BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028785
         (204 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
 pdb|4A5W|B Chain B, Crystal Structure Of C5b6
 pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
          Length = 913

 Score = 28.9 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 56  WGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSL 115
           WG   S +   D+ YK  + + C  P  Q  R  ++ E    +++ C+F I+E      +
Sbjct: 547 WGCWSSWST-CDATYKRSRTRECNNPAPQ--RGGKRCEGEKRQEEDCTFSIMENNGQPCI 603

Query: 116 QTLDWIIESDVP 127
              + + E D+P
Sbjct: 604 NDDEEMKEVDLP 615


>pdb|1HN0|A Chain A, Crystal Structure Of Chondroitin Abc Lyase I From Proteus
           Vulgaris At 1.9 Angstroms Resolution
          Length = 1021

 Score = 28.9 bits (63), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 105 KIVEKPYNKSLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLF 160
           KI   PY  +LQ  DW+I+S+        +A  +N  R      ++ N Q T   F
Sbjct: 803 KIENMPYQTTLQQGDWLIDSNG-NGYLITQAEKVNVSRQHQVSAENKNRQPTEGNF 857


>pdb|3QTM|A Chain A, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE
          (HIGH RESOLUTION)
 pdb|3QTM|B Chain B, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE
          (HIGH RESOLUTION)
          Length = 346

 Score = 27.3 bits (59), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 49 EDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTED 94
          ED ++  WGL +      ++      + L F  + + DR  R TED
Sbjct: 16 EDNISQLWGLYEXSREKLENDDIDASVSLVFGTIHEADRILRNTED 61


>pdb|3MSV|A Chain A, The Hypoxic Regulator Of Sterol Synthesis Nro1 Is A
           Nuclear Import Adaptor
 pdb|3MSV|B Chain B, The Hypoxic Regulator Of Sterol Synthesis Nro1 Is A
           Nuclear Import Adaptor
          Length = 393

 Score = 26.9 bits (58), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 49  EDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTED 94
           ED ++  WGL +      ++      + L F  + + DR  R TED
Sbjct: 63  EDNISQLWGLYEMSREKLENDDIDASVSLVFGTIHEADRILRNTED 108


>pdb|3QTN|B Chain B, Crystal Structure Of Nro1ETT1 PROTEIN FROM S. POMBE (LOW
          RESOLUTION)
          Length = 346

 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 49 EDKVTITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTED 94
          ED ++  WGL +      ++      + L F  + + DR  R TED
Sbjct: 16 EDNISQLWGLYEMSREKLENDDIDASVSLVFGTIHEADRILRNTED 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,746,012
Number of Sequences: 62578
Number of extensions: 166355
Number of successful extensions: 358
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)