Query 028784
Match_columns 204
No_of_seqs 168 out of 1863
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 7.8E-31 1.7E-35 180.0 17.1 147 56-203 8-154 (160)
2 KOG0027 Calmodulin and related 100.0 1.7E-28 3.8E-33 171.6 16.7 142 63-204 3-148 (151)
3 KOG0028 Ca2+-binding protein ( 99.9 6.8E-26 1.5E-30 152.3 15.4 146 59-204 24-169 (172)
4 PTZ00183 centrin; Provisional 99.9 9.5E-24 2.1E-28 148.9 17.9 142 62-203 11-152 (158)
5 PTZ00184 calmodulin; Provision 99.9 1.1E-23 2.3E-28 147.1 17.1 142 62-203 5-146 (149)
6 KOG0031 Myosin regulatory ligh 99.9 1.7E-23 3.8E-28 139.8 15.3 140 61-204 25-164 (171)
7 KOG0030 Myosin essential light 99.9 6E-23 1.3E-27 134.9 13.6 141 62-203 5-149 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.9 2.3E-20 4.9E-25 132.8 13.9 140 60-203 25-173 (187)
9 KOG0037 Ca2+-binding protein, 99.8 2.9E-19 6.4E-24 126.7 17.1 131 66-203 55-186 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.9E-19 4.1E-24 128.1 14.2 146 57-203 15-173 (193)
11 KOG0036 Predicted mitochondria 99.8 2.2E-19 4.8E-24 137.9 15.2 139 60-204 6-145 (463)
12 PLN02964 phosphatidylserine de 99.6 4.1E-14 9E-19 117.5 13.5 119 60-183 135-271 (644)
13 cd05022 S-100A13 S-100A13: S-1 99.5 5.2E-14 1.1E-18 88.7 7.2 64 140-203 7-73 (89)
14 PF13499 EF-hand_7: EF-hand do 99.5 1.8E-13 3.9E-18 82.1 7.7 62 142-203 1-66 (66)
15 KOG4223 Reticulocalbin, calume 99.5 3.7E-13 7.9E-18 101.2 9.8 136 66-201 161-301 (325)
16 KOG0038 Ca2+-binding kinase in 99.5 7E-13 1.5E-17 88.4 9.2 140 61-204 21-176 (189)
17 cd05027 S-100B S-100B: S-100B 99.4 9.2E-13 2E-17 83.1 8.2 64 140-203 7-77 (88)
18 KOG0037 Ca2+-binding protein, 99.4 1.7E-12 3.7E-17 92.6 9.9 125 64-201 90-216 (221)
19 cd05022 S-100A13 S-100A13: S-1 99.4 9.4E-13 2E-17 82.9 7.4 68 65-132 5-75 (89)
20 KOG0377 Protein serine/threoni 99.4 4.1E-12 8.9E-17 99.1 12.1 136 66-203 462-613 (631)
21 KOG0027 Calmodulin and related 99.4 6.7E-12 1.5E-16 87.7 11.4 101 103-204 7-112 (151)
22 PF13499 EF-hand_7: EF-hand do 99.4 2.4E-12 5.1E-17 77.2 7.2 62 69-130 1-66 (66)
23 KOG0044 Ca2+ sensor (EF-Hand s 99.4 3.5E-12 7.5E-17 91.1 9.2 107 63-169 59-175 (193)
24 cd05027 S-100B S-100B: S-100B 99.4 4.7E-12 1E-16 79.9 8.3 68 65-132 5-79 (88)
25 COG5126 FRQ1 Ca2+-binding prot 99.3 3E-11 6.5E-16 83.5 11.8 99 104-204 20-119 (160)
26 KOG4223 Reticulocalbin, calume 99.3 1.4E-11 3E-16 92.8 10.5 138 66-203 75-226 (325)
27 cd05029 S-100A6 S-100A6: S-100 99.3 1.2E-11 2.6E-16 78.0 8.0 63 141-203 10-77 (88)
28 PTZ00183 centrin; Provisional 99.3 6.2E-11 1.3E-15 83.3 12.4 99 104-203 17-116 (158)
29 cd05031 S-100A10_like S-100A10 99.3 1.5E-11 3.3E-16 78.9 7.9 64 140-203 7-77 (94)
30 cd05025 S-100A1 S-100A1: S-100 99.3 2.2E-11 4.8E-16 77.8 8.1 64 140-203 8-78 (92)
31 cd05026 S-100Z S-100Z: S-100Z 99.3 2.2E-11 4.8E-16 77.8 8.0 63 141-203 10-79 (93)
32 PF13833 EF-hand_8: EF-hand do 99.3 2.5E-11 5.4E-16 69.7 6.7 50 154-203 1-51 (54)
33 cd05029 S-100A6 S-100A6: S-100 99.2 5.2E-11 1.1E-15 75.1 8.0 69 64-132 6-79 (88)
34 PTZ00184 calmodulin; Provision 99.2 2.2E-10 4.8E-15 79.6 12.1 99 104-203 11-110 (149)
35 cd00052 EH Eps15 homology doma 99.2 3.6E-11 7.9E-16 72.1 6.5 58 144-203 2-59 (67)
36 smart00027 EH Eps15 homology d 99.2 7.5E-11 1.6E-15 76.0 8.2 69 62-132 4-72 (96)
37 smart00027 EH Eps15 homology d 99.2 6.9E-11 1.5E-15 76.2 8.0 63 139-203 8-70 (96)
38 cd05031 S-100A10_like S-100A10 99.2 8.1E-11 1.8E-15 75.5 8.0 67 66-132 6-79 (94)
39 cd05026 S-100Z S-100Z: S-100Z 99.2 1E-10 2.2E-15 74.7 8.2 69 64-132 6-81 (93)
40 cd00213 S-100 S-100: S-100 dom 99.2 6.2E-11 1.3E-15 75.1 7.1 64 140-203 7-77 (88)
41 cd05025 S-100A1 S-100A1: S-100 99.2 1.1E-10 2.4E-15 74.6 8.2 68 65-132 6-80 (92)
42 PLN02964 phosphatidylserine de 99.2 1.2E-10 2.5E-15 97.2 9.9 118 82-203 118-241 (644)
43 cd00051 EFh EF-hand, calcium b 99.2 2.3E-10 5E-15 67.1 8.0 62 143-204 2-63 (63)
44 cd00213 S-100 S-100: S-100 dom 99.2 1.7E-10 3.6E-15 73.2 7.4 69 64-132 4-79 (88)
45 cd05023 S-100A11 S-100A11: S-1 99.2 2.6E-10 5.7E-15 72.0 8.0 64 140-203 8-78 (89)
46 cd00052 EH Eps15 homology doma 99.1 3.1E-10 6.7E-15 68.0 7.0 60 71-132 2-61 (67)
47 KOG0034 Ca2+/calmodulin-depend 99.1 6.8E-10 1.5E-14 79.4 9.2 100 71-170 69-176 (187)
48 PF13833 EF-hand_8: EF-hand do 99.1 4.3E-10 9.3E-15 64.4 6.5 52 81-132 1-53 (54)
49 KOG0028 Ca2+-binding protein ( 99.1 4.3E-09 9.4E-14 71.6 11.0 99 104-203 33-132 (172)
50 cd00252 SPARC_EC SPARC_EC; ext 99.1 8.6E-10 1.9E-14 72.9 7.3 61 139-203 46-106 (116)
51 cd00051 EFh EF-hand, calcium b 99.1 1.3E-09 2.7E-14 63.9 7.3 61 70-130 2-62 (63)
52 cd05023 S-100A11 S-100A11: S-1 99.0 1.8E-09 3.9E-14 68.2 8.2 69 64-132 5-80 (89)
53 PF14658 EF-hand_9: EF-hand do 99.0 1.2E-09 2.6E-14 63.8 6.3 60 145-204 2-63 (66)
54 KOG2643 Ca2+ binding protein, 99.0 2E-09 4.3E-14 84.3 9.3 132 67-204 317-452 (489)
55 cd05030 calgranulins Calgranul 99.0 1.2E-09 2.6E-14 69.0 6.6 64 140-203 7-77 (88)
56 KOG0040 Ca2+-binding actin-bun 99.0 6.8E-09 1.5E-13 91.4 12.4 134 62-203 2247-2396(2399)
57 cd00252 SPARC_EC SPARC_EC; ext 99.0 4.4E-09 9.6E-14 69.5 7.6 65 63-131 43-107 (116)
58 PF14658 EF-hand_9: EF-hand do 99.0 4E-09 8.7E-14 61.6 6.5 60 73-132 3-64 (66)
59 KOG0041 Predicted Ca2+-binding 98.9 1.1E-08 2.3E-13 72.3 9.5 110 57-166 88-200 (244)
60 KOG2562 Protein phosphatase 2 98.9 1.3E-08 2.7E-13 80.4 10.7 128 70-201 280-420 (493)
61 cd05030 calgranulins Calgranul 98.9 6.9E-09 1.5E-13 65.6 7.0 68 65-132 5-79 (88)
62 KOG2643 Ca2+ binding protein, 98.9 3.5E-08 7.6E-13 77.4 11.1 133 65-203 230-382 (489)
63 KOG0041 Predicted Ca2+-binding 98.8 1.6E-08 3.5E-13 71.4 7.2 75 123-203 87-161 (244)
64 KOG0031 Myosin regulatory ligh 98.8 5.1E-08 1.1E-12 66.0 8.0 70 63-132 96-165 (171)
65 cd05024 S-100A10 S-100A10: A s 98.7 1.7E-07 3.6E-12 58.8 7.8 62 141-203 8-74 (91)
66 KOG4251 Calcium binding protei 98.7 7.4E-08 1.6E-12 70.3 6.7 66 65-130 98-166 (362)
67 KOG0036 Predicted mitochondria 98.6 5.2E-07 1.1E-11 70.6 10.9 96 103-203 13-108 (463)
68 PF00036 EF-hand_1: EF hand; 98.6 6.5E-08 1.4E-12 47.5 3.9 27 143-169 2-28 (29)
69 PF00036 EF-hand_1: EF hand; 98.6 5.3E-08 1.1E-12 47.8 3.5 29 69-97 1-29 (29)
70 cd05024 S-100A10 S-100A10: A s 98.6 5E-07 1.1E-11 56.6 8.4 67 65-132 5-76 (91)
71 KOG0030 Myosin essential light 98.6 1.7E-07 3.7E-12 62.5 6.5 68 63-131 83-150 (152)
72 PF13405 EF-hand_6: EF-hand do 98.5 2.1E-07 4.5E-12 46.7 3.9 30 142-171 1-31 (31)
73 KOG0169 Phosphoinositide-speci 98.5 2.7E-06 5.9E-11 71.4 12.3 136 63-203 131-272 (746)
74 PF13405 EF-hand_6: EF-hand do 98.5 2.4E-07 5.3E-12 46.4 3.5 30 69-98 1-31 (31)
75 PF12763 EF-hand_4: Cytoskelet 98.4 3.4E-06 7.3E-11 54.7 7.8 68 62-132 4-71 (104)
76 KOG0751 Mitochondrial aspartat 98.4 1.5E-06 3.2E-11 69.5 7.1 126 68-201 108-240 (694)
77 KOG0751 Mitochondrial aspartat 98.3 2.1E-05 4.5E-10 63.2 13.0 103 65-170 30-137 (694)
78 PF14788 EF-hand_10: EF hand; 98.3 2.9E-06 6.3E-11 46.8 5.7 49 84-132 1-49 (51)
79 KOG4666 Predicted phosphate ac 98.3 9.6E-07 2.1E-11 67.0 4.9 98 104-203 259-357 (412)
80 PRK12309 transaldolase/EF-hand 98.3 4.5E-06 9.8E-11 66.7 9.0 54 137-203 330-383 (391)
81 KOG0377 Protein serine/threoni 98.3 3.2E-06 6.9E-11 66.8 7.4 66 68-133 547-616 (631)
82 PF12763 EF-hand_4: Cytoskelet 98.3 6.5E-06 1.4E-10 53.4 7.6 63 138-203 7-69 (104)
83 PF14788 EF-hand_10: EF hand; 98.3 4.8E-06 1E-10 46.0 5.5 47 157-203 1-47 (51)
84 KOG0038 Ca2+-binding kinase in 98.3 8.7E-06 1.9E-10 54.9 7.8 98 73-170 76-178 (189)
85 PF13202 EF-hand_5: EF hand; P 98.2 3.6E-06 7.7E-11 39.8 3.3 23 144-166 2-24 (25)
86 PF13202 EF-hand_5: EF hand; P 98.0 6.9E-06 1.5E-10 38.8 2.9 24 70-93 1-24 (25)
87 KOG0040 Ca2+-binding actin-bun 98.0 1.6E-05 3.5E-10 71.1 6.5 63 141-203 2253-2322(2399)
88 PF10591 SPARC_Ca_bdg: Secrete 98.0 4E-06 8.7E-11 55.4 2.0 62 138-201 51-112 (113)
89 PF10591 SPARC_Ca_bdg: Secrete 97.9 4.3E-06 9.4E-11 55.2 1.8 64 63-128 49-112 (113)
90 PRK12309 transaldolase/EF-hand 97.9 5.4E-05 1.2E-09 60.6 8.1 58 98-169 328-385 (391)
91 KOG1029 Endocytic adaptor prot 97.9 0.00023 5E-09 60.2 11.5 61 141-203 195-255 (1118)
92 KOG2562 Protein phosphatase 2 97.9 9.9E-05 2.1E-09 59.0 8.9 130 68-201 225-375 (493)
93 KOG0046 Ca2+-binding actin-bun 97.9 6.6E-05 1.4E-09 60.8 7.3 74 59-133 10-86 (627)
94 PF09279 EF-hand_like: Phospho 97.8 5.9E-05 1.3E-09 47.0 5.3 61 142-203 1-67 (83)
95 KOG4666 Predicted phosphate ac 97.8 8.2E-05 1.8E-09 56.8 6.7 103 67-171 258-361 (412)
96 KOG0046 Ca2+-binding actin-bun 97.7 0.00013 2.8E-09 59.2 6.6 62 141-203 19-83 (627)
97 KOG1707 Predicted Ras related/ 97.6 0.00058 1.3E-08 56.4 8.9 140 60-202 187-374 (625)
98 KOG4065 Uncharacterized conser 97.5 0.0007 1.5E-08 43.9 6.5 58 146-203 72-143 (144)
99 KOG4251 Calcium binding protei 97.4 0.00011 2.5E-09 54.0 2.7 60 141-200 101-163 (362)
100 KOG0035 Ca2+-binding actin-bun 97.4 0.0014 2.9E-08 57.0 9.4 103 62-165 741-848 (890)
101 PF05042 Caleosin: Caleosin re 97.3 0.0036 7.9E-08 43.9 9.2 133 68-201 7-162 (174)
102 KOG4065 Uncharacterized conser 97.3 0.0015 3.2E-08 42.4 6.2 59 71-129 70-142 (144)
103 smart00054 EFh EF-hand, calciu 97.2 0.00058 1.2E-08 32.4 2.9 27 70-96 2-28 (29)
104 smart00054 EFh EF-hand, calciu 97.1 0.00069 1.5E-08 32.1 3.1 25 144-168 3-27 (29)
105 PLN02952 phosphoinositide phos 97.1 0.0062 1.3E-07 51.5 10.0 86 118-204 14-109 (599)
106 PF09279 EF-hand_like: Phospho 97.1 0.0019 4.1E-08 40.1 5.4 63 69-132 1-69 (83)
107 PF08726 EFhand_Ca_insen: Ca2+ 96.5 0.0018 3.8E-08 38.5 1.9 58 138-203 3-67 (69)
108 KOG1029 Endocytic adaptor prot 96.2 0.026 5.6E-07 48.5 7.8 67 64-132 191-257 (1118)
109 KOG1955 Ral-GTPase effector RA 95.9 0.032 7E-07 45.5 6.6 70 61-132 224-293 (737)
110 KOG0998 Synaptic vesicle prote 95.9 0.024 5.2E-07 50.3 6.5 136 62-202 123-342 (847)
111 KOG3555 Ca2+-binding proteogly 95.8 0.032 6.9E-07 43.5 5.9 100 67-171 210-312 (434)
112 KOG1955 Ral-GTPase effector RA 95.8 0.025 5.5E-07 46.1 5.5 62 140-203 230-291 (737)
113 PF05517 p25-alpha: p25-alpha 95.7 0.086 1.9E-06 36.9 7.5 60 144-203 2-67 (154)
114 KOG4347 GTPase-activating prot 95.7 0.039 8.5E-07 46.4 6.6 77 85-163 535-612 (671)
115 KOG2243 Ca2+ release channel ( 95.7 0.02 4.3E-07 52.2 5.0 57 146-203 4062-4118(5019)
116 KOG1265 Phospholipase C [Lipid 95.4 0.8 1.7E-05 40.5 13.2 119 78-203 158-297 (1189)
117 KOG0042 Glycerol-3-phosphate d 95.3 0.031 6.7E-07 46.4 4.6 62 142-203 594-655 (680)
118 KOG0042 Glycerol-3-phosphate d 95.2 0.056 1.2E-06 45.0 5.9 73 62-134 587-659 (680)
119 KOG3555 Ca2+-binding proteogly 95.2 0.038 8.2E-07 43.0 4.5 60 140-203 249-308 (434)
120 PF09069 EF-hand_3: EF-hand; 94.9 0.34 7.3E-06 30.5 7.4 60 141-203 3-73 (90)
121 KOG0169 Phosphoinositide-speci 94.7 0.33 7.2E-06 41.9 9.1 98 101-203 133-230 (746)
122 PF05042 Caleosin: Caleosin re 94.7 0.16 3.5E-06 35.9 6.1 28 176-203 95-122 (174)
123 PF05517 p25-alpha: p25-alpha 94.3 0.4 8.6E-06 33.5 7.6 62 71-132 2-69 (154)
124 KOG4347 GTPase-activating prot 94.2 0.096 2.1E-06 44.2 5.0 76 121-197 535-610 (671)
125 KOG4578 Uncharacterized conser 93.9 0.028 6.1E-07 43.4 1.3 64 105-168 334-397 (421)
126 KOG3866 DNA-binding protein of 93.8 0.1 2.2E-06 40.2 4.1 59 144-202 247-321 (442)
127 PLN02952 phosphoinositide phos 93.6 1.2 2.5E-05 38.2 10.2 87 81-168 13-109 (599)
128 KOG0035 Ca2+-binding actin-bun 93.5 1.1 2.4E-05 39.8 10.1 64 140-203 746-814 (890)
129 KOG2243 Ca2+ release channel ( 92.6 0.26 5.6E-06 45.6 5.2 58 74-132 4063-4120(5019)
130 KOG4578 Uncharacterized conser 92.3 0.12 2.5E-06 40.2 2.4 63 139-203 331-396 (421)
131 KOG1707 Predicted Ras related/ 92.2 0.39 8.5E-06 40.4 5.5 71 57-133 304-378 (625)
132 PLN02222 phosphoinositide phos 91.1 1 2.2E-05 38.4 6.9 61 141-203 25-88 (581)
133 PLN02228 Phosphoinositide phos 89.7 1.9 4.2E-05 36.7 7.5 65 101-167 21-90 (567)
134 KOG0998 Synaptic vesicle prote 89.5 0.43 9.3E-06 42.7 3.7 131 68-203 11-188 (847)
135 PLN02230 phosphoinositide phos 88.6 2.5 5.4E-05 36.3 7.4 64 139-203 27-100 (598)
136 cd07313 terB_like_2 tellurium 88.4 2.1 4.5E-05 27.5 5.6 83 82-166 13-97 (104)
137 PF14513 DAG_kinase_N: Diacylg 87.7 1.9 4.2E-05 29.5 5.2 71 82-154 5-82 (138)
138 KOG3077 Uncharacterized conser 87.6 11 0.00023 28.8 10.7 109 63-171 59-187 (260)
139 KOG3866 DNA-binding protein of 87.6 1.1 2.5E-05 34.7 4.4 92 72-170 248-355 (442)
140 PF09068 EF-hand_2: EF hand; 87.6 6.7 0.00015 26.4 7.8 27 143-169 99-125 (127)
141 PRK09430 djlA Dna-J like membr 86.7 10 0.00022 29.2 9.2 98 81-186 68-175 (267)
142 KOG1264 Phospholipase C [Lipid 85.6 4 8.7E-05 36.2 7.0 140 63-203 138-291 (1267)
143 PF08976 DUF1880: Domain of un 85.2 0.91 2E-05 29.8 2.4 32 101-132 4-35 (118)
144 TIGR01848 PHA_reg_PhaR polyhyd 85.0 2.3 4.9E-05 27.5 4.1 19 150-168 12-30 (107)
145 KOG4403 Cell surface glycoprot 83.9 5.2 0.00011 32.6 6.5 77 99-179 63-140 (575)
146 KOG0039 Ferric reductase, NADH 83.6 3.1 6.8E-05 36.2 5.7 77 118-202 2-86 (646)
147 PF07879 PHB_acc_N: PHB/PHA ac 83.5 2.2 4.8E-05 24.8 3.2 39 148-186 10-58 (64)
148 PF09069 EF-hand_3: EF-hand; 83.3 9 0.0002 24.1 7.9 62 68-132 3-75 (90)
149 PF11116 DUF2624: Protein of u 82.7 8.1 0.00018 24.0 5.7 31 157-187 14-44 (85)
150 PF07308 DUF1456: Protein of u 81.4 8 0.00017 22.9 5.3 46 85-130 14-59 (68)
151 PLN02223 phosphoinositide phos 80.4 7.9 0.00017 32.8 6.7 64 139-203 14-90 (537)
152 PF02761 Cbl_N2: CBL proto-onc 80.4 11 0.00025 23.3 6.0 52 82-133 20-71 (85)
153 KOG1265 Phospholipase C [Lipid 80.3 26 0.00056 31.7 9.8 84 83-169 198-299 (1189)
154 PLN02228 Phosphoinositide phos 80.1 12 0.00027 32.0 7.8 67 62-130 18-90 (567)
155 PF07308 DUF1456: Protein of u 79.9 6.8 0.00015 23.2 4.6 32 158-189 14-45 (68)
156 PF08726 EFhand_Ca_insen: Ca2+ 79.7 2.1 4.5E-05 25.5 2.4 55 66-128 4-65 (69)
157 PF03672 UPF0154: Uncharacteri 78.3 6.2 0.00013 23.0 3.9 32 82-113 29-60 (64)
158 PLN02222 phosphoinositide phos 78.2 11 0.00024 32.4 7.0 65 66-132 23-90 (581)
159 PTZ00373 60S Acidic ribosomal 77.6 17 0.00038 23.9 6.5 53 71-128 6-58 (112)
160 KOG1785 Tyrosine kinase negati 77.4 27 0.00059 28.4 8.5 85 82-170 188-275 (563)
161 PF08461 HTH_12: Ribonuclease 77.1 5.4 0.00012 23.4 3.7 38 153-190 9-46 (66)
162 KOG2871 Uncharacterized conser 76.9 2.4 5.3E-05 33.8 2.7 66 67-132 308-374 (449)
163 KOG3449 60S acidic ribosomal p 76.3 18 0.0004 23.5 6.4 43 144-186 4-46 (112)
164 PF04876 Tenui_NCP: Tenuivirus 75.2 24 0.00053 24.4 7.4 75 103-186 82-161 (175)
165 PF01023 S_100: S-100/ICaBP ty 75.0 8 0.00017 20.7 3.6 31 66-96 4-36 (44)
166 KOG2301 Voltage-gated Ca2+ cha 74.4 6.9 0.00015 37.7 5.3 72 61-133 1410-1485(1592)
167 PLN02230 phosphoinositide phos 74.1 25 0.00054 30.4 8.1 66 66-132 27-102 (598)
168 KOG2871 Uncharacterized conser 73.8 4.8 0.00011 32.2 3.6 63 138-200 306-369 (449)
169 PF11116 DUF2624: Protein of u 73.4 19 0.00042 22.4 7.0 48 83-130 13-60 (85)
170 PF12174 RST: RCD1-SRO-TAF4 (R 73.2 11 0.00024 22.5 4.2 49 118-170 6-54 (70)
171 COG4103 Uncharacterized protei 72.7 26 0.00056 24.1 6.3 55 145-201 34-90 (148)
172 KOG3449 60S acidic ribosomal p 72.5 16 0.00036 23.7 5.1 55 70-129 3-57 (112)
173 PRK00523 hypothetical protein; 71.6 16 0.00034 21.9 4.5 32 82-113 37-68 (72)
174 COG3763 Uncharacterized protei 70.0 20 0.00044 21.2 4.8 32 82-113 36-67 (71)
175 PF14513 DAG_kinase_N: Diacylg 69.9 20 0.00043 24.6 5.4 34 155-188 46-80 (138)
176 KOG4286 Dystrophin-like protei 69.6 21 0.00045 31.6 6.6 96 69-167 471-578 (966)
177 COG4103 Uncharacterized protei 69.4 34 0.00074 23.5 6.6 94 72-169 34-129 (148)
178 PF12174 RST: RCD1-SRO-TAF4 (R 69.3 4.1 8.8E-05 24.3 1.8 46 155-203 6-51 (70)
179 cd07176 terB tellurite resista 69.0 8.4 0.00018 24.7 3.5 79 82-163 16-99 (111)
180 cd05833 Ribosomal_P2 Ribosomal 68.7 30 0.00065 22.7 6.5 56 72-132 5-60 (109)
181 PF00404 Dockerin_1: Dockerin 67.1 10 0.00023 16.7 2.5 16 78-93 1-16 (21)
182 cd07313 terB_like_2 tellurium 67.1 9.1 0.0002 24.4 3.3 51 117-169 12-65 (104)
183 PRK01844 hypothetical protein; 66.5 17 0.00038 21.7 4.0 32 82-113 36-67 (72)
184 PF06648 DUF1160: Protein of u 66.3 21 0.00045 23.9 4.9 46 138-186 34-80 (122)
185 TIGR02675 tape_meas_nterm tape 65.3 7.1 0.00015 23.6 2.4 14 155-168 28-41 (75)
186 PF05099 TerB: Tellurite resis 65.1 8.8 0.00019 25.9 3.1 89 82-172 37-130 (140)
187 KOG4004 Matricellular protein 64.7 2.9 6.4E-05 30.3 0.7 54 147-202 193-247 (259)
188 PTZ00373 60S Acidic ribosomal 63.8 35 0.00075 22.5 5.5 44 144-187 6-49 (112)
189 PLN02223 phosphoinositide phos 63.3 38 0.00082 28.9 6.9 65 67-132 15-92 (537)
190 PF09336 Vps4_C: Vps4 C termin 60.6 16 0.00034 21.2 3.1 29 84-112 29-57 (62)
191 COG4807 Uncharacterized protei 60.1 51 0.0011 22.3 6.4 91 89-188 20-129 (155)
192 TIGR01639 P_fal_TIGR01639 Plas 60.1 26 0.00055 20.2 4.0 31 156-186 8-38 (61)
193 TIGR01639 P_fal_TIGR01639 Plas 59.8 26 0.00056 20.2 3.9 32 82-113 7-38 (61)
194 PF12419 DUF3670: SNF2 Helicas 59.6 26 0.00055 24.1 4.6 49 154-202 80-138 (141)
195 KOG4403 Cell surface glycoprot 58.1 26 0.00056 28.8 4.9 54 116-169 40-96 (575)
196 TIGR03573 WbuX N-acetyl sugar 57.7 26 0.00057 28.0 5.0 43 155-203 300-342 (343)
197 cd08315 Death_TRAILR_DR4_DR5 D 57.7 47 0.001 21.1 9.6 87 67-183 3-90 (96)
198 PF07499 RuvA_C: RuvA, C-termi 56.9 30 0.00065 18.6 3.8 37 161-201 4-40 (47)
199 PF04558 tRNA_synt_1c_R1: Glut 56.9 67 0.0014 22.8 6.4 49 137-186 81-129 (164)
200 KOG4004 Matricellular protein 56.5 5.2 0.00011 29.1 0.8 47 118-167 202-248 (259)
201 PF04157 EAP30: EAP30/Vps36 fa 56.0 42 0.00091 25.0 5.6 114 67-186 96-214 (223)
202 PF01885 PTS_2-RNA: RNA 2'-pho 55.9 25 0.00054 25.5 4.2 38 151-188 26-63 (186)
203 KOG4070 Putative signal transd 55.1 37 0.0008 23.6 4.6 84 68-151 12-108 (180)
204 PF08461 HTH_12: Ribonuclease 55.0 23 0.0005 20.7 3.3 36 82-117 11-46 (66)
205 cd05833 Ribosomal_P2 Ribosomal 54.9 58 0.0013 21.3 5.4 42 145-186 5-46 (109)
206 PLN00138 large subunit ribosom 54.3 60 0.0013 21.4 5.4 51 73-128 6-56 (113)
207 PF08414 NADPH_Ox: Respiratory 53.5 58 0.0013 20.9 6.4 62 102-169 28-92 (100)
208 PHA02105 hypothetical protein 53.4 41 0.00088 19.1 4.0 47 157-203 4-55 (68)
209 cd04411 Ribosomal_P1_P2_L12p R 53.0 61 0.0013 21.1 7.1 43 85-132 17-59 (105)
210 KOG0506 Glutaminase (contains 52.8 49 0.0011 27.8 5.7 40 144-183 89-128 (622)
211 PF12486 DUF3702: ImpA domain 52.5 41 0.00089 23.4 4.6 35 63-97 64-98 (148)
212 PRK00819 RNA 2'-phosphotransfe 52.0 34 0.00074 24.6 4.3 36 152-187 28-63 (179)
213 PF08414 NADPH_Ox: Respiratory 51.4 63 0.0014 20.8 6.0 40 68-112 30-69 (100)
214 PF13623 SurA_N_2: SurA N-term 51.0 36 0.00078 23.5 4.2 43 161-203 93-145 (145)
215 PF03979 Sigma70_r1_1: Sigma-7 50.7 17 0.00038 22.3 2.4 30 155-186 19-48 (82)
216 cd04411 Ribosomal_P1_P2_L12p R 50.5 68 0.0015 20.8 5.6 29 158-186 17-45 (105)
217 PF12631 GTPase_Cys_C: Catalyt 50.4 26 0.00056 20.9 3.1 46 141-186 23-72 (73)
218 PF09107 SelB-wing_3: Elongati 50.4 24 0.00053 19.4 2.7 30 82-116 8-37 (50)
219 PF09068 EF-hand_2: EF hand; 50.4 76 0.0016 21.4 9.2 85 119-203 13-123 (127)
220 PF10437 Lip_prot_lig_C: Bacte 49.9 24 0.00052 21.7 3.0 43 159-203 43-86 (86)
221 cd07316 terB_like_DjlA N-termi 49.2 66 0.0014 20.3 7.3 82 82-165 13-97 (106)
222 KOG4286 Dystrophin-like protei 49.1 83 0.0018 28.1 6.7 130 69-203 421-578 (966)
223 KOG3077 Uncharacterized conser 48.6 91 0.002 23.9 6.2 75 97-172 57-132 (260)
224 PF02761 Cbl_N2: CBL proto-onc 47.8 67 0.0015 20.0 5.8 64 102-167 5-68 (85)
225 PF09851 SHOCT: Short C-termin 47.5 34 0.00075 16.6 3.4 24 67-96 5-28 (31)
226 PF06648 DUF1160: Protein of u 46.5 53 0.0011 22.0 4.2 50 64-116 33-83 (122)
227 TIGR03798 ocin_TIGR03798 bacte 46.3 40 0.00086 19.5 3.3 25 158-182 25-49 (64)
228 PF07862 Nif11: Nitrogen fixat 45.9 35 0.00075 18.4 2.9 21 159-179 28-48 (49)
229 COG4535 CorC Putative Mg2+ and 45.8 87 0.0019 23.9 5.6 98 83-182 115-239 (293)
230 KOG0506 Glutaminase (contains 44.6 68 0.0015 27.0 5.3 59 73-131 91-157 (622)
231 PF04695 Pex14_N: Peroxisomal 44.5 99 0.0022 21.0 6.0 48 141-190 4-51 (136)
232 TIGR01848 PHA_reg_PhaR polyhyd 44.5 88 0.0019 20.4 5.0 44 75-118 10-63 (107)
233 PF07128 DUF1380: Protein of u 44.0 58 0.0013 22.4 4.2 33 157-189 26-58 (139)
234 KOG4301 Beta-dystrobrevin [Cyt 43.7 1.7E+02 0.0037 23.5 8.5 63 106-170 112-174 (434)
235 COG1460 Uncharacterized protei 43.5 40 0.00087 22.2 3.2 30 158-187 80-109 (114)
236 PRK06402 rpl12p 50S ribosomal 43.3 92 0.002 20.3 5.4 33 153-186 13-45 (106)
237 PLN00138 large subunit ribosom 43.1 97 0.0021 20.5 5.3 41 146-186 6-46 (113)
238 PF11848 DUF3368: Domain of un 42.8 56 0.0012 17.7 3.7 32 155-186 15-47 (48)
239 PRK14981 DNA-directed RNA poly 42.5 57 0.0012 21.4 4.0 28 159-186 80-107 (112)
240 cd07177 terB_like tellurium re 40.7 88 0.0019 19.3 5.3 79 82-165 13-96 (104)
241 TIGR01209 RNA ligase, Pab1020 40.3 1E+02 0.0023 25.1 5.8 50 74-123 163-223 (374)
242 KOG1954 Endocytosis/signaling 40.2 51 0.0011 27.0 3.9 56 142-200 445-500 (532)
243 cd07894 Adenylation_RNA_ligase 40.1 77 0.0017 25.5 5.0 44 73-116 127-183 (342)
244 COG2036 HHT1 Histones H3 and H 38.8 1E+02 0.0022 19.5 5.7 80 86-173 5-87 (91)
245 cd00086 homeodomain Homeodomai 38.5 69 0.0015 17.5 5.5 44 62-112 7-50 (59)
246 PF01885 PTS_2-RNA: RNA 2'-pho 38.5 66 0.0014 23.3 4.1 38 78-115 26-63 (186)
247 KOG2301 Voltage-gated Ca2+ cha 38.5 28 0.00061 33.9 2.7 65 137-202 1413-1481(1592)
248 PF02037 SAP: SAP domain; Int 37.9 56 0.0012 16.3 3.9 19 84-102 3-21 (35)
249 PF02337 Gag_p10: Retroviral G 36.3 42 0.00091 21.2 2.4 12 171-182 22-33 (90)
250 PF05872 DUF853: Bacterial pro 35.6 1E+02 0.0023 25.9 5.2 42 57-98 117-158 (502)
251 PF00690 Cation_ATPase_N: Cati 35.5 61 0.0013 18.8 3.0 31 143-173 6-36 (69)
252 PF04361 DUF494: Protein of un 35.4 1.5E+02 0.0032 20.8 5.3 45 141-187 3-48 (155)
253 KOG0869 CCAAT-binding factor, 34.9 1.6E+02 0.0035 20.7 7.9 85 81-186 29-115 (168)
254 COG5611 Predicted nucleic-acid 34.7 1.4E+02 0.003 19.9 6.0 45 142-186 22-68 (130)
255 COG2818 Tag 3-methyladenine DN 34.5 21 0.00045 25.8 1.0 44 140-183 54-97 (188)
256 smart00874 B5 tRNA synthetase 34.4 97 0.0021 18.0 4.0 17 171-187 16-32 (71)
257 KOG0039 Ferric reductase, NADH 34.3 98 0.0021 27.3 5.2 26 143-168 63-88 (646)
258 smart00513 SAP Putative DNA-bi 33.8 66 0.0014 15.9 4.1 19 84-102 3-21 (35)
259 COG2058 RPP1A Ribosomal protei 33.7 1.4E+02 0.003 19.6 6.1 51 75-131 8-58 (109)
260 TIGR00135 gatC glutamyl-tRNA(G 33.7 1E+02 0.0022 19.2 4.0 28 158-185 1-28 (93)
261 cd03521 Link_domain_KIAA0527_l 33.7 78 0.0017 20.0 3.2 44 73-116 2-46 (95)
262 cd08313 Death_TNFR1 Death doma 33.6 95 0.0021 19.0 3.7 23 158-182 9-31 (80)
263 COG5069 SAC6 Ca2+-binding acti 33.2 1.3E+02 0.0028 25.5 5.3 81 67-151 484-564 (612)
264 PRK00819 RNA 2'-phosphotransfe 33.0 1E+02 0.0022 22.2 4.3 44 78-124 27-70 (179)
265 PF03672 UPF0154: Uncharacteri 32.8 1.1E+02 0.0023 18.0 4.9 42 144-186 19-60 (64)
266 PF12949 HeH: HeH/LEM domain; 32.4 47 0.001 16.8 1.8 19 84-102 3-21 (35)
267 cd00074 H2A Histone 2A; H2A is 31.3 1.6E+02 0.0035 19.5 7.6 48 141-194 57-104 (115)
268 COG5394 Uncharacterized protei 31.1 1E+02 0.0023 21.8 3.9 21 149-169 20-40 (193)
269 PF08044 DUF1707: Domain of un 31.1 1E+02 0.0022 17.2 4.4 30 82-111 21-50 (53)
270 PF09373 PMBR: Pseudomurein-bi 31.1 70 0.0015 15.7 2.3 15 155-169 2-16 (33)
271 PF11829 DUF3349: Protein of u 30.9 1.5E+02 0.0032 19.0 5.1 65 121-186 20-85 (96)
272 PF13623 SurA_N_2: SurA N-term 30.8 1.1E+02 0.0023 21.2 4.0 14 153-166 131-144 (145)
273 PF06384 ICAT: Beta-catenin-in 30.8 86 0.0019 19.2 3.1 22 162-183 21-42 (78)
274 PF12983 DUF3867: Protein of u 30.6 2.1E+02 0.0045 20.6 6.2 55 117-190 33-89 (186)
275 PF12238 MSA-2c: Merozoite sur 30.5 2.3E+02 0.0049 21.0 6.0 87 83-170 26-114 (205)
276 PRK00034 gatC aspartyl/glutamy 30.4 1.3E+02 0.0027 18.8 4.1 29 158-186 3-31 (95)
277 PRK09462 fur ferric uptake reg 30.1 1.7E+02 0.0037 20.0 5.0 41 146-186 22-62 (148)
278 PF03484 B5: tRNA synthetase B 29.9 1.2E+02 0.0025 17.8 3.6 27 159-188 7-33 (70)
279 PF14069 SpoVIF: Stage VI spor 29.6 1.4E+02 0.003 18.3 5.1 43 160-203 30-76 (79)
280 PF00046 Homeobox: Homeobox do 29.5 1E+02 0.0022 16.8 5.4 43 62-111 7-49 (57)
281 KOG1954 Endocytosis/signaling 29.5 1.2E+02 0.0026 24.9 4.5 58 68-128 444-501 (532)
282 cd05831 Ribosomal_P1 Ribosomal 29.4 1.6E+02 0.0035 19.0 5.5 44 82-130 15-58 (103)
283 PF05872 DUF853: Bacterial pro 29.1 1.9E+02 0.0042 24.4 5.7 27 106-132 130-156 (502)
284 PF13551 HTH_29: Winged helix- 29.0 1.5E+02 0.0033 18.6 5.7 52 62-113 58-111 (112)
285 PF10897 DUF2713: Protein of u 28.9 2.4E+02 0.0052 20.8 6.3 42 118-159 175-227 (246)
286 PF13075 DUF3939: Protein of u 28.7 13 0.00029 25.3 -0.7 16 154-169 38-53 (140)
287 PF09312 SurA_N: SurA N-termin 28.7 66 0.0014 21.1 2.6 16 81-96 9-24 (118)
288 cd08316 Death_FAS_TNFRSF6 Deat 28.6 1.6E+02 0.0035 18.8 8.2 78 84-185 17-94 (97)
