Query 028791
Match_columns 203
No_of_seqs 222 out of 1167
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.5 7.6E-15 1.6E-19 94.7 2.5 44 154-197 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.4 9E-14 1.9E-18 125.1 3.4 48 154-201 230-278 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 99.2 5E-12 1.1E-16 90.4 3.7 46 152-197 18-73 (73)
4 COG5540 RING-finger-containing 99.2 9.3E-12 2E-16 109.9 3.9 52 151-202 321-373 (374)
5 PHA02929 N1R/p28-like protein; 99.1 2.8E-11 6E-16 104.5 4.1 51 151-201 172-227 (238)
6 KOG0317 Predicted E3 ubiquitin 99.1 3.4E-11 7.5E-16 105.5 3.3 53 147-202 233-285 (293)
7 PLN03208 E3 ubiquitin-protein 99.0 1.5E-10 3.3E-15 96.8 4.2 48 151-201 16-79 (193)
8 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.8E-10 3.8E-15 76.2 3.0 46 153-201 2-48 (50)
9 KOG0823 Predicted E3 ubiquitin 99.0 2.8E-10 6E-15 97.1 4.5 50 149-201 43-95 (230)
10 cd00162 RING RING-finger (Real 99.0 5.4E-10 1.2E-14 69.9 3.8 44 155-200 1-45 (45)
11 PF13923 zf-C3HC4_2: Zinc fing 99.0 3.5E-10 7.5E-15 71.2 2.8 39 156-196 1-39 (39)
12 PF15227 zf-C3HC4_4: zinc fing 99.0 3.5E-10 7.6E-15 72.7 2.8 38 156-196 1-42 (42)
13 COG5243 HRD1 HRD ubiquitin lig 98.9 6.4E-10 1.4E-14 100.7 3.1 52 150-201 284-345 (491)
14 smart00504 Ubox Modified RING 98.8 5.4E-09 1.2E-13 71.3 4.0 44 154-200 2-45 (63)
15 PF00097 zf-C3HC4: Zinc finger 98.8 3.7E-09 7.9E-14 66.7 2.6 39 156-196 1-41 (41)
16 PF12861 zf-Apc11: Anaphase-pr 98.7 6.9E-09 1.5E-13 76.4 3.4 54 148-201 16-82 (85)
17 smart00184 RING Ring finger. E 98.7 9.8E-09 2.1E-13 61.9 3.4 38 156-196 1-39 (39)
18 PF14634 zf-RING_5: zinc-RING 98.7 9.9E-09 2.1E-13 66.2 3.2 44 155-198 1-44 (44)
19 PHA02926 zinc finger-like prot 98.7 5.7E-09 1.2E-13 89.0 2.5 53 149-201 166-230 (242)
20 KOG0320 Predicted E3 ubiquitin 98.7 7.4E-09 1.6E-13 85.5 3.0 50 151-201 129-178 (187)
21 TIGR00599 rad18 DNA repair pro 98.7 9.6E-09 2.1E-13 94.5 3.5 49 150-201 23-71 (397)
22 KOG0802 E3 ubiquitin ligase [P 98.6 1.7E-08 3.6E-13 96.2 2.4 50 151-200 289-340 (543)
23 KOG0287 Postreplication repair 98.6 2.3E-08 4.9E-13 89.8 1.5 47 151-200 21-67 (442)
24 KOG2930 SCF ubiquitin ligase, 98.5 6.9E-08 1.5E-12 73.3 3.5 69 133-201 26-108 (114)
25 COG5574 PEX10 RING-finger-cont 98.5 4.1E-08 8.9E-13 85.4 2.4 49 151-202 213-263 (271)
26 KOG1734 Predicted RING-contain 98.4 6.1E-08 1.3E-12 84.7 1.0 50 152-201 223-281 (328)
27 COG5194 APC11 Component of SCF 98.4 2.9E-07 6.3E-12 66.9 3.0 51 151-201 18-81 (88)
28 PF13445 zf-RING_UBOX: RING-ty 98.4 2.3E-07 4.9E-12 60.1 2.2 38 156-194 1-43 (43)
29 KOG2164 Predicted E3 ubiquitin 98.3 2.1E-07 4.6E-12 87.2 2.3 47 153-202 186-237 (513)
30 COG5432 RAD18 RING-finger-cont 98.3 2.6E-07 5.6E-12 81.7 2.6 46 151-199 23-68 (391)
31 KOG2177 Predicted E3 ubiquitin 98.3 2.2E-07 4.8E-12 77.4 1.7 45 150-197 10-54 (386)
32 PF04564 U-box: U-box domain; 98.3 5.6E-07 1.2E-11 64.1 3.0 47 152-201 3-50 (73)
33 KOG0828 Predicted E3 ubiquitin 98.2 6.5E-07 1.4E-11 83.8 2.0 53 150-202 568-635 (636)
34 KOG4265 Predicted E3 ubiquitin 98.1 1.6E-06 3.4E-11 78.3 3.1 48 151-201 288-336 (349)
35 smart00744 RINGv The RING-vari 98.1 3.1E-06 6.8E-11 56.1 3.3 42 155-197 1-49 (49)
36 KOG1493 Anaphase-promoting com 98.0 1.4E-06 3.1E-11 62.8 0.5 50 152-201 19-81 (84)
37 PF11793 FANCL_C: FANCL C-term 98.0 9.5E-07 2.1E-11 62.7 -0.6 49 153-201 2-66 (70)
38 COG5219 Uncharacterized conser 98.0 2.1E-06 4.6E-11 85.4 1.4 50 150-201 1466-1523(1525)
39 KOG4172 Predicted E3 ubiquitin 97.9 2.3E-06 4.9E-11 58.2 0.2 45 153-200 7-53 (62)
40 KOG0311 Predicted E3 ubiquitin 97.9 1.8E-06 3.9E-11 77.9 -1.3 48 151-201 41-90 (381)
41 KOG0804 Cytoplasmic Zn-finger 97.8 7.7E-06 1.7E-10 75.9 1.7 48 151-200 173-221 (493)
42 KOG4159 Predicted E3 ubiquitin 97.7 1.5E-05 3.2E-10 73.7 2.4 48 151-201 82-129 (398)
43 PF14835 zf-RING_6: zf-RING of 97.6 7.9E-06 1.7E-10 57.2 -0.9 45 152-200 6-50 (65)
44 KOG1039 Predicted E3 ubiquitin 97.6 3.5E-05 7.6E-10 70.0 1.9 50 151-200 159-220 (344)
45 KOG0825 PHD Zn-finger protein 97.4 3.1E-05 6.6E-10 76.1 0.0 50 151-200 121-170 (1134)
46 KOG4445 Uncharacterized conser 97.4 6.1E-05 1.3E-09 67.1 1.3 54 148-201 110-186 (368)
47 KOG3970 Predicted E3 ubiquitin 97.4 0.00016 3.4E-09 62.3 3.3 53 149-202 46-106 (299)
48 KOG0978 E3 ubiquitin ligase in 97.2 9.6E-05 2.1E-09 72.3 0.8 48 151-201 641-689 (698)
49 KOG2879 Predicted E3 ubiquitin 97.2 0.00034 7.5E-09 61.6 3.7 50 150-201 236-287 (298)
50 KOG2660 Locus-specific chromos 97.1 0.00013 2.8E-09 65.5 0.4 50 149-200 11-60 (331)
51 COG5152 Uncharacterized conser 97.0 0.00024 5.3E-09 60.1 0.9 45 152-199 195-239 (259)
52 KOG1785 Tyrosine kinase negati 97.0 0.00028 6.2E-09 65.1 1.3 46 153-201 369-416 (563)
53 KOG0297 TNF receptor-associate 97.0 0.00031 6.7E-09 64.8 1.6 49 150-201 18-67 (391)
54 PF11789 zf-Nse: Zinc-finger o 96.8 0.00064 1.4E-08 46.4 1.8 43 151-195 9-53 (57)
55 KOG1002 Nucleotide excision re 96.6 0.00093 2E-08 63.7 1.6 51 147-200 530-585 (791)
56 KOG1813 Predicted E3 ubiquitin 96.5 0.00082 1.8E-08 59.7 0.5 45 153-200 241-285 (313)
57 KOG1428 Inhibitor of type V ad 96.5 0.002 4.3E-08 67.3 3.1 53 149-201 3482-3544(3738)
58 KOG1941 Acetylcholine receptor 96.5 0.0011 2.3E-08 61.2 1.0 48 151-198 363-413 (518)
59 KOG4692 Predicted E3 ubiquitin 96.3 0.002 4.4E-08 58.8 2.1 50 149-201 418-467 (489)
60 PF05883 Baculo_RING: Baculovi 96.2 0.0033 7.2E-08 50.0 2.3 39 153-191 26-70 (134)
61 PF10367 Vps39_2: Vacuolar sor 95.9 0.0035 7.6E-08 46.4 1.3 33 151-184 76-108 (109)
62 KOG0801 Predicted E3 ubiquitin 95.9 0.0025 5.3E-08 52.5 0.4 31 150-180 174-204 (205)
63 PF12906 RINGv: RING-variant d 95.8 0.0069 1.5E-07 39.6 2.3 40 156-196 1-47 (47)
64 KOG1571 Predicted E3 ubiquitin 95.7 0.0056 1.2E-07 55.7 1.9 46 150-201 302-347 (355)
65 KOG1814 Predicted E3 ubiquitin 95.7 0.0066 1.4E-07 56.3 2.4 39 150-188 181-219 (445)
66 KOG1952 Transcription factor N 95.6 0.0066 1.4E-07 60.5 2.3 49 150-198 188-244 (950)
67 COG5222 Uncharacterized conser 95.4 0.009 2E-07 53.6 2.1 42 154-198 275-318 (427)
68 PF14570 zf-RING_4: RING/Ubox 95.3 0.012 2.7E-07 38.9 1.9 45 156-200 1-47 (48)
69 PHA02825 LAP/PHD finger-like p 95.3 0.016 3.4E-07 47.5 3.0 47 150-200 5-58 (162)
70 KOG3268 Predicted E3 ubiquitin 95.2 0.013 2.8E-07 49.1 2.4 52 151-202 163-229 (234)
71 COG5236 Uncharacterized conser 95.1 0.019 4.1E-07 52.5 3.3 49 149-200 57-107 (493)
72 PF04641 Rtf2: Rtf2 RING-finge 95.1 0.025 5.4E-07 49.3 4.0 50 150-200 110-160 (260)
73 KOG0826 Predicted E3 ubiquitin 94.9 0.022 4.8E-07 51.5 2.9 48 151-200 298-345 (357)
74 KOG4275 Predicted E3 ubiquitin 94.8 0.0052 1.1E-07 54.8 -1.3 41 153-200 300-341 (350)
75 PF14447 Prok-RING_4: Prokaryo 94.6 0.018 3.9E-07 39.1 1.3 45 153-202 7-51 (55)
76 PF08746 zf-RING-like: RING-li 94.5 0.033 7.2E-07 35.8 2.4 41 156-196 1-43 (43)
77 PHA03096 p28-like protein; Pro 94.5 0.021 4.6E-07 50.8 2.0 36 154-189 179-219 (284)
78 KOG1940 Zn-finger protein [Gen 94.5 0.023 5E-07 50.4 2.1 47 152-198 157-204 (276)
79 KOG3039 Uncharacterized conser 94.4 0.039 8.5E-07 48.3 3.4 49 152-200 220-269 (303)
80 KOG3002 Zn finger protein [Gen 93.9 0.035 7.5E-07 49.8 2.2 44 151-201 46-91 (299)
81 KOG2114 Vacuolar assembly/sort 93.5 0.04 8.7E-07 55.2 1.8 43 152-199 839-881 (933)
82 COG5175 MOT2 Transcriptional r 93.4 0.049 1.1E-06 49.8 2.2 49 151-199 12-62 (480)
83 PHA02862 5L protein; Provision 93.3 0.067 1.5E-06 43.3 2.6 48 153-200 2-52 (156)
84 KOG1001 Helicase-like transcri 93.2 0.035 7.5E-07 54.8 1.0 43 154-200 455-499 (674)
85 PF05290 Baculo_IE-1: Baculovi 92.4 0.096 2.1E-06 41.8 2.3 46 152-200 79-131 (140)
86 KOG2817 Predicted E3 ubiquitin 91.8 0.15 3.3E-06 47.1 3.1 49 151-199 332-383 (394)
87 KOG0827 Predicted E3 ubiquitin 91.2 0.014 3E-07 53.9 -4.1 51 151-201 194-245 (465)
88 KOG0298 DEAD box-containing he 91.1 0.074 1.6E-06 55.4 0.5 45 152-199 1152-1197(1394)
89 KOG2932 E3 ubiquitin ligase in 91.1 0.12 2.5E-06 46.8 1.6 44 153-200 90-133 (389)
90 KOG1100 Predicted E3 ubiquitin 89.5 0.18 3.9E-06 42.9 1.4 39 156-201 161-200 (207)
91 KOG0825 PHD Zn-finger protein 89.0 0.16 3.5E-06 50.8 0.9 52 152-203 95-156 (1134)
92 PF14446 Prok-RING_1: Prokaryo 88.5 0.57 1.2E-05 31.8 3.0 44 152-199 4-50 (54)
93 KOG2034 Vacuolar sorting prote 88.3 0.25 5.4E-06 49.9 1.6 36 151-187 815-850 (911)
94 KOG4362 Transcriptional regula 87.7 0.14 3E-06 50.5 -0.5 48 151-201 19-69 (684)
95 PF10272 Tmpp129: Putative tra 87.3 0.48 1E-05 43.6 2.8 28 174-201 311-351 (358)
96 KOG3053 Uncharacterized conser 86.4 0.35 7.5E-06 42.7 1.3 52 149-200 16-81 (293)
97 KOG1812 Predicted E3 ubiquitin 85.9 0.29 6.3E-06 45.2 0.6 37 152-188 145-182 (384)
98 COG5220 TFB3 Cdk activating ki 85.4 0.53 1.2E-05 41.3 1.9 47 151-197 8-60 (314)
99 PF03854 zf-P11: P-11 zinc fin 84.0 0.35 7.6E-06 32.1 0.2 44 154-202 3-47 (50)
100 KOG1609 Protein involved in mR 81.6 1.1 2.5E-05 38.9 2.5 48 153-200 78-133 (323)
101 COG5183 SSM4 Protein involved 81.5 1.1 2.4E-05 45.3 2.6 50 150-200 9-65 (1175)
102 KOG1815 Predicted E3 ubiquitin 77.3 1.4 3E-05 41.3 1.8 38 150-189 67-104 (444)
