHHHHHHH
Q 028782 169 DIELVMTQAGVSRAKAVKALKA 190 (204)
Q Consensus 169 DIeLVm~QagvSr~kAvkALke 190 (204)
-+.-++++.||||.-+++||+.
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~ 66 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRK 66 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3566899999999999999875
Done!