Query 028783
Match_columns 204
No_of_seqs 167 out of 287
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 03:14:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_R 60S ribosomal protein L 100.0 5.7E-81 1.9E-85 526.6 10.8 176 8-183 4-183 (189)
2 3iz5_T 60S ribosomal protein L 100.0 5.8E-80 2E-84 526.2 11.9 178 8-185 4-185 (209)
3 4a1a_O RPL19, 60S ribosomal pr 100.0 5.4E-80 1.9E-84 519.1 10.4 171 8-178 4-178 (185)
4 2zkr_p 60S ribosomal protein L 100.0 9.6E-78 3.3E-82 509.1 12.8 179 7-185 3-185 (196)
5 4a17_O RPL19, 60S ribosomal pr 100.0 1.6E-75 5.4E-80 491.9 12.8 158 8-165 4-165 (185)
6 1vq8_P 50S ribosomal protein L 100.0 8.3E-70 2.9E-74 444.9 9.0 143 7-149 3-149 (149)
7 3j21_Q PFEL19, 50S ribosomal p 100.0 3E-69 1E-73 442.0 11.0 138 8-145 4-145 (150)
8 3jyw_P 60S ribosomal protein L 100.0 7.1E-67 2.4E-71 437.0 5.4 150 8-157 3-156 (176)
9 1fme_A FSD-EY peptide; beta-BE 68.1 2 6.8E-05 25.9 1.2 21 126-146 6-26 (28)
10 2vn2_A DNAD, chromosome replic 33.5 16 0.00054 27.3 1.4 22 36-57 67-88 (128)
11 2ab3_A ZNF29; zinc finger prot 22.0 36 0.0012 16.9 1.1 14 129-142 11-24 (29)
12 2m0d_A Zinc finger and BTB dom 21.2 50 0.0017 16.3 1.7 15 129-143 10-24 (30)
13 1ard_A Yeast transcription fac 20.5 64 0.0022 15.8 2.0 15 129-143 9-23 (29)
No 1
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=100.00 E-value=5.7e-81 Score=526.63 Aligned_cols=176 Identities=49% Similarity=0.807 Sum_probs=170.2
Q ss_pred CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783 8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG 83 (204)
Q Consensus 8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG 83 (204)
.++|+||||+| || +|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+|+|
T Consensus 4 L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~GkRKG 83 (189)
T 3u5e_R 4 LRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKG 83 (189)
T ss_dssp CHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGGCCS
T ss_pred hHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCcccc
Confidence 46899999999 88 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 028783 84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR 163 (204)
Q Consensus 84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr 163 (204)
|+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++++|+|||||+|
T Consensus 84 t~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqaea~r 163 (189)
T 3u5e_R 84 TREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARR 163 (189)
T ss_dssp CHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhc
Q 028783 164 AKNKASRERKLARREERLAQ 183 (204)
Q Consensus 164 ~k~k~~r~r~~~r~~~~~~~ 183 (204)
+++++++++++++.+++.++
T Consensus 164 ~k~k~~~~r~~~~~~~k~~~ 183 (189)
T 3u5e_R 164 LKNRAARDRRAQRVAEKRDA 183 (189)
T ss_dssp HHHHHHHHHHHHTTTSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887655443
No 2
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=100.00 E-value=5.8e-80 Score=526.16 Aligned_cols=178 Identities=80% Similarity=1.157 Sum_probs=171.9
Q ss_pred CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783 8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG 83 (204)
Q Consensus 8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG 83 (204)
.++|+||||+| || +|||||||++||++||||||||+||+||+||++|++||||+||+++++++++|||+|+|+|+|
T Consensus 4 L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~AnsRq~IRkLIkdGlIi~Kpv~~hSR~R~r~~~~ar~kGRh~G~GkRKG 83 (209)
T 3iz5_T 4 LKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGKRRG 83 (209)
T ss_dssp CHHHHHHHHHHHTSCTTTEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCHHHHHHHHHTTSSCCSCSSSSSCS
T ss_pred hHHHHHHHHHHhCCCCCeeccChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCCChHHHHHHHHHHHhCCCCCCCcccc
Confidence 46899999999 88 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 028783 84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR 163 (204)
Q Consensus 84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr 163 (204)
|+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|+||||++|||++++|+|+|||||+|
T Consensus 84 t~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~KaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dqaeArr 163 (209)
T 3iz5_T 84 TREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR 163 (209)
T ss_dssp CTTTTCCSHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHTTCCCSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhcCC
Q 028783 164 AKNKASRERKLARREERLAQGP 185 (204)
Q Consensus 164 ~k~k~~r~r~~~r~~~~~~~~~ 185 (204)
+|+++++++++++.+++.++++
T Consensus 164 ~k~k~~r~rr~~r~~~~~~~~~ 185 (209)
T 3iz5_T 164 AKSKASRERKIARREERLAPGP 185 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999666655544
No 3
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=100.00 E-value=5.4e-80 Score=519.14 Aligned_cols=171 Identities=54% Similarity=0.870 Sum_probs=138.1
Q ss_pred CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783 8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG 83 (204)
Q Consensus 8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG 83 (204)
.++|+||||+| || +|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+|+|
T Consensus 4 L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~GkRKG 83 (185)
T 4a1a_O 4 LRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKG 83 (185)
T ss_dssp CHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTTCCS
T ss_pred hHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCcccc
Confidence 46899999999 88 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 028783 84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR 163 (204)
Q Consensus 84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr 163 (204)
|+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+|||||+|
T Consensus 84 t~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqaea~r 163 (185)
T 4a1a_O 84 TRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARR 163 (185)