103 KOG1812 Predicted E3 ubiquitin 77.2 1.2 2.7E-05 41.1 1.4 43 153-195 306-350 (384)
104 PF02891 zf-MIZ: MIZ/SP-RING z 77.1 2.8 6.1E-05 27.6 2.7 43 154-199 3-50 (50)
105 KOG0309 Conserved WD40 repeat- 75.8 1.8 3.9E-05 43.5 2.1 26 170-195 1044-1069(1081)
106 KOG3899 Uncharacterized conser 73.9 1.8 4E-05 39.0 1.5 27 174-200 325-364 (381)
107 KOG4718 Non-SMC (structural ma 70.7 2.1 4.5E-05 36.9 1.1 47 149-197 177-223 (235)
108 KOG3005 GIY-YIG type nuclease 70.4 2.6 5.6E-05 37.4 1.6 48 152-199 181-241 (276)
109 COG5109 Uncharacterized conser 68.2 4.6 9.9E-05 36.9 2.8 49 150-198 333-384 (396)
110 KOG0802 E3 ubiquitin ligase [P 65.7 4.2 9.2E-05 39.1 2.2 44 150-200 476-519 (543)
111 KOG2068 MOT2 transcription fac 65.3 4.5 9.7E-05 36.8 2.1 49 153-201 249-298 (327)
112 PF13901 DUF4206: Domain of un 64.1 4.6 0.0001 34.0 1.9 40 152-197 151-196 (202)
113 KOG3161 Predicted E3 ubiquitin 62.3 3 6.5E-05 41.3 0.5 41 152-194 10-51 (861)
114 KOG3579 Predicted E3 ubiquitin 62.3 5.2 0.00011 36.0 1.9 37 151-190 266-306 (352)
115 PF01363 FYVE: FYVE zinc finge 60.3 4.6 0.0001 27.6 1.1 37 150-186 6-43 (69)
116 KOG0269 WD40 repeat-containing 59.9 8.3 0.00018 38.8 3.0 42 153-195 779-820 (839)
117 KOG2066 Vacuolar assembly/sort 55.5 5.2 0.00011 40.3 0.9 44 152-196 783-830 (846)
118 KOG3039 Uncharacterized conser 55.3 10 0.00022 33.6 2.5 33 152-187 42-74 (303)
119 KOG1829 Uncharacterized conser 55.1 4.6 0.0001 39.5 0.4 43 151-196 509-556 (580)
120 PF06906 DUF1272: Protein of u 53.7 22 0.00048 24.3 3.4 45 154-201 6-52 (57)
121 COG4847 Uncharacterized protei 51.2 18 0.00038 27.4 2.9 36 153-189 6-41 (103)
122 smart00064 FYVE Protein presen 47.4 16 0.00034 24.7 2.1 37 151-187 8-45 (68)
123 smart00249 PHD PHD zinc finger 46.4 11 0.00025 22.6 1.1 31 155-186 1-32 (47)
124 PF07975 C1_4: TFIIH C1-like d 45.8 16 0.00034 24.4 1.7 42 156-197 2-50 (51)
125 KOG2113 Predicted RNA binding 44.6 18 0.00038 33.2 2.4 43 153-200 343-386 (394)
126 smart00132 LIM Zinc-binding do 42.4 27 0.00058 20.1 2.3 37 156-201 2-38 (39)
127 cd00065 FYVE FYVE domain; Zinc 40.8 19 0.00041 23.3 1.6 35 153-187 2-37 (57)
128 PF00628 PHD: PHD-finger; Int 40.3 12 0.00025 23.9 0.5 43 155-197 1-49 (51)
129 KOG2807 RNA polymerase II tran 38.9 31 0.00068 31.7 3.1 47 153-199 330-376 (378)
130 PF07191 zinc-ribbons_6: zinc- 38.3 2.6 5.7E-05 30.0 -3.1 40 154-201 2-41 (70)
131 COG3813 Uncharacterized protei 37.8 34 0.00073 24.8 2.5 44 155-201 7-52 (84)
132 PLN02189 cellulose synthase 37.5 28 0.0006 36.4 2.8 48 152-200 33-86 (1040)
133 KOG0824 Predicted E3 ubiquitin 36.0 13 0.00028 33.7 0.2 48 151-200 103-150 (324)
134 PF04216 FdhE: Protein involve 35.0 6.7 0.00014 34.6 -1.8 45 151-198 170-219 (290)
135 PLN02436 cellulose synthase A 34.3 35 0.00077 35.8 3.0 48 152-200 35-88 (1094)
136 TIGR00622 ssl1 transcription f 33.9 40 0.00086 26.1 2.6 44 154-197 56-110 (112)
137 KOG3842 Adaptor protein Pellin 33.9 39 0.00084 31.1 2.9 49 152-200 340-413 (429)
138 KOG3113 Uncharacterized conser 33.0 44 0.00095 29.7 3.0 48 151-200 109-157 (293)
139 PF04423 Rad50_zn_hook: Rad50 32.3 13 0.00029 24.4 -0.3 9 192-200 22-30 (54)
140 KOG4185 Predicted E3 ubiquitin 32.0 8.8 0.00019 33.5 -1.5 48 152-199 206-265 (296)
141 PF06750 DiS_P_DiS: Bacterial 31.6 47 0.001 24.5 2.6 38 153-202 33-70 (92)
142 PF09943 DUF2175: Uncharacteri 31.0 44 0.00095 25.5 2.3 33 154-187 3-35 (101)
143 PF06844 DUF1244: Protein of u 30.6 30 0.00066 24.4 1.3 12 177-188 11-22 (68)
144 KOG1729 FYVE finger containing 30.5 9.9 0.00021 34.0 -1.5 38 153-190 214-251 (288)
145 PF07800 DUF1644: Protein of u 30.2 24 0.00052 29.0 0.9 13 191-203 81-93 (162)
146 PF14569 zf-UDP: Zinc-binding 29.9 40 0.00088 24.6 1.9 49 152-200 8-61 (80)
147 PF10497 zf-4CXXC_R1: Zinc-fin 29.3 60 0.0013 24.6 2.9 24 175-198 37-69 (105)
148 PF13240 zinc_ribbon_2: zinc-r 28.4 8.3 0.00018 21.4 -1.5 9 191-199 14-22 (23)
149 PLN02638 cellulose synthase A 28.4 52 0.0011 34.7 3.0 47 152-199 16-68 (1079)
150 PF10146 zf-C4H2: Zinc finger- 28.1 39 0.00084 29.2 1.8 22 178-199 196-217 (230)
151 PF06937 EURL: EURL protein; 27.6 63 0.0014 28.9 3.0 47 149-195 26-75 (285)
152 PF09998 DUF2239: Uncharacteri 27.5 21 0.00045 30.1 0.0 20 37-56 142-161 (187)
153 KOG1815 Predicted E3 ubiquitin 27.3 17 0.00037 34.0 -0.5 39 151-189 224-267 (444)
154 PF05605 zf-Di19: Drought indu 26.9 8.3 0.00018 25.3 -2.0 14 153-166 2-15 (54)
155 PF00412 LIM: LIM domain; Int 26.9 45 0.00098 21.3 1.6 31 152-184 25-55 (58)
156 PF14311 DUF4379: Domain of un 26.8 40 0.00086 22.1 1.3 9 188-196 47-55 (55)
157 smart00647 IBR In Between Ring 25.5 20 0.00043 23.5 -0.4 19 168-186 39-58 (64)
158 PF10235 Cript: Microtubule-as 25.4 93 0.002 23.2 3.2 37 152-200 43-79 (90)
159 PF13832 zf-HC5HC2H_2: PHD-zin 25.3 39 0.00084 25.0 1.2 29 152-185 54-87 (110)
160 KOG1245 Chromatin remodeling c 24.6 25 0.00054 38.0 0.0 51 149-199 1104-1158(1404)
161 PLN02400 cellulose synthase 24.6 49 0.0011 34.8 2.1 47 152-199 35-87 (1085)
162 PF02318 FYVE_2: FYVE-type zin 23.6 44 0.00095 25.5 1.2 34 152-185 53-88 (118)
163 PF13771 zf-HC5HC2H: PHD-like 23.3 40 0.00087 23.9 0.9 34 152-185 35-68 (90)
164 PF14353 CpXC: CpXC protein 22.3 87 0.0019 23.9 2.7 44 154-200 2-48 (128)
165 PRK03564 formate dehydrogenase 21.9 48 0.001 30.0 1.3 45 152-198 186-234 (309)
166 PF13719 zinc_ribbon_5: zinc-r 21.4 53 0.0011 20.0 1.0 13 155-167 4-16 (37)
167 PF07649 C1_3: C1-like domain; 21.0 64 0.0014 18.5 1.3 29 155-183 2-30 (30)
168 KOG4218 Nuclear hormone recept 21.0 30 0.00065 32.1 -0.2 50 148-198 10-75 (475)
169 PLN02915 cellulose synthase A 20.9 83 0.0018 33.1 2.9 48 152-200 14-67 (1044)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.50 E-value=7.6e-15 Score=94.70 Aligned_cols=44 Identities=43% Similarity=1.183 Sum_probs=40.4
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcC
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCR 197 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR 197 (203)
++|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9e-14 Score=125.13 Aligned_cols=48 Identities=40% Similarity=1.090 Sum_probs=44.6
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcCcCcc
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP-QCPYCRRPAL 201 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v~ 201 (203)
..|+||+|+|..+++++.|||.|.||..||++|+..+. .||+|+.++.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 69999999999999999999999999999999997775 5999998775
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.25 E-value=5e-12 Score=90.39 Aligned_cols=46 Identities=33% Similarity=0.951 Sum_probs=36.9
Q ss_pred ccccccccccccccC----------CceEEecCCCcccHHhHHHHHhcCCCCCCcC
Q 028791 152 NTKICSVCLEEFQEE----------QPVTRLPCSHKYHSDCVLPWLAAHPQCPYCR 197 (203)
Q Consensus 152 ~~~~C~ICle~~~~~----------~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR 197 (203)
.++.|+||++.|..+ ..+...+|+|.||..||.+|++.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 455699999999432 2445567999999999999999999999997
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=9.3e-12 Score=109.88 Aligned_cols=52 Identities=31% Similarity=0.840 Sum_probs=48.0
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcCcCccC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA-AHPQCPYCRRPALV 202 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~ 202 (203)
....+|+||++.|...+.+++|||.|.||..|+..|+. .+..||+||.+|++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 44589999999999999999999999999999999997 67789999999986
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.15 E-value=2.8e-11 Score=104.47 Aligned_cols=51 Identities=27% Similarity=0.742 Sum_probs=42.5
Q ss_pred CccccccccccccccCCc-----eEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQP-----VTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~-----~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
..+.+|+||++.+..++. .+.++|+|.||..||.+|+..+.+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 457899999999876531 244569999999999999999999999998764
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.4e-11 Score=105.46 Aligned_cols=53 Identities=30% Similarity=0.765 Sum_probs=45.8
Q ss_pred cCCCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 147 RGSKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 147 ~~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
.........|.+|||....+ ..+||||.||+.||.+|...+..||+||..+.+
T Consensus 233 ~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred ccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 33445678999999988887 789999999999999999999999999987643
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.05 E-value=1.5e-10 Score=96.78 Aligned_cols=48 Identities=25% Similarity=0.732 Sum_probs=40.9
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc----------------CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA----------------HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~----------------~~~CP~CR~~v~ 201 (203)
.+..+|+||++.+..+ ++++|||.||+.||..|+.. ...||+||.+|.