289 PRK09430 djlA Dna-J like membr 28.5 1.2E+02 0.0027 23.3 4.4 52 117-169 68-120 (267)
290 PF03556 Cullin_binding: Culli 28.4 1.8E+02 0.0039 19.2 4.8 82 115-203 35-116 (117)
291 cd06404 PB1_aPKC PB1 domain is 28.2 1.4E+02 0.0031 18.5 3.7 13 120-132 19-31 (83)
292 cd00076 H4 Histone H4, one of 28.0 1.6E+02 0.0034 18.4 7.2 65 101-173 14-81 (85)
293 PF10281 Ish1: Putative stress 27.6 94 0.002 15.7 2.5 17 159-175 5-21 (38)
294 KOG2525 Folylpolyglutamate syn 27.1 2.2E+02 0.0048 24.1 5.7 111 80-203 46-159 (496)
295 PF09862 DUF2089: Protein of u 27.1 1.4E+02 0.0031 19.7 3.9 24 177-203 89-112 (113)
296 PRK06402 rpl12p 50S ribosomal 26.8 1.9E+02 0.0041 18.9 7.0 42 84-130 16-57 (106)
297 PF13592 HTH_33: Winged helix- 26.6 1.3E+02 0.0028 17.0 3.7 32 156-187 3-35 (60)
298 PRK11511 DNA-binding transcrip 26.5 2E+02 0.0043 19.1 5.8 57 66-132 7-63 (127)
299 PF14848 HU-DNA_bdg: DNA-bindi 25.8 1.7E+02 0.0037 19.5 4.2 32 155-186 26-57 (124)
300 PF13829 DUF4191: Domain of un 25.7 1.6E+02 0.0036 22.0 4.4 37 150-186 160-196 (224)
301 PHA02335 hypothetical protein 25.5 1.7E+02 0.0036 19.1 3.8 31 118-155 22-52 (118)
302 PF10815 ComZ: ComZ; InterPro 25.2 1.4E+02 0.003 16.8 3.4 25 162-186 16-40 (56)
303 PF04157 EAP30: EAP30/Vps36 fa 25.1 2.9E+02 0.0063 20.5 12.9 13 88-100 61-73 (223)
304 TIGR03849 arch_ComA phosphosul 25.0 3.1E+02 0.0068 20.8 7.6 48 154-201 167-221 (237)
305 COG1859 KptA RNA:NAD 2'-phosph 24.3 1.4E+02 0.0031 22.1 3.8 62 117-188 29-90 (211)
306 TIGR01529 argR_whole arginine 24.1 1.8E+02 0.0038 20.1 4.1 34 155-188 14-47 (146)
307 PF08672 APC2: Anaphase promot 23.9 1.3E+02 0.0028 17.2 2.9 12 157-168 32-43 (60)
308 PF02885 Glycos_trans_3N: Glyc 23.9 1.6E+02 0.0034 17.0 5.7 14 100-113 14-27 (66)
309 PF13331 DUF4093: Domain of un 23.9 1.3E+02 0.0027 18.8 3.0 56 120-183 30-86 (87)
310 PF01325 Fe_dep_repress: Iron 23.6 1.5E+02 0.0033 16.8 4.4 46 63-115 3-48 (60)
311 PF15173 FAM180: FAM180 family 23.6 2.5E+02 0.0054 19.2 7.1 64 66-131 27-101 (137)
312 PF01316 Arg_repressor: Argini 23.6 1.7E+02 0.0037 17.4 4.5 32 157-188 19-50 (70)
313 TIGR03573 WbuX N-acetyl sugar 23.6 2.4E+02 0.0052 22.6 5.4 65 90-167 276-342 (343)
314 KOG3341 RNA polymerase II tran 23.2 2.2E+02 0.0048 21.3 4.6 49 143-192 103-155 (249)
315 PF13608 Potyvirid-P3: Protein 23.2 99 0.0022 25.9 3.2 32 66-98 287-318 (445)
316 COG0721 GatC Asp-tRNAAsn/Glu-t 23.2 1.9E+02 0.0042 18.4 3.9 28 157-184 2-29 (96)
317 TIGR03849 arch_ComA phosphosul 22.8 3.5E+02 0.0075 20.6 5.8 49 81-129 167-222 (237)
318 cd07357 HN_L-whirlin_R2_like S 22.8 1.4E+02 0.0031 18.3 3.0 17 154-170 32-48 (81)
319 PRK10945 gene expression modul 22.5 1.9E+02 0.004 17.4 3.6 41 122-170 7-47 (72)
320 PF06627 DUF1153: Protein of u 22.4 2E+02 0.0044 18.1 3.6 32 155-191 47-78 (90)
321 PTZ00015 histone H4; Provision 22.4 2.3E+02 0.005 18.4 7.4 31 143-173 68-98 (102)
322 TIGR03685 L21P_arch 50S riboso 22.4 2.3E+02 0.005 18.4 5.5 34 153-187 13-46 (105)
323 PF15144 DUF4576: Domain of un 22.2 44 0.00095 20.3 0.7 42 154-196 37-78 (88)
324 PF03874 RNA_pol_Rpb4: RNA pol 22.1 1.1E+02 0.0024 19.9 2.8 12 173-184 100-111 (117)
325 PF09412 XendoU: Endoribonucle 21.9 59 0.0013 25.0 1.6 122 64-200 60-185 (265)
326 PF01475 FUR: Ferric uptake re 21.8 2.3E+02 0.0051 18.4 4.3 40 146-186 13-52 (120)
327 PF14932 HAUS-augmin3: HAUS au 21.8 3.7E+02 0.008 20.5 5.9 48 122-170 7-55 (256)
328 PF12875 DUF3826: Protein of u 21.7 99 0.0021 22.4 2.5 38 165-203 85-122 (188)
329 PF03586 Herpes_UL36: Herpesvi 21.5 3.8E+02 0.0082 20.6 5.7 24 109-133 126-149 (253)
330 KOG4422 Uncharacterized conser 21.4 5.1E+02 0.011 22.0 7.0 38 93-130 140-177 (625)
331 PF08100 Dimerisation: Dimeris 21.4 46 0.001 18.4 0.7 37 74-111 12-48 (51)
332 PF12872 OST-HTH: OST-HTH/LOTU 21.3 1.8E+02 0.004 16.8 5.4 35 155-201 21-55 (74)
333 PF10643 Cytochrome-c551: Phot 21.2 2.6E+02 0.0056 20.8 4.5 63 120-186 166-229 (233)
334 KOG2616 Pyridoxalphosphate-dep 21.2 3.7E+02 0.0081 20.3 6.4 59 123-186 104-163 (266)
335 PRK03968 DNA primase large sub 21.0 3.6E+02 0.0078 22.1 5.6 48 79-132 116-163 (399)
336 KOG4301 Beta-dystrobrevin [Cyt 20.9 2.2E+02 0.0047 23.0 4.4 62 70-132 112-173 (434)
337 PRK00441 argR arginine repress 20.9 2.3E+02 0.005 19.7 4.2 33 82-114 16-48 (149)
338 CHL00185 ycf59 magnesium-proto 20.9 2.1E+02 0.0046 22.9 4.3 98 66-174 39-141 (351)
339 PF01498 HTH_Tnp_Tc3_2: Transp 20.8 1.4E+02 0.003 17.3 2.8 32 82-113 11-42 (72)
340 KOG4629 Predicted mechanosensi 20.8 2.5E+02 0.0054 25.2 5.2 55 141-202 404-458 (714)
341 PF04433 SWIRM: SWIRM domain; 20.7 87 0.0019 19.2 1.9 34 149-186 45-78 (86)
342 COG1298 FlhA Flagellar biosynt 20.2 6.3E+02 0.014 22.6 7.4 69 101-169 503-579 (696)
343 PF10982 DUF2789: Protein of u 20.2 2.2E+02 0.0047 17.2 3.4 33 87-119 5-37 (74)
344 PRK08181 transposase; Validate 20.2 2.3E+02 0.005 21.8 4.5 48 82-132 4-51 (269)
345 KOG3423 Transcription initiati 20.1 1.1E+02 0.0023 21.8 2.4 96 68-176 71-171 (176)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.98 E-value=7.8e-31 Score=180.04 Aligned_cols=147 Identities=30% Similarity=0.545 Sum_probs=139.7
Q ss_pred CccCCCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccC
Q 028784 56 LSACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDR 135 (204)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 135 (204)
......++..++++++++|..+|++++|.|+..+|..+++.+|..++.+++.+++..++. +.+.|+|.+|+.++.....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 344455788999999999999999999999999999999999999999999999999999 8899999999999999887
Q ss_pred CCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 136 GDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 136 ~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.....+++..+|+.||.|++|+|+..+|+.+++.+|+.+++++++.+++.+|.|++|.|+|++|++.+
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-28 Score=171.56 Aligned_cols=142 Identities=39% Similarity=0.665 Sum_probs=132.8
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCC---
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGD--- 139 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~--- 139 (204)
+...+.+++++|..||.+++|+|+..||..+++.+|..++..++..++..+|.+++|.|++.+|+.++.........
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999876543333
Q ss_pred -hHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhhC
Q 028784 140 -DEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 140 -~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
.+.++.+|+.||+|++|+||..||+.+|..+|..++.++++.+++.+|.|++|.|+|++|+.+|.
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 45999999999999999999999999999999999999999999999999999999999999873
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.8e-26 Score=152.32 Aligned_cols=146 Identities=30% Similarity=0.499 Sum_probs=138.6
Q ss_pred CCCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCC
Q 028784 59 CEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDG 138 (204)
Q Consensus 59 ~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 138 (204)
...++..+.++++..|..||.+++|+|+.+||+.+++.+|+.+...++..++..+|.++.|.|+|++|...+........
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred CccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 34456777899999999999999999999999999999999999999999999999999999999999999988888778
Q ss_pred ChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhhC
Q 028784 139 DDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 139 ~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
..+++..+|+.+|.|++|.|+..+|+.+.+.+|.+++++++..++..+|.+++|.|+-++|..+|.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999998874
No 4
>PTZ00183 centrin; Provisional
Probab=99.93 E-value=9.5e-24 Score=148.92 Aligned_cols=142 Identities=32% Similarity=0.533 Sum_probs=132.0
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChH
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDE 141 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 141 (204)
.++.++.++..+|..+|.+++|.|+..||..+++.+|..++...+..++..+|.+++|.|+|.+|+.++..........+
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 90 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPRE 90 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHH
Confidence 46778899999999999999999999999999999998889999999999999999999999999998776444445667
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+..+|+.+|.+++|.|+.+||..++..+|..++..++..++..+|.+++|.|+|++|..++
T Consensus 91 ~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999886
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.92 E-value=1.1e-23 Score=147.12 Aligned_cols=142 Identities=31% Similarity=0.604 Sum_probs=131.4
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChH
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDE 141 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 141 (204)
.+...++.++..|..+|.+++|.|+..||..++..++..++...+..++..+|.+++|.|+|++|+.++...........
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~ 84 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEE 84 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHH
Confidence 45678899999999999999999999999999999998889999999999999999999999999999876544344567
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+..+|+.+|.+++|.|+.+||..++..+|..++.+++..++..+|.+++|.|+|+||+.++
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999876
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=1.7e-23 Score=139.76 Aligned_cols=140 Identities=26% Similarity=0.406 Sum_probs=133.3
Q ss_pred CCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCCh
Q 028784 61 PKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDD 140 (204)
Q Consensus 61 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 140 (204)
..++.+|++++++|...|.|++|.|+.++|+.++.++|-.++++++..++.. ..|.|+|--|+.++...+.....+
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdpe 100 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDPE 100 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHH
Confidence 3678899999999999999999999999999999999999999999999987 478999999999999988888889
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhhC
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
+.+..+|+.||.+++|.|..+.|+++|...|..++++|++.+++.+..+..|.|+|..|+.+|.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998863
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=6e-23 Score=134.93 Aligned_cols=141 Identities=25% Similarity=0.432 Sum_probs=127.5
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHhhccC--CC
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTD--GDSLLDFQDFTRMLLKDDR--GD 137 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~i~~~eF~~~~~~~~~--~~ 137 (204)
....+..+++++|..||..++|+|+..+...+|+.+|.++++.++.+.+.....+ .-..|+|++|+.++..... ..
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 3556779999999999999999999999999999999999999999999998877 4478999999999876433 34
Q ss_pred CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 138 GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 138 ~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...+.+...++.||++++|.|...||+++|.++|+.++++|++.++... .|.+|.|+|++|++.+
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 4568889999999999999999999999999999999999999999998 6899999999999875
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.86 E-value=2.3e-20 Score=132.77 Aligned_cols=140 Identities=26% Similarity=0.460 Sum_probs=119.5
Q ss_pred CCCCcchHHHHHHHHhhhcCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCc-ccHHHHHHHHhhccCCC
Q 028784 60 EPKKITKEDELKQVFRHFDGD-GDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSL-LDFQDFTRMLLKDDRGD 137 (204)
Q Consensus 60 ~~~~~~~~~~l~~~f~~~D~~-~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~-i~~~eF~~~~~~~~~~~ 137 (204)
.+.+..++..|...|..+|.+ +.|.|+.+||..+....-.+ ...+++..++.+++|. |+|++|+..+....+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP----LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc----HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 346788999999999999999 99999999999999432222 4566788888877777 99999999999988867
Q ss_pred CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCC--HH----HHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 138 GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKS--YD----ECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 138 ~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~--~~----~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...+++..+|+.||.+++|+|+++|+.+++..+ |...+ ++ .++.+|..+|.++||+|+|+||.+++
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 777899999999999999999999999999997 55555 43 36678999999999999999999876
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=2.9e-19 Score=126.75 Aligned_cols=131 Identities=24% Similarity=0.389 Sum_probs=122.4
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHH
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSI-GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLK 144 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 144 (204)
....+...|...|+++.|.|+.+||+.+|... +-..+.+.++.|+..+|.+.+|.|+|+||..+|... ..++
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr 127 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWR 127 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHH
Confidence 45688999999999999999999999999865 467889999999999999999999999999999875 6799
Q ss_pred HHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 145 KAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 145 ~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+|+.||.|++|.|+..||+++|..+|..++++-.+.+++.+|...+|.|.|++|+..+
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCC 186 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999998889999999999864
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-19 Score=128.14 Aligned_cols=146 Identities=22% Similarity=0.378 Sum_probs=124.5
Q ss_pred ccCCCCCcchHHHHHHHHhhhcCC-CCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhcc
Q 028784 57 SACEPKKITKEDELKQVFRHFDGD-GDGKISALELRAYFGSIGE-YMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDD 134 (204)
Q Consensus 57 ~~~~~~~~~~~~~l~~~f~~~D~~-~~g~i~~~el~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 134 (204)
..+...+....++++..|+.|-.+ .+|.++.++|+.++..+.. .-+......+|+.+|.+++|.|+|.||++.+....
T Consensus 15 e~l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~ 94 (193)
T KOG0044|consen 15 EQLVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS 94 (193)
T ss_pred HHHHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc
Confidence 334446677788888888888777 4899999999999999985 45567789999999999999999999999998866
Q ss_pred CCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh----CC-------CCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 135 RGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL----GD-------SKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 135 ~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~----g~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
+ ....+.+..+|+.||.|++|+|+.+|+.++++.+ |. ...++-++.+|+.+|.|+||.||++||....
T Consensus 95 r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 95 R-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred C-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 5 7778899999999999999999999999999886 32 1234668899999999999999999998764
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.83 E-value=2.2e-19 Score=137.89 Aligned_cols=139 Identities=22% Similarity=0.448 Sum_probs=129.1
Q ss_pred CCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCC
Q 028784 60 EPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEY-MSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDG 138 (204)
Q Consensus 60 ~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 138 (204)
.+...+...+++.+|..+|.+++|.|+..++.+.+..+..+ +..+....++..+|.+.+|.++|+||...+..
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------ 79 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------ 79 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------
Confidence 34456667899999999999999999999999999999877 77888999999999999999999999999975
Q ss_pred ChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhhC
Q 028784 139 DDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 139 ~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
.+.++..+|+.+|.+++|.|+..|+.+.|+++|++++++++.++++.+|+++++.|+++||.++++
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 567899999999999999999999999999999999999999999999999999999999998764
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.58 E-value=4.1e-14 Score=117.51 Aligned_cols=119 Identities=22% Similarity=0.250 Sum_probs=103.0
Q ss_pred CCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHhhccC
Q 028784 60 EPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIG-EYMSYEE---ARAAIDDFDTDGDSLLDFQDFTRMLLKDDR 135 (204)
Q Consensus 60 ~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 135 (204)
......++++++++|..+|++++|.| +..+++.+| ..+++.+ ++.++..+|.+++|.|+|+||+.++... .
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-G 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-c
Confidence 34567788999999999999999997 899999999 5888887 8999999999999999999999999863 3
Q ss_pred CCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHH-------------hCCCCCH-HHHHHHH
Q 028784 136 GDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNR-------------LGDSKSY-DECVAMI 183 (204)
Q Consensus 136 ~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~-------------~g~~~~~-~~~~~~~ 183 (204)
.....+++..+|+.||.|++|.|+.+||.+++.. +|..++. ++++.|+
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~ii 271 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMI 271 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHH
Confidence 3566788999999999999999999999999998 5666665 6666665
No 13
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.52 E-value=5.2e-14 Score=88.66 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhcc-CCCCeeCHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFEL-EKKGCITPKGLQRMLNR-LGDSKSY-DECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D~-~~~G~i~~~el~~~l~~-~g~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...+..+|+.||. +++|+|+..||+.+++. +|..++. ++++.+++.+|.|+||.|+|+||+.+|
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 3568999999999 99999999999999999 8988998 999999999999999999999999876
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.49 E-value=1.8e-13 Score=82.06 Aligned_cols=62 Identities=37% Similarity=0.664 Sum_probs=55.1
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHH----HHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDE----CVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~----~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
++..+|+.+|.|++|+|+.+||..++..++...+..+ +..+++.+|.|++|.|+|+||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999997766544 5555999999999999999999875
No 15
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.7e-13 Score=101.22 Aligned_cols=136 Identities=19% Similarity=0.296 Sum_probs=113.3
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCC----h
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSI-GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGD----D 140 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~----~ 140 (204)
-+.+=++.|+..|.|++|.++.+||..+|.-- ...+..-.|..-+..+|.|++|.|+++||+.-+......... .
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 34555788999999999999999999988754 344667778888999999999999999999988775432111 1
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQ 201 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 201 (204)
.+-...+..+|.|++|+|+.+|+++.+..-+......++..++-..|.|+||++|++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 2344777889999999999999999887777778889999999999999999999999775
No 16
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.46 E-value=7e-13 Score=88.42 Aligned_cols=140 Identities=24% Similarity=0.317 Sum_probs=103.2
Q ss_pred CCCcchHHHHHHHHhhhcCC-------C----CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 028784 61 PKKITKEDELKQVFRHFDGD-------G----DGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRM 129 (204)
Q Consensus 61 ~~~~~~~~~l~~~f~~~D~~-------~----~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 129 (204)
-.+...+-++...|..+.++ + .-.++++.+.++- .+..++ --+++...+..|+.|.++|++|+.+
T Consensus 21 FFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMP-ELkenp---fk~ri~e~FSeDG~GnlsfddFlDm 96 (189)
T KOG0038|consen 21 FFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMP-ELKENP---FKRRICEVFSEDGRGNLSFDDFLDM 96 (189)
T ss_pred cccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhCh-hhhcCh---HHHHHHHHhccCCCCcccHHHHHHH
Confidence 34566666777767665432 1 1234444444332 222222 2345667778899999999999999
Q ss_pred HhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHH----HHHHHHHhCCCCCCceeHHHHHHhhC
Q 028784 130 LLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDE----CVAMIQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 130 ~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~----~~~~~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
+..........-++..+|++||-|+++.|-.++|...+..+ ...++++| ++++++.+|.|+||++++.||.++++
T Consensus 97 fSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 97 FSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 88765545556678899999999999999999999999987 55688877 56789999999999999999998763
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.44 E-value=9.2e-13 Score=83.09 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhc-cCCCC-eeCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFE-LEKKG-CITPKGLQRMLNR-----LGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D-~~~~G-~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...+..+|+.|| .+++| .|+.+||+.+|+. +|...++++++.+++.+|.|++|.|+|++|+.++
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 357899999998 79999 6999999999999 8999999999999999999999999999999876
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.43 E-value=1.7e-12 Score=92.60 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=57.6
Q ss_pred cchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHH
Q 028784 64 ITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDL 143 (204)
Q Consensus 64 ~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 143 (204)
...++.++-+-.+||.+++|+|...||+.+.+.+. ..+.+|+.+|.|+.|+|+..|+...+...-- ....+.+
T Consensus 90 ~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy-~Lspq~~ 162 (221)
T KOG0037|consen 90 PFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN------QWRNVFRTYDRDRSGTIDSSELRQALTQLGY-RLSPQFY 162 (221)
T ss_pred CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH------HHHHHHHhcccCCCCcccHHHHHHHHHHcCc-CCCHHHH
Confidence 34444444455555555555555555554444332 4444555555555555555555544443211 2333444
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc--eeHHHHHH
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGV--LDYHEFSQ 201 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~--i~~~eF~~ 201 (204)
..+++.||..++|.|..++|.+.|..+. -+-+.|+..|.+.+|. |+|++|+.
T Consensus 163 ~~lv~kyd~~~~g~i~FD~FI~ccv~L~------~lt~~Fr~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 163 NLLVRKYDRFGGGRIDFDDFIQCCVVLQ------RLTEAFRRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred HHHHHHhccccCCceeHHHHHHHHHHHH------HHHHHHHHhccccceeEEEeHHHHHH
Confidence 4445555544445555555555444442 2233444444444442 44555543
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.42 E-value=9.4e-13 Score=82.93 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=63.5
Q ss_pred chHHHHHHHHhhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 65 TKEDELKQVFRHFDG-DGDGKISALELRAYFGS-IGEYMSY-EEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 65 ~~~~~l~~~f~~~D~-~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
..+..|..+|+.||+ +++|+|+..||+.+|.+ +|..++. .+++.+++.+|.|++|.|+|.||+.++..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 457889999999999 99999999999999999 9877888 99999999999999999999999998875
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.41 E-value=4.1e-12 Score=99.12 Aligned_cols=136 Identities=18% Similarity=0.335 Sum_probs=109.8
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCC--------
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSI-GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRG-------- 136 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~-------- 136 (204)
...+|...|.++|..++|+|+......++..+ |.+++...+..=+. ..+.+|.|.|.+....+......