T ss_dssp CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC----------------
T ss_pred chhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHH
Q 028783 164 AKNKASRERKLARRE 178 (204)
Q Consensus 164 ~k~k~~r~r~~~r~~ 178 (204)
+|++++++++.++.+
T Consensus 164 ~k~k~~r~~~~~~~~ 178 (185)
T 4a1a_O 164 AKNTASRAKRNEKAQ 178 (185)
T ss_dssp ---------------
T ss_pred HHHHHHHHhHHHHHH
Confidence 999999998877654
No 4
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.6e-78 Score=509.13 Aligned_cols=179 Identities=56% Similarity=0.869 Sum_probs=145.3
Q ss_pred CCCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcc
Q 028783 7 PWPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 82 (204)
Q Consensus 7 ~~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRK 82 (204)
..++|+||||+| || +||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|||+|+
T Consensus 3 ~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~GkRK 82 (196)
T 2zkr_p 3 MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82 (196)
T ss_dssp ------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC-----
T ss_pred chHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCCCc
Confidence 457899999999 88 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHH
Q 028783 83 GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAK 162 (204)
Q Consensus 83 Gtk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeAr 162 (204)
||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.|||++++++|+||+||+
T Consensus 83 Gt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~ea~ 162 (196)
T 2zkr_p 83 GTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEAR 162 (196)
T ss_dssp -CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHHHH
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHhcCC
Q 028783 163 RAKNKASRERKLARREERLAQGP 185 (204)
Q Consensus 163 r~k~k~~r~r~~~r~~~~~~~~~ 185 (204)
|++++++++++.++.+++.+++.
T Consensus 163 r~k~k~~r~~r~~~~~~~~~~~~ 185 (196)
T 2zkr_p 163 RSKTKEARKRREERLQAKKEEII 185 (196)
T ss_dssp HTTTHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876654
No 5
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=100.00 E-value=1.6e-75 Score=491.92 Aligned_cols=158 Identities=51% Similarity=0.816 Sum_probs=154.2
Q ss_pred CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783 8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG 83 (204)
Q Consensus 8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG 83 (204)
.++|+||||+| || +|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|+|
T Consensus 4 L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~GkRKG 83 (185)
T 4a17_O 4 LRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGKRKG 83 (185)
T ss_dssp CHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTTCCS
T ss_pred hHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCCCCC
Confidence 46899999999 88 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 028783 84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR 163 (204)
Q Consensus 84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~dQaeArr 163 (204)
|+|||||+|++||+|||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||++|||++++|+|+|||||.-
T Consensus 84 t~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqaea~~ 163 (185)
T 4a17_O 84 TRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXXXXX 163 (185)
T ss_dssp CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred hh
Q 028783 164 AK 165 (204)
Q Consensus 164 ~k 165 (204)
.-
T Consensus 164 ~~ 165 (185)
T 4a17_O 164 XX 165 (185)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 6
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=100.00 E-value=8.3e-70 Score=444.89 Aligned_cols=143 Identities=27% Similarity=0.392 Sum_probs=135.5
Q ss_pred CCCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCcc
Q 028783 7 PWPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 82 (204)
Q Consensus 7 ~~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRK 82 (204)
..++|+||||+| || +|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|+
T Consensus 3 ~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~GkRk 82 (149)
T 1vq8_P 3 DLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRK 82 (149)
T ss_dssp CCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGGCC
T ss_pred chHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCCCc
Confidence 356899999999 88 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHH
Q 028783 83 GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK 149 (204)
Q Consensus 83 Gtk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek 149 (204)
||+|||||+|+.||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||+.++|+
T Consensus 83 Gt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~ 149 (149)
T 1vq8_P 83 GKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA 149 (149)
T ss_dssp SCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 7
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3e-69 Score=442.03 Aligned_cols=138 Identities=37% Similarity=0.632 Sum_probs=135.3
Q ss_pred CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783 8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG 83 (204)
Q Consensus 8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG 83 (204)
..+|+||||+| || +|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+|+|
T Consensus 4 l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~GkRkG 83 (150)
T 3j21_Q 4 LKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKG 83 (150)
T ss_dssp CHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTTCCS
T ss_pred hHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCcccC
Confidence 46899999999 88 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHh
Q 028783 84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKS 145 (204)
Q Consensus 84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~ 145 (204)
|+|||||+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|+||||..