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3578999999999887 77899999999999999842 347999999874
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.02 E-value=1.8e-10 Score=76.18 Aligned_cols=46 Identities=33% Similarity=0.862 Sum_probs=39.5
Q ss_pred cccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+..|.||++.... ++.+||||. ||..|+..|+.....||+||.+|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5789999997655 488999999 999999999999999999999874
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.8e-10 Score=97.11 Aligned_cols=50 Identities=22% Similarity=0.644 Sum_probs=41.8
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcC---CCCCCcCcCcc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH---PQCPYCRRPAL 201 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~---~~CP~CR~~v~ 201 (203)
.....++|.||||.-+++ +++.|||.|||.||.+|+... ..||+|+..|.
T Consensus 43 ~~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 346789999999987777 777899999999999999543 46899998764
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.98 E-value=5.4e-10 Score=69.92 Aligned_cols=44 Identities=45% Similarity=1.136 Sum_probs=36.3
Q ss_pred cccccccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcCcCc
Q 028791 155 ICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-HPQCPYCRRPA 200 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v 200 (203)
+|+||++.+... +...+|+|.||..|+..|+.. +..||+|+..+
T Consensus 1 ~C~iC~~~~~~~--~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREP--VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCc--eEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998433 445559999999999999987 77899999764
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.98 E-value=3.5e-10 Score=71.18 Aligned_cols=39 Identities=36% Similarity=1.140 Sum_probs=33.5
Q ss_pred ccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCc
Q 028791 156 CSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYC 196 (203)
Q Consensus 156 C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~C 196 (203)
|+||++.+.++ ++.++|||.||..|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998774 5678999999999999999888899998
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.97 E-value=3.5e-10 Score=72.73 Aligned_cols=38 Identities=32% Similarity=0.926 Sum_probs=30.3
Q ss_pred ccccccccccCCceEEecCCCcccHHhHHHHHhcC----CCCCCc
Q 028791 156 CSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH----PQCPYC 196 (203)
Q Consensus 156 C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~----~~CP~C 196 (203)
|+||++.|.++ +.|+|||+||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 999999999999999999543 369987
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.4e-10 Score=100.66 Aligned_cols=52 Identities=35% Similarity=1.027 Sum_probs=43.7
Q ss_pred CCcccccccccccc-ccCC---------ceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEF-QEEQ---------PVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~-~~~~---------~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+++..|.||+|++ ..+. +...|||||.||.+|++.|++...+||+||.+|.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 46788999999994 4331 3367999999999999999999999999999864
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.80 E-value=5.4e-09 Score=71.27 Aligned_cols=44 Identities=25% Similarity=0.582 Sum_probs=40.7
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
..|+||.+.+..+ +.++|||.|+..||..|+..+..||+|+.++
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 5799999999988 7889999999999999998888999999876
No 15
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.79 E-value=3.7e-09 Score=66.67 Aligned_cols=39 Identities=44% Similarity=1.215 Sum_probs=34.0
Q ss_pred ccccccccccCCceEEecCCCcccHHhHHHHHh--cCCCCCCc
Q 028791 156 CSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA--AHPQCPYC 196 (203)
Q Consensus 156 C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~--~~~~CP~C 196 (203)
|+||++.+..+ ...++|+|.||..|+..|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998887 24889999999999999997 55579998
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.75 E-value=6.9e-09 Score=76.35 Aligned_cols=54 Identities=35% Similarity=0.853 Sum_probs=41.6
Q ss_pred CCCCccccccccccccccCC----------ceEEecCCCcccHHhHHHHHhc---CCCCCCcCcCcc
Q 028791 148 GSKSNTKICSVCLEEFQEEQ----------PVTRLPCSHKYHSDCVLPWLAA---HPQCPYCRRPAL 201 (203)
Q Consensus 148 ~~~~~~~~C~ICle~~~~~~----------~~~~LpC~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~ 201 (203)
.+..+++.|.||...|...- .++.-.|+|.||..||..|+.. +..||+||.+..
T Consensus 16 Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 16 WDVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred EecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34456889999999987321 3344459999999999999964 568999998754
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.74 E-value=9.8e-09 Score=61.94 Aligned_cols=38 Identities=39% Similarity=1.175 Sum_probs=32.5
Q ss_pred ccccccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCc
Q 028791 156 CSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA-AHPQCPYC 196 (203)
Q Consensus 156 C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~-~~~~CP~C 196 (203)
|+||++.... .+.++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD---PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC---cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998444 48899999999999999997 66679987
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.72 E-value=9.9e-09 Score=66.25 Aligned_cols=44 Identities=27% Similarity=0.792 Sum_probs=37.8
Q ss_pred cccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCc
Q 028791 155 ICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRR 198 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 198 (203)
.|+||++.|........++|||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 48999999955556788899999999999999866678999984
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.72 E-value=5.7e-09 Score=89.00 Aligned_cols=53 Identities=25% Similarity=0.542 Sum_probs=39.3
Q ss_pred CCCccccccccccccccCC------ceEEecCCCcccHHhHHHHHhcC------CCCCCcCcCcc
Q 028791 149 SKSNTKICSVCLEEFQEEQ------PVTRLPCSHKYHSDCVLPWLAAH------PQCPYCRRPAL 201 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~------~~~~LpC~H~Fh~~CI~~Wl~~~------~~CP~CR~~v~ 201 (203)
..+.+.+|+||+|....+. .....+|+|.||..||..|...+ ..||+||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3456789999999864321 12445699999999999999653 35999998653
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.4e-09 Score=85.46 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=42.0
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+....|+|||+.+.+... +.+.|||.||..||...++....||+|++.|.
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 456899999999887632 33679999999999999999999999997653
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=9.6e-09 Score=94.53 Aligned_cols=49 Identities=29% Similarity=0.684 Sum_probs=43.7
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
......|+||++.|..+ +.++|+|.||..||..|+.....||+|+..+.
T Consensus 23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 45678999999999888 67899999999999999988889999998764
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.7e-08 Score=96.24 Aligned_cols=50 Identities=34% Similarity=0.946 Sum_probs=44.0
Q ss_pred CccccccccccccccCCc--eEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQP--VTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~--~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
..+..|.||+|.+..+.+ ...+||+|.||..|+..|++..++||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 457899999999988544 47899999999999999999999999999843
No 23
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.55 E-value=2.3e-08 Score=89.84 Aligned_cols=47 Identities=34% Similarity=0.778 Sum_probs=43.7
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
+....|.||.|.|..+ +.+||+|.||..||...+..++.||.|+.++
T Consensus 21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 4567999999999999 8899999999999999999999999998865
No 24
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.9e-08 Score=73.26 Aligned_cols=69 Identities=20% Similarity=0.442 Sum_probs=50.5
Q ss_pred cccccccccccccccCCCCcccccccccccccc-------------CC-ceEEecCCCcccHHhHHHHHhcCCCCCCcCc
Q 028791 133 SKLLWGSHLRHLKLRGSKSNTKICSVCLEEFQE-------------EQ-PVTRLPCSHKYHSDCVLPWLAAHPQCPYCRR 198 (203)
Q Consensus 133 ~k~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~-------------~~-~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 198 (203)
.+++..++...+.+..-+...+.|+||..-+-. .+ .+..-.|.|.||..||..|++.++.||+|..
T Consensus 26 ~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~ 105 (114)
T KOG2930|consen 26 KKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNK 105 (114)
T ss_pred CcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCc
Confidence 445555555666676777788999999865421 12 2333459999999999999999999999987
Q ss_pred Ccc
Q 028791 199 PAL 201 (203)
Q Consensus 199 ~v~ 201 (203)
+-+
T Consensus 106 eW~ 108 (114)
T KOG2930|consen 106 EWV 108 (114)
T ss_pred cee
Confidence 643
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.1e-08 Score=85.38 Aligned_cols=49 Identities=31% Similarity=0.708 Sum_probs=42.2
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHH-HHhcCCC-CCCcCcCccC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLP-WLAAHPQ-CPYCRRPALV 202 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~-Wl~~~~~-CP~CR~~v~~ 202 (203)
..+..|.||++....+ ..++|||.||+.||.. |-..+.. ||+||+.+.+
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 4578999999987777 8899999999999999 9877765 9999987653
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.1e-08 Score=84.73 Aligned_cols=50 Identities=26% Similarity=0.787 Sum_probs=43.0
Q ss_pred ccccccccccccccCC-------ceEEecCCCcccHHhHHHHH--hcCCCCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQEEQ-------PVTRLPCSHKYHSDCVLPWL--AAHPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~-------~~~~LpC~H~Fh~~CI~~Wl--~~~~~CP~CR~~v~ 201 (203)
++..|+||-..+...+ ++..|.|+|.||..||..|- ..+++||+|+..|+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 5779999998877664 67789999999999999996 67889999998765
No 27
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.36 E-value=2.9e-07 Score=66.89 Aligned_cols=51 Identities=25% Similarity=0.724 Sum_probs=39.2
Q ss_pred CccccccccccccccC------------C-ceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEE------------Q-PVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~------------~-~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
...+.|+||...|... + .++.-.|.|.||..||..|+..++.||++|++..
T Consensus 18 i~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 18 IPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 3457899988766432 2 2333449999999999999999999999998754
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.36 E-value=2.3e-07 Score=60.08 Aligned_cols=38 Identities=37% Similarity=0.904 Sum_probs=22.2
Q ss_pred ccccccccccC-CceEEecCCCcccHHhHHHHHhcC----CCCC
Q 028791 156 CSVCLEEFQEE-QPVTRLPCSHKYHSDCVLPWLAAH----PQCP 194 (203)
Q Consensus 156 C~ICle~~~~~-~~~~~LpC~H~Fh~~CI~~Wl~~~----~~CP 194 (203)
|+||.| |... +..+.|+|||+||.+|+..+++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7663 334889999999999999999743 3576
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.1e-07 Score=87.17 Aligned_cols=47 Identities=28% Similarity=0.684 Sum_probs=38.7
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcC-----CCCCCcCcCccC
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH-----PQCPYCRRPALV 202 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~-----~~CP~CR~~v~~ 202 (203)
+..|+|||+....+ ..+.|||.||..||.+++... ..||+|+..|-+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999987777 556699999999999987443 479999987643
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.33 E-value=2.6e-07 Score=81.73 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=42.5
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRP 199 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~ 199 (203)
+....|-||-+.|..+ ..++|||.||+.||...+..++.||+||++
T Consensus 23 Ds~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred hhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCcccccc
Confidence 3467899999999999 788999999999999999999999999986
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.2e-07 Score=77.43 Aligned_cols=45 Identities=33% Similarity=0.809 Sum_probs=40.5
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcC
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCR 197 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR 197 (203)
..+...|+||++.|..+ ..+||+|.||..|+..++.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 35678999999999999 8899999999999999888556899998
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.28 E-value=5.6e-07 Score=64.05 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=38.4
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-HPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~ 201 (203)
+.+.|+|+.+.+.++ +.+|+||+|...||..|+.. +..||+|+.++.
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 467899999999999 89999999999999999988 889999988764
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6.5e-07 Score=83.77 Aligned_cols=53 Identities=28% Similarity=0.728 Sum_probs=41.8
Q ss_pred CCccccccccccccccCC--------------ceEEecCCCcccHHhHHHHHh-cCCCCCCcCcCccC
Q 028791 150 KSNTKICSVCLEEFQEEQ--------------PVTRLPCSHKYHSDCVLPWLA-AHPQCPYCRRPALV 202 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~--------------~~~~LpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~ 202 (203)
.....+|+||+..+..-. .-+.+||.|.||..|+..|+. .+-.||+||.++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345679999998765321 123569999999999999998 55599999999986
No 34
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.6e-06 Score=78.31 Aligned_cols=48 Identities=33% Similarity=0.727 Sum_probs=42.0
Q ss_pred CccccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
+...+|.||+.+..+. .+|||.|. .|..|.+...-..+.||+||.+|.