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla--~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLA--NGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhcc--CCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 34577889999999999999999999999985 67777665554333 34567899999988766542110
Q ss_pred ---CCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 137 ---DGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL----GDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 137 ---~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~----g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
-.....+..+|+.+|.|++|.|+.+||++.++-+ ..+++++++-++.+.+|.|+||.|++.||++.+
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 0112457889999999999999999999999877 557889999999999999999999999999875
No 21
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=6.7e-12 Score=87.72 Aligned_cols=101 Identities=25% Similarity=0.493 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCC-----CHH
Q 028784 103 YEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSK-----SYD 177 (204)
Q Consensus 103 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~-----~~~ 177 (204)
..++..+|..+|.+++|.|+-.|+..+++.... .....++..++..+|.+++|.|+.++|..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 457889999999999999999999999988544 46789999999999999999999999999999875543 345
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHhhC
Q 028784 178 ECVAMIQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 178 ~~~~~~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
++.++|+.+|.|++|.|+..|+..+|.
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHH
Confidence 999999999999999999999998873
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.38 E-value=2.4e-12 Score=77.16 Aligned_cols=62 Identities=42% Similarity=0.701 Sum_probs=53.5
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028784 69 ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSY----EEARAAIDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 69 ~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~----~~~~~l~~~~d~~~~g~i~~~eF~~~~ 130 (204)
+|+++|..+|.+++|.|+.+||..++..++...+. +.++.+++.+|.+++|.|+|.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999999977655 445555999999999999999998764
No 23
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.38 E-value=3.5e-12 Score=91.14 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccC-------
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDR------- 135 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~------- 135 (204)
......-...+|+.+|.+++|.|+..||..+|..+.-...++-+.+.|+.+|.|++|.|+++|++.++.....
T Consensus 59 ~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~ 138 (193)
T KOG0044|consen 59 DGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKAL 138 (193)
T ss_pred CCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccC
Confidence 3445567788999999999999999999999988877788888999999999999999999999988765311
Q ss_pred ---CCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHH
Q 028784 136 ---GDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 136 ---~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~ 169 (204)
....++....+|+.+|.|++|.||.+||...+..
T Consensus 139 ~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 139 PEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 2335678999999999999999999999998753
No 24
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.37 E-value=4.7e-12 Score=79.86 Aligned_cols=68 Identities=26% Similarity=0.471 Sum_probs=63.2
Q ss_pred chHHHHHHHHhhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 65 TKEDELKQVFRHFD-GDGDG-KISALELRAYFGS-----IGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 65 ~~~~~l~~~f~~~D-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
..+..|.++|..|| ++|+| .|+.+||+.+|+. +|...++.++..+++.+|.+++|.|+|.||+.++..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35788999999998 79999 6999999999999 898899999999999999999999999999988865
No 25
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.35 E-value=3e-11 Score=83.53 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=87.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhC-CCCCHHHHHHH
Q 028784 104 EEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLG-DSKSYDECVAM 182 (204)
Q Consensus 104 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g-~~~~~~~~~~~ 182 (204)
++++..|..+|.+++|.|++.++..+++ ..+.......+..+|..+|. +.|.|+..+|..+|...- -.-+.+++...
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a 97 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA 97 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 4566778889999999999999999998 46667888999999999998 999999999999998763 45568999999
Q ss_pred HHHhCCCCCCceeHHHHHHhhC
Q 028784 183 IQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 183 ~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
|+.||.|++|.|++.+++.+|+
T Consensus 98 F~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 98 FKLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred HHHhCCCCCceecHHHHHHHHH
Confidence 9999999999999999998763
No 26
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.4e-11 Score=92.80 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=111.3
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhcc-------CCC-
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDD-------RGD- 137 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~-------~~~- 137 (204)
...++..++.+.|.+++|.|+..|++..+....-.....+..+-+..+|.+.+|.|+|++++....... ...
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 567899999999999999999999999887655455566777888889999999999999988766421 001
Q ss_pred -----CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 138 -----GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 138 -----~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.....-..-|+.-|.|++|.+|++||..+|..- ...+..-.+..-+...|+|+||.|+++||+.-|
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 112345667899999999999999999999765 335666778888999999999999999998643
No 27
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.32 E-value=1.2e-11 Score=78.01 Aligned_cols=63 Identities=16% Similarity=0.374 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcc-CC-CCeeCHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 141 EDLKKAFEMFEL-EK-KGCITPKGLQRMLNR---LGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 141 ~~l~~~f~~~D~-~~-~G~i~~~el~~~l~~---~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
..+..+|..||. ++ +|+|+.+||+++++. +|..+++++++.+++.+|.|++|.|+|+||+.+|
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 457889999997 66 899999999999974 6999999999999999999999999999999876
No 28
>PTZ00183 centrin; Provisional
Probab=99.32 E-value=6.2e-11 Score=83.33 Aligned_cols=99 Identities=20% Similarity=0.384 Sum_probs=84.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHH
Q 028784 104 EEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAM 182 (204)
Q Consensus 104 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~ 182 (204)
.++..+|..+|.+++|.|++.||..++..... ......+..+|..+|.+++|.|+.+||..++... ......+.++.+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46777899999999999999999999875422 3456789999999999999999999999988764 445567889999
Q ss_pred HHHhCCCCCCceeHHHHHHhh
Q 028784 183 IQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 183 ~~~~d~~~~g~i~~~eF~~~l 203 (204)
|+.+|.+++|.|+++||..++
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l 116 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVA 116 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHH
Confidence 999999999999999999875
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.31 E-value=1.5e-11 Score=78.92 Aligned_cols=64 Identities=19% Similarity=0.406 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcc-CC-CCeeCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFEL-EK-KGCITPKGLQRMLNR-----LGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D~-~~-~G~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...+..+|..||. |+ +|.|+.+||+.+++. +|..+++++++.+++.+|.+++|.|+|++|+.++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 3568999999997 87 699999999999986 5778899999999999999999999999999876
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.29 E-value=2.2e-11 Score=77.85 Aligned_cols=64 Identities=27% Similarity=0.471 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhc-cCCCC-eeCHHHHHHHHHH-hCC----CCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFE-LEKKG-CITPKGLQRMLNR-LGD----SKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D-~~~~G-~i~~~el~~~l~~-~g~----~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+.++.+|+.|| .+++| .|+..||+.+|+. +|. ..++++++.+++.+|.+++|.|+|++|+.++
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 467999999997 99999 5999999999986 543 5689999999999999999999999999876
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.29 E-value=2.2e-11 Score=77.81 Aligned_cols=63 Identities=17% Similarity=0.329 Sum_probs=55.6
Q ss_pred HHHHHHHHHhc-cCCCC-eeCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 141 EDLKKAFEMFE-LEKKG-CITPKGLQRMLNRL-----GDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 141 ~~l~~~f~~~D-~~~~G-~i~~~el~~~l~~~-----g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
..+..+|+.|| .|++| .|+.+||+.++... +...++.+++.+++.+|.|++|.|+|+||+.+|
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 56788999999 78998 59999999999773 344578899999999999999999999999886
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.27 E-value=2.5e-11 Score=69.65 Aligned_cols=50 Identities=40% Similarity=0.658 Sum_probs=47.7
Q ss_pred CCCeeCHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 154 KKGCITPKGLQRMLNRLGDS-KSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 154 ~~G~i~~~el~~~l~~~g~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+|.|+.++|+.+|..+|.. ++++++..++..+|.+++|.|+|+||+.+|
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 37999999999999888999 999999999999999999999999999987
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.25 E-value=5.2e-11 Score=75.13 Aligned_cols=69 Identities=23% Similarity=0.438 Sum_probs=62.4
Q ss_pred cchHHHHHHHHhhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 64 ITKEDELKQVFRHFDG-DG-DGKISALELRAYFGS---IGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 64 ~~~~~~l~~~f~~~D~-~~-~g~i~~~el~~~l~~---~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
...+..|..+|..||. +| +|+|+.+||+.++.. +|..++.+++..+++.+|.+++|.|+|+||+.++..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 3467788999999998 67 899999999999973 689999999999999999999999999999988875
No 34
>PTZ00184 calmodulin; Provisional
Probab=99.25 E-value=2.2e-10 Score=79.62 Aligned_cols=99 Identities=23% Similarity=0.420 Sum_probs=83.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHH
Q 028784 104 EEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAM 182 (204)
Q Consensus 104 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~ 182 (204)
+.+...|..+|.+++|.|++.+|..++..... ....+.+..+|+.+|.+++|.|+.++|..++... ........+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 45667888899999999999999998865322 3446789999999999999999999999998765 334566778999
Q ss_pred HHHhCCCCCCceeHHHHHHhh
Q 028784 183 IQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 183 ~~~~d~~~~g~i~~~eF~~~l 203 (204)
|+.+|.+++|.|+.++|..++
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l 110 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVM 110 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHH
Confidence 999999999999999998775
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.23 E-value=3.6e-11 Score=72.12 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=54.1
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
+.+|+.+|++++|.|+.+|+..++..+| ++.+++..++..+|.+++|.|+|++|+.++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 5689999999999999999999999987 489999999999999999999999999876
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=7.5e-11 Score=75.99 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=63.5
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
.+..++..++.+|..+|.+++|.|+.+|++.+++..| ++..++..++..+|.+++|.|+|+||+.++..
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 3567889999999999999999999999999999976 68899999999999999999999999998865
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=6.9e-11 Score=76.15 Aligned_cols=63 Identities=22% Similarity=0.359 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 139 DDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 139 ~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
....+..+|+.+|.+++|.|+.+|+..+++..| +++++++.++..+|.+++|.|+|++|+.++
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 346789999999999999999999999999876 789999999999999999999999999876
No 38
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.22 E-value=8.1e-11 Score=75.51 Aligned_cols=67 Identities=19% Similarity=0.411 Sum_probs=60.7
Q ss_pred hHHHHHHHHhhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 66 KEDELKQVFRHFDG-DG-DGKISALELRAYFGS-----IGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 66 ~~~~l~~~f~~~D~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
....+..+|..||. ++ +|.|+.+||+.+|.. +|..++..++..++..+|.+++|.|+|.+|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46789999999997 87 699999999999986 567889999999999999999999999999988765
No 39
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.21 E-value=1e-10 Score=74.73 Aligned_cols=69 Identities=22% Similarity=0.405 Sum_probs=59.9
Q ss_pred cchHHHHHHHHhhhc-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 64 ITKEDELKQVFRHFD-GDGDG-KISALELRAYFGS-I----GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 64 ~~~~~~l~~~f~~~D-~~~~g-~i~~~el~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
...+..+.++|..|| .+|+| .|+..||+.++.. + ....+..++..++..+|.+++|.|+|.||+.++..
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 345788999999999 78998 5999999999977 3 34457889999999999999999999999998876
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.21 E-value=6.2e-11 Score=75.15 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcc--CCCCeeCHHHHHHHHHH-hCCCC----CHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFEL--EKKGCITPKGLQRMLNR-LGDSK----SYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D~--~~~G~i~~~el~~~l~~-~g~~~----~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+.+..+|..||. +++|.|+.+||..+++. +|..+ ++++++.++..+|.+++|.|+|++|+.++
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 4568899999999 89999999999999986 56544 59999999999999999999999999876
No 41
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=1.1e-10 Score=74.56 Aligned_cols=68 Identities=25% Similarity=0.471 Sum_probs=60.3
Q ss_pred chHHHHHHHHhhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 65 TKEDELKQVFRHFD-GDGDG-KISALELRAYFGS-IG----EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 65 ~~~~~l~~~f~~~D-~~~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
..+..++++|..|| .+++| .|+..||+.+|+. +| ..++..+++.++..+|.+++|.|+|.+|+.++..
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 34678999999997 99999 5999999999985 54 3568999999999999999999999999998865
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=99.20 E-value=1.2e-10 Score=97.25 Aligned_cols=118 Identities=13% Similarity=0.196 Sum_probs=90.7
Q ss_pred CCcccHHHHHHHHHHhCCCCC---HHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChH---HHHHHHHHhccCCC
Q 028784 82 DGKISALELRAYFGSIGEYMS---YEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDE---DLKKAFEMFELEKK 155 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~---~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~---~l~~~f~~~D~~~~ 155 (204)
...++.+++...+..--..++ .+++.+.|..+|.+++|.+ ....+..+.. ...... .+..+|+.+|.|++
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~---~~pte~e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSI---EDPVETERSFARRILAIVDYDED 193 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCC---CCCCHHHHHHHHHHHHHhCCCCC
Confidence 347788887766653111222 3567778899999999987 3333333221 122333 38999999999999
Q ss_pred CeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 156 GCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 156 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
|.|+.+||..++..++...+++++..+|+.+|.|++|.|+++||.++|
T Consensus 194 G~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL 241 (644)
T PLN02964 194 GQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALL 241 (644)
T ss_pred CeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 999999999999999988899999999999999999999999999876
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.18 E-value=2.3e-10 Score=67.10 Aligned_cols=62 Identities=37% Similarity=0.688 Sum_probs=58.5
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhhC
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
+..+|..+|.+++|.|+.+|+..+++.++...+.+++..++..+|.+++|.|++++|+.++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhC
Confidence 56789999999999999999999999999999999999999999999999999999998763
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.17 E-value=1.7e-10 Score=73.19 Aligned_cols=69 Identities=22% Similarity=0.434 Sum_probs=61.3
Q ss_pred cchHHHHHHHHhhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 64 ITKEDELKQVFRHFDG--DGDGKISALELRAYFGS-IGEY----MSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 64 ~~~~~~l~~~f~~~D~--~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
..++..++.+|..+|. +++|.|+.++|..+++. +|.. ++..++..++..+|.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3467889999999999 89999999999999986 5544 45899999999999999999999999998875
No 45
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=2.6e-10 Score=72.01 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=56.2
Q ss_pred hHHHHHHHHH-hccCCCC-eeCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEM-FELEKKG-CITPKGLQRMLNRL-----GDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~-~D~~~~G-~i~~~el~~~l~~~-----g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...+..+|+. +|.+++| .|+.+||+.++... +...++.+++.+++.+|.|+||.|+|+||+.+|
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 3568899999 6787876 99999999999886 445678999999999999999999999999876
No 46
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.13 E-value=3.1e-10 Score=68.00 Aligned_cols=60 Identities=37% Similarity=0.484 Sum_probs=55.5
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 71 KQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 71 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
+++|..+|.+++|.|+.+|+..++..+|. +..++..++..++.+++|.|+|.||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57899999999999999999999999874 8889999999999999999999999998765
No 47
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.11 E-value=6.8e-10 Score=79.38 Aligned_cols=100 Identities=20% Similarity=0.368 Sum_probs=85.2
Q ss_pred HHHHhhhcCCCCCc-ccHHHHHHHHHHhCCCCCHH-HHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCC------hHH
Q 028784 71 KQVFRHFDGDGDGK-ISALELRAYFGSIGEYMSYE-EARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGD------DED 142 (204)
Q Consensus 71 ~~~f~~~D~~~~g~-i~~~el~~~l~~~~~~~~~~-~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~------~~~ 142 (204)
.+++..++.+++|. |+.++|...+..+...-+.. .++-.|+.+|.+++|.|+.+|+..++......... ...
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 56778888988888 99999999999987666665 89999999999999999999999988876553222 355
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHHHHHh
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRMLNRL 170 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~l~~~ 170 (204)
+...|..+|.|++|.|+.+|+++++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 7889999999999999999999998653
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.10 E-value=4.3e-10 Score=64.44 Aligned_cols=52 Identities=37% Similarity=0.641 Sum_probs=48.7
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 81 GDGKISALELRAYFGSIGEY-MSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 81 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
.+|.|+.++|+.+|..+|.. ++++++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888999 99999999999999999999999999998864
No 49
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=4.3e-09 Score=71.65 Aligned_cols=99 Identities=19% Similarity=0.324 Sum_probs=85.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHH
Q 028784 104 EEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAM 182 (204)
Q Consensus 104 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~ 182 (204)
.+++..|..++.++.|.|+++|+...++.. ......+++..+..-+|++++|.|+.++|+.++... |+.-+.+++...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmral-GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRAL-GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 678889999999999999999996555542 224556788999999999999999999999997764 777799999999
Q ss_pred HHHhCCCCCCceeHHHHHHhh
Q 028784 183 IQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 183 ~~~~d~~~~g~i~~~eF~~~l 203 (204)
|+.+|.|++|.||+.+|..+.
T Consensus 112 frl~D~D~~Gkis~~~lkrva 132 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVA 132 (172)
T ss_pred HHcccccCCCCcCHHHHHHHH
Confidence 999999999999999998764
No 50
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.06 E-value=8.6e-10 Score=72.92 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 139 DDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 139 ~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
....+..+|..+|.|++|.|+.+||..+. ....+..+..+++.+|.|++|.||++||...+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34678999999999999999999999876 23457788999999999999999999999876
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.05 E-value=1.3e-09 Score=63.86 Aligned_cols=61 Identities=48% Similarity=0.780 Sum_probs=57.3
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028784 70 LKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 70 l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 130 (204)
+..+|..+|.+++|.|+..|+..++..++...+.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998765
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.05 E-value=1.8e-09 Score=68.19 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=59.9
Q ss_pred cchHHHHHHHHhh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 64 ITKEDELKQVFRH-FDGDGDG-KISALELRAYFGSI-----GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 64 ~~~~~~l~~~f~~-~D~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
...+..|..+|.. +|.+|+| .|+.+||+.++... +....+.++..+++.+|.|++|.|+|+||+.++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3467889999999 7788876 99999999999885 34567899999999999999999999999988765
No 53
>PF14658 EF-hand_9: EF-hand domain
Probab=99.03 E-value=1.2e-09 Score=63.81 Aligned_cols=60 Identities=25% Similarity=0.473 Sum_probs=56.3
Q ss_pred HHHHHhccCCCCeeCHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-CceeHHHHHHhhC
Q 028784 145 KAFEMFELEKKGCITPKGLQRMLNRLGD-SKSYDECVAMIQVFDTDGN-GVLDYHEFSQMMA 204 (204)
Q Consensus 145 ~~f~~~D~~~~G~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l~ 204 (204)
.+|..||+++.|.|...++..+|+..+. ..++.+++.+.+.+|+++. |.|++++|...|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 3799999999999999999999999988 8999999999999999998 9999999998873
No 54
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.03 E-value=2e-09 Score=84.26 Aligned_cols=132 Identities=20% Similarity=0.327 Sum_probs=100.8
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHhC-CCCC--HHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHH
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYFGSIG-EYMS--YEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDL 143 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~--~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 143 (204)
++-++--|..+|+..+|.|+..+|..+|-..- .+.. ...++++.+.+..+ +..|+++||..+.... .....+
T Consensus 317 ~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl----~~l~df 391 (489)
T KOG2643|consen 317 EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFL----NNLNDF 391 (489)
T ss_pred HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHH----hhhhHH
Confidence 44556668888888888999999888776553 2221 23566667777665 5569999999887763 444566
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhhC
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 204 (204)
..|...|-. ..+.|+..+|+++.... |+.+++..++.+|..||.|+||.++++||+.+|.
T Consensus 392 d~Al~fy~~-Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 392 DIALRFYHM-AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMK 452 (489)
T ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHH
Confidence 666666653 35689999999988875 9999999999999999999999999999999873
No 55
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.02 E-value=1.2e-09 Score=69.02 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhccC--CCCeeCHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFELE--KKGCITPKGLQRMLN-RLGDSKS----YDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D~~--~~G~i~~~el~~~l~-~~g~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...+...|+.|+.. ++|.|+.+||+.++. .+|..++ +++++.++..+|.+++|.|+|++|+.++
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 35678899999866 478999999999997 5676676 9999999999999999999999999876
No 56
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.00 E-value=6.8e-09 Score=91.44 Aligned_cols=134 Identities=18% Similarity=0.354 Sum_probs=109.4
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCC--CH-----HHHHHHHHhhCCCCCCcccHHHHHHHHhhcc
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYM--SY-----EEARAAIDDFDTDGDSLLDFQDFTRMLLKDD 134 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~--~~-----~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 134 (204)
.+.....++.-+|..||.+.+|.++..+|+.+|+++|..+ .+ .++..++..+|++.+|.|+..+|+.+|...-
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 5677889999999999999999999999999999999655 23 4899999999999999999999999987642
Q ss_pred -CCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC--------CCCceeHHHHHHhh
Q 028784 135 -RGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTD--------GNGVLDYHEFSQMM 203 (204)
Q Consensus 135 -~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~l 203 (204)
.+....+++..+|+.+|. +.-+|+.+++.+- +|.++++..+..+-+- -.+.+.|.+|++.|
T Consensus 2327 TeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2327 TENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 234556799999999998 7779999998775 5777777665554322 23458999999865
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.96 E-value=4.4e-09 Score=69.54 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=56.6
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLL 131 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 131 (204)
.......+...|..+|.|++|.|+.+||..++ ....+..+..++..+|.+++|.|++.||..++.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34577889999999999999999999999876 345578889999999999999999999999883
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=98.96 E-value=4e-09 Score=61.59 Aligned_cols=60 Identities=20% Similarity=0.460 Sum_probs=57.2
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHhh
Q 028784 73 VFRHFDGDGDGKISALELRAYFGSIGE-YMSYEEARAAIDDFDTDGD-SLLDFQDFTRMLLK 132 (204)
Q Consensus 73 ~f~~~D~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~i~~~eF~~~~~~ 132 (204)
+|..||.++.|.|...++..+|+.++. .+.+.+++.+...+|.++. |.|+|+.|+..|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 689999999999999999999999987 9999999999999999988 99999999999875
No 59
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.94 E-value=1.1e-08 Score=72.27 Aligned_cols=110 Identities=21% Similarity=0.372 Sum_probs=88.7
Q ss_pred ccCCCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCC
Q 028784 57 SACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRG 136 (204)
Q Consensus 57 ~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 136 (204)
......++.+|+.+..+|..+|.+.+|+|+..||+.+|.++|.+-+---++.++..+|.|.+|.|+|.||+-+++.....
T Consensus 88 teF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaag 167 (244)
T KOG0041|consen 88 TEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG 167 (244)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc
Confidence 44456788899999999999999999999999999999999999999999999999999999999999999888775432
Q ss_pred C-CChHHHHHHHHH--hccCCCCeeCHHHHHHH
Q 028784 137 D-GDDEDLKKAFEM--FELEKKGCITPKGLQRM 166 (204)
Q Consensus 137 ~-~~~~~l~~~f~~--~D~~~~G~i~~~el~~~ 166 (204)
. .....+..+-+. .|...-|+.-...|-++
T Consensus 168 EL~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 168 ELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred ccccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 2 222334444444 68777787776666553
No 60
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.94 E-value=1.3e-08 Score=80.42 Aligned_cols=128 Identities=16% Similarity=0.337 Sum_probs=100.8
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHhhccCCCCChHHHHH
Q 028784 70 LKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDD----FDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKK 145 (204)
Q Consensus 70 l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~----~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 145 (204)
+.-.|..+|.|.+|.|+.++|..... ..++...++++|.. .-...+|.++|++|+.++..... .....-+..
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~-k~t~~SleY 355 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED-KDTPASLEY 355 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc-CCCccchhh
Confidence 34447888999999999999997665 45668889999993 33346889999999999877433 566678999
Q ss_pred HHHHhccCCCCeeCHHHHHHHHHHh-------C-CCCC-HHHHHHHHHHhCCCCCCceeHHHHHH
Q 028784 146 AFEMFELEKKGCITPKGLQRMLNRL-------G-DSKS-YDECVAMIQVFDTDGNGVLDYHEFSQ 201 (204)
Q Consensus 146 ~f~~~D~~~~G~i~~~el~~~l~~~-------g-~~~~-~~~~~~~~~~~d~~~~g~i~~~eF~~ 201 (204)
.|+.+|.+++|.|+..|++-+.+.. | +.+. ++.+.+|+..+.+...++|++++|..
T Consensus 356 wFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 356 WFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred heeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 9999999999999999998887764 2 1233 45567788888778889999999975
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.91 E-value=6.9e-09 Score=65.57 Aligned_cols=68 Identities=16% Similarity=0.389 Sum_probs=59.6
Q ss_pred chHHHHHHHHhhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 65 TKEDELKQVFRHFDGD--GDGKISALELRAYFG-SIGEYMS----YEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 65 ~~~~~l~~~f~~~D~~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
..+..+..+|..|+.. .+|.|+.+||+.+|. .++..++ ..++..++..+|.+++|.|+|++|+.++..
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4577889999999866 479999999999997 5666666 899999999999999999999999998865
No 62
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.88 E-value=3.5e-08 Score=77.42 Aligned_cols=133 Identities=22% Similarity=0.319 Sum_probs=97.3
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHH------hCC--------CCC-HHHHHH--HHHhhCCCCCCcccHHHHH
Q 028784 65 TKEDELKQVFRHFDGDGDGKISALELRAYFGS------IGE--------YMS-YEEARA--AIDDFDTDGDSLLDFQDFT 127 (204)
Q Consensus 65 ~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~------~~~--------~~~-~~~~~~--l~~~~d~~~~g~i~~~eF~ 127 (204)
.....++-+|.+||.||||.|+.+||..++.- +|. ..+ ..++.. ...-+..++++.+++++|+
T Consensus 230 ~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~ 309 (489)
T KOG2643|consen 230 IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFL 309 (489)
T ss_pred cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHH
Confidence 34466788899999999999999999887743 221 001 112222 2233578899999999999
Q ss_pred HHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHH--HHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 128 RMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYD--ECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 128 ~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~--~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.++... +.+.+..-|..+|+..+|.|+..+|..+|-.+ +.+.... ..+.+-+.++.+ +-.||++||..+.
T Consensus 310 ~F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 310 KFQENL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFF 382 (489)
T ss_pred HHHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHH
Confidence 999874 45778889999999999999999999988776 4333332 355667777554 5569999998764
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.83 E-value=1.6e-08 Score=71.38 Aligned_cols=75 Identities=24% Similarity=0.460 Sum_probs=65.4
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHh
Q 028784 123 FQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQM 202 (204)
Q Consensus 123 ~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 202 (204)
|.+|-.+-+ .....+..+|+.||.+.+|+|+..||+.+|..+|.+-|---++.+++..|.|.+|+|+|.+|+-+
T Consensus 87 yteF~eFsr------kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 87 YTEFSEFSR------KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred hhhhhHHHH------HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 566664433 24467899999999999999999999999999999999889999999999999999999999865
Q ss_pred h
Q 028784 203 M 203 (204)
Q Consensus 203 l 203 (204)
+
T Consensus 161 f 161 (244)
T KOG0041|consen 161 F 161 (244)
T ss_pred H
Confidence 3
No 64
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.78 E-value=5.1e-08 Score=66.05 Aligned_cols=70 Identities=24% Similarity=0.452 Sum_probs=64.2
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
.....+.|..+|..||.+++|.|..+.|+.+|...|..+++++|..+++.+-.+..|.|+|..|+..+..
T Consensus 96 gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 96 GTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred CCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 3455788999999999999999999999999999999999999999999999999999999999999874
No 65
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=1.7e-07 Score=58.76 Aligned_cols=62 Identities=15% Similarity=0.344 Sum_probs=53.1
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRL-----GDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-----g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
..+..+|..|. .+.+.|+..||+.++..- +..-++..++.+|+..|.|+||.|+|.||+.++
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 45788999998 446799999999999773 445578899999999999999999999999875
No 66
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.67 E-value=7.4e-08 Score=70.30 Aligned_cols=66 Identities=23% Similarity=0.373 Sum_probs=50.6
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHHh-C--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028784 65 TKEDELKQVFRHFDGDGDGKISALELRAYFGSI-G--EYMSYEEARAAIDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 65 ~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~-~--~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 130 (204)
...+.|..+|.+.|.|.+|+|+..|++..+..- . +.-+..+-+-.|+..|.+++|.|+++||.--+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 456788999999999999999999998866542 1 22233455667888999999999999997433
No 67
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.64 E-value=5.2e-07 Score=70.58 Aligned_cols=96 Identities=20% Similarity=0.300 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHH
Q 028784 103 YEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAM 182 (204)
Q Consensus 103 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 182 (204)
+..++.+|..+|.+++|.|+..+....+..........+....+|+..|.|.+|.++.+||++.+.. .+.++..+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 4568899999999999999999999887776554567788999999999999999999999999864 67788899
Q ss_pred HHHhCCCCCCceeHHHHHHhh
Q 028784 183 IQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 183 ~~~~d~~~~g~i~~~eF~~~l 203 (204)
|+..|.+.||.|+.+|.-+.+
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l 108 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYL 108 (463)
T ss_pred HhhhccccCCccCHHHHHHHH
Confidence 999999999999999876654
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.64 E-value=6.5e-08 Score=47.51 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=18.1
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHHHHH
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~l~~ 169 (204)
+..+|+.||+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 556667777777777777777666654
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.63 E-value=5.3e-08 Score=47.84 Aligned_cols=29 Identities=48% Similarity=0.827 Sum_probs=22.6
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHh
Q 028784 69 ELKQVFRHFDGDGDGKISALELRAYFGSI 97 (204)
Q Consensus 69 ~l~~~f~~~D~~~~g~i~~~el~~~l~~~ 97 (204)
+++++|+.+|+|++|+|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46778888888888888888888887754
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.62 E-value=5e-07 Score=56.63 Aligned_cols=67 Identities=15% Similarity=0.291 Sum_probs=57.0
Q ss_pred chHHHHHHHHhhhcCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 65 TKEDELKQVFRHFDGDGDGKISALELRAYFGS-----IGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 65 ~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
..+..|..+|..|..+ .+.|+..||+.++.+ +...-.+..+..+++.+|.++||.|+|.||+.++..
T Consensus 5 ~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 5 HSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3577889999999854 569999999999975 244556899999999999999999999999998865
No 71
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.61 E-value=1.7e-07 Score=62.47 Aligned_cols=68 Identities=22% Similarity=0.480 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLL 131 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 131 (204)
.+-.-+.+.+.++.||++++|.|...||+.+|..+|..+++.++..++... .|.+|.|+|+.|+..+.
