BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028785
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGS5|NRT31_ARATH High-affinity nitrate transporter 3.1 OS=Arabidopsis thaliana
GN=NRT3.1 PE=1 SV=1
Length = 210
Score = 232 bits (591), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 151/211 (71%), Gaps = 8/211 (3%)
Query: 1 MAARGLLLASIYLSLLVHECYG---VTLFSSLQK-TLQVTTTTKR---GQVLKAGEDKVT 53
MA + +L AS+ + L+ +G V LF L K L VTT R G VL AG+D +
Sbjct: 1 MAIQKILFASLLICSLIQSIHGAEKVRLFKELDKGALDVTTKPSREGPGVVLDAGKDTLN 60
Query: 54 ITWGLNQSLAAGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNK 113
ITW L+ S+ + ++ +K +K++LC+AP SQ DR WRKT D L KDKTC KI+ KPY+K
Sbjct: 61 ITWTLS-SIGSKREAEFKIIKVKLCYAPPSQVDRPWRKTHDELFKDKTCPHKIIAKPYDK 119
Query: 114 SLQTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLD 173
+LQ+ W +E D+PT TYFVRAYA++A HEVAYGQST+D K TNLF +QAI+GRHASLD
Sbjct: 120 TLQSTTWTLERDIPTGTYFVRAYAVDAIGHEVAYGQSTDDAKKTNLFSVQAISGRHASLD 179
Query: 174 IASVCFSVFSIVALFGFFFHEKRKARMSQQK 204
IAS+CFSVFS+VAL FF +EKRKA++ Q K
Sbjct: 180 IASICFSVFSVVALVVFFVNEKRKAKIEQSK 210
>sp|Q9SB67|NRT32_ARATH High-affinity nitrate transporter 3.2 OS=Arabidopsis thaliana
GN=NRT3.2 PE=2 SV=1
Length = 209
Score = 216 bits (551), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 147/209 (70%), Gaps = 5/209 (2%)
Query: 1 MAARGLLLASIYLSLLVHECYGVT---LFSSLQKTLQVTT-TTKRGQVLKAGEDKVTITW 56
MA LL S+ + L+ G LF+ LQ +++VT K VL+AG+D VTITW
Sbjct: 1 MAIHTLLFVSLLIFSLIESSSGGKKDRLFTDLQNSIEVTAKPVKDSGVLEAGKDMVTITW 60
Query: 57 GLNQSLA-AGTDSAYKTMKLQLCFAPVSQKDRAWRKTEDHLNKDKTCSFKIVEKPYNKSL 115
L S A TD+A+KT++++LC+AP+SQ DR WRKT++ L KD++C +IV K Y+K+
Sbjct: 61 KLKSSSAKVDTDTAFKTIQVKLCYAPISQVDRPWRKTDNKLFKDRSCPHEIVSKAYDKTP 120
Query: 116 QTLDWIIESDVPTATYFVRAYALNAERHEVAYGQSTNDQKTTNLFDIQAITGRHASLDIA 175
Q+LDW I D+PT TYFVRAY ++ + HEVAYGQST++ +TTNLF + AI+G H LDIA
Sbjct: 121 QSLDWTIGLDIPTGTYFVRAYGIDGDGHEVAYGQSTDEGRTTNLFSVHAISGHHVGLDIA 180
Query: 176 SVCFSVFSIVALFGFFFHEKRKARMSQQK 204
S FSVFS+V+LF FF EKRKA++ Q++
Sbjct: 181 STFFSVFSVVSLFVFFVMEKRKAKLEQRE 209
>sp|Q8K4E0|ALMS1_MOUSE Alstrom syndrome protein 1 homolog OS=Mus musculus GN=Alms1 PE=1 SV=2
Length = 3251
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 150 STNDQKTTNLFDIQAITGRHASLDIASVCFSVF-----SIVALFGFFFH 193
+ D+KT NL D ++I + SL+I S C S F S+ F+FH
Sbjct: 2534 TVQDRKTENLPDTKSIKQKEGSLEIESECHSAFENTAHSVFRSAKFYFH 2582
>sp|Q31FB1|GSA_THICR Glutamate-1-semialdehyde 2,1-aminomutase OS=Thiomicrospira
crunogena (strain XCL-2) GN=hemL PE=3 SV=1
Length = 426
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 153 DQKTTNLFDIQAITGRHASLDIASVCFSVFSIVALFGFFFHEKRKARMSQQ 203
+ KTT L + G + D A + F+ + A+FGFFF E++ R Q
Sbjct: 325 EAKTTKL-----VNGLQKAADEAGIAFTTNQVGAMFGFFFSEEKDIRRFSQ 370
>sp|Q3A0Y0|ENGB_PELCD Probable GTP-binding protein EngB OS=Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1) GN=engB PE=3 SV=2
Length = 207
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 81 PVSQKDRAW-RKTEDHLNKDKTCS-----FKIVEKPYNKSLQTLDWIIESDVPTATYFVR 134
PVS K +AW R T +L + F I +P ++ LQ LDW+ E ++PT +
Sbjct: 85 PVSVK-KAWGRMTRTYLEERTNLKAVVLLFDIRREPRDEELQLLDWLEELNIPTIPVITK 143
Query: 135 AYALNAERH 143
+ R
Sbjct: 144 VDKVTKNRR 152
>sp|P40071|TMN3_YEAST Transmembrane 9 superfamily member 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TMN3 PE=1 SV=1
Length = 706
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 75 LQLCFAPVSQKDRAWRKTED-HLNKDKTCSFKIVEKPYNKSLQTLD----------WIIE 123
L L + + DR W +D C K + +QTLD W+I+
Sbjct: 97 LHLSLNEIIRGDRKWESDYKLKFGEDNPCETLCARKTTKEGMQTLDKLVREGYVVQWLID 156
Query: 124 SDVPTATYFV 133
++P AT F+
Sbjct: 157 DELPAATTFI 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,342,639
Number of Sequences: 539616
Number of extensions: 2347682
Number of successful extensions: 5479
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5471
Number of HSP's gapped (non-prelim): 13
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)