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 4478999999976665 89999997 899999999888889999999875
No 35
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.10 E-value=3.1e-06 Score=56.09 Aligned_cols=42 Identities=26% Similarity=0.792 Sum_probs=32.4
Q ss_pred cccccccccccCCceEEecCC-----CcccHHhHHHHHhc--CCCCCCcC
Q 028791 155 ICSVCLEEFQEEQPVTRLPCS-----HKYHSDCVLPWLAA--HPQCPYCR 197 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~-----H~Fh~~CI~~Wl~~--~~~CP~CR 197 (203)
.|.||++ ...++.....||. |.||..|+..|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3344455678985 78999999999954 44899995
No 36
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.4e-06 Score=62.80 Aligned_cols=50 Identities=32% Similarity=0.798 Sum_probs=36.4
Q ss_pred ccccccccccccccCCc---------eEEe-cCCCcccHHhHHHHHhc---CCCCCCcCcCcc
Q 028791 152 NTKICSVCLEEFQEEQP---------VTRL-PCSHKYHSDCVLPWLAA---HPQCPYCRRPAL 201 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~---------~~~L-pC~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~ 201 (203)
.+.+|.||.-.|...-. ..++ -|.|.||..||..|+.. ...||+||....
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 44599999988864321 1122 28999999999999943 457999998753
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.00 E-value=9.5e-07 Score=62.68 Aligned_cols=49 Identities=24% Similarity=0.742 Sum_probs=22.9
Q ss_pred cccccccccccccCCce--EEe---cCCCcccHHhHHHHHhc----C-------CCCCCcCcCcc
Q 028791 153 TKICSVCLEEFQEEQPV--TRL---PCSHKYHSDCVLPWLAA----H-------PQCPYCRRPAL 201 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~--~~L---pC~H~Fh~~CI~~Wl~~----~-------~~CP~CR~~v~ 201 (203)
+.+|.||++.+...+.+ .+- .|+..||..|+.+|+.. + +.||+|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46899999986633211 222 38999999999999842 1 25999998874
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.99 E-value=2.1e-06 Score=85.40 Aligned_cols=50 Identities=32% Similarity=0.868 Sum_probs=39.3
Q ss_pred CCccccccccccccccCCceEEec------CCCcccHHhHHHHHh--cCCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLP------CSHKYHSDCVLPWLA--AHPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~Lp------C~H~Fh~~CI~~Wl~--~~~~CP~CR~~v~ 201 (203)
.++..+|+||+..+..-+ +.+| |.|.||..|+-.|+. .+++||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456789999999877321 2333 999999999999995 4568999998875
No 39
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.3e-06 Score=58.16 Aligned_cols=45 Identities=29% Similarity=0.659 Sum_probs=36.3
Q ss_pred cccccccccccccCCceEEecCCCc-ccHHhHHHHHh-cCCCCCCcCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLA-AHPQCPYCRRPA 200 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~-~~~~CP~CR~~v 200 (203)
+++|.||+|.-.+. +...|||. .|+.|-.+.++ .+..||+||++|
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 47999999964443 45569997 89999888665 788999999986
No 40
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.8e-06 Score=77.94 Aligned_cols=48 Identities=27% Similarity=0.743 Sum_probs=40.4
Q ss_pred CccccccccccccccCCceEEec-CCCcccHHhHHHHH-hcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWL-AAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~ 201 (203)
..+..|+|||+.+... +..+ |.|.||..||..-+ ..+..||.||+.+.
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 4578999999998876 5555 99999999998877 56779999998765
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.81 E-value=7.7e-06 Score=75.87 Aligned_cols=48 Identities=29% Similarity=0.884 Sum_probs=37.9
Q ss_pred CccccccccccccccCC-ceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQ-PVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~-~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
.+...|+||||.+...- .+..+.|.|.||..|+..|. ..+||+||...
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q 221 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQ 221 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhc
Confidence 46789999999887653 23445699999999999995 55699998743
No 42
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.5e-05 Score=73.72 Aligned_cols=48 Identities=25% Similarity=0.634 Sum_probs=44.2
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
..+++|.||+..+..+ +.+||||.||..||+.-+..+..||.||.+++
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 5689999999999998 88899999999999998888899999999875
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.63 E-value=7.9e-06 Score=57.18 Aligned_cols=45 Identities=31% Similarity=0.776 Sum_probs=23.4
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
....|.+|.+.+..+ +....|.|.||+.||..-+. ..||+|+.+.
T Consensus 6 ~lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred HhcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 356899999998888 33456999999999987544 3599998764
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=3.5e-05 Score=69.97 Aligned_cols=50 Identities=30% Similarity=0.817 Sum_probs=38.2
Q ss_pred CccccccccccccccCC-----ceEEecCCCcccHHhHHHHH--hc-----CCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQ-----PVTRLPCSHKYHSDCVLPWL--AA-----HPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~-----~~~~LpC~H~Fh~~CI~~Wl--~~-----~~~CP~CR~~v 200 (203)
..+.+|.||++.+.... -.+..+|.|.||..||..|- .. ...||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45789999999876653 11224499999999999998 33 46899999754
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.44 E-value=3.1e-05 Score=76.12 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=43.8
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
.....|++|+..+.+.......+|+|.||..||..|-....+||+||..+
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 34678999999998886666778999999999999999999999999764
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.39 E-value=6.1e-05 Score=67.07 Aligned_cols=54 Identities=26% Similarity=0.607 Sum_probs=44.4
Q ss_pred CCCCccccccccccccccCCceEEecCCCcccHHhHHHHHhc-----------------------CCCCCCcCcCcc
Q 028791 148 GSKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-----------------------HPQCPYCRRPAL 201 (203)
Q Consensus 148 ~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-----------------------~~~CP~CR~~v~ 201 (203)
+.......|.|||--|..++..++++|.|.||..|+..++.. ...||+||..|.
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 444567899999999999998999999999999999988621 126999998764
No 47
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00016 Score=62.33 Aligned_cols=53 Identities=23% Similarity=0.510 Sum_probs=43.1
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcC--------CCCCCcCcCccC
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH--------PQCPYCRRPALV 202 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~--------~~CP~CR~~v~~ 202 (203)
+.+....|..|-..+..++.+. |.|.|.||+.|+.+|...- ..||.|..+|++
T Consensus 46 DsDY~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred hcCCCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4456778999999999887654 7799999999999997432 279999988864
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=9.6e-05 Score=72.27 Aligned_cols=48 Identities=23% Similarity=0.582 Sum_probs=38.8
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA-HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~ 201 (203)
.+-..|++|-+.+... +.+.|+|.||..|+.+-+.. ...||.|...+.
T Consensus 641 K~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred HhceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3567999999776665 66679999999999998855 457999988764
No 49
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00034 Score=61.57 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHh--cCCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA--AHPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~--~~~~CP~CR~~v~ 201 (203)
...+.+|++|-+.-..| ....+|+|+||+.||..-.. ...+||.|..+++
T Consensus 236 ~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 35678999999986666 34456999999999998664 3478999988876
No 50
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.11 E-value=0.00013 Score=65.50 Aligned_cols=50 Identities=20% Similarity=0.518 Sum_probs=41.5
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
.......|.+|-..|.... .+.-|-|.||.+||...+..+..||.|...|
T Consensus 11 ~~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred hcccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 3456789999999998872 3334999999999999999999999997655
No 51
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.99 E-value=0.00024 Score=60.11 Aligned_cols=45 Identities=18% Similarity=0.586 Sum_probs=40.2
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcC
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRP 199 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~ 199 (203)
-.+.|.||-++|..+ ++..|||.||..|...-......|-+|-+.
T Consensus 195 IPF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 195 IPFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred Cceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 357899999999999 888899999999999988888999999654
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.98 E-value=0.00028 Score=65.08 Aligned_cols=46 Identities=28% Similarity=0.842 Sum_probs=36.5
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhc--CCCCCCcCcCcc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA--HPQCPYCRRPAL 201 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~--~~~CP~CR~~v~ 201 (203)
-.-|.||-|. ...+.+-||||..|..|+..|... ..+||+||..|-
T Consensus 369 FeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3569999985 223467799999999999999833 568999998764
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.98 E-value=0.00031 Score=64.83 Aligned_cols=49 Identities=24% Similarity=0.802 Sum_probs=42.5
Q ss_pred CCccccccccccccccCCceEE-ecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+++..|+||...+..+ .. ..|||.||..|+..|+..+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 35678999999999888 44 479999999999999999999999987653
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.84 E-value=0.00064 Score=46.44 Aligned_cols=43 Identities=21% Similarity=0.665 Sum_probs=29.1
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc--CCCCCC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA--HPQCPY 195 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~--~~~CP~ 195 (203)
.....|+|.+..|.++ +....|+|.|-...|.+|+.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4568999999999988 445579999999999999943 347998
No 55
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.59 E-value=0.00093 Score=63.68 Aligned_cols=51 Identities=18% Similarity=0.531 Sum_probs=40.4
Q ss_pred cCCCCccccccccccccccCCceEEecCCCcccHHhHHHHHh-----cCCCCCCcCcCc
Q 028791 147 RGSKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA-----AHPQCPYCRRPA 200 (203)
Q Consensus 147 ~~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~-----~~~~CP~CR~~v 200 (203)
.++..+..+|.+|-+.-... +...|.|.||..||.+++. .+-+||.|--.+
T Consensus 530 ~~enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CccccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 34556788999999976655 6778999999999999873 345899997655
No 56
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.00082 Score=59.73 Aligned_cols=45 Identities=20% Similarity=0.460 Sum_probs=40.5
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
.+.|-||-..|..+ ++..|+|.||..|...-+.....|++|...+
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence 56799999999999 8889999999999998888889999997654
No 57
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.46 E-value=0.002 Score=67.33 Aligned_cols=53 Identities=26% Similarity=0.671 Sum_probs=41.6
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcC----------CCCCCcCcCcc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH----------PQCPYCRRPAL 201 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~----------~~CP~CR~~v~ 201 (203)
..+.++.|.||+.+--..-..+.|.|+|+||..|....+++. -.||+|..+|.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 345688999999875555567889999999999998876543 16999998764
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.46 E-value=0.0011 Score=61.23 Aligned_cols=48 Identities=31% Similarity=0.765 Sum_probs=39.8
Q ss_pred CccccccccccccccC-CceEEecCCCcccHHhHHHHHhcCC--CCCCcCc
Q 028791 151 SNTKICSVCLEEFQEE-QPVTRLPCSHKYHSDCVLPWLAAHP--QCPYCRR 198 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~-~~~~~LpC~H~Fh~~CI~~Wl~~~~--~CP~CR~ 198 (203)
+.+..|..|-+.+... +.+..|||.|+||..|+.+.+.++. +||-||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3467899999987654 4567799999999999999997665 7999983
No 59
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.002 Score=58.78 Aligned_cols=50 Identities=22% Similarity=0.626 Sum_probs=41.8
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+.++..|+||+-.-... +..||+|.-|+.||.+-+-++..|=+|+..+.
T Consensus 418 p~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 346788999999753333 77899999999999999999999999988663
No 60
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.17 E-value=0.0033 Score=50.05 Aligned_cols=39 Identities=18% Similarity=0.503 Sum_probs=31.9
Q ss_pred cccccccccccccCCceEEecCC------CcccHHhHHHHHhcCC
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCS------HKYHSDCVLPWLAAHP 191 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~------H~Fh~~CI~~Wl~~~~ 191 (203)
..+|+||++.+...+.++.++|+ |.||..|+..|-..+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhcc
Confidence 67999999999886667888885 6699999999954433
No 61
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.91 E-value=0.0035 Score=46.39 Aligned_cols=33 Identities=27% Similarity=0.677 Sum_probs=27.7
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHH
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVL 184 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~ 184 (203)
++...|+||-..+.. ...++.||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 456789999999887 456778999999999974
No 62
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0025 Score=52.53 Aligned_cols=31 Identities=35% Similarity=0.875 Sum_probs=28.1
Q ss_pred CCccccccccccccccCCceEEecCCCcccH
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHS 180 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~ 180 (203)
.++..+|.||||++..++.+..|||-.+||.
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3567899999999999999999999999985
No 63
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.83 E-value=0.0069 Score=39.65 Aligned_cols=40 Identities=30% Similarity=0.846 Sum_probs=26.6
Q ss_pred ccccccccccCCceEEecCC--C---cccHHhHHHHHh--cCCCCCCc
Q 028791 156 CSVCLEEFQEEQPVTRLPCS--H---KYHSDCVLPWLA--AHPQCPYC 196 (203)
Q Consensus 156 C~ICle~~~~~~~~~~LpC~--H---~Fh~~CI~~Wl~--~~~~CP~C 196 (203)
|-||++.-...+ ....||. - ..|..|+..|+. .+..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998866654 3457753 3 689999999995 45579887
No 64
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0056 Score=55.75 Aligned_cols=46 Identities=35% Similarity=0.759 Sum_probs=34.1
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
......|.||++...+. ..+||||.-| |..-. +....||+||..|.