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 444567888899999999999999999999999999999999999999886 56789999999997653
No 72
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.52 E-value=2.1e-07 Score=46.66 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=25.8
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHH-HhC
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLN-RLG 171 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~-~~g 171 (204)
++..+|+.||.|++|.|+.+||.++|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 73
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.50 E-value=2.7e-06 Score=71.40 Aligned_cols=136 Identities=18% Similarity=0.324 Sum_probs=115.5
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHH
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDED 142 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 142 (204)
......-+..+|...|.+++|.++..+...++..++..+....+..+++..+..+++.+...+|..+..... ...+
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~----~rpe 206 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT----KRPE 206 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc----cCch
Confidence 334456678899999999999999999999999999999999999999999988999999999999877642 2237
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCC----CCCceeHHHHHHhh
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRMLNRLG--DSKSYDECVAMIQVFDTD----GNGVLDYHEFSQMM 203 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l 203 (204)
+..+|..+-.+ .+.++.++|..+|...+ .+.+.+.+++|++.+... ..+.++++.|.++|
T Consensus 207 v~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL 272 (746)
T KOG0169|consen 207 VYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYL 272 (746)
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHh
Confidence 88888888755 88999999999999983 367889999999888544 45669999999987
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.47 E-value=2.4e-07 Score=46.39 Aligned_cols=30 Identities=50% Similarity=0.813 Sum_probs=26.3
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHH-HhC
Q 028784 69 ELKQVFRHFDGDGDGKISALELRAYFG-SIG 98 (204)
Q Consensus 69 ~l~~~f~~~D~~~~g~i~~~el~~~l~-~~~ 98 (204)
+++.+|..+|.+++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 565
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.37 E-value=3.4e-06 Score=54.71 Aligned_cols=68 Identities=26% Similarity=0.410 Sum_probs=59.6
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
++..+...+..+|..+|. ++|.|+.++.+.++.+.+ ++...+..+|...|.+++|.+++.||+-.+..
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 467788999999999985 589999999999998876 77899999999999999999999999987764
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.36 E-value=1.5e-06 Score=69.55 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=90.0
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHhC------CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChH
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAYFGSIG------EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDE 141 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~------~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 141 (204)
.....+|..||+.++|.++.+++..++.+.. +..+.+-++..| ..+....++|.+|..++... ..+
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~-----~~E 179 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEF-----QLE 179 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHH-----HHH
Confidence 4456788888998889999999888887753 233344444433 33445578889988888763 346
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhC-CCCCCceeHHHHHH
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFD-TDGNGVLDYHEFSQ 201 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~~~g~i~~~eF~~ 201 (204)
...++|+..|+.++|.|+.-++..++.....++....++..+-..- .+....+|+..|..
T Consensus 180 ~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 180 HAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred HHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 6899999999999999999999999988877666666666554443 33334577666643
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.34 E-value=2.1e-05 Score=63.20 Aligned_cols=103 Identities=16% Similarity=0.291 Sum_probs=76.2
Q ss_pred chHHHHHHHHhhh---cCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHh-hCCCCCCcccHHHHHHHHhhccCCCCC
Q 028784 65 TKEDELKQVFRHF---DGDGDGKISALELRAYFGS-IGEYMSYEEARAAIDD-FDTDGDSLLDFQDFTRMLLKDDRGDGD 139 (204)
Q Consensus 65 ~~~~~l~~~f~~~---D~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~l~~~-~d~~~~g~i~~~eF~~~~~~~~~~~~~ 139 (204)
.+-.+|+.+|-.+ +.++.-.++.++|....-- ++..-...++..++.. .|..+||.|+|+||+.+=...+ ..
T Consensus 30 a~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~p 106 (694)
T KOG0751|consen 30 ADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---AP 106 (694)
T ss_pred CChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---Cc
Confidence 3445666666554 6778889999998765443 4555555555555554 5677899999999998754432 44
Q ss_pred hHHHHHHHHHhccCCCCeeCHHHHHHHHHHh
Q 028784 140 DEDLKKAFEMFELEKKGCITPKGLQRMLNRL 170 (204)
Q Consensus 140 ~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~ 170 (204)
......+|+.||..++|.++.+++.+++...
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 6678899999999999999999999999876
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.33 E-value=2.9e-06 Score=46.80 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 84 KISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 84 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
.++..|++.+|+.+++.+++..+..+|+.+|.+++|.+..+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999998764
No 79
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.31 E-value=9.6e-07 Score=67.05 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=80.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHH
Q 028784 104 EEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAM 182 (204)
Q Consensus 104 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~ 182 (204)
..+..+|..+|.+++|.++|.|.+..+...+.-......+..+|+.|+.+-+|.+..++|--+|+.. | +..-.+-.+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecccc
Confidence 5678889999999999999999988887766656667889999999999999999999998888774 4 333445567
Q ss_pred HHHhCCCCCCceeHHHHHHhh
Q 028784 183 IQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 183 ~~~~d~~~~g~i~~~eF~~~l 203 (204)
+...+...+|+|+|++|.+++
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred chhhhcccCcceeHHHHHHHH
Confidence 888888889999999998875
No 80
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.31 E-value=4.5e-06 Score=66.67 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 137 DGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 137 ~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
......+..+|+.+|.+++|.|+.+||.. ++.+|..+|.|++|.|+++||...+
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 34457899999999999999999999942 5789999999999999999999876
No 81
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.29 E-value=3.2e-06 Score=66.85 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=59.0
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhc
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAYFGSI----GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKD 133 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 133 (204)
..|..+|+..|.|++|.|+.+||+.+..-+ +..++..++.++.+.+|.++||.|++.||++.++..
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 467889999999999999999999988765 467889999999999999999999999999988763
No 82
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.28 E-value=6.5e-06 Score=53.39 Aligned_cols=63 Identities=21% Similarity=0.406 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 138 GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 138 ~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
........+|+.+|. ++|.|+.++.+.++..-| ++.+.+..|+..+|.+++|.++++||+-.|
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 345678889999985 689999999999998777 788999999999999999999999998765
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.25 E-value=4.8e-06 Score=45.96 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=37.6
Q ss_pred eeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 157 CITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 157 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.++..|++.+|+.+.+.+++.-+..+|+.+|.+++|.+.-+||..+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 36788999999999999999999999999999999999999988764
No 84
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.25 E-value=8.7e-06 Score=54.88 Aligned_cols=98 Identities=22% Similarity=0.360 Sum_probs=76.4
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHH----HHHH
Q 028784 73 VFRHFDGDGDGKISALELRAYFGSIG-EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDL----KKAF 147 (204)
Q Consensus 73 ~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l----~~~f 147 (204)
+...|..||.|-++.++|..++.-+. ..+..-.+...|+-+|-|+++.|.-++....+..........+++ .++.
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvi 155 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVI 155 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 34455689999999999999998775 334445566778889999999999999988888766655555544 4455
Q ss_pred HHhccCCCCeeCHHHHHHHHHHh
Q 028784 148 EMFELEKKGCITPKGLQRMLNRL 170 (204)
Q Consensus 148 ~~~D~~~~G~i~~~el~~~l~~~ 170 (204)
..-|.||+|.|+..||.+++...
T Consensus 156 eEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 156 EEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHhcCCCCCcccHHHHHHHHHhC
Confidence 66799999999999999987553
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=3.6e-06 Score=39.77 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=13.6
Q ss_pred HHHHHHhccCCCCeeCHHHHHHH
Q 028784 144 KKAFEMFELEKKGCITPKGLQRM 166 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~ 166 (204)
..+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44566666666666666666554
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.03 E-value=6.9e-06 Score=38.76 Aligned_cols=24 Identities=54% Similarity=0.859 Sum_probs=17.6
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHH
Q 028784 70 LKQVFRHFDGDGDGKISALELRAY 93 (204)
Q Consensus 70 l~~~f~~~D~~~~g~i~~~el~~~ 93 (204)
|+.+|..+|.|++|.|+.+||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456777777777777777777764
No 87
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.99 E-value=1.6e-05 Score=71.09 Aligned_cols=63 Identities=19% Similarity=0.425 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKS-------YDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~-------~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.++..+|+.||.+.+|.|+..+|+..|+.+|+.+. +.+++.++...|++.+|+|+..||+.+|
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 56788999999999999999999999999999773 3479999999999999999999999987
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.97 E-value=4e-06 Score=55.35 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 028784 138 GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQ 201 (204)
Q Consensus 138 ~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 201 (204)
.....+..-|..+|.|++|.|+..|+..+...+ ...+..+..+++.+|.|+||.||+.||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345678889999999999999999999887644 34556788999999999999999999974
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.95 E-value=4.3e-06 Score=55.21 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=42.2
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTR 128 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 128 (204)
.......+.-.|..+|.|++|.|+..|+..+...+ ...+.-+..++..+|.|+++.|++.||..
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34455677777888888888888888887766544 45556677788888888888888888764
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.93 E-value=5.4e-05 Score=60.58 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHH
Q 028784 98 GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 98 ~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~ 169 (204)
|.......+..+|+.+|.+++|.|+++||+. ...+|..+|.|++|.|+.+||.+++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 5667788999999999999999999999952 467899999999999999999999865
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00023 Score=60.24 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=54.5
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
-+.+..|..+|+..+|+||-..-+.+|..-+ +....+..|+..-|.|+||+++-+||+-.|
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 4688999999999999999999999997666 777889999999999999999999998654
No 92
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.90 E-value=9.9e-05 Score=58.96 Aligned_cols=130 Identities=22% Similarity=0.334 Sum_probs=94.4
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHH-----HHHh---------CCCCCHHHHHHH---HHhhCCCCCCcccHHHHHHHH
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAY-----FGSI---------GEYMSYEEARAA---IDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~-----l~~~---------~~~~~~~~~~~l---~~~~d~~~~g~i~~~eF~~~~ 130 (204)
--++++|...++.++|.|+..++..- |..+ ....+.+....+ |..+|.|.+|.|+-++....-
T Consensus 225 tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 225 TVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred HHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 34578888899999999999997652 2211 122333444444 566788888888888877665
Q ss_pred hhccCCCCChHHHHHHHH----HhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 028784 131 LKDDRGDGDDEDLKKAFE----MFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQ 201 (204)
Q Consensus 131 ~~~~~~~~~~~~l~~~f~----~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 201 (204)
... ....-+..+|. .+-.-.+|.|+.++|..++-++-..-++.-++.+|+.+|.+++|.++..|..-
T Consensus 305 d~t----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~ 375 (493)
T KOG2562|consen 305 DHT----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRY 375 (493)
T ss_pred ccc----hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHH
Confidence 442 22456777887 34455678899999999998887777888899999999999999999887543
No 93
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.86 E-value=6.6e-05 Score=60.80 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=65.6
Q ss_pred CCCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhc
Q 028784 59 CEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEY---MSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKD 133 (204)
Q Consensus 59 ~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 133 (204)
..++++.+..++.+.|...| +++|+|+..|+..++.+.+.. ...++++.++...+.+.+|.|+|++|+..+...
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 34578899999999999999 999999999999999998644 458999999999999999999999999976553
No 94
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.81 E-value=5.9e-05 Score=46.99 Aligned_cols=61 Identities=20% Similarity=0.488 Sum_probs=49.4
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHh-CC-CCCHHHHHHHHHHhCCC----CCCceeHHHHHHhh
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRL-GD-SKSYDECVAMIQVFDTD----GNGVLDYHEFSQMM 203 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l 203 (204)
++..+|+.|-. +.+.||.++|.++|+.. +. .++.+++..++..+..+ ..+.+++++|..+|
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 36788888965 77899999999999876 44 57899999999998655 47889999999887
No 95
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.80 E-value=8.2e-05 Score=56.85 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=88.6
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHH
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYFGSI-GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKK 145 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 145 (204)
...+...|.+||.+++|.++..|-...+.-+ |...++..++..|+.++...||.+.-.+|-.++....+ ...-.+..
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~ 335 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV 335 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc
Confidence 3788999999999999999999987777765 67888999999999999999999999998888876543 44556788
Q ss_pred HHHHhccCCCCeeCHHHHHHHHHHhC
Q 028784 146 AFEMFELEKKGCITPKGLQRMLNRLG 171 (204)
Q Consensus 146 ~f~~~D~~~~G~i~~~el~~~l~~~g 171 (204)
.|+..+...+|+|+.++|+.+....+
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCc
Confidence 99999999999999999999987654
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.69 E-value=0.00013 Score=59.16 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCC---CHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSK---SYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~---~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
..+...|...| +++|+|+..|+..++...+... ..++++.++...+.|.+|+|+|++|+.++
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 46788999999 9999999999999999986543 58999999999999999999999999854
No 97
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.58 E-value=0.00058 Score=56.44 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=94.0
Q ss_pred CCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCC-----CCcccHHHHHHHHhhc
Q 028784 60 EPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGS-IGEYMSYEEARAAIDDFDTDG-----DSLLDFQDFTRMLLKD 133 (204)
Q Consensus 60 ~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~~-----~g~i~~~eF~~~~~~~ 133 (204)
.++....+..|.++|.+.|.|++|.++-.|+...=.. ++.++...++..+....+... +..++..-|+-+....
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred ccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHH
Confidence 4467778899999999999999999999999876554 577888777766655543321 2335555555333221
Q ss_pred cC-----------------------------------------CCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCC
Q 028784 134 DR-----------------------------------------GDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGD 172 (204)
Q Consensus 134 ~~-----------------------------------------~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~ 172 (204)
.. .....+.+..+|..||.|++|.++..||..++...+.
T Consensus 267 iergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 267 IERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 00 0111356888999999999999999999999999854
Q ss_pred CC-CHHHHHHHHHHhCCCCCCceeHHHHHHh
Q 028784 173 SK-SYDECVAMIQVFDTDGNGVLDYHEFSQM 202 (204)
Q Consensus 173 ~~-~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 202 (204)
.. +..-.... .-.+..|.++|+.|...
T Consensus 347 ~pW~~~~~~~~---t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 347 SPWTSSPYKDS---TVKNERGWLTLNGFLSQ 374 (625)
T ss_pred CCCCCCccccc---ceecccceeehhhHHHH
Confidence 32 11000000 11236788999888764
No 98
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0007 Score=43.92 Aligned_cols=58 Identities=29% Similarity=0.452 Sum_probs=38.6
Q ss_pred HHHHhccCCCCeeCHHHHHHHHHHh------CC---C-CCHHHH----HHHHHHhCCCCCCceeHHHHHHhh
Q 028784 146 AFEMFELEKKGCITPKGLQRMLNRL------GD---S-KSYDEC----VAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 146 ~f~~~D~~~~G~i~~~el~~~l~~~------g~---~-~~~~~~----~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.|...|-|++|.|+--|+...+.-. |. + .++.|+ +.+++.-|.|+||.|+|-||++..
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 4555666666666666666666544 11 2 345554 445666789999999999998764
No 99
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.41 E-value=0.00011 Score=53.96 Aligned_cols=60 Identities=20% Similarity=0.424 Sum_probs=32.1
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CC--CCCHHHHHHHHHHhCCCCCCceeHHHHH
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRL-GD--SKSYDECVAMIQVFDTDGNGVLDYHEFS 200 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~--~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 200 (204)
+.+..+|...|.+.+|.|+..|+++.+..- .+ .-+.++-+..|...|.|+||+|+++||.
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 445566666666666666666666544331 11 1122333445555666666666666654
No 100
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.41 E-value=0.0014 Score=57.03 Aligned_cols=103 Identities=18% Similarity=0.101 Sum_probs=87.1
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCCCCCCcccHHHHHHHHhhccCC
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSY-----EEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRG 136 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 136 (204)
.++....+|+..|+.++....|.++.+++..+|-.+|...-+ +++..++...|....|.++|.+|...|......
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 456677899999999999999999999999999999977663 445556666666667899999999999887777
Q ss_pred CCChHHHHHHHHHhccCCCCeeCHHHHHH
Q 028784 137 DGDDEDLKKAFEMFELEKKGCITPKGLQR 165 (204)
Q Consensus 137 ~~~~~~l~~~f~~~D~~~~G~i~~~el~~ 165 (204)
.....++..+|+.+-++.. +|..+||..
T Consensus 821 l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 821 LDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 7888899999999988776 899999888
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.33 E-value=0.0036 Score=43.92 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=83.6
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC---CCCcccHHHHHHHHhh---ccC------
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTD---GDSLLDFQDFTRMLLK---DDR------ 135 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~---~~g~i~~~eF~~~~~~---~~~------ 135 (204)
-.|++-...||+|++|.|..-|-..-++.+|+.+--..+-.++-..... ..+.+.-.-|--.+.. ..+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 4566777889999999999999999999999887666555544443221 1111111111111111 111
Q ss_pred ----CCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCC-------CCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 028784 136 ----GDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDS-------KSYDECVAMIQVFDTDGNGVLDYHEFSQ 201 (204)
Q Consensus 136 ----~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~-------~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 201 (204)
..-..+++..+|..|+..+.+.||..|+.++++..-.. -+.-|-..+...+ .+++|.+.-++-..
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRG 162 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhh
Confidence 11225789999999999888999999999999884221 1122222233333 57788988877544
No 102
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0015 Score=42.41 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=44.6
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHh------C----CCCCHHHHHHHHH----hhCCCCCCcccHHHHHHH
Q 028784 71 KQVFRHFDGDGDGKISALELRAYFGSI------G----EYMSYEEARAAID----DFDTDGDSLLDFQDFTRM 129 (204)
Q Consensus 71 ~~~f~~~D~~~~g~i~~~el~~~l~~~------~----~~~~~~~~~~l~~----~~d~~~~g~i~~~eF~~~ 129 (204)
-..|.++|.|++|.|+--|+.+++... | .-+++.++..++. .-|.+++|.|+|.||+..
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 456899999999999999999998764 2 1244566555544 457788999999999753
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.16 E-value=0.00058 Score=32.43 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=18.9
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHH
Q 028784 70 LKQVFRHFDGDGDGKISALELRAYFGS 96 (204)
Q Consensus 70 l~~~f~~~D~~~~g~i~~~el~~~l~~ 96 (204)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777776654
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.15 E-value=0.00069 Score=32.13 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=14.1
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHH
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLN 168 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~ 168 (204)
..+|+.+|.+++|.|+..+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555566555555554
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=97.11 E-value=0.0062 Score=51.45 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=59.1
Q ss_pred CCcccHHHHHHHHhhccC-CCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CC-CCCHHHHHHHHHHhC-------
Q 028784 118 DSLLDFQDFTRMLLKDDR-GDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GD-SKSYDECVAMIQVFD------- 187 (204)
Q Consensus 118 ~g~i~~~eF~~~~~~~~~-~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~-~~~~~~~~~~~~~~d------- 187 (204)
.|.++|++|.++.+.... ......++..+|..|-.+ .+.|+.++|..+|... ++ ..+.+++..++..+-
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 478899999888776432 223567888999888644 4689999999999886 33 366677777755431
Q ss_pred CCCCCceeHHHHHHhhC
Q 028784 188 TDGNGVLDYHEFSQMMA 204 (204)
Q Consensus 188 ~~~~g~i~~~eF~~~l~ 204 (204)
..+.+.+++++|..+|.
T Consensus 93 ~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccCcCHHHHHHHHc
Confidence 11234588899988773
No 106
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.09 E-value=0.0019 Score=40.14 Aligned_cols=63 Identities=25% Similarity=0.542 Sum_probs=46.2
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHhh
Q 028784 69 ELKQVFRHFDGDGDGKISALELRAYFGSIG--EYMSYEEARAAIDDFDTD----GDSLLDFQDFTRMLLK 132 (204)
Q Consensus 69 ~l~~~f~~~D~~~~g~i~~~el~~~l~~~~--~~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~~~~ 132 (204)
+|..+|..+.. +.+.|+.++|...|+.-. ...+.+++..++..+..+ ..+.+++..|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46677888855 677888888888887764 245788888888887544 3577888888888765
No 107
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.53 E-value=0.0018 Score=38.54 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC-------CCceeHHHHHHhh
Q 028784 138 GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDG-------NGVLDYHEFSQMM 203 (204)
Q Consensus 138 ~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~-------~g~i~~~eF~~~l 203 (204)
...+.+..+|+.+ .++.++||.+||++.| +.++++.++..+..-. .|.++|..|++.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 4557899999999 5788999999999986 4444566666664432 2679999998754
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.026 Score=48.47 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=58.0
Q ss_pred cchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 64 ITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 64 ~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
+.....++.+|+.+|+..+|+|+-..-+.+|-.-+ ++...+..++..-|.|+||.++-+||+-.+..
T Consensus 191 ~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 191 QHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred chhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34456789999999999999999999999998765 67788999999999999999999999865543
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.032 Score=45.50 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 61 PKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 61 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
.++.++.+.+..-|+.+-.|-+|.|+-.--+.++.+-. ++-.++..||...|.+.||-+++.||+..+..
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 35667777888889989899999999998888887654 66788999999999999999999999988765
No 110
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.024 Score=50.27 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=108.5
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccC------
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDR------ 135 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~------ 135 (204)
.+..+...+..+|..+.+. +|.++....+.+|..- .++...+.+++...|.+.+|.+++.||...+.....
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~ 199 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNS 199 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhccc
Confidence 5666778888888888776 8899999888888754 466777888999999999999999999765543100
Q ss_pred ---------------------C------------------------------------------------------C---
Q 028784 136 ---------------------G------------------------------------------------------D--- 137 (204)
Q Consensus 136 ---------------------~------------------------------------------------------~--- 137 (204)
. .
T Consensus 200 ~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp 279 (847)
T KOG0998|consen 200 EPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSP 279 (847)
T ss_pred CCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccCh
Confidence 0 0
Q ss_pred CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHh
Q 028784 138 GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQM 202 (204)
Q Consensus 138 ~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 202 (204)
.....+..+|...|.+++|.|+..+.+.++...| ++...+..++...|..+.|.+++++|.-.
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~ 342 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALA 342 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchh
Confidence 0123567789999999999999999999998855 78889999999999999999999987643
No 111
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.80 E-value=0.032 Score=43.46 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=80.0
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHH
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYFGSIG---EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDL 143 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 143 (204)
-.+|+..|..+-.+.++......+...-..+. .++-..++.+||..+|.+.++.++..|...+... ..+.-+
T Consensus 210 g~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~Ci 284 (434)
T KOG3555|consen 210 GNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACI 284 (434)
T ss_pred HHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHH
Confidence 46788889888777777776666665544443 3345688999999999999999999999887664 566788
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHhC
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRLG 171 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~g 171 (204)
+-.|...|...+|.|+..|....+...+
T Consensus 285 kpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 285 KPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHHHhhhcccccCccccchhhhhhccCC
Confidence 9999999999999999999998887765
No 112
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.025 Score=46.10 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+....-|+.+..|-.|.|+-.--++++.+-. +.-+|+..|++..|.+.||-+++.||+..|
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 34566677778788888888877777776544 566778888888888888888888887654
No 113
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.71 E-value=0.086 Score=36.85 Aligned_cols=60 Identities=10% Similarity=0.257 Sum_probs=44.2
Q ss_pred HHHHHHh---ccCCCCeeCHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 144 KKAFEMF---ELEKKGCITPKGLQRMLNRLGD---SKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 144 ~~~f~~~---D~~~~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
..+|..| -..+...|+...|..+|+..++ .++...++-+|..+-..+...|+|++|..+|
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 4455555 3355568999999999999744 5889999999999865666679999998876
No 114
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.71 E-value=0.039 Score=46.45 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHH
Q 028784 85 ISALELRAYFGSIG-EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGL 163 (204)
Q Consensus 85 i~~~el~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el 163 (204)
|+...+..+++.+- ...+...+.++|+..|.+.+|.++|.+++..+..... ....+.+..+|+.+|.+++ .++.++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 33344444444432 3355666788899999999999999999988877544 5666888999999999888 8888877
No 115
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.68 E-value=0.02 Score=52.19 Aligned_cols=57 Identities=19% Similarity=0.429 Sum_probs=50.4
Q ss_pred HHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 146 AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 146 ~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.|+.||+|+.|.|+..+|...+... .+.+..|++-++..+..|.+..++|++|++-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 5788999999999999999998763 35788999999999999999999999999754
No 116
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.38 E-value=0.8 Score=40.49 Aligned_cols=119 Identities=15% Similarity=0.247 Sum_probs=86.4
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC--CCc-----ccHHHHHHHHhhccCCCCChHHHHHHHHHh
Q 028784 78 DGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDG--DSL-----LDFQDFTRMLLKDDRGDGDDEDLKKAFEMF 150 (204)
Q Consensus 78 D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~--~g~-----i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~ 150 (204)
-.+..|.|....+.+++.+- -.+..+...+..+..-. ... .+|..|..++...+ ...++..+|..+
T Consensus 158 qvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc----pR~eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC----PRPEIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC----CchhHHHHHHHh
Confidence 34567888888777766542 22355666666654322 223 45666667766643 346899999999
Q ss_pred ccCCCCeeCHHHHHHHHHHh----------CCCCCHHHHHHHHHHhCCCC----CCceeHHHHHHhh
Q 028784 151 ELEKKGCITPKGLQRMLNRL----------GDSKSYDECVAMIQVFDTDG----NGVLDYHEFSQMM 203 (204)
Q Consensus 151 D~~~~G~i~~~el~~~l~~~----------g~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~l 203 (204)
..++.-++|.++|..+|... -..++...+..+++.+..|. .|.++-+.|+++|
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 98988999999999999874 22567889999999998874 7889999999886
No 117
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.29 E-value=0.031 Score=46.44 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
..+.-|..+|.|+.|+++..+..++|+..+..++++.+.++++..|.+.+|.+...||.+++
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLM 655 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999998875
No 118
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.25 E-value=0.056 Score=45.02 Aligned_cols=73 Identities=10% Similarity=0.113 Sum_probs=67.3
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhcc
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDD 134 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 134 (204)
.+..+.+..+..|..+|.++.|.++.++...+|++.+...+...++++++..+..-.|.++..||..++....
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 5777889999999999999999999999999999999999999999999999998899999999999887643
No 119
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.15 E-value=0.038 Score=43.03 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...+...|..+|.+.+|.|+..||+.+-. .-.+.-++.+|..+|...||.|+-.||...+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhh
Confidence 46789999999999999999999998753 3567789999999999999999999987543
No 120
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.88 E-value=0.34 Score=30.51 Aligned_cols=60 Identities=13% Similarity=0.321 Sum_probs=40.3
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHh-------CC----CCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRL-------GD----SKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-------g~----~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
++++.+|+.+. |++|.++...|..+|+.+ |+ .-.+..+...|... ...-.|+.++|++.|
T Consensus 3 dKyRylFslis-d~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl 73 (90)
T PF09069_consen 3 DKYRYLFSLIS-DSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWL 73 (90)
T ss_dssp HHHHHHHHHHS--TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHH
Confidence 67889999995 889999999999988875 33 12567777778776 245679999999876
No 121
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.66 E-value=0.33 Score=41.89 Aligned_cols=98 Identities=9% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHH
Q 028784 101 MSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECV 180 (204)
Q Consensus 101 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~ 180 (204)
.....+..++...|.+++|.+++.+-..++..... .-....++..|+..+...+|.+...++.++...++... ++.
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~ 208 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVY 208 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHH
Confidence 34677888999999999999999998888766433 23446778888888888999999999999988776433 666
Q ss_pred HHHHHhCCCCCCceeHHHHHHhh
Q 028784 181 AMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 181 ~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+|..+-. +.+.++.+++.++|
T Consensus 209 ~~f~~~s~-~~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 209 FLFVQYSH-GKEYLSTDDLLRFL 230 (746)
T ss_pred HHHHHHhC-CCCccCHHHHHHHH
Confidence 77766643 36677777766655
No 122
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.66 E-value=0.16 Score=35.86 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 176 YDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 176 ~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
++.+++||..++..+.+.+|+.|..+++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~ 122 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRML 122 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 5667778888877777778887777665
No 123
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.33 E-value=0.4 Score=33.53 Aligned_cols=62 Identities=13% Similarity=0.325 Sum_probs=47.4
Q ss_pred HHHHhhh---cCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 71 KQVFRHF---DGDGDGKISALELRAYFGSIG---EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 71 ~~~f~~~---D~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
+.+|..| -..+...|+-..|.++|+..+ -.++..++.-+|..+-..+...|+|++|+..|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4445444 455567999999999999975 3588999999999987766678999999998865
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.22 E-value=0.096 Score=44.23 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=54.7
Q ss_pred ccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHH
Q 028784 121 LDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYH 197 (204)
Q Consensus 121 i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~ 197 (204)
|+|..|...+....+-.....-+..+|+.+|.+++|.|+..+|...|..+...--.+-+.-+++.+|.+++ ..+.+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 55666666665544422334568889999999999999999999998887544455566777888888877 55443
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.94 E-value=0.028 Score=43.43 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHH
Q 028784 105 EARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLN 168 (204)
Q Consensus 105 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~ 168 (204)
.+.+.|..+|.+.++.|+-.|+.-+=...........-.+..|+..|.|++-.|+++|+...|.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 4555566666666666655554333222211123334455566666666666666666665553
No 126
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.83 E-value=0.1 Score=40.15 Aligned_cols=59 Identities=17% Similarity=0.353 Sum_probs=44.2
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHHhCCCCCCceeHHHHHHh
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRL-----GDSKSYDE-----------CVAMIQVFDTDGNGVLDYHEFSQM 202 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~-----g~~~~~~~-----------~~~~~~~~d~~~~g~i~~~eF~~~ 202 (204)
+..|...|.|++|.++-.||..++..- ...-.+++ -+.+|+..|.|.|..|++++|+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 456778899999999999999988763 11111111 345789999999999999999863
No 127
>PLN02952 phosphoinositide phospholipase C
Probab=93.57 E-value=1.2 Score=38.23 Aligned_cols=87 Identities=9% Similarity=0.114 Sum_probs=62.2
Q ss_pred CCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCC-CChHHHHHHHHHh----c--
Q 028784 81 GDGKISALELRAYFGSIG--EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGD-GDDEDLKKAFEMF----E-- 151 (204)
Q Consensus 81 ~~g~i~~~el~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~-~~~~~l~~~f~~~----D-- 151 (204)
+.|.+++.+|..+.+.+- ...+..++..+|..+..++ +.++.++|..++...+... ...+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999988887764 3447899999999996544 6899999999998876643 2334444454432 1
Q ss_pred -cCCCCeeCHHHHHHHHH
Q 028784 152 -LEKKGCITPKGLQRMLN 168 (204)
Q Consensus 152 -~~~~G~i~~~el~~~l~ 168 (204)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 11234689999999885
No 128
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.48 E-value=1.1 Score=39.83 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCH-----HHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 140 DEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSY-----DECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 140 ~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
..+++..|+.++....|.++.+++...|..+|...-+ .++..++...|.+..|.|+|.+|.+.|
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 4678999999999999999999999999999987764 234456666677777999999999876
No 129
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.63 E-value=0.26 Score=45.57 Aligned_cols=58 Identities=21% Similarity=0.419 Sum_probs=49.6
Q ss_pred HhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 74 FRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 74 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
|..+|+||.|.|+..+|.+++... -..+..++.-++.....|.+..++|.+|+.-+..