T Consensus 84 t~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~ 145 (150)
T 3j21_Q 84 KKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEH 145 (150)
T ss_dssp CHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 8
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=7.1e-67 Score=437.05 Aligned_cols=150 Identities=48% Similarity=0.793 Sum_probs=144.8
Q ss_pred CCCCccccccc--cc--ceeccCCCcccccCcchhHHHHHhhhcCceeecCCCCCChhHHHHHHHHHhcCCCCCCCCccc
Q 028783 8 WPTPHRIFSSV--CE--SHITSKSEIPSLLLPSAGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG 83 (204)
Q Consensus 8 ~~~q~rla~~V--~g--kvWlDPne~~eIa~AnSR~~IRkLIKdGlIi~Kp~~~hSR~R~R~~~~ak~KGRh~G~GkRKG 83 (204)
.++|+||||+| || +|||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|+|
T Consensus 3 l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkRkG 82 (176)
T 3jyw_P 3 LRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKG 82 (176)
T ss_dssp CHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSCSS
T ss_pred cHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCCcc
Confidence 36899999999 88 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHHhhcCCccccHHHHHHHHHHhhhHHHHhhhhhH
Q 028783 84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSD 157 (204)
Q Consensus 84 tk~AR~p~K~~WmrRiR~lRRlLr~yRe~kkID~h~Yr~LY~kaKGn~FKnk~~L~e~Ihk~Kaek~r~k~l~d 157 (204)
|+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|+||||++|+|+++.-..+.
T Consensus 83 t~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~ 156 (176)
T 3jyw_P 83 TREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAA 156 (176)
T ss_dssp CTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGG
T ss_pred cccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765443
No 9
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=68.06 E-value=2 Score=25.93 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.8
Q ss_pred hhcCCccccHHHHHHHHHHhh
Q 028783 126 KVKGNVFKNKRVLMESIHKSK 146 (204)
Q Consensus 126 kaKGn~FKnk~~L~e~Ihk~K 146 (204)
+-||-.|+|-..|.++|.|.|
T Consensus 6 kykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHCC
T ss_pred hhcccccccHHHHHHHHHHhc
Confidence 568999999999999999865
No 10
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.51 E-value=16 Score=27.34 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=15.6
Q ss_pred chhHHHHHhhhcCceeecCCCC
Q 028783 36 SAGQNIRKLVKDGFIIRKPTKI 57 (204)
Q Consensus 36 nSR~~IRkLIKdGlIi~Kp~~~ 57 (204)
...+-|..|++.|+|.+.+...
T Consensus 67 ~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 67 ECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp HHHHHHHHHHHTTSSEECC---
T ss_pred HHHHHHHHHHHCCCEEEEeEEC
Confidence 3445688999999999988744
No 11
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=22.03 E-value=36 Score=16.88 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=12.2
Q ss_pred CCccccHHHHHHHH
Q 028783 129 GNVFKNKRVLMESI 142 (204)
Q Consensus 129 Gn~FKnk~~L~e~I 142 (204)
|..|.+...|..|+
T Consensus 11 ~k~f~~~~~l~~H~ 24 (29)
T 2ab3_A 11 GRSFNDRRKLNRHK 24 (29)
T ss_dssp CEEESSHHHHHHHH
T ss_pred cCccCCHHHHHHHH
Confidence 67899999999985
No 12
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.23 E-value=50 Score=16.25 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.8
Q ss_pred CCccccHHHHHHHHH
Q 028783 129 GNVFKNKRVLMESIH 143 (204)
Q Consensus 129 Gn~FKnk~~L~e~Ih 143 (204)
|..|.+...|..|+.
T Consensus 10 ~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 10 GRSFSDPTSKMRHLE 24 (30)
T ss_dssp CCEESCHHHHHHHHH
T ss_pred CcccCCHHHHHHHHH
Confidence 678999999999864
No 13
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.49 E-value=64 Score=15.83 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=12.8
Q ss_pred CCccccHHHHHHHHH
Q 028783 129 GNVFKNKRVLMESIH 143 (204)
Q Consensus 129 Gn~FKnk~~L~e~Ih 143 (204)
|..|.+...|..|+.
T Consensus 9 ~~~f~~~~~l~~H~~ 23 (29)
T 1ard_A 9 TRAFARQEHLKRHYR 23 (29)
T ss_dssp CCBCSSHHHHHHHHH
T ss_pred CcccCCHHHHHHHHH
Confidence 778999999999864
Done!