T Consensus 302 ~~~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccce---eeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 34567899999987665 8899999866 55332 44566999998653
No 65
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0066 Score=56.27 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=34.2
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHh
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA 188 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~ 188 (203)
......|.||+++.........+||+|.||..|+..+..
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 355789999999987777888999999999999999973
No 66
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.65 E-value=0.0066 Score=60.53 Aligned_cols=49 Identities=27% Similarity=0.739 Sum_probs=38.0
Q ss_pred CCccccccccccccccCCceEE-ecCCCcccHHhHHHHHhcC-------CCCCCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWLAAH-------PQCPYCRR 198 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl~~~-------~~CP~CR~ 198 (203)
.....+|.||++.+.....+.. -.|.|+||..||..|.... -.||.|..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4567899999999887765543 3499999999999998431 16999973
No 67
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.38 E-value=0.009 Score=53.59 Aligned_cols=42 Identities=26% Similarity=0.745 Sum_probs=35.4
Q ss_pred ccccccccccccCCceEEec-CCCcccHHhHHHHH-hcCCCCCCcCc
Q 028791 154 KICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWL-AAHPQCPYCRR 198 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl-~~~~~CP~CR~ 198 (203)
..|+.|-..+.++ +.+| |+|.||..||..-| .....||.|..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999998888 5566 89999999999755 67789999943
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.28 E-value=0.012 Score=38.91 Aligned_cols=45 Identities=29% Similarity=0.612 Sum_probs=22.8
Q ss_pred ccccccccccCCc-eEEecCCCcccHHhHHHHHh-cCCCCCCcCcCc
Q 028791 156 CSVCLEEFQEEQP-VTRLPCSHKYHSDCVLPWLA-AHPQCPYCRRPA 200 (203)
Q Consensus 156 C~ICle~~~~~~~-~~~LpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v 200 (203)
|++|.+++...+. ..--+|+..+|..|...-++ .++.||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999854432 22234899999999998886 578999999864
No 69
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.27 E-value=0.016 Score=47.47 Aligned_cols=47 Identities=23% Similarity=0.666 Sum_probs=34.4
Q ss_pred CCccccccccccccccCCceEEecCCC-----cccHHhHHHHHhc--CCCCCCcCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSH-----KYHSDCVLPWLAA--HPQCPYCRRPA 200 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H-----~Fh~~CI~~Wl~~--~~~CP~CR~~v 200 (203)
...+..|-||.++-.. ...||.. ..|.+|+..|+.. +..|++|+.+.
T Consensus 5 s~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 3567799999987432 2357544 4699999999954 45799998764
No 70
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.013 Score=49.09 Aligned_cols=52 Identities=25% Similarity=0.770 Sum_probs=33.9
Q ss_pred CccccccccccccccC----CceEEecCCCcccHHhHHHHHhc----C-------CCCCCcCcCccC
Q 028791 151 SNTKICSVCLEEFQEE----QPVTRLPCSHKYHSDCVLPWLAA----H-------PQCPYCRRPALV 202 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~----~-------~~CP~CR~~v~~ 202 (203)
++...|.||+..--.+ +..-...|+..||.-|+..|+.. . ..||+|-.+|.+
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3445566666532222 11223459999999999999842 1 269999998854
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.13 E-value=0.019 Score=52.51 Aligned_cols=49 Identities=24% Similarity=0.658 Sum_probs=39.3
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHH--HhcCCCCCCcCcCc
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPW--LAAHPQCPYCRRPA 200 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~W--l~~~~~CP~CR~~v 200 (203)
.+++...|.||-+.+.-. ..+||+|..|-.|.... |-....||+||...
T Consensus 57 tDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 57 TDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 345677899999976654 78999999999998775 45677899999753
No 72
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.12 E-value=0.025 Score=49.34 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=39.1
Q ss_pred CCccccccccccccccCCce-EEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPV-TRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~-~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
....+.|||....|...... +..||||+|...+|.+.- ....||+|-.++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f 160 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPF 160 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcc
Confidence 45688999999999554444 445799999999999983 456799998764
No 73
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.022 Score=51.51 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=38.0
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
.....|+||+....++. +...-|-+||+.||..++.+.+.||+=..++
T Consensus 298 ~~~~~CpvClk~r~Npt--vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPT--VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCc--eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 45678999999877772 2233699999999999999999999854443
No 74
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.0052 Score=54.81 Aligned_cols=41 Identities=24% Similarity=0.715 Sum_probs=31.5
Q ss_pred cccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
..-|+||++.-... +.|+|||. -|..|-.. -+.||+||.-|
T Consensus 300 ~~LC~ICmDaP~DC---vfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDC---VFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcce---EEeecCcEEeehhhccc----cccCchHHHHH
Confidence 56799999864444 88999996 68888644 34899999754
No 75
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.59 E-value=0.018 Score=39.15 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=32.9
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
...|..|...-..+ ..+||+|..|..|..-+ .-+-||+|-.++..
T Consensus 7 ~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKG---TVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccc---ccccccceeeccccChh--hccCCCCCCCcccC
Confidence 44666666643444 78999999999997664 45679999888753
No 76
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.50 E-value=0.033 Score=35.80 Aligned_cols=41 Identities=27% Similarity=0.759 Sum_probs=23.4
Q ss_pred ccccccccccCCceEEecCCCcccHHhHHHHHhcCC--CCCCc
Q 028791 156 CSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP--QCPYC 196 (203)
Q Consensus 156 C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~--~CP~C 196 (203)
|.+|-+....+..-....|+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888888872222223888999999999996655 79987
No 77
>PHA03096 p28-like protein; Provisional
Probab=94.50 E-value=0.021 Score=50.80 Aligned_cols=36 Identities=28% Similarity=0.691 Sum_probs=27.1
Q ss_pred ccccccccccccCC----ceEEec-CCCcccHHhHHHHHhc
Q 028791 154 KICSVCLEEFQEEQ----PVTRLP-CSHKYHSDCVLPWLAA 189 (203)
Q Consensus 154 ~~C~ICle~~~~~~----~~~~Lp-C~H~Fh~~CI~~Wl~~ 189 (203)
.+|.||++...... .-..|+ |.|.||..||..|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 78999999765431 122455 9999999999999843
No 78
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.46 E-value=0.023 Score=50.37 Aligned_cols=47 Identities=26% Similarity=0.539 Sum_probs=38.6
Q ss_pred ccccccccccccccCC-ceEEecCCCcccHHhHHHHHhcCCCCCCcCc
Q 028791 152 NTKICSVCLEEFQEEQ-PVTRLPCSHKYHSDCVLPWLAAHPQCPYCRR 198 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~-~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 198 (203)
....|+||.+.+.... .+..++|+|..|..|+.+....+.+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4556999999866554 3456889999999999999877799999977
No 79
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.039 Score=48.30 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=42.6
Q ss_pred ccccccccccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTRL-PCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
..+.|+||.+.+.+.-..+.| ||||+|+..|....+.....||+|-.++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~pl 269 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPL 269 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcC
Confidence 568999999999988766665 5999999999999999999999997654
No 80
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.94 E-value=0.035 Score=49.78 Aligned_cols=44 Identities=27% Similarity=0.603 Sum_probs=35.5
Q ss_pred CccccccccccccccCCceEEecC--CCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPC--SHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC--~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.+-.+|+||.+.+..+ ...| ||.-|..|-. +..+.||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 3568999999999888 3556 8999999975 35678999998875
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.46 E-value=0.04 Score=55.18 Aligned_cols=43 Identities=26% Similarity=0.687 Sum_probs=35.3
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcC
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRP 199 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~ 199 (203)
....|..|--.+..| .+..-|+|.||..|+. .....||-|+..
T Consensus 839 q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 456899999988887 4667799999999997 455689999864
No 82
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.43 E-value=0.049 Score=49.75 Aligned_cols=49 Identities=22% Similarity=0.526 Sum_probs=36.2
Q ss_pred CccccccccccccccCCceE-EecCCCcccHHhHHHHH-hcCCCCCCcCcC
Q 028791 151 SNTKICSVCLEEFQEEQPVT-RLPCSHKYHSDCVLPWL-AAHPQCPYCRRP 199 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~-~LpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~ 199 (203)
++++-|+.|+|.+...++-. -.|||...|.-|....- ..++.||-||..
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 44555999999988876553 35689888888866654 357789999874
No 83
>PHA02862 5L protein; Provisional
Probab=93.30 E-value=0.067 Score=43.28 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=30.3
Q ss_pred cccccccccccccCCce-EEecCCCcccHHhHHHHHhc--CCCCCCcCcCc
Q 028791 153 TKICSVCLEEFQEEQPV-TRLPCSHKYHSDCVLPWLAA--HPQCPYCRRPA 200 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~-~~LpC~H~Fh~~CI~~Wl~~--~~~CP~CR~~v 200 (203)
+..|-||.+.-...... .-..-....|..|+.+|++. +..||+|+.+.
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 45799999974332000 00000234899999999954 45799999864
No 84
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.24 E-value=0.035 Score=54.83 Aligned_cols=43 Identities=21% Similarity=0.661 Sum_probs=34.4
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHHhc--CCCCCCcCcCc
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA--HPQCPYCRRPA 200 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~--~~~CP~CR~~v 200 (203)
..|.||++ .+.....+|+|.||..|+...+.. ...||+||..+
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 89999999 333477889999999999998743 33699998754
No 85
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.40 E-value=0.096 Score=41.79 Aligned_cols=46 Identities=28% Similarity=0.603 Sum_probs=36.3
Q ss_pred ccccccccccccccCCceEEe-c---CCCcccHHhHHHHHh---cCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTRL-P---CSHKYHSDCVLPWLA---AHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L-p---C~H~Fh~~CI~~Wl~---~~~~CP~CR~~v 200 (203)
...+|.||.|...+. ..| | ||-..|..|-...++ ..+.||.|+...
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 578999999986665 333 3 999999999988764 467899998764
No 86
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.15 Score=47.13 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=41.0
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcC---CCCCCcCcC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH---PQCPYCRRP 199 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~---~~CP~CR~~ 199 (203)
...+.|||=-+.-...+..+.|.|||+....-+....++. ..||+|-..
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 4578999999888888888999999999999999987543 479999543
No 87
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.014 Score=53.92 Aligned_cols=51 Identities=29% Similarity=0.641 Sum_probs=43.6
Q ss_pred CccccccccccccccC-CceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEE-QPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~-~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.....|+||.+.+.+. +++-.+.|||.+|..|+..|+.....||.|+..|+
T Consensus 194 slv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 3467899999998876 55666789999999999999988889999998775
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.12 E-value=0.074 Score=55.40 Aligned_cols=45 Identities=27% Similarity=0.713 Sum_probs=38.9
Q ss_pred ccccccccccccc-cCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcC
Q 028791 152 NTKICSVCLEEFQ-EEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRP 199 (203)
Q Consensus 152 ~~~~C~ICle~~~-~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~ 199 (203)
....|.||++.+. .+ .+..|+|.||..|+..|+..+..||+|...
T Consensus 1152 ~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 4569999999988 44 566799999999999999999999999753
No 89
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=0.12 Score=46.79 Aligned_cols=44 Identities=20% Similarity=0.553 Sum_probs=29.8
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
...|.-|=-.+.. ..+.+||.|+||.+|... .....||.|-..|
T Consensus 90 VHfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 4456666543322 236789999999999754 3355899997654
No 90
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=0.18 Score=42.92 Aligned_cols=39 Identities=38% Similarity=0.752 Sum_probs=29.1
Q ss_pred ccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 156 CSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 156 C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
|-+|-+. +-.+..+||.|. +|..|-.. -..||+|+.+..