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 455799999999999999999754 3567888999999999999999999999977654
No 130
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.28 E-value=0.12 Score=40.20 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHhccCCCCeeCHHHHH---HHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 139 DDEDLKKAFEMFELEKKGCITPKGLQ---RMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 139 ~~~~l~~~f~~~D~~~~G~i~~~el~---~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.+..+...|..+|+|.++.|...|++ .++.... --..-...+++.+|.|+|-.|++.||...|
T Consensus 331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred hhheeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 34467788999999999999999854 4554432 234556789999999999999999998765
No 131
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.18 E-value=0.39 Score=40.39 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=53.5
Q ss_pred ccCCCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 57 SACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYM----SYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 57 ~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~----~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
....+++..-++-+..+|..||.|++|.++..||..++...+..+ ...+... .+..|.++|.-|+..|..
T Consensus 304 ~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~------~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 304 DQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTV------KNERGWLTLNGFLSQWSL 377 (625)
T ss_pred CcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccce------ecccceeehhhHHHHHHH
Confidence 334456778899999999999999999999999999999875433 1111111 125689999999998876
Q ss_pred c
Q 028784 133 D 133 (204)
Q Consensus 133 ~ 133 (204)
.
T Consensus 378 ~ 378 (625)
T KOG1707|consen 378 M 378 (625)
T ss_pred H
Confidence 4
No 132
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.06 E-value=1 Score=38.42 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=28.4
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CC-CCCHHHHHHHHHHhCC-CCCCceeHHHHHHhh
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRL-GD-SKSYDECVAMIQVFDT-DGNGVLDYHEFSQMM 203 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~-~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~l 203 (204)
.++..+|..|.. ++.++.++|..+|... |. ..+.+.+..|++.+.. -..+.++++.|..+|
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL 88 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYL 88 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHh
Confidence 355555555532 2455555555555554 22 2344445555554321 123345555555554
No 133
>PLN02228 Phosphoinositide phospholipase C
Probab=89.72 E-value=1.9 Score=36.68 Aligned_cols=65 Identities=9% Similarity=0.222 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCC-CChHHHHHHHHHhccC----CCCeeCHHHHHHHH
Q 028784 101 MSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGD-GDDEDLKKAFEMFELE----KKGCITPKGLQRML 167 (204)
Q Consensus 101 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~-~~~~~l~~~f~~~D~~----~~G~i~~~el~~~l 167 (204)
.+..++..+|..+..+ +.++.++|..++...+... ...+.+..+|..|... ..|.++.+.|..+|
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 4566666666666432 3566666666666544422 2234455556555432 22456666666655
No 134
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=0.43 Score=42.65 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=102.4
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccC------------
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDR------------ 135 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~------------ 135 (204)
..+...|..+|..+.|.|+..+...++..-| +....+-.++...|..+.|.++..+|...++....
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 5677889999999999999999998888665 67788888899999998899999999876654200
Q ss_pred ----------------------C-------------CCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHH
Q 028784 136 ----------------------G-------------DGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECV 180 (204)
Q Consensus 136 ----------------------~-------------~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~ 180 (204)
. .....+...+|+.+.+. .|.++.+..+-++..-+ +...-+.
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~ 165 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLG 165 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhc
Confidence 0 00123566678888755 78888888888876544 6777788
Q ss_pred HHHHHhCCCCCCceeHHHHHHhh
Q 028784 181 AMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 181 ~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.++...|.+.+|.++..+|.-.|
T Consensus 166 ~iw~l~d~d~~g~Ld~~ef~~am 188 (847)
T KOG0998|consen 166 RIWELSDIDKDGNLDRDEFAVAM 188 (847)
T ss_pred cccccccccccCCCChhhhhhhh
Confidence 89999999999999999997654
No 135
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.60 E-value=2.5 Score=36.26 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhC-C--CCCHHHHHHHHHHhCC-------CCCCceeHHHHHHhh
Q 028784 139 DDEDLKKAFEMFELEKKGCITPKGLQRMLNRLG-D--SKSYDECVAMIQVFDT-------DGNGVLDYHEFSQMM 203 (204)
Q Consensus 139 ~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g-~--~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~l 203 (204)
...++..+|..|..++ +.++.++|.++|.... . ..+.+++..++..+-. -+.+.+++++|..+|
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 4467888888885333 6888888888887763 2 2356666666654311 123458888888776
No 136
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=88.38 E-value=2.1 Score=27.45 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=53.9
Q ss_pred CCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeC
Q 028784 82 DGKISALELRAYFGSIG--EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCIT 159 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~ 159 (204)
+|.++..|...+-.-+. +.++..+...++..+........++.+|...+............+..+|+.--. +|.++
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~~ 90 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGELD 90 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCC
Confidence 68899988776654432 357788888888887766667788999988877643212223445555555443 46677
Q ss_pred HHHHHHH
Q 028784 160 PKGLQRM 166 (204)
Q Consensus 160 ~~el~~~ 166 (204)
..|-.-+
T Consensus 91 ~~E~~~l 97 (104)
T cd07313 91 EYEEHLI 97 (104)
T ss_pred HHHHHHH
Confidence 7765443
No 137
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=87.67 E-value=1.9 Score=29.47 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC-------CCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCC
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDG-------DSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEK 154 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~-------~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~ 154 (204)
.+.|+..||.++=.=+ ..+...+++++..+..++ .+.|+|+-|..+|..........+-...+|..|-...
T Consensus 5 ~~~lsp~eF~qLq~y~--eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS--EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHHHHH--HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 4678888887654433 245667788888875443 5689999999999887665666777888888886544
No 138
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.65 E-value=11 Score=28.80 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=67.5
Q ss_pred CcchHHHHHHHHhhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCC-----
Q 028784 63 KITKEDELKQVFRHF-DGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRG----- 136 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~-D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~----- 136 (204)
....+..+.+.|..+ |+.-+..|-.+-+..++..+|..+..-.+--+--.++...-+..+.+||+..+......
T Consensus 59 ~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~l 138 (260)
T KOG3077|consen 59 ARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKL 138 (260)
T ss_pred ccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHH
Confidence 345566777777666 55555799999999999999966554444333334455556789999999887664221
Q ss_pred ----------CCCh----HHHHHHHHHhccCCCCeeCHHHHHHHHHHhC
Q 028784 137 ----------DGDD----EDLKKAFEMFELEKKGCITPKGLQRMLNRLG 171 (204)
Q Consensus 137 ----------~~~~----~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g 171 (204)
.... .....+|..-...+.-.|+.+.-..++.-++
T Consensus 139 q~~l~~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll~ 187 (260)
T KOG3077|consen 139 QQRLDFLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLLF 187 (260)
T ss_pred HHHHHHHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHHh
Confidence 0011 2233444444434445677776666665553
No 139
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=87.59 E-value=1.1 Score=34.66 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=56.2
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHH----h-CCCCCHHH-----------HHHHHHhhCCCCCCcccHHHHHHHHhhccC
Q 028784 72 QVFRHFDGDGDGKISALELRAYFGS----I-GEYMSYEE-----------ARAAIDDFDTDGDSLLDFQDFTRMLLKDDR 135 (204)
Q Consensus 72 ~~f~~~D~~~~g~i~~~el~~~l~~----~-~~~~~~~~-----------~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 135 (204)
..|.++|.|++|+++..||..++.. + ...-.+.+ -..++..+|.+++.-|+.+||+..-...-.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 3577789999999999999888765 2 11111111 244677789999999999999977544211
Q ss_pred CCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh
Q 028784 136 GDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL 170 (204)
Q Consensus 136 ~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~ 170 (204)
. .. ..-|..++. .-.-|-+||+++=+.+
T Consensus 328 ~-~p----~e~WEtl~q--~~~yTeEEL~~fE~e~ 355 (442)
T KOG3866|consen 328 N-PP----KEEWETLGQ--KKVYTEEELQQFEREY 355 (442)
T ss_pred C-Cc----chhhhhhcc--cccccHHHHHHHHHHH
Confidence 0 00 122333332 2356666776665443
No 140
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.59 E-value=6.7 Score=26.45 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=19.0
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHHHHH
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~l~~ 169 (204)
+..++..||.+++|.|+.-.++-.+..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 566778889999999998888877754
No 141
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=86.72 E-value=10 Score=29.15 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=57.8
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHH----HHHHHHhc
Q 028784 81 GDGKISALELRAYFGSI--GEYMSYEE---ARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDL----KKAFEMFE 151 (204)
Q Consensus 81 ~~g~i~~~el~~~l~~~--~~~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l----~~~f~~~D 151 (204)
-+|.++..|+. +.+.+ ...++.++ +..+|..- .....++.+|+.-+...+. .....+ ..+|..-=
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~--~r~~l~~~lL~~l~~vA~ 141 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCG--GRFDLLRMFLEIQIQAAF 141 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence 37999999987 44443 14456666 55555553 3445889999988876543 222222 44444433
Q ss_pred cCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHHHHHh
Q 028784 152 LEKKGCITPKGLQRMLNRL-GDSKSYDECVAMIQVF 186 (204)
Q Consensus 152 ~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~ 186 (204)
. ||.++..|-.-+.+.. ...++..++..+...+
T Consensus 142 A--DG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 142 A--DGSLHPNERQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred h--cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 4779998833322221 2347888888776654
No 142
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=85.61 E-value=4 Score=36.16 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=81.0
Q ss_pred CcchHHH-HHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHH-HHHHhhCCCCCCcccHHHHHHHHhhccCCCC--
Q 028784 63 KITKEDE-LKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEAR-AAIDDFDTDGDSLLDFQDFTRMLLKDDRGDG-- 138 (204)
Q Consensus 63 ~~~~~~~-l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~-~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~-- 138 (204)
++.+|.. ++..+...|......|+..+++.+|...+..++..... .-+... .-..+.++|.+|..+....+-...
T Consensus 138 ~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a 216 (1267)
T KOG1264|consen 138 TPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKA 216 (1267)
T ss_pred ChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccchh
Confidence 3444443 35666667777777899999999999887766654332 333332 224567999999887766433111
Q ss_pred ChHHHHHHHHH--hccCCCCeeCHHHHHHHHHHhCCCCCH---HHHHHHHHHhCCC-----CCCceeHHHHHHhh
Q 028784 139 DDEDLKKAFEM--FELEKKGCITPKGLQRMLNRLGDSKSY---DECVAMIQVFDTD-----GNGVLDYHEFSQMM 203 (204)
Q Consensus 139 ~~~~l~~~f~~--~D~~~~G~i~~~el~~~l~~~g~~~~~---~~~~~~~~~~d~~-----~~g~i~~~eF~~~l 203 (204)
...+....|-. -+....-.++..||.++|......... ..+..++..|-.| ..-.+++.||+.+|
T Consensus 217 ~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fL 291 (1267)
T KOG1264|consen 217 ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFL 291 (1267)
T ss_pred hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHH
Confidence 11111111111 111123579999999999765222222 1344444444322 34468999999876
No 143
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.23 E-value=0.91 Score=29.81 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 101 MSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 101 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
+++++++.++..+-.+..|.+.|.||+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 67899999999999999999999999988764
No 144
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=84.96 E-value=2.3 Score=27.52 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=8.6
Q ss_pred hccCCCCeeCHHHHHHHHH
Q 028784 150 FELEKKGCITPKGLQRMLN 168 (204)
Q Consensus 150 ~D~~~~G~i~~~el~~~l~ 168 (204)
||+..+-+||.+++.++++
T Consensus 12 YDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cCCCccceeeHHHHHHHHH
Confidence 4444444444444444443
No 145
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.87 E-value=5.2 Score=32.61 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHH
Q 028784 99 EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYD 177 (204)
Q Consensus 99 ~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~ 177 (204)
..+.-+.++.+-+.+|.|.+|.|+.+|=-.+++.-+.-......-...|.. | +..||.++|+..+..- -.+.|.+
T Consensus 63 dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~-d---D~~ItVedLWeaW~~Sev~nWT~e 138 (575)
T KOG4403|consen 63 DKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG-D---DKHITVEDLWEAWKESEVHNWTNE 138 (575)
T ss_pred chhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC-C---ccceeHHHHHHHHHhhhhhcchHH
Confidence 345566777777888888888888777666666543322233333334433 2 4578888888877654 3345554
Q ss_pred HH
Q 028784 178 EC 179 (204)
Q Consensus 178 ~~ 179 (204)
+.
T Consensus 139 ~t 140 (575)
T KOG4403|consen 139 RT 140 (575)
T ss_pred HH
Confidence 43
No 146
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.57 E-value=3.1 Score=36.23 Aligned_cols=77 Identities=14% Similarity=0.348 Sum_probs=54.3
Q ss_pred CCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh--------CCCCCHHHHHHHHHHhCCC
Q 028784 118 DSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL--------GDSKSYDECVAMIQVFDTD 189 (204)
Q Consensus 118 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~--------g~~~~~~~~~~~~~~~d~~ 189 (204)
++ ++++||. ......+.+++..|..+|. .+|.++.+++..++... ....+.+....+++..|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 7788887 2224667788888888886 78888888888887764 2234455566678888888
Q ss_pred CCCceeHHHHHHh
Q 028784 190 GNGVLDYHEFSQM 202 (204)
Q Consensus 190 ~~g~i~~~eF~~~ 202 (204)
..|.+.++++.-+
T Consensus 74 ~~~y~~~~~~~~l 86 (646)
T KOG0039|consen 74 HKGYITNEDLEIL 86 (646)
T ss_pred ccceeeecchhHH
Confidence 8887777666544
No 147
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=83.46 E-value=2.2 Score=24.79 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHhccCCCCeeCHHHHHHHHHHh----------CCCCCHHHHHHHHHHh
Q 028784 148 EMFELEKKGCITPKGLQRMLNRL----------GDSKSYDECVAMIQVF 186 (204)
Q Consensus 148 ~~~D~~~~G~i~~~el~~~l~~~----------g~~~~~~~~~~~~~~~ 186 (204)
+.||+..+.+||.+++.++++.= |..+|..-+-+++-..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 46899999999999999998762 6677777776666544
No 148
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=83.31 E-value=9 Score=24.13 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHh-------C----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAYFGSI-------G----EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~~-------~----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
+.++-+|..+ .|.+|.++...|..+|+.+ | +...+..++..|... .....|+.++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 5678889888 5778999999988888752 2 223567777777775 24567899999988876
No 149
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=82.70 E-value=8.1 Score=24.00 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=26.2
Q ss_pred eeCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 028784 157 CITPKGLQRMLNRLGDSKSYDECVAMIQVFD 187 (204)
Q Consensus 157 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 187 (204)
.||.+||.++.+..++.+|.++++.++..+-
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILR 44 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 5888899999988899899888888887773
No 150
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=81.43 E-value=8 Score=22.94 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028784 85 ISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 85 i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 130 (204)
|+-+++..++..-|..++..++..+++.-+..+....+-..+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4456788888888899999999999988665554444444444333
No 151
>PLN02223 phosphoinositide phospholipase C
Probab=80.41 E-value=7.9 Score=32.80 Aligned_cols=64 Identities=8% Similarity=0.099 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHhccCCCCeeCHHHHHHHH---HHh-CC-CCCHHHHHHHHHHhCCC--------CCCceeHHHHHHhh
Q 028784 139 DDEDLKKAFEMFELEKKGCITPKGLQRML---NRL-GD-SKSYDECVAMIQVFDTD--------GNGVLDYHEFSQMM 203 (204)
Q Consensus 139 ~~~~l~~~f~~~D~~~~G~i~~~el~~~l---~~~-g~-~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~l 203 (204)
..+.++.+|..|- ++.|.++.+.|.++| ... |+ ..+.++++.++..+-.. ..+.+++++|.++|
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 4567888888885 566788888888887 433 32 45666777776654221 12458888888876
No 152
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=80.40 E-value=11 Score=23.34 Aligned_cols=52 Identities=15% Similarity=0.026 Sum_probs=39.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhc
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKD 133 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 133 (204)
.-.|+..+|+..|..........+...|-..+|..+++.|+-=||-.+.+..
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3589999999999987655555777888888999999999988887776654
No 153
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.34 E-value=26 Score=31.71 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=62.7
Q ss_pred CcccHHH-----HHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCC---------CCChHHHHHHHH
Q 028784 83 GKISALE-----LRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRG---------DGDDEDLKKAFE 148 (204)
Q Consensus 83 g~i~~~e-----l~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~---------~~~~~~l~~~f~ 148 (204)
..|..++ |..++.++ ....+++.+|..+..+....++-.+++.++....+. .....++..+.+
T Consensus 198 dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~lie 274 (1189)
T KOG1265|consen 198 DSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIE 274 (1189)
T ss_pred CccChhhccHHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHH
Confidence 4455544 45555554 445689999999999888999999999999875442 233467888888
Q ss_pred HhccCC----CCeeCHHHHHHHHHH
Q 028784 149 MFELEK----KGCITPKGLQRMLNR 169 (204)
Q Consensus 149 ~~D~~~----~G~i~~~el~~~l~~ 169 (204)
.|.++. .|.|+.+-|..+|..
T Consensus 275 kyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 275 KYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred HcCCchhhhhccccchhhhHHHhhC
Confidence 887664 689999999998865
No 154
>PLN02228 Phosphoinositide phospholipase C
Probab=80.08 E-value=12 Score=31.99 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=49.9
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHH
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIG--EYMSYEEARAAIDDFDTD----GDSLLDFQDFTRML 130 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~--~~~~~~~~~~l~~~~d~~----~~g~i~~~eF~~~~ 130 (204)
.....-.+|..+|..+-. ++.|+.++|..+|.... ...+.+.+..++..+... ..+.++...|..++
T Consensus 18 ~~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 18 KTREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 344466788888888764 36899999999999875 235677888999988653 23568888888776
No 155
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=79.94 E-value=6.8 Score=23.24 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=20.3
Q ss_pred eCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q 028784 158 ITPKGLQRMLNRLGDSKSYDECVAMIQVFDTD 189 (204)
Q Consensus 158 i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 189 (204)
|+-+++..+++.-|..++..++..+++.-+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 34455666666667777777777777665443
No 156
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=79.73 E-value=2.1 Score=25.51 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=35.7
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC-------CCCcccHHHHHH
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTD-------GDSLLDFQDFTR 128 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~-------~~g~i~~~eF~~ 128 (204)
..+++.+.|+.+ .++.++|+..||+..|.. +++..++..+..- ..|.++|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 347889999999 677899999999987542 1223444433221 226688888864
No 157
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=78.28 E-value=6.2 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDF 113 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 113 (204)
|--|+.+-++.++.++|-.+++..++.+++.+
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45899999999999999999999999998875
No 158
>PLN02222 phosphoinositide phospholipase C 2
Probab=78.19 E-value=11 Score=32.38 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHhh
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGE--YMSYEEARAAIDDFDT-DGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~g~i~~~eF~~~~~~ 132 (204)
.-.+|..+|..+.. ++.|+.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..+|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 34588888888854 479999999999998753 3577888888887632 23567999999999865
No 159
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=77.63 E-value=17 Score=23.89 Aligned_cols=53 Identities=4% Similarity=0.053 Sum_probs=42.6
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028784 71 KQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTR 128 (204)
Q Consensus 71 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 128 (204)
.-.|-+.-.-|+..++.+++.++|...|..+....+..+++.+.. .+..|.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344556666777789999999999999999999999999998733 56677765
No 160
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=77.36 E-value=27 Score=28.37 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=66.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCe---e
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGC---I 158 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~---i 158 (204)
...+.+..|+.+|.+.....+--+...+-..+|...++.|+--||=-+-+.+ .....+.+-|+.+...+-|+ |
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF----qPw~tllkNWq~LavtHPGYmAFL 263 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF----QPWKTLLKNWQTLAVTHPGYMAFL 263 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh----ccHHHHHHhhhhhhccCCceeEEe
Confidence 4589999999999988655555677788888999999999877775554442 44566777888888888885 7
Q ss_pred CHHHHHHHHHHh
Q 028784 159 TPKGLQRMLNRL 170 (204)
Q Consensus 159 ~~~el~~~l~~~ 170 (204)
|.+|++.-|..+
T Consensus 264 TYDEVk~RLqk~ 275 (563)
T KOG1785|consen 264 TYDEVKARLQKY 275 (563)
T ss_pred eHHHHHHHHHHH
Confidence 889998888775
No 161
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=77.14 E-value=5.4 Score=23.43 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Q 028784 153 EKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDG 190 (204)
Q Consensus 153 ~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~ 190 (204)
..++.++..++.+.|...|+.++++.+...++.++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 34568999999999999999999999999999987654
No 162
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.92 E-value=2.4 Score=33.76 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHH-HHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEA-RAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~-~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
...+++.|+.+|+.++|+|+..-+..++..++..+++.+. ..+-..+|...-|-|-..+|+..+..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 5789999999999999999999999999999866665444 44444456666666666666655543
No 163
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=76.33 E-value=18 Score=23.52 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=36.8
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
.-+|-.++..++-..+..+++.+|...|....++.++.++...
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 4456667777777899999999999999999999999999887
No 164
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=75.16 E-value=24 Score=24.36 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-----CCCCCHH
Q 028784 103 YEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-----GDSKSYD 177 (204)
Q Consensus 103 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-----g~~~~~~ 177 (204)
...+..++..-+.+.++.|++..|..++...+..+ +-..|=++ ...++.++++.++..+ .+....+
T Consensus 82 ~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGdW--------IT~~~Lkh-~n~MSk~Qik~L~~~Ii~~akae~~dtE 152 (175)
T PF04876_consen 82 HSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGDW--------ITKNFLKH-PNRMSKDQIKTLCEQIIEMAKAESSDTE 152 (175)
T ss_pred HHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhhH--------HHHHHHhc-cchhhHHHHHHHHHHHHHHHhccCCchH
Confidence 44455566554455577899999999998765522 22222222 3468888888887664 3445566
Q ss_pred HHHHHHHHh
Q 028784 178 ECVAMIQVF 186 (204)
Q Consensus 178 ~~~~~~~~~ 186 (204)
+.+.+++.+
T Consensus 153 ~Ye~vwkKm 161 (175)
T PF04876_consen 153 HYEKVWKKM 161 (175)
T ss_pred HHHHHHHHh
Confidence 666666655
No 165
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=75.00 E-value=8 Score=20.68 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhhcCC--CCCcccHHHHHHHHHH
Q 028784 66 KEDELKQVFRHFDGD--GDGKISALELRAYFGS 96 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~--~~g~i~~~el~~~l~~ 96 (204)
.+..|..+|..|... ....|+..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456778888888522 3569999999998875
No 166
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.42 E-value=6.9 Score=37.68 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=55.1
Q ss_pred CCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHhhc
Q 028784 61 PKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMS----YEEARAAIDDFDTDGDSLLDFQDFTRMLLKD 133 (204)
Q Consensus 61 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 133 (204)
.++..+.+++.++|..+|++..|.|...++..+++.+..++. ... +.+.-.+....++.|+|.+-+-.+...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 578889999999999999999999999999999999753322 111 333333445577899999988777653
No 167
>PLN02230 phosphoinositide phospholipase C 4
Probab=74.11 E-value=25 Score=30.44 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=49.0
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhhCCC-------CCCcccHHHHHHHHhh
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGE---YMSYEEARAAIDDFDTD-------GDSLLDFQDFTRMLLK 132 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~l~~~~d~~-------~~g~i~~~eF~~~~~~ 132 (204)
...++..+|..+..++ +.|+.++|..+|..-.. ..+.+.+..++..+... +.+.++++.|..++..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4578899999996444 79999999999998762 34667777777654221 2346999999998865
No 168
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.83 E-value=4.8 Score=32.16 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHH-HHHhCCCCCCceeHHHHH
Q 028784 138 GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAM-IQVFDTDGNGVLDYHEFS 200 (204)
Q Consensus 138 ~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~-~~~~d~~~~g~i~~~eF~ 200 (204)
...+.++.+|+.+|+.++|+|+-.-++.++..+...+++.+.-.+ -+..|...-|.|-.++|.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 336789999999999999999999999999998866665543333 334455555555555543
No 169
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=73.44 E-value=19 Score=22.36 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=36.3
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028784 83 GKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 83 g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 130 (204)
..||.+||..+.+..|.+++.++...++..+-...-.-.+-++=..++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~ll 60 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLL 60 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 378999999999999999999999999888765544444444444443
No 170
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=73.19 E-value=11 Score=22.51 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh
Q 028784 118 DSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL 170 (204)
Q Consensus 118 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~ 170 (204)
...|+|...+..+... .....+..+...|+.=..+.|+++||.+.++.+
T Consensus 6 sp~~~F~~L~~~l~~~----l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH----LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3457777777777664 334455666666655557788888888888775
No 171
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.65 E-value=26 Score=24.11 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=25.9
Q ss_pred HHHHHhccCCCCeeCHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 028784 145 KAFEMFELEKKGCITPKGLQRMLNRL--GDSKSYDECVAMIQVFDTDGNGVLDYHEFSQ 201 (204)
Q Consensus 145 ~~f~~~D~~~~G~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 201 (204)
.+|+....| |.++..|...+...+ .+.++..+++.++.....-+.-.++|-.|..
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts 90 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTS 90 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555543 345555544333322 3345555555555554443444455555444
No 172
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=72.46 E-value=16 Score=23.74 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=44.5
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 028784 70 LKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRM 129 (204)
Q Consensus 70 l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~ 129 (204)
+...|-++..-++...+..+++++|...|.....+.++.++..+. |. +.+|.+.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 345667778888889999999999999999999999999999973 22 56676643
No 173
>PRK00523 hypothetical protein; Provisional
Probab=71.56 E-value=16 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=29.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDF 113 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 113 (204)
|--|+.+-++.++.++|-.+|++.++.+++.+
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45899999999999999999999999999876
No 174
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.02 E-value=20 Score=21.25 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDF 113 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 113 (204)
|--|+.+-++.++.++|..+|+..++.+++.+
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45899999999999999999999999998875
No 175
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=69.93 E-value=20 Score=24.62 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=24.9
Q ss_pred CCeeCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCC
Q 028784 155 KGCITPKGLQRMLNRL-GDSKSYDECVAMIQVFDT 188 (204)
Q Consensus 155 ~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~ 188 (204)
.+.|+.+.|+.+|+.+ ...+.++-+..+|..|-.
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 4589999999999996 667999999999998844
No 176
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=69.57 E-value=21 Score=31.56 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=58.0
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhc------------cCC
Q 028784 69 ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKD------------DRG 136 (204)
Q Consensus 69 ~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~------------~~~ 136 (204)
.+.-+++.||...+|.|..-+|+-.+-.+.....++.+..+|..+-.++..++ ...|--++... .+.
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 44666777888888888888888777777666666667788888766555543 33332222211 112
Q ss_pred CCChHHHHHHHHHhccCCCCeeCHHHHHHHH
Q 028784 137 DGDDEDLKKAFEMFELEKKGCITPKGLQRML 167 (204)
Q Consensus 137 ~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l 167 (204)
.+.+..++.+|+. .++.-.|+...|...+
T Consensus 550 sNvepsvrsCF~~--v~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 550 SNIEPSVRSCFQF--VNNKPEIEAALFLDWM 578 (966)
T ss_pred CCCChHHHHHHHh--cCCCCcchHHHHHHHh
Confidence 3445667778872 2333456666665544
No 177
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.37 E-value=34 Score=23.54 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=63.2
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHH--hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHH
Q 028784 72 QVFRHFDGDGDGKISALELRAYFGS--IGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEM 149 (204)
Q Consensus 72 ~~f~~~D~~~~g~i~~~el~~~l~~--~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~ 149 (204)
-+|.....| |.++..|...+..- -.+.++..++..++.....-+...+++..|...++..+......+.+...+++
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667777654 77888775544332 24678899999999998777778899999999988754433333445555555
Q ss_pred hccCCCCeeCHHHHHHHHHH
Q 028784 150 FELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 150 ~D~~~~G~i~~~el~~~l~~ 169 (204)
.-. +|.++.-|-.-+.+.
T Consensus 112 a~A--Dg~l~e~Ed~vi~Rv 129 (148)
T COG4103 112 AYA--DGELDESEDHVIWRV 129 (148)
T ss_pred HHc--cccccHHHHHHHHHH
Confidence 443 566777775444443
No 178
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=69.32 E-value=4.1 Score=24.34 Aligned_cols=46 Identities=7% Similarity=0.079 Sum_probs=32.4
Q ss_pred CCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 155 KGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 155 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
+-+++.. .++..+...+.......+...|+.=..++|+-++|++.|
T Consensus 6 sp~~~F~---~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~l 51 (70)
T PF12174_consen 6 SPWMPFP---MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKL 51 (70)
T ss_pred CCcccHH---HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3456644 444444556777777777777777778899999999865
No 179
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=68.97 E-value=8.4 Score=24.73 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHHhC--C---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCC
Q 028784 82 DGKISALELRAYFGSIG--E---YMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKG 156 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~--~---~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G 156 (204)
+|.++.+|...+.+.+. . ......+..++...-..- ...+..++...+...........-+..++..-.. +|
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--DG 92 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--DG 92 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--cC
Confidence 68888888887777653 2 233455555555432220 0234566666655533211222334445555444 46
Q ss_pred eeCHHHH
Q 028784 157 CITPKGL 163 (204)
Q Consensus 157 ~i~~~el 163 (204)
.++..|-
T Consensus 93 ~~~~~E~ 99 (111)
T cd07176 93 EVDPEER 99 (111)
T ss_pred CCCHHHH
Confidence 6776653
No 180
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=68.73 E-value=30 Score=22.66 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=44.2
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 72 QVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 72 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
-.|-++...|+..++.+++..+|...|..+....+..+++.+.. .+..+.+.--..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 34555666778899999999999999999999999999988733 567777765443
No 181
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=67.11 E-value=10 Score=16.75 Aligned_cols=16 Identities=44% Similarity=0.808 Sum_probs=10.0
Q ss_pred cCCCCCcccHHHHHHH
Q 028784 78 DGDGDGKISALELRAY 93 (204)
Q Consensus 78 D~~~~g~i~~~el~~~ 93 (204)
|.|++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4577777777776543
No 182
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=67.10 E-value=9.1 Score=24.40 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=28.6
Q ss_pred CCCcccHHHHHHHH---hhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHH
Q 028784 117 GDSLLDFQDFTRML---LKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 117 ~~g~i~~~eF~~~~---~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~ 169 (204)
.||.++-.|-..+- ..... ........++..+........+..++.+.+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~--l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFG--LDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 37788877754443 33222 23444555555555444455777777776654
No 183
>PRK01844 hypothetical protein; Provisional
Probab=66.50 E-value=17 Score=21.71 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDF 113 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 113 (204)
+--|+.+-++.++.++|-.++++.++.+++.+
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45899999999999999999999999999876
No 184
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=66.31 E-value=21 Score=23.89 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHHHHHh
Q 028784 138 GDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAMIQVF 186 (204)
Q Consensus 138 ~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~ 186 (204)
.-..++..+|+.|- ++.|+.+.+.+++... |..+|..+++-+...+
T Consensus 34 tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 34 TFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred hHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 33456777777777 3568888888888776 5778877766655444
No 185
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=65.33 E-value=7.1 Score=23.59 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=7.2
Q ss_pred CCeeCHHHHHHHHH
Q 028784 155 KGCITPKGLQRMLN 168 (204)
Q Consensus 155 ~G~i~~~el~~~l~ 168 (204)
.|++..+||..++.
