BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028783
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|T Chain T, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 209
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/140 (75%), Positives = 118/140 (84%)
Query: 27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
+E+ + + ++ QNIRKLVKDGFIIRKP KIHSRSRARR EAK+KGRHSGYGKR+GTRE
Sbjct: 27 NEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTRE 86
Query: 87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
ARLPTKI KYRE+KKIDKHMYHDMY+KVKGN+FKNKRVLMESIHKSK
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSK 146
Query: 147 AEKAREKTLSDQFEAKRAKN 166
AEKAREKTLSDQFEAKRAK+
Sbjct: 147 AEKAREKTLSDQFEAKRAKS 166
>pdb|2ZKR|PP Chain p, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 196
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 100/139 (71%)
Query: 27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
+E + ++ Q IRKL+KDG IIRKP +HSR+R R+ A+RKGRH G GKRKGT
Sbjct: 27 NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86
Query: 87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
AR+P K+ +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK K
Sbjct: 87 ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146
Query: 147 AEKAREKTLSDQFEAKRAK 165
A+KAR+K L+DQ EA+R+K
Sbjct: 147 ADKARKKLLADQAEARRSK 165
>pdb|3ZF7|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 260
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 92/128 (71%)
Query: 39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
+++RKL+KDG ++RKP K+HSRSR R+MK AK GRH G G+R+GTREAR+P+K
Sbjct: 39 KSVRKLIKDGLVMRKPVKVHSRSRWRQMKLAKSMGRHEGTGRREGTREARMPSKDLWMRR 98
Query: 99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
KYRE KKID+H+Y ++YMK KGNVF+NKR LME IHK K EK + + L++Q
Sbjct: 99 LRILRRLLRKYREEKKIDRHIYRELYMKAKGNVFRNKRNLMEHIHKVKNEKKKARQLAEQ 158
Query: 159 FEAKRAKN 166
AKR K+
Sbjct: 159 LAAKRLKD 166
>pdb|4A1A|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 185
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/140 (52%), Positives = 98/140 (70%)
Query: 27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
+E + + ++ +IRKL+KDG ++++ T IHSRSRAR EAKRKGRH+G GKRKGTR
Sbjct: 27 NESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRN 86
Query: 87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
AR+PTK+ KYR +KKIDKH YH+ Y+ KGN++KNK VL+E+IH SK
Sbjct: 87 ARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSK 146
Query: 147 AEKAREKTLSDQFEAKRAKN 166
A+K + L+ Q EA+RAKN
Sbjct: 147 ADKIKSDKLTSQQEARRAKN 166
>pdb|2WW9|J Chain J, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|J Chain J, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
pdb|2WWB|J Chain J, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
The Actively Translating Wheat Germ 80s Ribosome
pdb|3IZS|T Chain T, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|S Chain S, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|S Chain S, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|R Chain R, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|R Chain R, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|R Chain R, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 189
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 96/140 (68%)
Query: 27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
+E + ++ IRKLVK+G I++K +HS+SR R ++KR+GRHSGYGKRKGTRE
Sbjct: 27 NETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTRE 86
Query: 87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
ARLP+++ KYR++ KIDKH+YH +Y + KGN FK+KR L+E I ++K
Sbjct: 87 ARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAK 146
Query: 147 AEKAREKTLSDQFEAKRAKN 166
A+ REK L+++ EA+R KN
Sbjct: 147 ADAQREKALNEEAEARRLKN 166
>pdb|4A17|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2
Length = 185
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 85/121 (70%)
Query: 27 SEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTRE 86
+E + + ++ +IRKL+KDG ++++ T IHSRSRAR EAKRKGRH+G GKRKGTR
Sbjct: 27 NESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKGTRN 86
Query: 87 ARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
AR+PTK+ KYR +KKIDKH YH+ Y+ KGN++KNK VL+E+IH SK
Sbjct: 87 ARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSK 146
Query: 147 A 147
A
Sbjct: 147 A 147
>pdb|3JYW|P Chain P, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 176
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 73/102 (71%)
Query: 41 IRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXX 100
IRKLVK+G I++K +HS+SR R ++KR+GRHSGYGKRKGTREARLP+++
Sbjct: 40 IRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLR 99
Query: 101 XXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESI 142
KYR++ KIDKH+YH +Y + KGN FK+KR L+E I
Sbjct: 100 VLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHI 141
>pdb|1S1I|P Chain P, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 142
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 73/102 (71%)
Query: 41 IRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXX 100
IRKLVK+G I++K +HS+SR R ++KR+GRHSGYGKRKGTREARLP+++
Sbjct: 40 IRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLR 99
Query: 101 XXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESI 142
KYR++ KIDKH+YH +Y + KGN FK+KR L+E I
Sbjct: 100 VLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHI 141
>pdb|3J21|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 150
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%)
Query: 39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
++I++L+K+G I +KP K SR RA+ E K+KGRH G G RKG + AR+ K
Sbjct: 39 EDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKT 98
Query: 99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 138
K + KKID+ Y +Y++ KG FKNK L
Sbjct: 99 IRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>pdb|1FFK|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1JJ2|O Chain O, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|O Chain O, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|Q Chain Q, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|Q Chain Q, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|Q Chain Q, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|Q Chain Q, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|Q Chain Q, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|Q Chain Q, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|Q Chain Q, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|Q Chain Q, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|Q Chain Q, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|Q Chain Q, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|Q Chain Q, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|Q Chain Q, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|Q Chain Q, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|O Chain O, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|O Chain O, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|O Chain O, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CXC|O Chain O, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
Length = 148
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
+++R+LV +G I K K +SR RAR ++ + KG G G RKG AR +K
Sbjct: 38 EDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESR 97
Query: 99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 132
+ R+ + Y D+Y K G F
Sbjct: 98 IRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 131
>pdb|3OW2|O Chain O, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 143
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
+++R+LV +G I K K +SR RAR ++ + KG G G RKG AR +K
Sbjct: 38 EDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESR 97
Query: 99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 132
+ R+ + Y D+Y K G F
Sbjct: 98 IRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 131
>pdb|3G4S|P Chain P, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|P Chain P, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|P Chain P, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
Length = 143
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
+++R+LV +G I K K +SR RAR ++ + G G G RKG AR +K
Sbjct: 38 EDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESR 97
Query: 99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 132
+ R+ + Y D+Y K G F
Sbjct: 98 IRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 131
>pdb|1S72|P Chain P, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|P Chain P, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|P Chain P, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|P Chain P, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|P Chain P, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|P Chain P, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|P Chain P, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|P Chain P, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|P Chain P, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|P Chain P, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|P Chain P, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|P Chain P, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|P Chain P, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|P Chain P, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|P Chain P, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|P Chain P, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|P Chain P, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|P Chain P, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|P Chain P, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|P Chain P, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|P Chain P, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|P Chain P, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|P Chain P, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|P Chain P, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|P Chain P, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|P Chain P, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|P Chain P, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|O Chain O, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|P Chain P, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|P Chain P, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|P Chain P, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|P Chain P, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|P Chain P, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|P Chain P, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 149
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 39 QNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXX 98
+++R+LV +G I K K +SR RAR ++ + G G G RKG AR +K
Sbjct: 39 EDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESR 98
Query: 99 XXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 132
+ R+ + Y D+Y K G F
Sbjct: 99 IRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,766,371
Number of Sequences: 62578
Number of extensions: 147334
Number of successful extensions: 260
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 13
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)