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888874 444788999995 88888643 456999987654
No 91
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.97 E-value=0.16 Score=50.80 Aligned_cols=52 Identities=15% Similarity=0.349 Sum_probs=37.7
Q ss_pred ccccccccccccccCC-ceEEec---CCCcccHHhHHHHHh------cCCCCCCcCcCccCC
Q 028791 152 NTKICSVCLEEFQEEQ-PVTRLP---CSHKYHSDCVLPWLA------AHPQCPYCRRPALVW 203 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~-~~~~Lp---C~H~Fh~~CI~~Wl~------~~~~CP~CR~~v~~~ 203 (203)
....|.||..++..+. ..-.+| |+|.||..||..|.. ....|++|...|..|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 4566777777776632 223455 999999999999973 244789999888776
No 92
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=88.48 E-value=0.57 Score=31.77 Aligned_cols=44 Identities=27% Similarity=0.641 Sum_probs=33.2
Q ss_pred ccccccccccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCC--cCcC
Q 028791 152 NTKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPWLAAHPQCPY--CRRP 199 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~~~CP~--CR~~ 199 (203)
....|.+|-+.|..++.+++-| |+-.+|..|... ...|-. |..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 4568999999998777777777 999999999744 455544 5443
No 93
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.26 E-value=0.25 Score=49.89 Aligned_cols=36 Identities=25% Similarity=0.687 Sum_probs=28.9
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
+.+..|.+|...+... .-++.||||.||+.|+..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 4578999999876554 45678899999999998864
No 94
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.70 E-value=0.14 Score=50.54 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=39.1
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhc---CCCCCCcCcCcc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA---HPQCPYCRRPAL 201 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~ 201 (203)
.-..+|+||++.+..+ ..+.|.|.|+..|+.-.+.. ...||+|+..+.
T Consensus 19 ~k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3467999999999988 77889999999999886633 347999987654
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.34 E-value=0.48 Score=43.56 Aligned_cols=28 Identities=29% Similarity=0.782 Sum_probs=21.5
Q ss_pred CCCcccHHhHHHHHhc-------------CCCCCCcCcCcc
Q 028791 174 CSHKYHSDCVLPWLAA-------------HPQCPYCRRPAL 201 (203)
Q Consensus 174 C~H~Fh~~CI~~Wl~~-------------~~~CP~CR~~v~ 201 (203)
|.-..|.+|+-.|+.. +..||+||+..-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 6667899999999833 237999998753
No 96
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.40 E-value=0.35 Score=42.66 Aligned_cols=52 Identities=19% Similarity=0.638 Sum_probs=34.6
Q ss_pred CCCccccccccccccccCC-ceEEecC-----CCcccHHhHHHHHhcCC--------CCCCcCcCc
Q 028791 149 SKSNTKICSVCLEEFQEEQ-PVTRLPC-----SHKYHSDCVLPWLAAHP--------QCPYCRRPA 200 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~-~~~~LpC-----~H~Fh~~CI~~Wl~~~~--------~CP~CR~~v 200 (203)
+.+.+.-|-||+..=++.. ..-+-|| .|..|..|+..|+..+. .||.|+...
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 3345677999997533321 1134676 46699999999993322 599998753
No 97
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=0.29 Score=45.25 Aligned_cols=37 Identities=27% Similarity=0.650 Sum_probs=27.4
Q ss_pred ccccccccccccccC-CceEEecCCCcccHHhHHHHHh
Q 028791 152 NTKICSVCLEEFQEE-QPVTRLPCSHKYHSDCVLPWLA 188 (203)
Q Consensus 152 ~~~~C~ICle~~~~~-~~~~~LpC~H~Fh~~CI~~Wl~ 188 (203)
...+|.||+.+.... +...+..|+|.||..|..+.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 467899999444443 3333466999999999999885
No 98
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.40 E-value=0.53 Score=41.28 Aligned_cols=47 Identities=28% Similarity=0.649 Sum_probs=34.4
Q ss_pred Cccccccccccc-cccCCce-EEec-CCCcccHHhHHHHHhcCC-CCC--CcC
Q 028791 151 SNTKICSVCLEE-FQEEQPV-TRLP-CSHKYHSDCVLPWLAAHP-QCP--YCR 197 (203)
Q Consensus 151 ~~~~~C~ICle~-~~~~~~~-~~Lp-C~H~Fh~~CI~~Wl~~~~-~CP--~CR 197 (203)
..+..|+||..+ |-.|+.. .+-| |-|..|.+|.+..+...+ .|| -|.
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 346689999976 4455533 3345 999999999999986655 799 464
No 99
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.03 E-value=0.35 Score=32.06 Aligned_cols=44 Identities=23% Similarity=0.590 Sum_probs=25.6
Q ss_pred ccccccccccccCCceEEecC-CCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 154 KICSVCLEEFQEEQPVTRLPC-SHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC-~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
..|.-|+-. .. ..+.| .|..|..|+.-.+.....||+|..+++.
T Consensus 3 ~nCKsCWf~--~k---~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWFA--NK---GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S----S---SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ccChhhhhc--CC---CeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 356677743 22 23456 6999999999999999999999998874
No 100
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.60 E-value=1.1 Score=38.89 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=34.9
Q ss_pred cccccccccccccCCc-eEEecCC-----CcccHHhHHHHHh--cCCCCCCcCcCc
Q 028791 153 TKICSVCLEEFQEEQP-VTRLPCS-----HKYHSDCVLPWLA--AHPQCPYCRRPA 200 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~-~~~LpC~-----H~Fh~~CI~~Wl~--~~~~CP~CR~~v 200 (203)
+..|-||.++....+. ....||. ...|..|+..|+. .+..|.+|....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 5789999997654322 3556764 3479999999996 566899997643
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.49 E-value=1.1 Score=45.26 Aligned_cols=50 Identities=22% Similarity=0.743 Sum_probs=36.2
Q ss_pred CCccccccccccccccCCceEEecCCCc-----ccHHhHHHHHhc--CCCCCCcCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHK-----YHSDCVLPWLAA--HPQCPYCRRPA 200 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~-----Fh~~CI~~Wl~~--~~~CP~CR~~v 200 (203)
.++...|-||..+=..++.+. -||... .|.+|+.+|+.- ...|-+|..++
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 345578999998755554443 567543 899999999954 44799998765
No 102
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.32 E-value=1.4 Score=41.34 Aligned_cols=38 Identities=24% Similarity=0.674 Sum_probs=31.0
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA 189 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~ 189 (203)
......|.||.+.+.. .+..+.|+|.||..|+..++..
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 3457899999998765 3466789999999999998844
No 103
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.18 E-value=1.2 Score=41.15 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=30.3
Q ss_pred cccccccccccccCC--ceEEecCCCcccHHhHHHHHhcCCCCCC
Q 028791 153 TKICSVCLEEFQEEQ--PVTRLPCSHKYHSDCVLPWLAAHPQCPY 195 (203)
Q Consensus 153 ~~~C~ICle~~~~~~--~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~ 195 (203)
-..|++|.-.+...+ ..++-.|+|.||+.|...|...+..|.-
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~ 350 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYE 350 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccC
Confidence 457888876554433 2334449999999999999877776644
No 104
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=77.11 E-value=2.8 Score=27.56 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=20.3
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHHh---cC--CCCCCcCcC
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA---AH--PQCPYCRRP 199 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~---~~--~~CP~CR~~ 199 (203)
..|+|....+..+ +....|.|.-|.+- ..|+. .. -.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 5789999888776 45556999855442 33442 22 269999764
No 105
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=75.77 E-value=1.8 Score=43.51 Aligned_cols=26 Identities=27% Similarity=0.727 Sum_probs=22.9
Q ss_pred EEecCCCcccHHhHHHHHhcCCCCCC
Q 028791 170 TRLPCSHKYHSDCVLPWLAAHPQCPY 195 (203)
Q Consensus 170 ~~LpC~H~Fh~~CI~~Wl~~~~~CP~ 195 (203)
+...|+|..|.+|..+|+.....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 34569999999999999999889986
No 106
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.90 E-value=1.8 Score=38.96 Aligned_cols=27 Identities=26% Similarity=0.725 Sum_probs=21.3
Q ss_pred CCCcccHHhHHHHHh-------------cCCCCCCcCcCc
Q 028791 174 CSHKYHSDCVLPWLA-------------AHPQCPYCRRPA 200 (203)
Q Consensus 174 C~H~Fh~~CI~~Wl~-------------~~~~CP~CR~~v 200 (203)
|....|.+|+.+|+. .+.+||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667789999999973 344899999865
No 107
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=70.69 E-value=2.1 Score=36.86 Aligned_cols=47 Identities=26% Similarity=0.611 Sum_probs=37.4
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcC
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCR 197 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR 197 (203)
..+....|.+|-....++ +.--.|+-.+|..|+..++...+.||-|.
T Consensus 177 y~dnlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 177 YADNLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred hHHHHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 345678999999987776 12234778899999999999999999994
No 108
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=70.42 E-value=2.6 Score=37.38 Aligned_cols=48 Identities=25% Similarity=0.503 Sum_probs=33.5
Q ss_pred ccccccccccccccCCce-EEec---CCCcccHHhHHHHHhc---------CCCCCCcCcC
Q 028791 152 NTKICSVCLEEFQEEQPV-TRLP---CSHKYHSDCVLPWLAA---------HPQCPYCRRP 199 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~-~~Lp---C~H~Fh~~CI~~Wl~~---------~~~CP~CR~~ 199 (203)
...+|-+|.+++.+.+.. ..-+ |.-.+|..|+...+.. ...||.|+..
T Consensus 181 ~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 181 LNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred cchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 346999999999544333 2222 8888999999995421 2479999874
No 109
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=68.23 E-value=4.6 Score=36.86 Aligned_cols=49 Identities=27% Similarity=0.489 Sum_probs=38.4
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhc---CCCCCCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA---HPQCPYCRR 198 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~---~~~CP~CR~ 198 (203)
....+.||+=-+.-...+..+.+.|||+.-..-+....++ ...||+|-.
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3457899998887777777788999999999988887643 346999953
No 110
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.73 E-value=4.2 Score=39.10 Aligned_cols=44 Identities=30% Similarity=0.863 Sum_probs=36.0
Q ss_pred CCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
.....+|.||+++. . ....+|. |..|+..|+.....||+|...+
T Consensus 476 ~~~~~~~~~~~~~~-~---~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 476 REPNDVCAICYQEM-S---ARITPCS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred hcccCcchHHHHHH-H---hcccccc---chhHHHhhhhhccccCCCchhh
Confidence 34578999999987 2 2567788 8999999999999999997643
No 111
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=65.33 E-value=4.5 Score=36.82 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=36.5
Q ss_pred cccccccccccccCCce-EEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 153 TKICSVCLEEFQEEQPV-TRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~-~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
...|+||.+.....+.. .-.||++..|..|+..-...+..||.||.+..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 47899999987444322 22447888888888888888999999997653
No 112
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=64.08 E-value=4.6 Score=33.96 Aligned_cols=40 Identities=30% Similarity=0.815 Sum_probs=26.9
Q ss_pred ccccccccccc-----cccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcC
Q 028791 152 NTKICSVCLEE-----FQEEQPVTRL-PCSHKYHSDCVLPWLAAHPQCPYCR 197 (203)
Q Consensus 152 ~~~~C~ICle~-----~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CP~CR 197 (203)
..+.|.||-+. |... .++.- .|+..||..|.. ...||-|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 46788899752 2221 23333 399999999986 26699994
No 113
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.28 E-value=3 Score=41.29 Aligned_cols=41 Identities=27% Similarity=0.660 Sum_probs=30.0
Q ss_pred ccccccccccccccCC-ceEEecCCCcccHHhHHHHHhcCCCCC
Q 028791 152 NTKICSVCLEEFQEEQ-PVTRLPCSHKYHSDCVLPWLAAHPQCP 194 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~-~~~~LpC~H~Fh~~CI~~Wl~~~~~CP 194 (203)
+...|.||+..|.... .-+.+-|||..|..|+.... +.+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 4568999988877652 22445699999999998764 45577
No 114
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.26 E-value=5.2 Score=36.01 Aligned_cols=37 Identities=24% Similarity=0.565 Sum_probs=29.5
Q ss_pred CccccccccccccccCCceEEecC----CCcccHHhHHHHHhcC
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPC----SHKYHSDCVLPWLAAH 190 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC----~H~Fh~~CI~~Wl~~~ 190 (203)
.....|.+|.|.+++. ....| .|.||+-|-.+-++..
T Consensus 266 ~apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhh
Confidence 4458899999998876 34446 7999999999998654
No 115
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=60.33 E-value=4.6 Score=27.56 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=19.0
Q ss_pred CCccccccccccccccCCceEEec-CCCcccHHhHHHH
Q 028791 150 KSNTKICSVCLEEFQEEQPVTRLP-CSHKYHSDCVLPW 186 (203)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~W 186 (203)
+.+...|.+|...|..-..-..-. ||+.||..|....
T Consensus 6 d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 345778999999997653333333 9999999997643
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.86 E-value=8.3 Score=38.82 Aligned_cols=42 Identities=21% Similarity=0.420 Sum_probs=29.9
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCC
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPY 195 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~ 195 (203)
...|.+|-..+..- .+..-.|+|.-|.+|+..|+..+..||.