T Consensus 28 ~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 28 SGKLRGEEINSLLE 41 (75)
T ss_pred cCcccHHHHHHHHH
Confidence 45555555555543
No 186
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=65.14 E-value=8.8 Score=25.93 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeC
Q 028784 82 DGKISALELRAYFGSI--GEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCIT 159 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~--~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~ 159 (204)
+|.|+.+|...+..-+ ...++..+...++..++.-....+++.+|+..+............+..++.+.-.| |.++
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~~ 114 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEIS 114 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-S
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCCC
Confidence 6899999988776665 34456666777777766555556888888887766332112234466666666655 5566
Q ss_pred HHH---HHHHHHHhCC
Q 028784 160 PKG---LQRMLNRLGD 172 (204)
Q Consensus 160 ~~e---l~~~l~~~g~ 172 (204)
..| +.++...+|+
T Consensus 115 ~~E~~~l~~ia~~L~i 130 (140)
T PF05099_consen 115 PEEQEFLRRIAEALGI 130 (140)
T ss_dssp CCHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 555 3334444453
No 187
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=64.65 E-value=2.9 Score=30.31 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHhccC-CCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHh
Q 028784 147 FEMFELE-KKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQM 202 (204)
Q Consensus 147 f~~~D~~-~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 202 (204)
|-.+|.. .+|+++..||.-+-. ..-.-+.-+..+|+.+|.|+||.|+++||...
T Consensus 193 f~qld~~p~d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred eccccCCCccccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 3344543 578999888765321 11122445677899999999999999999754
No 188
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=63.80 E-value=35 Score=22.51 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFD 187 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 187 (204)
.-+|-.....++..+|.+++..+|...|..+....+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34455555566777999999999999999999999888888873
No 189
>PLN02223 phosphoinositide phospholipase C
Probab=63.30 E-value=38 Score=28.91 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHhhCCCC--------CCcccHHHHHHHHhh
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYF---GSIG--EYMSYEEARAAIDDFDTDG--------DSLLDFQDFTRMLLK 132 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l---~~~~--~~~~~~~~~~l~~~~d~~~--------~g~i~~~eF~~~~~~ 132 (204)
-..++.+|..+- .++|.++.+.+..+| .... ...+.++.+.++..+-... .+.++.+.|..++..
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 367888888884 667899999999999 4432 4567777777777653322 256999999998866
No 190
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=60.58 E-value=16 Score=21.20 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 028784 84 KISALELRAYFGSIGEYMSYEEARAAIDD 112 (204)
Q Consensus 84 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 112 (204)
.|+.++|..+|+.....++.+++.++-..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w 57 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEEW 57 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 58999999999999999999988876554
No 191
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.12 E-value=51 Score=22.32 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=60.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhCCCCCC---cccHHHHHHHHhhccCCC----------------CChHHHHHHHHH
Q 028784 89 ELRAYFGSIGEYMSYEEARAAIDDFDTDGDS---LLDFQDFTRMLLKDDRGD----------------GDDEDLKKAFEM 149 (204)
Q Consensus 89 el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g---~i~~~eF~~~~~~~~~~~----------------~~~~~l~~~f~~ 149 (204)
.+..++...+...+.+++..+++.-|.++-. .+....|+..+....... .....++-+|..
T Consensus 20 ~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~l 99 (155)
T COG4807 20 DLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFSL 99 (155)
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhhc
Confidence 5666777777788888888887776655433 255666776654432211 112456666654
Q ss_pred hccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 028784 150 FELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDT 188 (204)
Q Consensus 150 ~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 188 (204)
=+ +++..++...++++|..|+..+|..-|.
T Consensus 100 K~---------~Dm~~I~~~~~f~vS~pElsAlfR~~~h 129 (155)
T COG4807 100 KT---------DDMLAILTEQQFRVSMPELSALFRAPDH 129 (155)
T ss_pred cc---------chHHHHHhccCcccccHHHHHHHhCCCc
Confidence 33 3588888888999999999999876653
No 192
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=60.10 E-value=26 Score=20.21 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=25.8
Q ss_pred CeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 156 GCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 156 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
-.+|.+||..++..++..++..++..|+..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4688999999999998888888888877665
No 193
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=59.75 E-value=26 Score=20.20 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDF 113 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 113 (204)
+-.+|.+||..++..++..++..++-.+|..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34688899999999999888888888888775
No 194
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=59.59 E-value=26 Score=24.05 Aligned_cols=49 Identities=8% Similarity=0.137 Sum_probs=38.1
Q ss_pred CCCeeCHHHHHHHHHHhC-------C--CCCHHHHHHHHHHhCCCCCCc-eeHHHHHHh
Q 028784 154 KKGCITPKGLQRMLNRLG-------D--SKSYDECVAMIQVFDTDGNGV-LDYHEFSQM 202 (204)
Q Consensus 154 ~~G~i~~~el~~~l~~~g-------~--~~~~~~~~~~~~~~d~~~~g~-i~~~eF~~~ 202 (204)
|+-.||.+||.+++..-. . .++.+++..+.+.+...+.+. +++.|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 456899999999988741 1 578899999999998766664 898887765
No 195
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=58.14 E-value=26 Score=28.82 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCCCcccHHHHHHHHhhccCCC---CChHHHHHHHHHhccCCCCeeCHHHHHHHHHH
Q 028784 116 DGDSLLDFQDFTRMLLKDDRGD---GDDEDLKKAFEMFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 116 ~~~g~i~~~eF~~~~~~~~~~~---~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~ 169 (204)
.++...+..||+......+... -..+.++.+-+.+|.|.+|.|+.+|--.+|+.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 4555677788876655433322 23477899999999999999999999888876
No 196
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=57.67 E-value=26 Score=28.00 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=32.0
Q ss_pred CCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 155 KGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 155 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.|.||++|-...++.......++.++.+++.++ ||-+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 588888888888888655566677888888775 5667777664
No 197
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=57.66 E-value=47 Score=21.12 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHH
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKA 146 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 146 (204)
.+.|...|..+- ..|...+.+.+.+.+| +++.+|..+-...-. +.+.-..++.
T Consensus 3 ~~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~------~~eq~~qmL~--------------- 55 (96)
T cd08315 3 QETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKANERV------TREQLYQMLL--------------- 55 (96)
T ss_pred HhHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHHCCC------CHHHHHHHHH---------------
Confidence 456777777663 3677888888989888 778888777655311 1222222222
Q ss_pred HHHhc-cCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHH
Q 028784 147 FEMFE-LEKKGCITPKGLQRMLNRLGDSKSYDECVAMI 183 (204)
Q Consensus 147 f~~~D-~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 183 (204)
.+- ..|. .-|...|.+.|+.++.....+.+...+
T Consensus 56 --~W~~~~G~-~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 56 --TWVNKTGR-KASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred --HHHHhhCC-CcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 221 1222 355777888888888877777776655
No 198
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=56.89 E-value=30 Score=18.61 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 028784 161 KGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQ 201 (204)
Q Consensus 161 ~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 201 (204)
+|....|..+| .+..++..++..... ...++.++.++
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 56677777777 678888888887754 33455666554
No 199
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=56.86 E-value=67 Score=22.77 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 137 DGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 137 ~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
.....++..+++.+-..+...++..+|.+.+ ..|+.+|+++++.....+
T Consensus 81 lkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 81 LKTNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp --SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 3456788888888876666689999998876 457788999988766554
No 200
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=56.54 E-value=5.2 Score=29.06 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=27.1
Q ss_pred CCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHH
Q 028784 118 DSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRML 167 (204)
Q Consensus 118 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l 167 (204)
+|.++-.|.+-+-... ...+.-....|...|.|++|+|+.+|....+
T Consensus 202 d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 5666666665443222 2344455666666777777777766665544
No 201
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=56.02 E-value=42 Score=24.96 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCC-CCh-H
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYFGSIG---EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGD-GDD-E 141 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~-~~~-~ 141 (204)
..+|.++....-..+.|.|+..|+...+.... ..++++++.+.+..+..-+.| +....|-.......... ... .
T Consensus 96 a~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~ 174 (223)
T PF04157_consen 96 AVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSK 174 (223)
T ss_dssp HHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-H
T ss_pred HHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhH
Confidence 34555555555555668999999999998853 357899999999888776655 33322221111111111 111 4
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
....+.........|.+|..++.+-+ | ++..-+...+..+
T Consensus 175 ~~~~il~~~~~~~~g~vt~~~l~~~~---~--ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 175 DQSRILELAEEENGGGVTASELAEKL---G--WSVERAKEALEEL 214 (223)
T ss_dssp HHHHHHHHH--TTTSEEEHHHHHHHH---T--B-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHh---C--CCHHHHHHHHHHH
Confidence 44556666624567899999999877 3 6777777666655
No 202
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=55.89 E-value=25 Score=25.46 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=24.4
Q ss_pred ccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 028784 151 ELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDT 188 (204)
Q Consensus 151 D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 188 (204)
..|.+|+++.+||.+.+..-+..++.+++..+...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35668999999999988887777889999998877654
No 203
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=55.09 E-value=37 Score=23.62 Aligned_cols=84 Identities=13% Similarity=0.300 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcC----CCCC-cccHHHHHHHHHHhC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhcc----
Q 028784 68 DELKQVFRHFDG----DGDG-KISALELRAYFGSIG----EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDD---- 134 (204)
Q Consensus 68 ~~l~~~f~~~D~----~~~g-~i~~~el~~~l~~~~----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---- 134 (204)
..+.+.|+.|-. ..+| .|+-..+..+|...+ -.++.-+..-.|..+-...-..|+|++|...+....
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 445555555533 2233 577777888888764 445666666677666666667899999976664421
Q ss_pred CCCCChHHHHHHHHHhc
Q 028784 135 RGDGDDEDLKKAFEMFE 151 (204)
Q Consensus 135 ~~~~~~~~l~~~f~~~D 151 (204)
.....++.+..+.+.+.
T Consensus 92 k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLLA 108 (180)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 12333455555555543
No 204
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=55.04 E-value=23 Score=20.73 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=31.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDG 117 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~ 117 (204)
++-++..++...|..-|..+++..+...++.++.++
T Consensus 11 ~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 467899999999988899999999999999987765
No 205
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=54.90 E-value=58 Score=21.34 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=34.2
Q ss_pred HHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 145 KAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 145 ~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
-+|-.....++..+|.+++..+|+..|..+....+..+++.+
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L 46 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISEL 46 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 345555566677899999999999999999988888888777
No 206
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=54.28 E-value=60 Score=21.42 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=40.1
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028784 73 VFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTR 128 (204)
Q Consensus 73 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 128 (204)
.|-+.-..++..++.+++.++|...|..+....+..+++.+.. .+..|.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3444445667789999999999999999999999999988733 56677764
No 207
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=53.48 E-value=58 Score=20.92 Aligned_cols=62 Identities=21% Similarity=0.285 Sum_probs=32.1
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhc---cCCCCeeCHHHHHHHHHH
Q 028784 102 SYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFE---LEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 102 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D---~~~~G~i~~~el~~~l~~ 169 (204)
.-..|+.-|..+.. +|.+....|-.++... ...+-...+|..+- .-....|+.+||+.+...
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGMK----DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCCc----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 35566666666655 6677777777766542 33444455554432 112346777777776654
No 208
>PHA02105 hypothetical protein
Probab=53.35 E-value=41 Score=19.11 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=27.2
Q ss_pred eeCHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCC--CCceeHHHHHHhh
Q 028784 157 CITPKGLQRMLNRL---GDSKSYDECVAMIQVFDTDG--NGVLDYHEFSQMM 203 (204)
Q Consensus 157 ~i~~~el~~~l~~~---g~~~~~~~~~~~~~~~d~~~--~g~i~~~eF~~~l 203 (204)
.++.+|+..++..- ..++..+.++.+-..|..-. --.++|+||-.+|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 36667777766553 34566666666655554432 2246788876654
No 209
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=53.04 E-value=61 Score=21.06 Aligned_cols=43 Identities=5% Similarity=0.156 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 85 ISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 85 i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
||.+++.++|...|..+....+..+++.+.. .+..+.+.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHHHh
Confidence 9999999999999999999999999998732 577888766544
No 210
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=52.77 E-value=49 Score=27.77 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=22.5
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHH
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMI 183 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 183 (204)
..+|..|-...++.++...|..+|+..|+.-++.-++.+|
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mM 128 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMM 128 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHH
Confidence 3345555444456666666666666666665555555443
No 211
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=52.52 E-value=41 Score=23.39 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=28.0
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHh
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSI 97 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~ 97 (204)
....++.|.......|..+.++||++||+.++-.+
T Consensus 64 ~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 64 GMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 34566778888888898888889999999987654
No 212
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=52.04 E-value=34 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=25.7
Q ss_pred cCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 028784 152 LEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFD 187 (204)
Q Consensus 152 ~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 187 (204)
-|.+|++..++|.+.++..+..++.+++..+...=|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 356788888888887776555678888777775544
No 213
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=51.42 E-value=63 Score=20.75 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=16.2
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDD 112 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 112 (204)
..++.-|..+-. +|.|+..+|..++ |..-+.+....||..
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdA 69 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDA 69 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHH
Confidence 344444444443 4455555554433 233334444444443
No 214
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=51.00 E-value=36 Score=23.53 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHH----------HHhCCCCCCceeHHHHHHhh
Q 028784 161 KGLQRMLNRLGDSKSYDECVAMI----------QVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 161 ~el~~~l~~~g~~~~~~~~~~~~----------~~~d~~~~g~i~~~eF~~~l 203 (204)
.=+.+-++++|+.++++|+..++ .-+-.+..|..+...|.++|
T Consensus 93 ~ll~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 93 ILLEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 33555666679999999988887 11224578888888877764
No 215
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=50.75 E-value=17 Score=22.25 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=11.5
Q ss_pred CCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 155 KGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 155 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
.|+||.+++..+|.. ..++.+.++.++..+
T Consensus 19 ~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPE--DDLDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S---S---HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCc--cCCCHHHHHHHHHHH
Confidence 345555555555432 224444555544444
No 216
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=50.51 E-value=68 Score=20.85 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=27.2
Q ss_pred eCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 158 ITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 158 i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
+|.+++.++|...|..++..-+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999888886
No 217
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=50.45 E-value=26 Score=20.90 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHh----CCCCCHHHHHHHHHHh
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRL----GDSKSYDECVAMIQVF 186 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~----g~~~~~~~~~~~~~~~ 186 (204)
..+..+...++..-.--|-..+|+.++..+ |...+++-++.||..|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 345555555554433345566777777765 7778888888888654
No 218
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=50.37 E-value=24 Score=19.41 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=20.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDFDTD 116 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~ 116 (204)
+|.|+..+|+.++. .+.+.+-.++..+|..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 57788888887774 6666666777766654
No 219
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=50.36 E-value=76 Score=21.37 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHhhc------cCCCCChHHHHHHHHHhccCC--CCeeCHHHHHHHHHHh--------CCCCC-------
Q 028784 119 SLLDFQDFTRMLLKD------DRGDGDDEDLKKAFEMFELEK--KGCITPKGLQRMLNRL--------GDSKS------- 175 (204)
Q Consensus 119 g~i~~~eF~~~~~~~------~~~~~~~~~l~~~f~~~D~~~--~G~i~~~el~~~l~~~--------g~~~~------- 175 (204)
+.|-|..|...++.. .-..-....+..+|+...-+. +..|+..++..++..+ +...+
T Consensus 13 n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~ 92 (127)
T PF09068_consen 13 NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVD 92 (127)
T ss_dssp TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----
T ss_pred hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHH
Confidence 445566665554331 001223345666666654432 4679999999988876 21111
Q ss_pred ---HHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 176 ---YDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 176 ---~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
+--+..++..||.++.|.|+.-.|.-.|
T Consensus 93 ~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 93 LAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 1124567999999999999988876543
No 220
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=49.90 E-value=24 Score=21.67 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC-CCceeHHHHHHhh
Q 028784 159 TPKGLQRMLNRLGDSKSYDECVAMIQVFDTDG-NGVLDYHEFSQMM 203 (204)
Q Consensus 159 ~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~-~g~i~~~eF~~~l 203 (204)
..++|.+.| .|...+.+.+...+..++.+. =|.++.+||+++|
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 356666666 377778888888888875543 3467888887764
No 221
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=49.17 E-value=66 Score=20.31 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=41.2
Q ss_pred CCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccC--CCCChHHHHHHHHHhccCCCCee
Q 028784 82 DGKISALELRAYFGSIG-EYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDR--GDGDDEDLKKAFEMFELEKKGCI 158 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~--~~~~~~~l~~~f~~~D~~~~G~i 158 (204)
+|.++..|...+-.-+. ...+......+...+..-.....++.+|...+..... .......+..++..--. ||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~~ 90 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGEL 90 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCCC
Confidence 68888888655443321 2233333334444332222223677888777765321 11222344555555443 4677
Q ss_pred CHHHHHH
Q 028784 159 TPKGLQR 165 (204)
Q Consensus 159 ~~~el~~ 165 (204)
+..|-.-
T Consensus 91 ~~~E~~~ 97 (106)
T cd07316 91 SEAEREL 97 (106)
T ss_pred CHHHHHH
Confidence 7776443
No 222
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=49.09 E-value=83 Score=28.12 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=79.5
Q ss_pred HHHHHHhhhcCC-CCCcccHHHHHHHHHH--------hCC--CCC---HHHHHHHHHhhCCCCCCcccHHHHHHHHhhcc
Q 028784 69 ELKQVFRHFDGD-GDGKISALELRAYFGS--------IGE--YMS---YEEARAAIDDFDTDGDSLLDFQDFTRMLLKDD 134 (204)
Q Consensus 69 ~l~~~f~~~D~~-~~g~i~~~el~~~l~~--------~~~--~~~---~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~ 134 (204)
-+.++|..++.. +...+...+...+|.. .|. .++ .-.+..++..||...+|.|..-+|.-.+...+
T Consensus 421 l~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lc 500 (966)
T KOG4286|consen 421 LALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLC 500 (966)
T ss_pred HHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHh
Confidence 345566666655 3445566665554432 221 111 34468889999999999999888877665543
Q ss_pred CCCCChHHHHHHHHHhccCCCCeeCHHHHHHHH-------HHhCC-------CCCHHHHHHHHHHhCCCCCCceeHHHHH
Q 028784 135 RGDGDDEDLKKAFEMFELEKKGCITPKGLQRML-------NRLGD-------SKSYDECVAMIQVFDTDGNGVLDYHEFS 200 (204)
Q Consensus 135 ~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l-------~~~g~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 200 (204)
. ...++.++.+|+....++.-++ ...|..+| +.+|+ ++ +.-+...|+ ..++--.|++..|+
T Consensus 501 k-~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNv-epsvrsCF~--~v~~~pei~~~~f~ 575 (966)
T KOG4286|consen 501 K-AHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNI-EPSVRSCFQ--FVNNKPEIEAALFL 575 (966)
T ss_pred c-chhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCC-ChHHHHHHH--hcCCCCcchHHHHH
Confidence 3 5677889999999986665443 54444444 44433 22 223444555 24556678888887
Q ss_pred Hhh
Q 028784 201 QMM 203 (204)
Q Consensus 201 ~~l 203 (204)
..+
T Consensus 576 dw~ 578 (966)
T KOG4286|consen 576 DWM 578 (966)
T ss_pred HHh
Confidence 654
No 223
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.61 E-value=91 Score=23.93 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=40.0
Q ss_pred hCCCCCHHHHHHHHHhhC-CCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCC
Q 028784 97 IGEYMSYEEARAAIDDFD-TDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGD 172 (204)
Q Consensus 97 ~~~~~~~~~~~~l~~~~d-~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~ 172 (204)
.....+...+..+|..+- ...+..|.++-...++.....+......+..|++.- ...-|..+++|+..-+..+|-
T Consensus 57 ~~~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~-A~~m~~Fsr~ef~~g~~~l~~ 132 (260)
T KOG3077|consen 57 VQARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG-AATMCEFSREEFLKGMTALGC 132 (260)
T ss_pred hhccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhc-cchhhhhhHHHHHHHHHHcCC
Confidence 344566666666666653 322233443333333333333333445556666544 556677777777777777664
No 224
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=47.77 E-value=67 Score=20.00 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHH
Q 028784 102 SYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRML 167 (204)
Q Consensus 102 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l 167 (204)
+..+...+++..-.+. -.|...+|...+....+ .....+...+=..+|--.+|+||.=||--+.
T Consensus 5 TK~eA~~FW~~~Fg~r-~IVPW~~F~~~L~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 5 TKAEAAEFWKTSFGKR-TIVPWSEFRQALQKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCC-eEeeHHHHHHHHHHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 3444455554432222 34566666666555433 1121222222234455555666655554433
No 225
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=47.49 E-value=34 Score=16.58 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHH
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYFGS 96 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~ 96 (204)
+..|...+. .|.||.+||...-..
T Consensus 5 L~~L~~l~~------~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 5 LEKLKELYD------KGEISEEEYEQKKAR 28 (31)
T ss_pred HHHHHHHHH------cCCCCHHHHHHHHHH
Confidence 445555554 789999998776544
No 226
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=46.52 E-value=53 Score=22.02 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=37.7
Q ss_pred cchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCC
Q 028784 64 ITKEDELKQVFRHFDGDGDGKISALELRAYFGSI-GEYMSYEEARAAIDDFDTD 116 (204)
Q Consensus 64 ~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~ 116 (204)
..-...+..+|.+|- ++.|+.+.+..++... |..++..++..+...+-.|
T Consensus 33 ~tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n 83 (122)
T PF06648_consen 33 ETFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN 83 (122)
T ss_pred chHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc
Confidence 334567788888887 4689999998888877 5788888888888776443
No 227
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=46.33 E-value=40 Score=19.49 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=21.7
Q ss_pred eCHHHHHHHHHHhCCCCCHHHHHHH
Q 028784 158 ITPKGLQRMLNRLGDSKSYDECVAM 182 (204)
Q Consensus 158 i~~~el~~~l~~~g~~~~~~~~~~~ 182 (204)
.+.+++..+.+..|+.+|.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4588999999999999999998764
No 228
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=45.92 E-value=35 Score=18.42 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHhCCCCCHHHH
Q 028784 159 TPKGLQRMLNRLGDSKSYDEC 179 (204)
Q Consensus 159 ~~~el~~~l~~~g~~~~~~~~ 179 (204)
+.+++..+.+..|+.+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 778899999999999998775
No 229
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=45.84 E-value=87 Score=23.86 Aligned_cols=98 Identities=13% Similarity=0.197 Sum_probs=55.9
Q ss_pred CcccHHHHHHHHHH-------------hCCCCCHHHHHHHHHhhCCC-------------CCCcccHHHHHHHHhhccCC
Q 028784 83 GKISALELRAYFGS-------------IGEYMSYEEARAAIDDFDTD-------------GDSLLDFQDFTRMLLKDDRG 136 (204)
Q Consensus 83 g~i~~~el~~~l~~-------------~~~~~~~~~~~~l~~~~d~~-------------~~g~i~~~eF~~~~~~~~~~ 136 (204)
|.+-..+|...+.. ..+.+-.+-+..+++.|-.. -.|.|+.++.++.+..-...
T Consensus 115 GIL~AKDLL~~~~~~~~~F~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIED 194 (293)
T COG4535 115 GILLAKDLLPFMRSDAEPFDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIED 194 (293)
T ss_pred hhhhHHHHHHHhcCCcccccHHHhcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccccc
Confidence 55666666655543 22334456778888876332 25779999999888775544
Q ss_pred CCChHHHHHHHHHhccCCCCee-CHHHHHHHHHHhCCCCCHHHHHHH
Q 028784 137 DGDDEDLKKAFEMFELEKKGCI-TPKGLQRMLNRLGDSKSYDECVAM 182 (204)
Q Consensus 137 ~~~~~~l~~~f~~~D~~~~G~i-~~~el~~~l~~~g~~~~~~~~~~~ 182 (204)
....++-.. .+.+. ++.-.| -..++.++=..+|-++++++++.+
T Consensus 195 E~Deee~~d-I~~ls-~~~~~VrALT~IedFNe~F~t~FsDeevDTI 239 (293)
T COG4535 195 EYDEEEDAD-IRQLS-RHTWRVRALTEIEDFNEAFGTHFSDEEVDTI 239 (293)
T ss_pred ccchhhhhh-hHhhc-CCceEEEecccHHHHHHHhcCCCChhhhhhh
Confidence 444443333 33332 122111 122344444455999999998885
No 230
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=44.56 E-value=68 Score=26.98 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=41.7
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh---CC-----CCCCcccHHHHHHHHh
Q 028784 73 VFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDF---DT-----DGDSLLDFQDFTRMLL 131 (204)
Q Consensus 73 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~---d~-----~~~g~i~~~eF~~~~~ 131 (204)
+|..+-...++.+++.-|..+|++.|+.-+..-+..++..+ +. ...+.++-+.|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 46666555579999999999999999887766665555543 32 2345678777876654
No 231
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=44.50 E-value=99 Score=21.02 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=30.6
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDG 190 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~ 190 (204)
+.+..+-+.+...+-..-+.+.=..+|+.-| ++++|+++.|+......
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 4455566666545555566777788888777 89999999998886544
No 232
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=44.49 E-value=88 Score=20.39 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=28.0
Q ss_pred hhhcCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCCCCC
Q 028784 75 RHFDGDGDGKISALELRAYFGSI----------GEYMSYEEARAAIDDFDTDGD 118 (204)
Q Consensus 75 ~~~D~~~~g~i~~~el~~~l~~~----------~~~~~~~~~~~l~~~~d~~~~ 118 (204)
++||...+-+|+.+++..++..= |..++...+-.++-.....+.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~ 63 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGE 63 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCC
Confidence 35788888899999999888751 334445555555554444333
No 233
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=43.99 E-value=58 Score=22.36 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=25.0
Q ss_pred eeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q 028784 157 CITPKGLQRMLNRLGDSKSYDECVAMIQVFDTD 189 (204)
Q Consensus 157 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 189 (204)
..|.+++..+......++|++|+..+++.++.-
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 357778888777667778888888888888663
No 234
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=43.67 E-value=1.7e+02 Score=23.52 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=44.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh
Q 028784 106 ARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL 170 (204)
Q Consensus 106 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~ 170 (204)
+..++..+|..+.|.++.-.-...+.. ...+...++++.+|.... |.+|.+..-.+-+++...
T Consensus 112 laflLaA~ds~~~g~~~vfavkialat-lc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALAT-LCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhh-hccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 345567788888888775544444333 223556788999999988 778998888888888775
No 235
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.50 E-value=40 Score=22.23 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.4
Q ss_pred eCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 028784 158 ITPKGLQRMLNRLGDSKSYDECVAMIQVFD 187 (204)
Q Consensus 158 i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 187 (204)
-|.+|++.++..-+..++.+++++|+...+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 478899999999999999999999886654
No 236
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=43.26 E-value=92 Score=20.31 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=29.0
Q ss_pred CCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 153 EKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 153 ~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
.+. .||.+.+..+|...|..+.+.-+..+++.+
T Consensus 13 ~g~-~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 13 AGK-EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred cCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 444 799999999999999999999888888776
No 237
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=43.08 E-value=97 Score=20.47 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=32.1
Q ss_pred HHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 146 AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 146 ~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
+|-..--.++..+|.+++..+|...|..+...-+..+++.+
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 33334445566799999999999999999888888888777
No 238
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.82 E-value=56 Score=17.65 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCeeC-HHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 155 KGCIT-PKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 155 ~G~i~-~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
.|.|+ ..++.+-|...|..++++.++.+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 46665 334444445558888888888887654
No 239
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=42.49 E-value=57 Score=21.41 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 159 TPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 159 ~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
+.+|++.++..+...+++++++.|+...
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4666777776666667777777776544
No 240
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=40.69 E-value=88 Score=19.33 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHHHHhC--CCCCH---HHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCC
Q 028784 82 DGKISALELRAYFGSIG--EYMSY---EEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKG 156 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~--~~~~~---~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G 156 (204)
+|.|+.+|...+..-+. ..++. ..+..++...-.. ..+...+................+..++..... +|
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~a--DG 87 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVALA--DG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cc
Confidence 68899998877665543 11133 3444444443221 223445555444322111222334445555444 46
Q ss_pred eeCHHHHHH
Q 028784 157 CITPKGLQR 165 (204)
Q Consensus 157 ~i~~~el~~ 165 (204)
.++..|..-
T Consensus 88 ~~~~~E~~~ 96 (104)
T cd07177 88 ELDPEERAL 96 (104)
T ss_pred CCCHHHHHH
Confidence 677666443
No 241
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=40.33 E-value=1e+02 Score=25.06 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=32.5
Q ss_pred HhhhcCCCCCcccHHHHHHHHHHhCCCC-------CHH----HHHHHHHhhCCCCCCcccH
Q 028784 74 FRHFDGDGDGKISALELRAYFGSIGEYM-------SYE----EARAAIDDFDTDGDSLLDF 123 (204)
Q Consensus 74 f~~~D~~~~g~i~~~el~~~l~~~~~~~-------~~~----~~~~l~~~~d~~~~g~i~~ 123 (204)
|..+|.+.+..++.++-..++..+|++. +.. ++..++..++..+-..|-+
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVl 223 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVM 223 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEE
Confidence 4444556678999999999999988654 222 4556666666554333443
No 242
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.18 E-value=51 Score=26.96 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHH
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFS 200 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 200 (204)
....+|..+.+- +|+|+-..-+.-+- +..+.+..+-+|++..|.|.||.++-+||.
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 456677777643 68888766665443 445778889999999999999999999996
No 243
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=40.07 E-value=77 Score=25.46 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=29.0
Q ss_pred HHhhhc---CCCCCcccHHHHHHHHHHhCCCCC----------HHHHHHHHHhhCCC
Q 028784 73 VFRHFD---GDGDGKISALELRAYFGSIGEYMS----------YEEARAAIDDFDTD 116 (204)
Q Consensus 73 ~f~~~D---~~~~g~i~~~el~~~l~~~~~~~~----------~~~~~~l~~~~d~~ 116 (204)
.|..|| .++.+.++..+...+|..+|.+.. ..++..++......