T Consensus 779 ~~~CtVC~~vi~G~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGV-DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeeee-EeecccccccccHHHHHHHHhcCCCCcc
Confidence 34788887654432 1111239999999999999988888876
No 117
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.49 E-value=5.2 Score=40.33 Aligned_cols=44 Identities=25% Similarity=0.542 Sum_probs=31.5
Q ss_pred ccccccccccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCc
Q 028791 152 NTKICSVCLEEFQEE----QPVTRLPCSHKYHSDCVLPWLAAHPQCPYC 196 (203)
Q Consensus 152 ~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~C 196 (203)
.+..|.-|.+..... +.+.++-|+|.||..|+..-...+. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 345899999875532 4567788999999999988764443 4444
No 118
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.33 E-value=10 Score=33.59 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=28.9
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
.-+-|..||..+..+ +..|=||.|+..||.+++
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHH
Confidence 345688999999999 888999999999999986
No 119
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=55.08 E-value=4.6 Score=39.47 Aligned_cols=43 Identities=26% Similarity=0.706 Sum_probs=26.1
Q ss_pred Cccccccccccc-----cccCCceEEecCCCcccHHhHHHHHhcCCCCCCc
Q 028791 151 SNTKICSVCLEE-----FQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYC 196 (203)
Q Consensus 151 ~~~~~C~ICle~-----~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~C 196 (203)
...+.|.||... |.......-..|++.||..|+.. ....||.|
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 346778888431 11111222344999999999755 34449999
No 120
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=53.68 E-value=22 Score=24.32 Aligned_cols=45 Identities=22% Similarity=0.657 Sum_probs=30.9
Q ss_pred ccccccccccccCCceEEecC--CCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 154 KICSVCLEEFQEEQPVTRLPC--SHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC--~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
..|-.|-.++.....-+.+ | ...||..|....+ +..||-|...++
T Consensus 6 pnCE~C~~dLp~~s~~A~I-CSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI-CSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceE-EeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 4677777777665422222 4 3469999999876 677999987765
No 121
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.24 E-value=18 Score=27.43 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=30.1
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAA 189 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~ 189 (203)
...|.||-..+..+++...++ .-..|++|+..-...
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhc
Confidence 568999999999999888888 677999999875533
No 122
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=45.78 E-value=16 Score=24.42 Aligned_cols=42 Identities=26% Similarity=0.636 Sum_probs=19.3
Q ss_pred ccccccccccCC------ceEEec-CCCcccHHhHHHHHhcCCCCCCcC
Q 028791 156 CSVCLEEFQEEQ------PVTRLP-CSHKYHSDCVLPWLAAHPQCPYCR 197 (203)
Q Consensus 156 C~ICle~~~~~~------~~~~Lp-C~H~Fh~~CI~~Wl~~~~~CP~CR 197 (203)
|--|+..|..+. ....-| |++.||.+|=.-.=+.--.||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 455666665542 223333 999999999532223334688873
No 125
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=44.57 E-value=18 Score=33.16 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=33.6
Q ss_pred cccccccccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcCcCc
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHK-YHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
..+|-+|-+.+... +..+|+|. ||..|.. +....+||.|...+
T Consensus 343 ~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 343 SLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccc
Confidence 56788888766554 77889996 8999987 67788999997654
No 126
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=42.43 E-value=27 Score=20.12 Aligned_cols=37 Identities=19% Similarity=0.563 Sum_probs=23.1
Q ss_pred ccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 156 CSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 156 C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
|..|-+.+...+. ....=+..||..|+ .|..|..+|.
T Consensus 2 C~~C~~~i~~~~~-~~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGEL-VLRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcE-EEEeCCccccccCC--------CCcccCCcCc
Confidence 7778777665422 22234677888774 5777776653
No 127
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=40.76 E-value=19 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=24.3
Q ss_pred cccccccccccccCCceEE-ecCCCcccHHhHHHHH
Q 028791 153 TKICSVCLEEFQEEQPVTR-LPCSHKYHSDCVLPWL 187 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl 187 (203)
...|.+|-..|..-..-.. ..||++||..|.....
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 3578889887776432222 2399999999987654
No 128
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=40.34 E-value=12 Score=23.85 Aligned_cols=43 Identities=30% Similarity=0.635 Sum_probs=26.5
Q ss_pred cccccccccccCCceEEecCCCcccHHhHHHHHh------cCCCCCCcC
Q 028791 155 ICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLA------AHPQCPYCR 197 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~------~~~~CP~CR 197 (203)
.|.||.......+.+.=-.|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3788888433332222234899999999876432 134677764
No 129
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=38.88 E-value=31 Score=31.67 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=31.4
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcC
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRP 199 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~ 199 (203)
...|-.|.+........+--.|.+.||.+|-.-.=+.-..||.|...
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 44599997666555433434499999999964433444579999753
No 130
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.25 E-value=2.6 Score=30.01 Aligned_cols=40 Identities=23% Similarity=0.524 Sum_probs=17.4
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
..|+.|..++.... ++.+|..|-.. +.....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 35777776644331 55555556443 233446777776654
No 131
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.83 E-value=34 Score=24.77 Aligned_cols=44 Identities=23% Similarity=0.585 Sum_probs=27.5
Q ss_pred cccccccccccCCceEEecC--CCcccHHhHHHHHhcCCCCCCcCcCcc
Q 028791 155 ICSVCLEEFQEEQPVTRLPC--SHKYHSDCVLPWLAAHPQCPYCRRPAL 201 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC--~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 201 (203)
.|--|-.++.....-. +-| .+.||.+|...-+ +..||-|-..++
T Consensus 7 nCECCDrDLpp~s~dA-~ICtfEcTFCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 7 NCECCDRDLPPDSTDA-RICTFECTFCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred CCcccCCCCCCCCCce-eEEEEeeehhHhHHHHhh--cCcCCCCCchhh
Confidence 4555666654432212 224 5789999987644 667999977654
No 132
>PLN02189 cellulose synthase
Probab=37.50 E-value=28 Score=36.44 Aligned_cols=48 Identities=17% Similarity=0.515 Sum_probs=32.9
Q ss_pred cccccccccccccc---CCceEEec-CCCcccHHhHHHHH--hcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQE---EQPVTRLP-CSHKYHSDCVLPWL--AAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~---~~~~~~Lp-C~H~Fh~~CI~~Wl--~~~~~CP~CR~~v 200 (203)
....|.||-+++.. ++.-+... |+--.|..|. ++- +.+..||.|+...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCch
Confidence 35599999998753 33222222 7777999998 443 4567899998753
No 133
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.03 E-value=13 Score=33.70 Aligned_cols=48 Identities=23% Similarity=0.532 Sum_probs=38.0
Q ss_pred CccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
.....|-||...+..+. ..-.|.|.|++.|...|......||.|+...
T Consensus 103 ~~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeEEecc--cccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 45678999998877662 2223999999999999998888899887643
No 134
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.97 E-value=6.7 Score=34.55 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=21.0
Q ss_pred CccccccccccccccCCceEEec-----CCCcccHHhHHHHHhcCCCCCCcCc
Q 028791 151 SNTKICSVCLEEFQEEQPVTRLP-----CSHKYHSDCVLPWLAAHPQCPYCRR 198 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~Lp-----C~H~Fh~~CI~~Wl~~~~~CP~CR~ 198 (203)
+....|+||=..-... .... =.+.+|..|-.+|--....||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s---~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLS---VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEE---EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceE---EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3457999998753222 1111 1345788899999878889999954
No 135
>PLN02436 cellulose synthase A
Probab=34.34 E-value=35 Score=35.84 Aligned_cols=48 Identities=19% Similarity=0.585 Sum_probs=32.6
Q ss_pred cccccccccccccc---CCceEEe-cCCCcccHHhHHHHH--hcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQE---EQPVTRL-PCSHKYHSDCVLPWL--AAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~---~~~~~~L-pC~H~Fh~~CI~~Wl--~~~~~CP~CR~~v 200 (203)
....|.||-+++.. +|.-+.. -|+--.|..|. ++- ..+..||.|+...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRY 88 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCch
Confidence 35599999998643 3322222 27777999998 443 4567899998753
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.94 E-value=40 Score=26.14 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=31.0
Q ss_pred ccccccccccccCC----------ceEE-ecCCCcccHHhHHHHHhcCCCCCCcC
Q 028791 154 KICSVCLEEFQEEQ----------PVTR-LPCSHKYHSDCVLPWLAAHPQCPYCR 197 (203)
Q Consensus 154 ~~C~ICle~~~~~~----------~~~~-LpC~H~Fh~~CI~~Wl~~~~~CP~CR 197 (203)
..|--|+..|..+. .... ..|.+.||.+|-.-+-+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46888888876431 1122 23999999999777766666799985
No 137
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=33.93 E-value=39 Score=31.07 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=31.0
Q ss_pred cccccccccccccc---------------C-CceEEecCCCcccHHhHHHHHh---------cCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQE---------------E-QPVTRLPCSHKYHSDCVLPWLA---------AHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~---------------~-~~~~~LpC~H~Fh~~CI~~Wl~---------~~~~CP~CR~~v 200 (203)
.+.+|++|+..=.. + -.-...||||.--..-..-|.. .+..||+|-..+
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 46789999974210 0 0123467999866666666763 234799997655
No 138
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.02 E-value=44 Score=29.71 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=33.8
Q ss_pred CccccccccccccccCCc-eEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 151 SNTKICSVCLEEFQEEQP-VTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
...+.|+|---++..... ++.-+|||+|-..-+.+. ....|++|.+.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y 157 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAY 157 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcc
Confidence 456889986655544322 344569999999888775 366799998765
No 139
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.26 E-value=13 Score=24.40 Aligned_cols=9 Identities=56% Similarity=1.416 Sum_probs=4.4
Q ss_pred CCCCcCcCc
Q 028791 192 QCPYCRRPA 200 (203)
Q Consensus 192 ~CP~CR~~v 200 (203)
.||+|..++
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 688887665
No 140
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.01 E-value=8.8 Score=33.54 Aligned_cols=48 Identities=23% Similarity=0.586 Sum_probs=36.0
Q ss_pred ccccccccccccccC-C--ceEEec--------CCCcccHHhHHHHHhcC-CCCCCcCcC
Q 028791 152 NTKICSVCLEEFQEE-Q--PVTRLP--------CSHKYHSDCVLPWLAAH-PQCPYCRRP 199 (203)
Q Consensus 152 ~~~~C~ICle~~~~~-~--~~~~Lp--------C~H~Fh~~CI~~Wl~~~-~~CP~CR~~ 199 (203)
....|.||...|... . .-.++. |+|..|..|+..-+... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346799999988832 2 223456 99999999999987544 589999863
No 141
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=31.60 E-value=47 Score=24.48 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=28.1
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCccC
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPALV 202 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 202 (203)
-..|+-|...+.--| .+| |..|+..+..|..|++++..
T Consensus 33 rS~C~~C~~~L~~~~---lIP---------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWD---LIP---------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccc---cch---------HHHHHHhCCCCcccCCCCCh
Confidence 457888877766553 233 66889999999999998864
No 142
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=30.95 E-value=44 Score=25.46 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=26.3
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHH
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWL 187 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl 187 (203)
..|.||-+++..++.-..++ +-..|+.|+..=.
T Consensus 3 WkC~iCg~~I~~gqlFTF~~-kG~VH~~C~~~~~ 35 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTK-KGPVHYECFREKA 35 (101)
T ss_pred eEEEecCCeeeecceEEEec-CCcEeHHHHHHHH
Confidence 47999999999997665554 4779999998755
No 143
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=30.63 E-value=30 Score=24.44 Aligned_cols=12 Identities=17% Similarity=0.803 Sum_probs=8.4
Q ss_pred cccHHhHHHHHh
Q 028791 177 KYHSDCVLPWLA 188 (203)
Q Consensus 177 ~Fh~~CI~~Wl~ 188 (203)
-||..|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999973
No 144
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=30.47 E-value=9.9 Score=34.04 Aligned_cols=38 Identities=24% Similarity=0.652 Sum_probs=29.4
Q ss_pred cccccccccccccCCceEEecCCCcccHHhHHHHHhcC
Q 028791 153 TKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH 190 (203)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~ 190 (203)
..+|.+|+++|..+.......|...||..|+..|+...