T Consensus 127 ~F~vFDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 183 (342)
T cd07894 127 GFFVFDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKE 183 (342)
T ss_pred EEEEEeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHC
Confidence 344444 444568899999999999875432 25666666665444
No 244
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=38.79 E-value=1e+02 Score=19.49 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccH---HHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHH
Q 028784 86 SALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDF---QDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKG 162 (204)
Q Consensus 86 ~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~---~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~e 162 (204)
...+++..++.....++..-++++++..... .|+- +++...+... ..+....+-..-...+--+|+.+|
T Consensus 5 ~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~~-----~~~i~~~A~~~A~ha~RKTV~~~D 76 (91)
T COG2036 5 GLKEIRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEEY-----LEEIAEDAVELAEHAKRKTVKAED 76 (91)
T ss_pred hHHHHHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCeecHHH
Confidence 3445555555555555555566666655333 2332 2222222221 113344455555666777899999
Q ss_pred HHHHHHHhCCC
Q 028784 163 LQRMLNRLGDS 173 (204)
Q Consensus 163 l~~~l~~~g~~ 173 (204)
+...++.+|..
T Consensus 77 I~la~~~~~~~ 87 (91)
T COG2036 77 IKLALKRLGRR 87 (91)
T ss_pred HHHHHHHhccc
Confidence 99998887643
No 245
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=38.51 E-value=69 Score=17.49 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDD 112 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 112 (204)
.+......|+..|.. +.+.+..++..+...+| ++...|...|..
T Consensus 7 ~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 7 FTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 456677888888876 45888888888888877 666777666654
No 246
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=38.50 E-value=66 Score=23.29 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=25.3
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q 028784 78 DGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDT 115 (204)
Q Consensus 78 D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~ 115 (204)
..+.+|.+..+||...+..-+..++.+++..++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45678999999999999887777889999999988544
No 247
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.48 E-value=28 Score=33.85 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCC----CHHHHHHHHHHhCCCCCCceeHHHHHHh
Q 028784 137 DGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSK----SYDECVAMIQVFDTDGNGVLDYHEFSQM 202 (204)
Q Consensus 137 ~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~----~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 202 (204)
.++.+....++..||++.+|.|...++..+++.+..++ .++. +.+-..+....+|.|++.+-+-+
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~a 1481 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFA 1481 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHH
Confidence 45567888899999999999999999999999973322 2222 23333334445666776654433
No 248
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=37.93 E-value=56 Score=16.27 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 028784 84 KISALELRAYFGSIGEYMS 102 (204)
Q Consensus 84 ~i~~~el~~~l~~~~~~~~ 102 (204)
.++..|++..|+..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4677888888888886554
No 249
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=36.32 E-value=42 Score=21.16 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=3.1
Q ss_pred CCCCCHHHHHHH
Q 028784 171 GDSKSYDECVAM 182 (204)
Q Consensus 171 g~~~~~~~~~~~ 182 (204)
|+.++.+++..+
T Consensus 22 Gi~v~~~~L~~f 33 (90)
T PF02337_consen 22 GIRVKKKDLINF 33 (90)
T ss_dssp T----HHHHHHH
T ss_pred CeeecHHHHHHH
Confidence 444443333333
No 250
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=35.56 E-value=1e+02 Score=25.93 Aligned_cols=42 Identities=29% Similarity=0.246 Sum_probs=36.4
Q ss_pred ccCCCCCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhC
Q 028784 57 SACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIG 98 (204)
Q Consensus 57 ~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~ 98 (204)
.....++..+..-|.-+|+..|.+|--.|+..||+.+|.-++
T Consensus 117 srlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 117 SRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred HHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 455667888889999999999999989999999999998664
No 251
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=35.54 E-value=61 Score=18.81 Aligned_cols=31 Identities=3% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHHHHHhCCC
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRMLNRLGDS 173 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~ 173 (204)
+..+++.++.+...-|+.+|..+-.+..|.+
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 3445556665555556666666666666553
No 252
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=35.37 E-value=1.5e+02 Score=20.84 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=33.2
Q ss_pred HHHHHHHHHh-ccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 028784 141 EDLKKAFEMF-ELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFD 187 (204)
Q Consensus 141 ~~l~~~f~~~-D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 187 (204)
+.+..+|+.| |.+.+-+.+.+++.+-|...| +..+++.+.+..++
T Consensus 3 dVL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 3 DVLMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 3456677776 444566789999999999988 67888877665554
No 253
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=34.92 E-value=1.6e+02 Score=20.68 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCee
Q 028784 81 GDGKISALELRAYFGSIGE--YMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCI 158 (204)
Q Consensus 81 ~~g~i~~~el~~~l~~~~~--~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i 158 (204)
.+..|.+..+..+|++.-. .--.++.+..+..+ ..||+.++... |-..+...+.-.|
T Consensus 29 qDr~LPIANV~RIMK~~lP~naKIsKDAKE~vQEC---------VSEfISFvT~E------------AsekC~~EkRKTI 87 (168)
T KOG0869|consen 29 QDRFLPIANVSRIMKKALPANAKISKDAKETVQEC---------VSEFISFVTGE------------ASEKCQREKRKTI 87 (168)
T ss_pred hhhhccHHHHHHHHHhcCCcccccchHHHHHHHHH---------HHHHHHHHhhH------------HHHHHHHHhcCcc
Confidence 3567788888888876421 11134455555553 47888888752 2233344556689
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 159 TPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 159 ~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
+-+++..+|..+|..-=.+-++..+..|
T Consensus 88 ngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 88 NGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred cHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 9999999999988643333344444333
No 254
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=34.67 E-value=1.4e+02 Score=19.86 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHh--CCCCCHHHHHHHHHHh
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRL--GDSKSYDECVAMIQVF 186 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~ 186 (204)
...+.|..+...+.+.|+..-+...+.-+ |..++.+.+..+++..
T Consensus 22 ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetl 68 (130)
T COG5611 22 KAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETL 68 (130)
T ss_pred HHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 46667777777777777777666655444 6666666666666644
No 255
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.50 E-value=21 Score=25.77 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHH
Q 028784 140 DEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMI 183 (204)
Q Consensus 140 ~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 183 (204)
.+..+.+|..||+++--..+.+++.++|..-|+--+..-++.++
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 47789999999999888899999999999888865554444443
No 256
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=34.44 E-value=97 Score=17.97 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=10.4
Q ss_pred CCCCCHHHHHHHHHHhC
Q 028784 171 GDSKSYDECVAMIQVFD 187 (204)
Q Consensus 171 g~~~~~~~~~~~~~~~d 187 (204)
|..++.+++..++..+.
T Consensus 16 G~~i~~~ei~~~L~~lg 32 (71)
T smart00874 16 GLDLSAEEIEEILKRLG 32 (71)
T ss_pred CCCCCHHHHHHHHHHCC
Confidence 66666666666666554
No 257
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.29 E-value=98 Score=27.30 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=14.1
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHHHH
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRMLN 168 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~l~ 168 (204)
...++...|.++.|++..+++..++.
T Consensus 63 ~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 63 AALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHhhhhccccccceeeecchhHHHH
Confidence 34445555555555666555555553
No 258
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=33.79 E-value=66 Score=15.88 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=14.5
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 028784 84 KISALELRAYFGSIGEYMS 102 (204)
Q Consensus 84 ~i~~~el~~~l~~~~~~~~ 102 (204)
.++..+|+..|+..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 5678888888888886644
No 259
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=33.74 E-value=1.4e+02 Score=19.55 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=40.0
Q ss_pred hhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 028784 75 RHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLL 131 (204)
Q Consensus 75 ~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 131 (204)
-.+..-+. .|+.+.+..++...|..+.+..++.++..+.. ++.+|.+.-..
T Consensus 8 llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~idE~i~~~~ 58 (109)
T COG2058 8 LLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDIDEVIKNAA 58 (109)
T ss_pred HHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHHHHHHHhc
Confidence 33443434 99999999999999999999999999999743 57788776543
No 260
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=33.69 E-value=1e+02 Score=19.22 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=19.0
Q ss_pred eCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 028784 158 ITPKGLQRMLNRLGDSKSYDECVAMIQV 185 (204)
Q Consensus 158 i~~~el~~~l~~~g~~~~~~~~~~~~~~ 185 (204)
|+.+++.++.+-..+.+++++++.+...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4667777777766777888776555433
No 261
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=33.69 E-value=78 Score=20.02 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCC
Q 028784 73 VFRHFDGDGDGKISALELRAYFGSIGE-YMSYEEARAAIDDFDTD 116 (204)
Q Consensus 73 ~f~~~D~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~l~~~~d~~ 116 (204)
+|...-.+|...++.+|-+.++.+-|- -.+..++...++....|
T Consensus 2 lf~~~~~~G~y~l~f~eA~~AC~~~gA~lAs~~QL~~AW~~~Gld 46 (95)
T cd03521 2 LFVLELENGSQGLGLRAARQSCASLGARLASAAELRRAVVECFFS 46 (95)
T ss_pred ceeEeCCCCccccCHHHHHHHHHHcCCEeccHHHHHHHHHHhCcc
Confidence 355566788999999999999999874 45677777777764333
No 262
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=33.61 E-value=95 Score=19.03 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=10.4
Q ss_pred eCHHHHHHHHHHhCCCCCHHHHHHH
Q 028784 158 ITPKGLQRMLNRLGDSKSYDECVAM 182 (204)
Q Consensus 158 i~~~el~~~l~~~g~~~~~~~~~~~ 182 (204)
++..+.+++.+.+| +|+.+++.+
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~i 31 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERV 31 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHH
Confidence 44444555555444 344444333
No 263
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=33.21 E-value=1.3e+02 Score=25.49 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHH
Q 028784 67 EDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKA 146 (204)
Q Consensus 67 ~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 146 (204)
.+....+|..+-+.+...|+..+|..++.++|......+-...|..-+... ..+.|.+|+..+..... ....+...
T Consensus 484 l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~-~gv~yl~v~~~i~sel~---D~d~v~~~ 559 (612)
T COG5069 484 LRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSV-SGVFYLDVLKGIHSELV---DYDLVTRG 559 (612)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcccc-ccchHHHHHHHHhhhhc---Chhhhhhh
Confidence 344456666665566668999999999999987766554444444322211 13567777776655332 33444444
Q ss_pred HHHhc
Q 028784 147 FEMFE 151 (204)
Q Consensus 147 f~~~D 151 (204)
|..++
T Consensus 560 ~~~f~ 564 (612)
T COG5069 560 FTEFD 564 (612)
T ss_pred HHHHH
Confidence 44443
No 264
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=33.02 E-value=1e+02 Score=22.22 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=33.1
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHH
Q 028784 78 DGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQ 124 (204)
Q Consensus 78 D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ 124 (204)
..|.+|.++.++|...++.-+..++.+.+..++..-+ .+...+.
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 3467899999999999876666789999998887743 3444443
No 265
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.85 E-value=1.1e+02 Score=17.98 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=32.9
Q ss_pred HHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 144 KKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 144 ~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
+..|+.+=.+ +-.|+.+-++..+...|-..|+..+..+++.+
T Consensus 19 r~~~~k~l~~-NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 19 RKYMEKQLKE-NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3444444333 34799999999999999999999999998876
No 266
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=32.45 E-value=47 Score=16.80 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=11.0
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 028784 84 KISALELRAYFGSIGEYMS 102 (204)
Q Consensus 84 ~i~~~el~~~l~~~~~~~~ 102 (204)
.++..+++.+|...|+.++
T Consensus 3 sltV~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFP 21 (35)
T ss_dssp T--SHHHHHHHHHHT---S
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677888888888875543
No 267
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=31.25 E-value=1.6e+02 Score=19.51 Aligned_cols=48 Identities=29% Similarity=0.287 Sum_probs=34.6
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCce
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVL 194 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i 194 (204)
+.+..+...--..+...|+.+.+...+ -.++|+..+|+....-+.|.+
T Consensus 57 EIlelA~n~ak~~k~krItp~hi~lAi------~nD~EL~~L~~~vtI~~ggv~ 104 (115)
T cd00074 57 EVLELAGNAARDNKKKRITPRHLQLAV------RNDEELNKLLKGVTIASGGVL 104 (115)
T ss_pred HHHHHHHHHHHHcCCCeEcHHHHHHHH------hccHHHHHHHcCCcccCCccC
Confidence 455566666555667789999998887 477888989887656666654
No 268
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.12 E-value=1e+02 Score=21.76 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=11.6
Q ss_pred HhccCCCCeeCHHHHHHHHHH
Q 028784 149 MFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 149 ~~D~~~~G~i~~~el~~~l~~ 169 (204)
.|++..+-+||.+++.++++.
T Consensus 20 LYnT~TSTYVTL~dla~mVk~ 40 (193)
T COG5394 20 LYNTGTSTYVTLEDLAQMVKE 40 (193)
T ss_pred hcccCCceeeeHHHHHHHHhc
Confidence 345555555666666655544
No 269
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=31.06 E-value=1e+02 Score=17.18 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=22.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAID 111 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~ 111 (204)
.|.|+.+||..-+......-+..++..++.
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 789999999888777666666666666654
No 270
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=31.05 E-value=70 Score=15.71 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=10.2
Q ss_pred CCeeCHHHHHHHHHH
Q 028784 155 KGCITPKGLQRMLNR 169 (204)
Q Consensus 155 ~G~i~~~el~~~l~~ 169 (204)
.|.|+.+|+..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 567777777776643
No 271
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=30.92 E-value=1.5e+02 Score=19.00 Aligned_cols=65 Identities=8% Similarity=0.096 Sum_probs=32.8
Q ss_pred ccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHHHHHh
Q 028784 121 LDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAMIQVF 186 (204)
Q Consensus 121 i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~ 186 (204)
|.-.+|.-++....+ .-..+++..+-..+-.++...++..++...+... +...+++++..+-...
T Consensus 20 vP~~Dy~PLlALL~r-~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRR-RLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTT-TS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 555555554444322 2444555555555544555555666666666665 5556666666655444
No 272
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=30.83 E-value=1.1e+02 Score=21.19 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=8.8
Q ss_pred CCCCeeCHHHHHHH
Q 028784 153 EKKGCITPKGLQRM 166 (204)
Q Consensus 153 ~~~G~i~~~el~~~ 166 (204)
+.+|..+...|.++
T Consensus 131 ~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 131 PQTGQFDRAKLKQF 144 (145)
T ss_pred cccCCcCHHHHHhh
Confidence 45666666666654
No 273
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=30.78 E-value=86 Score=19.16 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHH
Q 028784 162 GLQRMLNRLGDSKSYDECVAMI 183 (204)
Q Consensus 162 el~~~l~~~g~~~~~~~~~~~~ 183 (204)
|+-.+|+.+|..++++|..-+-
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 5666788889999998866553
No 274
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=30.57 E-value=2.1e+02 Score=20.57 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCC
Q 028784 117 GDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL--GDSKSYDECVAMIQVFDTDG 190 (204)
Q Consensus 117 ~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~--g~~~~~~~~~~~~~~~d~~~ 190 (204)
..|.++..+|..-+... +-.+ -|+.+.|.++-+.+ -..+..++++.-++.++.|-
T Consensus 33 a~Gklsm~dFsk~I~~Y----------------meeN---NISqeKf~niQkk~mERYGfd~~~iE~q~K~~Gid~ 89 (186)
T PF12983_consen 33 AEGKLSMADFSKKIMEY----------------MEEN---NISQEKFLNIQKKFMERYGFDPSEIEKQMKSMGIDM 89 (186)
T ss_pred hcCcccHHHHHHHHHHH----------------HHHc---CCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCc
Confidence 45777777776554432 2212 36666665544443 12255667777777766553
No 275
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=30.55 E-value=2.3e+02 Score=21.01 Aligned_cols=87 Identities=8% Similarity=0.075 Sum_probs=45.2
Q ss_pred CcccHHHHHHHHH-HhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCee-CH
Q 028784 83 GKISALELRAYFG-SIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCI-TP 160 (204)
Q Consensus 83 g~i~~~el~~~l~-~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i-~~ 160 (204)
-.+.-+.|...+. .+...-.++.++.|+..+-.=.....-+..|+.-+...+. ....+++...|+..=-+.+..+ +.
T Consensus 26 ~pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m~~~i~~~n~fl~~~~~~~~-~~~~~~~~~YyKkhIy~~d~~v~d~ 104 (205)
T PF12238_consen 26 PPFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLMKHKISHMNAFLNDWPPHML-EEGREKMTKYYKKHIYKEDSEVKDY 104 (205)
T ss_pred CCCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhh-hccHHHHHHHHHHhccCcccccccH
Confidence 3566666654433 3333344444555554432211122234555552221111 3445677888877655556667 88
Q ss_pred HHHHHHHHHh
Q 028784 161 KGLQRMLNRL 170 (204)
Q Consensus 161 ~el~~~l~~~ 170 (204)
+-|..+|+.+
T Consensus 105 ~~lv~~ck~F 114 (205)
T PF12238_consen 105 NGLVKFCKDF 114 (205)
T ss_pred HHHHHHHHHH
Confidence 8888888776
No 276
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=30.40 E-value=1.3e+02 Score=18.84 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=21.4
Q ss_pred eCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 158 ITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 158 i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
|+.+++.++.+-..+.+++++++.+...+
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 77888888888778888888766654433
No 277
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.09 E-value=1.7e+02 Score=19.99 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=25.3
Q ss_pred HHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 146 AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 146 ~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
+++.+-....+.+|.+|+.+.|+..+..++..-+...++.+
T Consensus 22 Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 34444333345677777777777776666666666665555
No 278
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=29.91 E-value=1.2e+02 Score=17.83 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 028784 159 TPKGLQRMLNRLGDSKSYDECVAMIQVFDT 188 (204)
Q Consensus 159 ~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 188 (204)
+.+.+.+++ |..++.+++..+++.++.
T Consensus 7 ~~~~i~~~l---G~~i~~~~i~~~L~~lg~ 33 (70)
T PF03484_consen 7 SLDKINKLL---GIDISPEEIIKILKRLGF 33 (70)
T ss_dssp EHHHHHHHH---TS---HHHHHHHHHHTT-
T ss_pred cHHHHHHHh---CCCCCHHHHHHHHHHCCC
Confidence 334444443 666677776666666643
No 279
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=29.59 E-value=1.4e+02 Score=18.32 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=25.8
Q ss_pred HHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 160 PKGLQRMLNRL----GDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 160 ~~el~~~l~~~----g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
...++++++.. +.+++.+..+.|.+..-.++- ..++..+..+|
T Consensus 30 E~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~ 76 (79)
T PF14069_consen 30 EKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMM 76 (79)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHH
Confidence 34455555543 777888777777777744433 55566555554
No 280
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=29.55 E-value=1e+02 Score=16.81 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=31.4
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAID 111 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~ 111 (204)
.+..+...|...|.. +..++..+...+...+| ++...|...|.
T Consensus 7 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 466677888888873 56888888888888876 66666666554
No 281
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.45 E-value=1.2e+02 Score=24.90 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTR 128 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~ 128 (204)
-..-++|..+.+- +|+|+-..-+.-+- +-.++...+..+|+..|.|.+|.++-+||.-
T Consensus 444 ~~yde~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 444 PTYDEIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred cchHhhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3455667776654 68888777665543 2456777888888888888888888888853
No 282
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=29.45 E-value=1.6e+02 Score=19.01 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=35.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 130 (204)
+-.++.+++..+|...|..+....+..+.+.+.. .+..+++...
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g-----k~i~elIa~~ 58 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKALEG-----KDIKDLLSNV 58 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHhhcc
Confidence 3489999999999999999998888888877632 5777777654
No 283
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=29.12 E-value=1.9e+02 Score=24.44 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=13.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 106 ARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 106 ~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
+.-+|+..|..+=--|+++++..++..
T Consensus 130 L~i~F~~ADd~gLlLlDLkDLra~l~~ 156 (502)
T PF05872_consen 130 LNIVFRIADDEGLLLLDLKDLRAMLQY 156 (502)
T ss_pred HHHHHHHhccCCCccccHHHHHHHHHH
Confidence 344444544444444555555555444
No 284
>PF13551 HTH_29: Winged helix-turn helix
Probab=29.05 E-value=1.5e+02 Score=18.60 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHhhhcCCCCCcccHHHHHHHH-H-HhCCCCCHHHHHHHHHhh
Q 028784 62 KKITKEDELKQVFRHFDGDGDGKISALELRAYF-G-SIGEYMSYEEARAAIDDF 113 (204)
Q Consensus 62 ~~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l-~-~~~~~~~~~~~~~l~~~~ 113 (204)
++......|.+.+.....++.+..+...+...| . ..+..++...+..++...
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 355667777777776655544579999999855 3 457889999999888763
No 285
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=28.85 E-value=2.4e+02 Score=20.77 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHhhccCCCC-----------ChHHHHHHHHHhccCCCCeeC
Q 028784 118 DSLLDFQDFTRMLLKDDRGDG-----------DDEDLKKAFEMFELEKKGCIT 159 (204)
Q Consensus 118 ~g~i~~~eF~~~~~~~~~~~~-----------~~~~l~~~f~~~D~~~~G~i~ 159 (204)
.|.++|..++.-+.....+.. ..+.+...-+.||++.+|.|-
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~ 227 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIK 227 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCcee
Confidence 478999999988876433211 123455555667777766553
No 286
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=28.74 E-value=13 Score=25.25 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=9.1
Q ss_pred CCCeeCHHHHHHHHHH
Q 028784 154 KKGCITPKGLQRMLNR 169 (204)
Q Consensus 154 ~~G~i~~~el~~~l~~ 169 (204)
.++.|+.+-|...|..
T Consensus 38 ~d~~iD~~~L~~yL~g 53 (140)
T PF13075_consen 38 DDQSIDFERLAPYLGG 53 (140)
T ss_pred CCceecHHHHhhhcCC
Confidence 3455666666665543
No 287
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=28.68 E-value=66 Score=21.13 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.8
Q ss_pred CCCcccHHHHHHHHHH
Q 028784 81 GDGKISALELRAYFGS 96 (204)
Q Consensus 81 ~~g~i~~~el~~~l~~ 96 (204)
++..|+..|+...+..
T Consensus 9 n~eiIt~sel~~~~~~ 24 (118)
T PF09312_consen 9 NDEIITQSELEQRLAQ 24 (118)
T ss_dssp SSSEEEHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHH
Confidence 3456777777666553
No 288
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=28.58 E-value=1.6e+02 Score=18.76 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHH
Q 028784 84 KISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGL 163 (204)
Q Consensus 84 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el 163 (204)
.|+..+++.+.+.+| +++.++..+-.....+ ..+.-..++.. |=.-....=+...|
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d-----~~Eq~~qmL~~-----------------W~~~~G~~a~~~~L 72 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQD-----TAEQKVQLLRA-----------------WYQSHGKTGAYRTL 72 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCC-----hHHHHHHHHHH-----------------HHHHhCCCchHHHH
Confidence 567777888888877 6777777766543221 13333333332 11111112235778
Q ss_pred HHHHHHhCCCCCHHHHHHHHHH
Q 028784 164 QRMLNRLGDSKSYDECVAMIQV 185 (204)
Q Consensus 164 ~~~l~~~g~~~~~~~~~~~~~~ 185 (204)
.+.|+.++.....+.+..+++.
T Consensus 73 i~aLr~~~l~~~Ad~I~~~l~~ 94 (97)
T cd08316 73 IKTLRKAKLCTKADKIQDIIEA 94 (97)
T ss_pred HHHHHHccchhHHHHHHHHHHh
Confidence 8888888887777777777653
No 289
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=28.54 E-value=1.2e+02 Score=23.31 Aligned_cols=52 Identities=12% Similarity=0.009 Sum_probs=26.2
Q ss_pred CCCcccHHHHHHHHhhccC-CCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHH
Q 028784 117 GDSLLDFQDFTRMLLKDDR-GDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 117 ~~g~i~~~eF~~~~~~~~~-~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~ 169 (204)
.||.|+-.|.- ....... -....+.-..+.+.|........+.+++.+.+..
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 46777777765 3333211 1122333344455555444455666666666554
No 290
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=28.35 E-value=1.8e+02 Score=19.22 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=47.8
Q ss_pred CCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCce
Q 028784 115 TDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVL 194 (204)
Q Consensus 115 ~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i 194 (204)
..+...|+.+-=+.++....... ....+..-.+.+...+...|+.+.-.+++.=.. .++.-+..+|.++---+
T Consensus 35 ~~~qr~l~~e~Ai~~W~llf~~~-~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~------~~~~dls~Yde~~AWP~ 107 (117)
T PF03556_consen 35 EEGQRSLPLETAIAYWRLLFSGR-FFPLLDSWIEFLEEKYKKAISKDTWNQFLDFFK------TVDEDLSNYDEEGAWPS 107 (117)
T ss_dssp -TT-SSEEHHHHHHHHHHHTTTT-SSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHHH------H-HCCHCC--TTSSS-H
T ss_pred CcccCCCCHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHcCCcCcChhHHHHHHHHHH------hcCccccCCCCCCCCcH
Confidence 34456788888777777655422 124455555555556677899998777764321 11344666776666678
Q ss_pred eHHHHHHhh
Q 028784 195 DYHEFSQMM 203 (204)
Q Consensus 195 ~~~eF~~~l 203 (204)
-++||++.+
T Consensus 108 liDeFVe~~ 116 (117)
T PF03556_consen 108 LIDEFVEWL 116 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888775
No 291
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=28.22 E-value=1.4e+02 Score=18.49 Aligned_cols=13 Identities=0% Similarity=0.194 Sum_probs=7.9
Q ss_pred cccHHHHHHHHhh
Q 028784 120 LLDFQDFTRMLLK 132 (204)
Q Consensus 120 ~i~~~eF~~~~~~ 132 (204)
.++|++++.-++.
T Consensus 19 ~~s~e~L~~~v~~ 31 (83)
T cd06404 19 SISLEELCNEVRD 31 (83)
T ss_pred CcCHHHHHHHHHH
Confidence 4666666665554
No 292
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=28.02 E-value=1.6e+02 Score=18.37 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHhhCCCCCCccc---HHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCC
Q 028784 101 MSYEEARAAIDDFDTDGDSLLD---FQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDS 173 (204)
Q Consensus 101 ~~~~~~~~l~~~~d~~~~g~i~---~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~ 173 (204)
++...+.+|.+.... ..|+ |+|....+.... ++.+..+-..-.-.+--.|+.+++.-+++..|.+
T Consensus 14 i~k~~I~RLarr~Gv---kRIS~d~y~e~~~~l~~~l-----~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 14 ITKPAIRRLARRGGV---KRISGGVYDEVRNVLKSYL-----EDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred CCHHHHHHHHHHcCc---chhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 445555555555322 2344 555555554421 1333444444444555579999999988887754
No 293
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.58 E-value=94 Score=15.72 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHhCCCCC
Q 028784 159 TPKGLQRMLNRLGDSKS 175 (204)
Q Consensus 159 ~~~el~~~l~~~g~~~~ 175 (204)
+.++|+..|...|+..+
T Consensus 5 s~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 44566666666665443
No 294
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=27.13 E-value=2.2e+02 Score=24.15 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=61.3
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccC---CCCChHHHHHHHHHhccCCCC
Q 028784 80 DGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDR---GDGDDEDLKKAFEMFELEKKG 156 (204)
Q Consensus 80 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~---~~~~~~~l~~~f~~~D~~~~G 156 (204)
+.++.++..++.++|+.+|.+ ....--.++.-...++.|.+ -.|...+..... .......+..+=+.+-.||.
T Consensus 46 ~~~~~~~l~~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGSt--caF~~SILr~~g~rtG~yTSPHLl~vrErIriNGq- 121 (496)
T KOG2525|consen 46 DNPQGLTLPRMRKLLERLGNP-EDQNSLNIIHVAGTKGKGST--CAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQ- 121 (496)
T ss_pred CCccccCHHHHHHHHHHhCCh-hhhhheeEEEEecCCCCcch--HHHHHHHHHhcccccccccChhhcchhheEEECCE-
Confidence 456788999999999999977 33333344555555666643 455554433211 12222344444445555543
Q ss_pred eeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 157 CITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 157 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.|+.+.|.+++- ++..+++..-.++.++-+|=+|+-.+
T Consensus 122 pIS~e~F~~~f~---------~v~~~lk~~~~~~~~~p~yF~fLT~l 159 (496)
T KOG2525|consen 122 PISEEKFTKYFW---------EVYERLKSTKLKEVSMPTYFEFLTLL 159 (496)
T ss_pred ECCHHHHHHHHH---------HHHHHHHHhhccccCCCchhhhhHhh
Confidence 577777666653 33344444444455556666665443
No 295
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=27.10 E-value=1.4e+02 Score=19.67 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 177 DECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 177 ~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.....++.... +|.||.+|=++.|
T Consensus 89 ~~~~~IL~~L~---~GeIs~eeA~~~L 112 (113)
T PF09862_consen 89 DERKEILDKLE---KGEISVEEALEIL 112 (113)
T ss_pred hhHHHHHHHHH---cCCCCHHHHHHHh
Confidence 44455555552 5666666655554
No 296
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=26.79 E-value=1.9e+02 Score=18.90 Aligned_cols=42 Identities=10% Similarity=0.234 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028784 84 KISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 84 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 130 (204)
.||.+++..+|...|..+....+..++..+.. ++..+.+.-.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G-----kdIeElI~~a 57 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED-----VNIEEAIKKA 57 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHhc
Confidence 89999999999999999999999999988733 6777777543
No 297
>PF13592 HTH_33: Winged helix-turn helix
Probab=26.58 E-value=1.3e+02 Score=16.97 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=18.1
Q ss_pred CeeCHHHHHHHHHH-hCCCCCHHHHHHHHHHhC
Q 028784 156 GCITPKGLQRMLNR-LGDSKSYDECVAMIQVFD 187 (204)
Q Consensus 156 G~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~d 187 (204)
+..+..++..++.. +|+.++..-+-.+++.++
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 34555566665544 366666666666665553
No 298
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=26.52 E-value=2e+02 Score=19.08 Aligned_cols=57 Identities=7% Similarity=0.043 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
....+.++...+..+-...++.+++...+. ++...+.++|+.. -.+++.+|+..++.
T Consensus 7 ~~~~i~~~~~~I~~~~~~~~sl~~lA~~~g-----~S~~~l~r~Fk~~-----~G~s~~~~l~~~Rl 63 (127)
T PRK11511 7 DAITIHSILDWIEDNLESPLSLEKVSERSG-----YSKWHLQRMFKKE-----TGHSLGQYIRSRKM 63 (127)
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHC-----cCHHHHHHHHHHH-----HCcCHHHHHHHHHH
Confidence 445566666666666666799999887654 8889999999885 23788888877654
No 299
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=25.76 E-value=1.7e+02 Score=19.49 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=21.5
Q ss_pred CCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 155 KGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 155 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
.|.++.+++.+-+...+-.++..++..++..+
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 56777777777666556667777766665554
No 300
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.68 E-value=1.6e+02 Score=22.05 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=31.7
Q ss_pred hccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 150 FELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 150 ~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
+--++.|.+....|..-+..+.-.++..|+..+-+..
T Consensus 160 ~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 160 IVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred EecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 3457889999999999999999999999988875554
No 301
>PHA02335 hypothetical protein
Probab=25.53 E-value=1.7e+02 Score=19.11 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=21.4
Q ss_pred CCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCC
Q 028784 118 DSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKK 155 (204)
Q Consensus 118 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~ 155 (204)
-.+|+++||..-+... .-+...|++|...++
T Consensus 22 p~sVt~ddf~~DlkRi-------~yIkrllKRy~~~~~ 52 (118)
T PHA02335 22 PQSVTYDDFEEDLKRF-------KYIKRLFKRYLNTGE 52 (118)
T ss_pred cccccHHHHHHHHHHH-------HHHHHHHHhhcCCCC
Confidence 3568888888777654 456777777775544
No 302
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=25.18 E-value=1.4e+02 Score=16.77 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 162 GLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 162 el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
|.++.|..-|+.++.+.++-++..+
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L~ 40 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQLL 40 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHHH
Confidence 3556666667777777776665443
No 303
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=25.11 E-value=2.9e+02 Score=20.49 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHHHHHHHHhCCC
Q 028784 88 LELRAYFGSIGEY 100 (204)
Q Consensus 88 ~el~~~l~~~~~~ 100 (204)
.+|..+|.++|..
T Consensus 61 ~~f~~~~~~lGvd 73 (223)
T PF04157_consen 61 SQFQSMCASLGVD 73 (223)
T ss_dssp HHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCC
Confidence 4788888888854
No 304
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.99 E-value=3.1e+02 Score=20.82 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCCeeCHHHHHHHHHHhCC------CCCHHHHHHHHHHhCCCCC-CceeHHHHHH
Q 028784 154 KKGCITPKGLQRMLNRLGD------SKSYDECVAMIQVFDTDGN-GVLDYHEFSQ 201 (204)
Q Consensus 154 ~~G~i~~~el~~~l~~~g~------~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~ 201 (204)
+.|.+-.+.+..++..++. ....+.-..+++.+..+-| |.|+++|-+.
T Consensus 167 ~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~ 221 (237)
T TIGR03849 167 EKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVIS 221 (237)
T ss_pred CCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHH
Confidence 3467888888888887754 3456778889999999988 7888887654
No 305
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=24.27 E-value=1.4e+02 Score=22.08 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=43.1
Q ss_pred CCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 028784 117 GDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDT 188 (204)
Q Consensus 117 ~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 188 (204)
..+.+...-|+.++....+ ..| -+--|..|+.+.+++...++..+..++.+.+..+.+.-++
T Consensus 29 ~~~~~~~SK~lS~vLRH~p---------~~~-gl~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 29 EKERVKLSKFLSGVLRHFP---------EAI-GLRLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred cchhhhHHHHHHHHHhcCh---------HHc-CeeeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 3455666777777655322 111 1234678999999999999999999999988888766544
No 306
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=24.07 E-value=1.8e+02 Score=20.12 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=29.1
Q ss_pred CCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 028784 155 KGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDT 188 (204)
Q Consensus 155 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 188 (204)
....|.+|+.+.|+..|+.+|..-+...++.++.
T Consensus 14 ~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 14 EKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 4578999999999999999999988888887765
No 307
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=23.93 E-value=1.3e+02 Score=17.24 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.5
Q ss_pred eeCHHHHHHHHH
Q 028784 157 CITPKGLQRMLN 168 (204)
Q Consensus 157 ~i~~~el~~~l~ 168 (204)
.++.+||..+|.
T Consensus 32 ~~s~~eL~~fL~ 43 (60)
T PF08672_consen 32 DISLEELQEFLD 43 (60)
T ss_dssp T--HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 344444444443
No 308
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=23.91 E-value=1.6e+02 Score=16.99 Aligned_cols=14 Identities=50% Similarity=0.570 Sum_probs=4.4
Q ss_pred CCCHHHHHHHHHhh
Q 028784 100 YMSYEEARAAIDDF 113 (204)
Q Consensus 100 ~~~~~~~~~l~~~~ 113 (204)
.++.+++..++..+
T Consensus 14 ~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 14 DLSREEAKAAFDAI 27 (66)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 33344444443333
No 309
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=23.88 E-value=1.3e+02 Score=18.84 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=30.2
Q ss_pred cccHHHHHHH-HhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHH
Q 028784 120 LLDFQDFTRM-LLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMI 183 (204)
Q Consensus 120 ~i~~~eF~~~-~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 183 (204)
.|++.+++.. +... ......=..+-+.+- =|+....+|.+-|..+| +|.++++.++
T Consensus 30 ~it~~dL~~~GL~g~---~~s~~rR~~l~~~L~---iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 30 EITWEDLIELGLIGG---PDSKERREKLGEYLG---IGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred cCCHHHHHHCCCCCC---ccHHHHHHHHHHHHC---CCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 4888888765 2111 111222222333333 26777777777777666 5666666554
No 310
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=23.64 E-value=1.5e+02 Score=16.79 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q 028784 63 KITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDT 115 (204)
Q Consensus 63 ~~~~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~ 115 (204)
+.....-|+.+|.... ..+.++..++...|. ++...+..+++.+..
T Consensus 3 t~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~ 48 (60)
T PF01325_consen 3 TESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE 48 (60)
T ss_dssp SCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH
Confidence 4455677888888776 567899999988775 777777777777643
No 311
>PF15173 FAM180: FAM180 family
Probab=23.57 E-value=2.5e+02 Score=19.21 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhhcCCCCCcccHH--HH---------HHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 028784 66 KEDELKQVFRHFDGDGDGKISAL--EL---------RAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLL 131 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~--el---------~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 131 (204)
..--++-++..++-+.+|.|.+. |+ ..+|..+ ++-+-.++.++...+. +..|.+..++|-..+.
T Consensus 27 v~llfE~Llagl~i~~~g~~~i~DeELASlR~~~~l~~ic~~v-iPk~l~di~rl~~~ls-~~~g~L~~~DFErtlL 101 (137)
T PF15173_consen 27 VELLFEFLLAGLEIDPDGQFSIQDEELASLRKARRLEVICQDV-IPKSLPDIRRLSAQLS-QHRGPLSPEDFERTLL 101 (137)
T ss_pred HHHHHHHHHccceECCCCceeecCHHHhcccchhHHHHHHHHH-CCCcHHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence 33444556666666767777664 33 3334332 5666778888888873 3456888999976543
No 312
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=23.57 E-value=1.7e+02 Score=17.37 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=22.3
Q ss_pred eeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q 028784 157 CITPKGLQRMLNRLGDSKSYDECVAMIQVFDT 188 (204)
Q Consensus 157 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~ 188 (204)
.-+-+||...|...|+.+|...+-.-++.+..
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~~ 50 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELGA 50 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT-
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcCc
Confidence 67889999999999999999888777777643
No 313
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.55 E-value=2.4e+02 Score=22.60 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHHHH--HhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHH
Q 028784 90 LRAYFG--SIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRML 167 (204)
Q Consensus 90 l~~~l~--~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l 167 (204)
|...+. ++|.......+..+++. |.|+.+|=+..+..... ....+.+...++.++ ||.+||.+++
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~IR~------G~itReeal~~v~~~d~-~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDIRS------GRITREEAIELVKEYDG-EFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHHHc------CCCCHHHHHHHHHHhcc-cccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 444443 46877777777777654 88999999998887433 334577888888888 7888888775
No 314
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=23.25 E-value=2.2e+02 Score=21.28 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHH-HHHhCC---CCCHHHHHHHHHHhCCCCCC
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRM-LNRLGD---SKSYDECVAMIQVFDTDGNG 192 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~-l~~~g~---~~~~~~~~~~~~~~d~~~~g 192 (204)
+.-+...-+ .+.|.|+.+|+++- +..-+. .++++++...+...-.=++|
T Consensus 103 iEvC~at~~-~nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~g 155 (249)
T KOG3341|consen 103 IEVCLATKH-TNGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGSG 155 (249)
T ss_pred HHHHHHhhc-ccCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCCC
Confidence 333444444 34579999999984 443333 37777776666655444444
No 315
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=23.25 E-value=99 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhhcCCCCCcccHHHHHHHHHHhC
Q 028784 66 KEDELKQVFRHFDGDGDGKISALELRAYFGSIG 98 (204)
Q Consensus 66 ~~~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~ 98 (204)
....+..+| .+.....+.-+.+||...+....
T Consensus 287 ~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~ 318 (445)
T PF13608_consen 287 EEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVN 318 (445)
T ss_pred HHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcC
Confidence 344555555 55444456777777777776543
No 316
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=23.21 E-value=1.9e+02 Score=18.36 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=20.5
Q ss_pred eeCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 028784 157 CITPKGLQRMLNRLGDSKSYDECVAMIQ 184 (204)
Q Consensus 157 ~i~~~el~~~l~~~g~~~~~~~~~~~~~ 184 (204)
.|+.+++.++.+--.+.+++++.+.+..
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~ 29 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFAT 29 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHH
Confidence 4778888888777777888877665443
No 317
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=22.85 E-value=3.5e+02 Score=20.58 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=37.7
Q ss_pred CCCcccHHHHHHHHHHhCC------CCCHHHHHHHHHhhCCCCC-CcccHHHHHHH
Q 028784 81 GDGKISALELRAYFGSIGE------YMSYEEARAAIDDFDTDGD-SLLDFQDFTRM 129 (204)
Q Consensus 81 ~~g~i~~~el~~~l~~~~~------~~~~~~~~~l~~~~d~~~~-g~i~~~eF~~~ 129 (204)
+.|.+..+.+..++..++. .+..+.-.++++.+..+-+ +.|+++|-+.+
T Consensus 167 ~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~L 222 (237)
T TIGR03849 167 EKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISL 222 (237)
T ss_pred CCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHH
Confidence 4567888888888887653 3567778888898888877 78998887654
No 318
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=22.78 E-value=1.4e+02 Score=18.28 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=10.8
Q ss_pred CCCeeCHHHHHHHHHHh
Q 028784 154 KKGCITPKGLQRMLNRL 170 (204)
Q Consensus 154 ~~G~i~~~el~~~l~~~ 170 (204)
..|.|+.+.|...|-.+
T Consensus 32 ~~~~~tVealV~aL~el 48 (81)
T cd07357 32 RSGHISVDALVMALFEL 48 (81)
T ss_pred HcCCCCHHHHHHHHHHH
Confidence 35667777777666544
No 319
>PRK10945 gene expression modulator; Provisional
Probab=22.54 E-value=1.9e+02 Score=17.37 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=22.5
Q ss_pred cHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh
Q 028784 122 DFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL 170 (204)
Q Consensus 122 ~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~ 170 (204)
+-.||+--++. ....+.+..+|...- ..|+..|+..+..+.
T Consensus 7 tk~dyL~~fRr----css~eTLEkvie~~~----~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 7 TKTDYLMRLRR----CQTIDTLERVIEKNK----YELSDDELAVFYSAA 47 (72)
T ss_pred cHHHHHHHHHh----cCcHHHHHHHHHHhh----ccCCHHHHHHHHHHH
Confidence 44566665555 344555666554332 356666666666543
No 320
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=22.44 E-value=2e+02 Score=18.08 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=21.6
Q ss_pred CCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Q 028784 155 KGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGN 191 (204)
Q Consensus 155 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~ 191 (204)
.|.|+.+|-.+ -+.+|.+|+......++..+.
T Consensus 47 ~Glis~~EA~~-----rY~Ls~eEf~~W~~av~rhge 78 (90)
T PF06627_consen 47 GGLISVEEACR-----RYGLSEEEFESWQRAVDRHGE 78 (90)
T ss_dssp CTTS-HHHHHH-----CTTSSHHHHHHHHHHCCT--T
T ss_pred cCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHhH
Confidence 47888777655 344899999998888876553
No 321
>PTZ00015 histone H4; Provisional
Probab=22.40 E-value=2.3e+02 Score=18.36 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=19.3
Q ss_pred HHHHHHHhccCCCCeeCHHHHHHHHHHhCCC
Q 028784 143 LKKAFEMFELEKKGCITPKGLQRMLNRLGDS 173 (204)
Q Consensus 143 l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~ 173 (204)
+..+-...+-.+--.|+.+++.-+++..|.+
T Consensus 68 ~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 68 VRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 3334333444455578888888888776643
No 322
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=22.37 E-value=2.3e+02 Score=18.39 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.9
Q ss_pred CCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q 028784 153 EKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFD 187 (204)
Q Consensus 153 ~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 187 (204)
.+. .||.+.+..+|...|+.+....+..+...+.
T Consensus 13 ~g~-~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 13 AGK-EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred cCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 444 7999999999999999999888888887773
No 323
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=22.20 E-value=44 Score=20.30 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeH
Q 028784 154 KKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDY 196 (204)
Q Consensus 154 ~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~ 196 (204)
.+|.=+..+|-.+|..+|-.+=+..++-|+..+. .+.|.+.+
T Consensus 37 dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt-R~tgF~E~ 78 (88)
T PF15144_consen 37 DSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT-RSTGFMEF 78 (88)
T ss_pred ccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh-cccCceec
Confidence 3444455567777777776666666777777773 34454443
No 324
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=22.05 E-value=1.1e+02 Score=19.89 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=5.3
Q ss_pred CCCHHHHHHHHH
Q 028784 173 SKSYDECVAMIQ 184 (204)
Q Consensus 173 ~~~~~~~~~~~~ 184 (204)
.+++++++.|+.
T Consensus 100 r~~ee~l~~iL~ 111 (117)
T PF03874_consen 100 RFSEEDLEEILD 111 (117)
T ss_dssp TSTHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 344444444443
No 325
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=21.86 E-value=59 Score=25.05 Aligned_cols=122 Identities=15% Similarity=0.225 Sum_probs=55.4
Q ss_pred cchHHHHHHHHhhhcCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChH
Q 028784 64 ITKEDELKQVFRHFDGD--GDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDE 141 (204)
Q Consensus 64 ~~~~~~l~~~f~~~D~~--~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~ 141 (204)
......+..++.-|-.+ ....++.+|....-.-+...+....++.++..+-..+--..+..+|...+..
T Consensus 60 ~pTy~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~k~~~~~~~~~Fk~~L~~--------- 130 (265)
T PF09412_consen 60 KPTYAAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVSKGLAPSDEAEFKKQLKN--------- 130 (265)
T ss_dssp TSTHHHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSS-SSHHHHHHHHHH---------
T ss_pred CCHHHHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---------
Confidence 55667777888777554 3447777766554443333344444555554443333345677788877654
Q ss_pred HHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCceeHHHHH
Q 028784 142 DLKKAFEMFELEKKGCITPKGLQRMLNRLGDSK--SYDECVAMIQVFDTDGNGVLDYHEFS 200 (204)
Q Consensus 142 ~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~--~~~~~~~~~~~~d~~~~g~i~~~eF~ 200 (204)
.-|..|... .|.++..-|.+++- |+.- .-.-+...++.+-..+.|.|+|..|+
T Consensus 131 ---iWF~~Y~R~-~~~~dSSGFEHVFv--GE~k~~~V~G~HNWi~fy~~Ek~g~~dY~Gy~ 185 (265)
T PF09412_consen 131 ---IWFGLYSRG-SGGLDSSGFEHVFV--GEIKGGEVSGFHNWIQFYLQEKSGNVDYKGYI 185 (265)
T ss_dssp ---HHTS-B-SS-TTS--B-HHHHHTT--S-SSTTS------HHHHHHHHHTTSEEEEEE-
T ss_pred ---hCCccccCC-CCCCCCcccceeee--eeecCCeEeeeEHHHHHHHHHhcCCceEEEEE
Confidence 234444433 23355556666653 2211 11122334444444455666665443
No 326
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.84 E-value=2.3e+02 Score=18.35 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 146 AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 146 ~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
+++.+... .+.+|.+|+.+.|+..+..++..-+...++.+
T Consensus 13 Il~~l~~~-~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 13 ILELLKES-PEHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp HHHHHHHH-SSSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 34444433 23899999999999888888888777777666
No 327
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=21.81 E-value=3.7e+02 Score=20.53 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=26.6
Q ss_pred cHHHHHHHHhhccCC-CCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh
Q 028784 122 DFQDFTRMLLKDDRG-DGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL 170 (204)
Q Consensus 122 ~~~eF~~~~~~~~~~-~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~ 170 (204)
++..|+.++...... -.-...-...|..+...|. .|+-++|..++..+
T Consensus 7 e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~Gk-iLeg~~Ld~aL~~~ 55 (256)
T PF14932_consen 7 EFESFLDWFCSNVNESNVLSEEELQAFEELQKSGK-ILEGEALDEALKTI 55 (256)
T ss_pred cHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCC-cCCHHHHHHHHHHc
Confidence 445555555543221 1112334556666666666 77777777777776
No 328
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=21.75 E-value=99 Score=22.37 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=22.2
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHhh
Q 028784 165 RMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 203 (204)
Q Consensus 165 ~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 203 (204)
.++..++..+++++++.+...+.. +-=.++|..|.+++
T Consensus 85 ~~~~~L~~~Lt~~Qie~vkd~mTy-g~v~~T~k~y~~mv 122 (188)
T PF12875_consen 85 DYMAKLSKYLTEEQIEQVKDGMTY-GVVPFTYKGYLDMV 122 (188)
T ss_dssp HHHHHHTTT--HHHHHHHHHHCTT-THHHHHHHHHHHH-
T ss_pred HHHHHHHhhcCHHHHHHHHccccc-eehhhhHHHHHHHc
Confidence 345556777888888888777742 23346666766654
No 329
>PF03586 Herpes_UL36: Herpesvirus UL36 tegument protein; InterPro: IPR005210 The UL36 open reading frame (ORF) encodes the largest Human herpesvirus 1 (HHV-1) protein, a 270 kDa polypeptide designated VP1/2, which is also a component of the virion tegument. A null mutation in the UL36 gene of herpes simplex virus type 1 results in accumulation of unenveloped DNA-filled capsids in the cytoplasm of infected cells []. The region which defines these sequences only covers a small central part of this large protein.; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity
Probab=21.52 E-value=3.8e+02 Score=20.55 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=15.5
Q ss_pred HHHhhCCCCCCcccHHHHHHHHhhc
Q 028784 109 AIDDFDTDGDSLLDFQDFTRMLLKD 133 (204)
Q Consensus 109 l~~~~d~~~~g~i~~~eF~~~~~~~ 133 (204)
++... .-++|.|+|.+++.-+...
T Consensus 126 iL~~A-~a~~G~idy~~~V~~l~~d 149 (253)
T PF03586_consen 126 ILEHA-AAGGGNIDYYDAVGRLSGD 149 (253)
T ss_pred HHHHH-HccCCCCcHHHHHHHHHHH
Confidence 34444 4456778888888776653
No 330
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=5.1e+02 Score=21.99 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=21.4
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028784 93 YFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRML 130 (204)
Q Consensus 93 ~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~ 130 (204)
.|++-|..++++.-..+|+...--.+..+.|.|+-.++
T Consensus 140 ~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv 177 (625)
T KOG4422|consen 140 RMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFV 177 (625)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHh
Confidence 44556788888776667666433233334455444444
No 331
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=21.37 E-value=46 Score=18.41 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=17.9
Q ss_pred HhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 028784 74 FRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAID 111 (204)
Q Consensus 74 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~ 111 (204)
|..+...|++.++..|+...+.. ..+.....++++++
T Consensus 12 ~dii~~~g~~~ls~~eia~~l~~-~~p~~~~~L~RimR 48 (51)
T PF08100_consen 12 PDIIHNAGGGPLSLSEIAARLPT-SNPSAPPMLDRIMR 48 (51)
T ss_dssp HHHHHHHTTS-BEHHHHHHTSTC-T-TTHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHcCC-CCcchHHHHHHHHH
Confidence 33333344577888887766553 11222344555554
No 332
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=21.35 E-value=1.8e+02 Score=16.80 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=17.4
Q ss_pred CCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q 028784 155 KGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQ 201 (204)
Q Consensus 155 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 201 (204)
+|.+...+|...++. ....++...-|.-++.+|++
T Consensus 21 ~g~v~ls~l~~~~~~------------~~~~f~~~~yG~~~l~~ll~ 55 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKK------------KYPDFDPRDYGFSSLSELLE 55 (74)
T ss_dssp TSSEEHHHHHHHHHH------------HHTT--TCCTTSSSHHHHHH
T ss_pred CceEEHHHHHHHHHH------------HCCCCCccccCCCcHHHHHH
Confidence 456666666665532 22444555555555555554
No 333
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=21.25 E-value=2.6e+02 Score=20.77 Aligned_cols=63 Identities=6% Similarity=0.130 Sum_probs=40.3
Q ss_pred cccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHHHHHh
Q 028784 120 LLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAMIQVF 186 (204)
Q Consensus 120 ~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~ 186 (204)
..+|.+...++...+...+....+...|+.|.+.+ .++ -+..-++.. |-.++++++..|+..+
T Consensus 166 gfdf~AAk~L~~~KCNkCHTl~SVed~lrkYkKkG--kid--~iVkrMqa~PnSgIt~eDa~~I~~YL 229 (233)
T PF10643_consen 166 GFDFAAAKALFDRKCNKCHTLKSVEDALRKYKKKG--KID--KIVKRMQAVPNSGITDEDAPQIMMYL 229 (233)
T ss_dssp T--HHHHHHHHHHHTTSSS-SHHHHHHHHHTTTTT---HH--HHHHHHHHSTT----HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhccccccHHHHHHHHHHHHhcC--CHH--HHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 46788888888888887888888999999888654 333 233444444 7778999988887654
No 334
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=21.21 E-value=3.7e+02 Score=20.33 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=37.6
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHHh-CCCCCHHHHHHHHHHh
Q 028784 123 FQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNRL-GDSKSYDECVAMIQVF 186 (204)
Q Consensus 123 ~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~ 186 (204)
|+..+.++.. ...+.+...|+.|..++.-.|..+=+..+-+.+ .+.++++|+-..++..
T Consensus 104 ~ER~lwlla~-----~d~qi~~~l~nefe~~~~~qv~kel~ekls~dftse~vS~ee~~~ti~k~ 163 (266)
T KOG2616|consen 104 FERVLWLLAG-----SDSQITRALMNEFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKI 163 (266)
T ss_pred HHHHHHHHhC-----ChHHHHHHHHHHHhhCCceecCHHHHHHHHHhhhhhhcCcHHHHHHHHHH
Confidence 4444444443 445678889999988887777765555444444 5567777766666555
No 335
>PRK03968 DNA primase large subunit; Validated
Probab=20.97 E-value=3.6e+02 Score=22.07 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=32.9
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 79 GDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 79 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
..+.+.|...++..+-+.++..+.++++..+.-. ..|.+.+|+.++..
T Consensus 116 ~~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~------y~i~~~df~~l~gs 163 (399)
T PRK03968 116 VVNAIEIPEKDRKILERVRGRELPPEELEDLLPE------YKIKWKDLLDLIGS 163 (399)
T ss_pred ccccccccchhhhhhhhhcccccCHHHHHHHhhh------ccccHHHHHHhcCC
Confidence 3456677777777777777777778877777655 35677777775543
No 336
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=20.92 E-value=2.2e+02 Score=22.96 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=44.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 70 LKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 70 l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
+.-+...+|..+.|.++.--.+.+|..+....-...++.+|..+ .|..|-+.+-.|..++..
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH
Confidence 34444567999999999999998888775555566677777776 445676666666666654
No 337
>PRK00441 argR arginine repressor; Provisional
Probab=20.91 E-value=2.3e+02 Score=19.67 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=30.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDFD 114 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d 114 (204)
.+..+.+|+...|...|+.++...+.+-+..+.
T Consensus 16 ~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 16 KEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred cCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 578899999999999999999999999888875
No 338
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.89 E-value=2.1e+02 Score=22.87 Aligned_cols=98 Identities=13% Similarity=0.216 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhh--cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHH
Q 028784 66 KEDELKQVFRHF--DGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDL 143 (204)
Q Consensus 66 ~~~~l~~~f~~~--D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 143 (204)
...++..+...+ |.|....+--+||......+.......-++-|.+.|...=+|.+=|+|...-+.. ....+
T Consensus 39 ~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~------~nP~l 112 (351)
T CHL00185 39 NIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKD------KNPLL 112 (351)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcc------CCcHH
Confidence 344555555544 6666677888888776655544444455666666676666788888877666543 23577
Q ss_pred HHHHHHhccC---CCCeeCHHHHHHHHHHhCCCC
Q 028784 144 KKAFEMFELE---KKGCITPKGLQRMLNRLGDSK 174 (204)
Q Consensus 144 ~~~f~~~D~~---~~G~i~~~el~~~l~~~g~~~ 174 (204)
..+|..+..| +.|.| .+.|..+|+.+
T Consensus 113 ae~F~lMaRDEARHAGFl-----Nkam~df~l~l 141 (351)
T CHL00185 113 AEGFLLMSRDEARHAGFL-----NKAMSDFNLSL 141 (351)
T ss_pred HHHHHHHhhhhHHHhhhH-----HHHHHHcCccc
Confidence 8888877554 23443 34555555543
No 339
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=20.84 E-value=1.4e+02 Score=17.34 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=17.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDF 113 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 113 (204)
+..++..++...+...|..++...|...+...
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~ 42 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLREA 42 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHHc
Confidence 45688888888887778889999888888775
No 340
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=20.83 E-value=2.5e+02 Score=25.23 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHh
Q 028784 141 EDLKKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQM 202 (204)
Q Consensus 141 ~~l~~~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 202 (204)
...+.+|+..-+.+.-.+..+++... +.+++++..+..++...++.|+++.|.+.
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~ 458 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEW 458 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHH
Confidence 34566777777666666766666655 46777777777777766666888777654
No 341
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=20.75 E-value=87 Score=19.17 Aligned_cols=34 Identities=3% Similarity=0.158 Sum_probs=15.5
Q ss_pred HhccCCCCeeCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 028784 149 MFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVF 186 (204)
Q Consensus 149 ~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 186 (204)
.|..+..+.++.++.+..+. ......+..+...+
T Consensus 45 ~w~~n~~~~lt~~~~~~~i~----~~d~~~~~ri~~FL 78 (86)
T PF04433_consen 45 EWRKNPNKYLTKTDARKLIK----GIDVNKIRRIYDFL 78 (86)
T ss_dssp HHHHHTTS---HHHHHHHTT----SSSHHHHHHHHHHH
T ss_pred HHHHCCCCcccHHHHHHHcc----ccCHHHHHHHHHHH
Confidence 33445566777777666654 23444444444443
No 342
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.23 E-value=6.3e+02 Score=22.61 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHhhCCC--------CCCcccHHHHHHHHhhccCCCCChHHHHHHHHHhccCCCCeeCHHHHHHHHHH
Q 028784 101 MSYEEARAAIDDFDTD--------GDSLLDFQDFTRMLLKDDRGDGDDEDLKKAFEMFELEKKGCITPKGLQRMLNR 169 (204)
Q Consensus 101 ~~~~~~~~l~~~~d~~--------~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~f~~~D~~~~G~i~~~el~~~l~~ 169 (204)
++.++++.++..+..+ ..+.+++......++....+......+..+++.+..-..-.=+.+++...++.
T Consensus 503 l~rqevq~Lld~l~~~~p~lvEei~p~~is~s~iqkVLq~LL~E~VsIRdl~tIlEtlad~a~~~kd~~~L~e~VR~ 579 (696)
T COG1298 503 LGRQEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQKVLQNLLKERVSIRDLPTILETLADYAPITKDPDELTEKVRQ 579 (696)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHhccCccCHHHHHHHHHHHHhcCCccccHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 3444555555444322 24579999999999888877778888888888876444333477777776654
No 343
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=20.15 E-value=2.2e+02 Score=17.25 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCC
Q 028784 87 ALELRAYFGSIGEYMSYEEARAAIDDFDTDGDS 119 (204)
Q Consensus 87 ~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g 119 (204)
...|..++.++|..-++..|..++.......+-
T Consensus 5 ~h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~~ 37 (74)
T PF10982_consen 5 QHTLSNLFAQLGLDSSDEAIEAFIETHQLPADV 37 (74)
T ss_dssp -THHHHHHHHHTS---HHHHHHHHHHS---TTS
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHhCCCCCCC
Confidence 456778888999999999999998887654443
No 344
>PRK08181 transposase; Validated
Probab=20.15 E-value=2.3e+02 Score=21.84 Aligned_cols=48 Identities=6% Similarity=-0.079 Sum_probs=34.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 028784 82 DGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLK 132 (204)
Q Consensus 82 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 132 (204)
.+.|+.+.+...|+.+..+--.+.+..+.... ..+.++|.||+..+..
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll~ 51 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIAE 51 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHHH
Confidence 46888889999999988664455555554433 3356899999987754
No 345
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.08 E-value=1.1e+02 Score=21.77 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=51.7
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhccCCCCChHHHHH--
Q 028784 68 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIDDFDTDGDSLLDFQDFTRMLLKDDRGDGDDEDLKK-- 145 (204)
Q Consensus 68 ~~l~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~-- 145 (204)
..|.++...+| +-.-.|.-.-.--+|..-|+..+...+.+|+... -.-|+.-+..-. ....+++.
T Consensus 71 ~~l~efl~qLd-dYtP~IPDavt~~yL~~aGf~~~D~rv~RLvsLa---------AQKfvSDIa~DA---~Q~~k~r~~~ 137 (176)
T KOG3423|consen 71 THLEEFLAQLD-DYTPTIPDAVTDHYLKKAGFQTSDPRVKRLVSLA---------AQKFVSDIANDA---LQHSKIRTKT 137 (176)
T ss_pred hHHHHHHHHHh-cCCCCCcHHHHHHHHHhcCCCcCcHHHHHHHHHH---------HHHHHHHHHHHH---HHHhhhcccc
Confidence 44444444444 3344666655666666677777766666666542 123332221100 00000000
Q ss_pred ---HHHHhccCCCCeeCHHHHHHHHHHhCCCCCH
Q 028784 146 ---AFEMFELEKKGCITPKGLQRMLNRLGDSKSY 176 (204)
Q Consensus 146 ---~f~~~D~~~~G~i~~~el~~~l~~~g~~~~~ 176 (204)
-=+..-+++.-.++.++|..+|.++|+++..
T Consensus 138 ~~~~~k~~~kdkK~tLtmeDL~~AL~EyGinv~r 171 (176)
T KOG3423|consen 138 AIGKDKKQAKDKKYTLTMEDLSPALAEYGINVKR 171 (176)
T ss_pred ccccccccccccceeeeHHHHHHHHHHhCcccCC
Confidence 0012335667789999999999999998764
Done!