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ceecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 44999999999865444555666699999999998553
No 145
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=30.23 E-value=24 Score=29.04 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=9.9
Q ss_pred CCCCCcCcCccCC
Q 028791 191 PQCPYCRRPALVW 203 (203)
Q Consensus 191 ~~CP~CR~~v~~~ 203 (203)
..||+||..|.-|
T Consensus 81 L~CPLCRG~V~GW 93 (162)
T PF07800_consen 81 LACPLCRGEVKGW 93 (162)
T ss_pred ccCccccCceece
Confidence 3588888888766
No 146
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.90 E-value=40 Score=24.57 Aligned_cols=49 Identities=20% Similarity=0.436 Sum_probs=19.7
Q ss_pred ccccccccccccccCCc--eE--EecCCCcccHHhHHHHH-hcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQEEQP--VT--RLPCSHKYHSDCVLPWL-AAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~--~~--~LpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v 200 (203)
....|.||-+++..... +. ..-|+--.|..|..-=. ..+..||.|+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 45689999998654321 22 23377778999986543 4567899998653
No 147
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=29.26 E-value=60 Score=24.56 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=18.2
Q ss_pred CCcccHHhHHHHHhc---------CCCCCCcCc
Q 028791 175 SHKYHSDCVLPWLAA---------HPQCPYCRR 198 (203)
Q Consensus 175 ~H~Fh~~CI~~Wl~~---------~~~CP~CR~ 198 (203)
.-.||..||...... +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999887632 236999986
No 148
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.41 E-value=8.3 Score=21.39 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=4.5
Q ss_pred CCCCCcCcC
Q 028791 191 PQCPYCRRP 199 (203)
Q Consensus 191 ~~CP~CR~~ 199 (203)
..||.|-.+
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 345555443
No 149
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=28.38 E-value=52 Score=34.66 Aligned_cols=47 Identities=19% Similarity=0.594 Sum_probs=32.4
Q ss_pred ccccccccccccccCC---c-eEEecCCCcccHHhHHHHH--hcCCCCCCcCcC
Q 028791 152 NTKICSVCLEEFQEEQ---P-VTRLPCSHKYHSDCVLPWL--AAHPQCPYCRRP 199 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~---~-~~~LpC~H~Fh~~CI~~Wl--~~~~~CP~CR~~ 199 (203)
....|.||-+++.... . ++.--|+--.|..|. ++= +.+..||.|+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCc
Confidence 3559999999865432 2 222337777999998 443 556789999875
No 150
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.06 E-value=39 Score=29.25 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=16.4
Q ss_pred ccHHhHHHHHhcCCCCCCcCcC
Q 028791 178 YHSDCVLPWLAAHPQCPYCRRP 199 (203)
Q Consensus 178 Fh~~CI~~Wl~~~~~CP~CR~~ 199 (203)
-|.+|-..-=.+-+.||+|++.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~K 217 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAK 217 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccc
Confidence 4667776666778899999763
No 151
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.60 E-value=63 Score=28.88 Aligned_cols=47 Identities=26% Similarity=0.525 Sum_probs=29.4
Q ss_pred CCCccccccccccccccCCceEEec-CC-CcccHHhHHHHH-hcCCCCCC
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLP-CS-HKYHSDCVLPWL-AAHPQCPY 195 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~Lp-C~-H~Fh~~CI~~Wl-~~~~~CP~ 195 (203)
+...-..|.||+|....+-.-..|. -. =.=|.+|+..|= ..+..||-
T Consensus 26 d~~tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 26 DTETLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred cccceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCc
Confidence 3455678999998866553222222 11 135799999994 66778884
No 152
>PF09998 DUF2239: Uncharacterized protein conserved in bacteria (DUF2239); InterPro: IPR018715 This family of uncharacterised bacterial proteins has no known function.
Probab=27.48 E-value=21 Score=30.08 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=16.7
Q ss_pred HHhhhcCCCCCCccccchhh
Q 028791 37 HRTNMAGMLPGVGVPQRRKI 56 (203)
Q Consensus 37 ~~~~mag~lpgv~~~~rr~~ 56 (203)
-|..|||-|||-|-|.|--+
T Consensus 142 FMsamAGdlPgfEEA~RALf 161 (187)
T PF09998_consen 142 FMSAMAGDLPGFEEASRALF 161 (187)
T ss_pred HHHHHccCCCChHHHHHHHH
Confidence 37899999999998887544
No 153
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.28 E-value=17 Score=34.03 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=27.7
Q ss_pred CccccccccccccccCCce---EE--ecCCCcccHHhHHHHHhc
Q 028791 151 SNTKICSVCLEEFQEEQPV---TR--LPCSHKYHSDCVLPWLAA 189 (203)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~---~~--LpC~H~Fh~~CI~~Wl~~ 189 (203)
.+...|+.|...+...... .. .+|.|.||+.|+..|...
T Consensus 224 ~ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 224 ANTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 3455699999887765422 11 249999999998888644
No 154
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.91 E-value=8.3 Score=25.34 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=9.4
Q ss_pred cccccccccccccC
Q 028791 153 TKICSVCLEEFQEE 166 (203)
Q Consensus 153 ~~~C~ICle~~~~~ 166 (203)
.+.|+.|-+.|...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 46788888765543
No 155
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=26.88 E-value=45 Score=21.31 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=17.0
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVL 184 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~ 184 (203)
+-+.|..|-..+.... ....=+..||..|..
T Consensus 25 ~Cf~C~~C~~~l~~~~--~~~~~~~~~C~~c~~ 55 (58)
T PF00412_consen 25 ECFKCSKCGKPLNDGD--FYEKDGKPYCKDCYQ 55 (58)
T ss_dssp TTSBETTTTCBTTTSS--EEEETTEEEEHHHHH
T ss_pred cccccCCCCCccCCCe--eEeECCEEECHHHHh
Confidence 4566777776665554 222234556666654
No 156
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=26.83 E-value=40 Score=22.10 Aligned_cols=9 Identities=44% Similarity=1.265 Sum_probs=6.4
Q ss_pred hcCCCCCCc
Q 028791 188 AAHPQCPYC 196 (203)
Q Consensus 188 ~~~~~CP~C 196 (203)
.....||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 455679988
No 157
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=25.49 E-value=20 Score=23.48 Aligned_cols=19 Identities=21% Similarity=0.716 Sum_probs=14.7
Q ss_pred ceEEe-cCCCcccHHhHHHH
Q 028791 168 PVTRL-PCSHKYHSDCVLPW 186 (203)
Q Consensus 168 ~~~~L-pC~H~Fh~~CI~~W 186 (203)
..+.- .|++.||..|..+|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34555 48999999998887
No 158
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=25.37 E-value=93 Score=23.18 Aligned_cols=37 Identities=19% Similarity=0.584 Sum_probs=27.0
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 200 (203)
....|-||-..+.+. +|.||..|. -....|.+|-..|
T Consensus 43 ~~~~C~~CK~~v~q~--------g~~YCq~CA----YkkGiCamCGKki 79 (90)
T PF10235_consen 43 YSSKCKICKTKVHQP--------GAKYCQTCA----YKKGICAMCGKKI 79 (90)
T ss_pred cCccccccccccccC--------CCccChhhh----cccCcccccCCee
Confidence 356899998765542 577899895 3467899997665
No 159
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=25.26 E-value=39 Score=24.98 Aligned_cols=29 Identities=24% Similarity=0.580 Sum_probs=21.5
Q ss_pred ccccccccccccccCCceEEec-----CCCcccHHhHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLP-----CSHKYHSDCVLP 185 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-----C~H~Fh~~CI~~ 185 (203)
....|.||... .+ ..+. |...||..|...
T Consensus 54 ~~~~C~iC~~~--~G---~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GG---ACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--Cc---eeEEcCCCCCCcCCCHHHHHH
Confidence 46799999987 33 3333 677899999866
No 160
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=24.61 E-value=25 Score=38.01 Aligned_cols=51 Identities=29% Similarity=0.656 Sum_probs=37.9
Q ss_pred CCCccccccccccccccCCceEEecCCCcccHHhHHHHHhcCC----CCCCcCcC
Q 028791 149 SKSNTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAHP----QCPYCRRP 199 (203)
Q Consensus 149 ~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CP~CR~~ 199 (203)
.......|.||.......+.+.-.-|.-.||..|+.+-+...+ .||-|+..
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 3456788999999877653333344888899999999886544 69999864
No 161
>PLN02400 cellulose synthase
Probab=24.56 E-value=49 Score=34.83 Aligned_cols=47 Identities=21% Similarity=0.557 Sum_probs=32.4
Q ss_pred ccccccccccccccCC---c-eEEecCCCcccHHhHHHHH--hcCCCCCCcCcC
Q 028791 152 NTKICSVCLEEFQEEQ---P-VTRLPCSHKYHSDCVLPWL--AAHPQCPYCRRP 199 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~---~-~~~LpC~H~Fh~~CI~~Wl--~~~~~CP~CR~~ 199 (203)
....|.||-+++.... . ++.--|+--.|..|. ++= ..+..||.|+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCc
Confidence 3559999999875432 1 222337777999998 443 456789999875
No 162
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=23.62 E-value=44 Score=25.49 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=21.8
Q ss_pred cccccccccccccc--CCceEEecCCCcccHHhHHH
Q 028791 152 NTKICSVCLEEFQE--EQPVTRLPCSHKYHSDCVLP 185 (203)
Q Consensus 152 ~~~~C~ICle~~~~--~~~~~~LpC~H~Fh~~CI~~ 185 (203)
+...|.+|...|.. +....-..|.|.+|..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 45689999987643 22344455999999998644
No 163
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=23.31 E-value=40 Score=23.86 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=21.6
Q ss_pred ccccccccccccccCCceEEecCCCcccHHhHHH
Q 028791 152 NTKICSVCLEEFQEEQPVTRLPCSHKYHSDCVLP 185 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~ 185 (203)
....|.+|-......-....-.|.-.||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 4679999997622221112223788899999865
No 164
>PF14353 CpXC: CpXC protein
Probab=22.26 E-value=87 Score=23.87 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=23.2
Q ss_pred ccccccccccccCCceEEecCCCcccHHhHHHHHhcC---CCCCCcCcCc
Q 028791 154 KICSVCLEEFQEEQPVTRLPCSHKYHSDCVLPWLAAH---PQCPYCRRPA 200 (203)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~---~~CP~CR~~v 200 (203)
..|+-|-..|... +..--.-.....-....+... .+||.|...+
T Consensus 2 itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 2 ITCPHCGHEFEFE---VWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred cCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 3677777776654 222222233344444444332 3699987654
No 165
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.88 E-value=48 Score=30.00 Aligned_cols=45 Identities=18% Similarity=0.428 Sum_probs=28.7
Q ss_pred ccccccccccccccCCceEEe--c--CCCcccHHhHHHHHhcCCCCCCcCc
Q 028791 152 NTKICSVCLEEFQEEQPVTRL--P--CSHKYHSDCVLPWLAAHPQCPYCRR 198 (203)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L--p--C~H~Fh~~CI~~Wl~~~~~CP~CR~ 198 (203)
....|+||=..=... ++.+ . =.+.+|..|-.+|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 467899998752211 0111 0 1234666788899888889999964
No 166
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.42 E-value=53 Score=19.99 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=8.8
Q ss_pred cccccccccccCC
Q 028791 155 ICSVCLEEFQEEQ 167 (203)
Q Consensus 155 ~C~ICle~~~~~~ 167 (203)
.|+-|...|..++
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 5777777776554
No 167
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.00 E-value=64 Score=18.46 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=9.1
Q ss_pred cccccccccccCCceEEecCCCcccHHhH
Q 028791 155 ICSVCLEEFQEEQPVTRLPCSHKYHSDCV 183 (203)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~Fh~~CI 183 (203)
.|.+|-+.......-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57788877665211122447888888875
No 168
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.96 E-value=30 Score=32.13 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCCCccccccccccccccCCceEEecC---CCcc--------cHHhHHHHH-----hcCCCCCCcCc
Q 028791 148 GSKSNTKICSVCLEEFQEEQPVTRLPC---SHKY--------HSDCVLPWL-----AAHPQCPYCRR 198 (203)
Q Consensus 148 ~~~~~~~~C~ICle~~~~~~~~~~LpC---~H~F--------h~~CI~~Wl-----~~~~~CP~CR~ 198 (203)
-+.+.+.-|++|-+....= .-..|.| .-.| |+.|+.+-- .....||.||.
T Consensus 10 ydedl~ElCPVCGDkVSGY-HYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 10 YDEDLGELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred CccccccccccccCccccc-eeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 3445677899998864321 1123444 3222 444544321 12347999986
No 169
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.92 E-value=83 Score=33.10 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=32.8
Q ss_pred ccccccccccccccC---Cc-eEEecCCCcccHHhHHHHH--hcCCCCCCcCcCc
Q 028791 152 NTKICSVCLEEFQEE---QP-VTRLPCSHKYHSDCVLPWL--AAHPQCPYCRRPA 200 (203)
Q Consensus 152 ~~~~C~ICle~~~~~---~~-~~~LpC~H~Fh~~CI~~Wl--~~~~~CP~CR~~v 200 (203)
....|.||-+++... +. ++.--|+--.|..|. ++- +.+..||.|+...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRY 67 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCch
Confidence 466899999986543 22 222337777999999 443 4566899998753
Done!